Citrus Sinensis ID: 016446
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| 255557887 | 470 | conserved hypothetical protein [Ricinus | 0.994 | 0.823 | 0.917 | 0.0 | |
| 449510979 | 477 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.815 | 0.898 | 0.0 | |
| 449449823 | 474 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.820 | 0.905 | 0.0 | |
| 297820156 | 467 | hypothetical protein ARALYDRAFT_906825 [ | 0.987 | 0.822 | 0.876 | 0.0 | |
| 18410015 | 467 | transducin/WD40 domain-containing protei | 0.987 | 0.822 | 0.874 | 0.0 | |
| 224139426 | 473 | predicted protein [Populus trichocarpa] | 0.989 | 0.813 | 0.879 | 0.0 | |
| 147805592 | 464 | hypothetical protein VITISV_036440 [Viti | 0.982 | 0.823 | 0.871 | 0.0 | |
| 357506785 | 475 | hypothetical protein MTR_7g074450 [Medic | 0.989 | 0.810 | 0.861 | 0.0 | |
| 225439072 | 464 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.823 | 0.871 | 0.0 | |
| 224069828 | 471 | predicted protein [Populus trichocarpa] | 0.989 | 0.817 | 0.874 | 0.0 |
| >gi|255557887|ref|XP_002519972.1| conserved hypothetical protein [Ricinus communis] gi|223540736|gb|EEF42296.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/389 (91%), Positives = 370/389 (95%), Gaps = 2/389 (0%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRETN+RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNQRICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYI+RGKPD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYIKRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR+SSHVPLKILSIEDGTVLK
Sbjct: 204 QDSVYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRASSHVPLKILSIEDGTVLKA 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE E+QW
Sbjct: 324 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAETEEQW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
MEGSAGSIN+S+ILTGKCLAKINA N PK + SSS G SK+ S +RSTV EAL
Sbjct: 384 MEGSAGSINISNILTGKCLAKINAGNGGPKGGECSSSSSIGCSKQ--SCSSMRSTVAEAL 441
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 442 EDITALFYDEERNEIYTGNRHGLVHVWSN 470
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510979|ref|XP_004163828.1| PREDICTED: uncharacterized protein LOC101230142 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/394 (89%), Positives = 374/394 (94%), Gaps = 5/394 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR+SSHVPLKILSIEDGTVLK
Sbjct: 204 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRASSHVPLKILSIEDGTVLKA 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ +D W
Sbjct: 324 QLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDHW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDE-----LGSSSTGKSKKLNKSSYIRST 355
M G+AGSIN+S+ILTGKCLAKINA+N +PKV+D+ SSS G S+K+ SS +R+T
Sbjct: 384 MVGNAGSINISNILTGKCLAKINASNGNPKVNDDSSSSSSSSSSAGSSRKVCNSSQMRNT 443
Query: 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389
V EALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 444 VAEALEDITALFYDEERNEIYTGNKNGLVHVWSN 477
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449823|ref|XP_004142664.1| PREDICTED: uncharacterized protein LOC101207987 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/391 (90%), Positives = 373/391 (95%), Gaps = 2/391 (0%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR+SSHVPLKILSIEDGTVLK
Sbjct: 204 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRASSHVPLKILSIEDGTVLKA 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ +D W
Sbjct: 324 QLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDHW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDD--ELGSSSTGKSKKLNKSSYIRSTVGE 358
M G+AGSIN+S+ILTGKCLAKINA+N +PKV+D SSS G S+K+ SS +R+TV E
Sbjct: 384 MVGNAGSINISNILTGKCLAKINASNGNPKVNDSSSSSSSSAGSSRKVCNSSQMRNTVAE 443
Query: 359 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389
ALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 444 ALEDITALFYDEERNEIYTGNKNGLVHVWSN 474
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820156|ref|XP_002877961.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] gi|297323799|gb|EFH54220.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/389 (87%), Positives = 362/389 (93%), Gaps = 5/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF R++SHVPLKILSIEDGTVLK
Sbjct: 204 QDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFKRAASHVPLKILSIEDGTVLKS 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR EFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRAEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ EDQW
Sbjct: 324 QLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ SS GK+ K R+ V EAL
Sbjct: 384 IEGNAGSINISNILTGKCLAKITPSSGPPKEDESSSSSCLGKNSKQR-----RNAVAEAL 438
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 439 EDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18410015|ref|NP_566994.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown protein [Arabidopsis thaliana] gi|16226834|gb|AAL16275.1|AF428345_1 AT3g54190/F24B22_150 [Arabidopsis thaliana] gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis thaliana] gi|332645676|gb|AEE79197.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/389 (87%), Positives = 362/389 (93%), Gaps = 5/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF R++SHVPLKILSIEDGTVLK
Sbjct: 204 QDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFKRAASHVPLKILSIEDGTVLKS 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR EFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRAEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ EDQW
Sbjct: 324 QLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ S+ GK+ K R+ V EAL
Sbjct: 384 IEGNAGSINISNILTGKCLAKITPSSGPPKDDESSSSNCMGKNSKQR-----RNAVAEAL 438
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 439 EDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139426|ref|XP_002323106.1| predicted protein [Populus trichocarpa] gi|222867736|gb|EEF04867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/389 (87%), Positives = 362/389 (93%), Gaps = 4/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRETN+RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 89 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNQRICFLNVSPDEVIRSLFYNKNNDSLI 148
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYIRRGKPD+GF LFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 149 TVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFPLFESESLKWPGFVEFDDVNGKVLTYSA 208
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNYTMLYSISD VQEIKISPGIMLLI NRSS +VPLKILSIEDGT+LK
Sbjct: 209 QDSIYKVFDLKNYTMLYSISDTDVQEIKISPGIMLLILNRSSGYVPLKILSIEDGTILKD 268
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR+ + EVSRT+FMTPSAFIFLYEN
Sbjct: 269 FKHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRHTGIREVSRTDFMTPSAFIFLYEN 328
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ +DQW
Sbjct: 329 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDQW 388
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
MEG+AGSIN+S+ILTGKCLAKINATN SPK ++ S+ + K +L +RSTV AL
Sbjct: 389 MEGNAGSINISNILTGKCLAKINATNGSPKDEECSSSTGSSKQSRL----MMRSTVAAAL 444
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 445 EDITALFYDEERNEIYTGNRHGLVHVWSN 473
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147805592|emb|CAN60711.1| hypothetical protein VITISV_036440 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/389 (87%), Positives = 360/389 (92%), Gaps = 7/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
KRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 83 FKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFLNVSPDEVIRSLFYNKNNDSLI 142
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASD+FSSLKCRST+IEYIRRGKP+ GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 143 TVSVYASDSFSSLKCRSTRIEYIRRGKPEEGFALFESESLKWPGFVEFDDVNGKVLTYSA 202
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNY MLYSISD++VQEIKISPGIMLLIFNR++SHVPLKILSIEDGTVLK
Sbjct: 203 QDSIYKVFDLKNYVMLYSISDENVQEIKISPGIMLLIFNRATSHVPLKILSIEDGTVLKD 262
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN EL EV+RTEFMTPSAFIFLYEN
Sbjct: 263 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTELKEVNRTEFMTPSAFIFLYEN 322
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ D W
Sbjct: 323 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSSDHW 382
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
EG+AGSIN+S+ILTGKCLAKINA++ PKV++ K ++ S IRSTV EAL
Sbjct: 383 TEGNAGSINISNILTGKCLAKINASDGRPKVEER-------KRRRTGSSCMIRSTVAEAL 435
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 436 EDITALFYDEERNEIYTGNKNGLVHVWSN 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506785|ref|XP_003623681.1| hypothetical protein MTR_7g074450 [Medicago truncatula] gi|355498696|gb|AES79899.1| hypothetical protein MTR_7g074450 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/389 (86%), Positives = 362/389 (93%), Gaps = 4/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKV+EIVAA++IVFALAHSG+CAAFSRETN RICFLN+ PDEVIRSLFYNKNNDSLI
Sbjct: 91 MKRTKVVEIVAAKNIVFALAHSGLCAAFSRETNERICFLNICPDEVIRSLFYNKNNDSLI 150
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYAS+NFSSLKCRST+IEYI+R KPD+GF LF+SESLKWPGFVEFDDVN KVLTYSA
Sbjct: 151 TVSVYASENFSSLKCRSTRIEYIKRAKPDAGFPLFQSESLKWPGFVEFDDVNAKVLTYSA 210
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNYT+LYSISD++VQEIKISPGIMLLIFNR+S H+PLKI+SIEDGTVLK
Sbjct: 211 QDSIYKVFDLKNYTLLYSISDRNVQEIKISPGIMLLIFNRASGHIPLKIISIEDGTVLKA 270
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR++ELMEVSRTEFMTPSAFIFLYEN
Sbjct: 271 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRSSELMEVSRTEFMTPSAFIFLYEN 330
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTV+VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE EDQW
Sbjct: 331 QLFLTFRNRTVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAESEDQW 390
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
ME +AGSINVS+ILTGKC+AKINA NC KVDD S+ S K SS +RS+V EAL
Sbjct: 391 MEANAGSINVSNILTGKCVAKINAANCISKVDD----CSSTCSCKHTDSSQLRSSVAEAL 446
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDE+RNEIYTGNRHG VHVWSN
Sbjct: 447 EDITALFYDEDRNEIYTGNRHGFVHVWSN 475
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439072|ref|XP_002266836.1| PREDICTED: uncharacterized protein LOC100257044 [Vitis vinifera] gi|296085818|emb|CBI31142.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/389 (87%), Positives = 360/389 (92%), Gaps = 7/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
KRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 83 FKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFLNVSPDEVIRSLFYNKNNDSLI 142
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASD+FSSLKCRST+IEYIRRGKP+ GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 143 TVSVYASDSFSSLKCRSTRIEYIRRGKPEEGFALFESESLKWPGFVEFDDVNGKVLTYSA 202
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDSIYKVFDLKNY MLYSISD++VQEIKISPGIMLLIFNR++SHVPLKILSIEDGTVLK
Sbjct: 203 QDSIYKVFDLKNYVMLYSISDENVQEIKISPGIMLLIFNRATSHVPLKILSIEDGTVLKD 262
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN EL EV+RTEFMTPSAFIFLYEN
Sbjct: 263 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTELKEVNRTEFMTPSAFIFLYEN 322
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ D W
Sbjct: 323 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSSDHW 382
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
EG+AGSIN+S+ILTGKCLAKINA++ PKV++ K ++ S IRSTV EAL
Sbjct: 383 TEGNAGSINISNILTGKCLAKINASDGRPKVEER-------KRRRTGSSCMIRSTVAEAL 435
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 436 EDITALFYDEERNEIYTGNKNGLVHVWSN 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069828|ref|XP_002326424.1| predicted protein [Populus trichocarpa] gi|222833617|gb|EEE72094.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/389 (87%), Positives = 361/389 (92%), Gaps = 4/389 (1%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAA+DI+FALAHSGVCAAFSR TN RICFLN SPDEVI SLFYNKNNDS+I
Sbjct: 87 MKRTKVIEIVAAQDIIFALAHSGVCAAFSRVTNHRICFLNASPDEVILSLFYNKNNDSVI 146
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYIRRG PD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 147 TVSVYASDNFSSLKCRSTRIEYIRRGNPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 206
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNYTMLYSISDK VQEIKISPGIMLLI NRSSS+VPLKILSIEDGT+LK
Sbjct: 207 QDSMYKVFDLKNYTMLYSISDKDVQEIKISPGIMLLILNRSSSYVPLKILSIEDGTILKD 266
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR+ + EVSRTEF+TPSAFIFLYEN
Sbjct: 267 FHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRHTGIREVSRTEFLTPSAFIFLYEN 326
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNRTVAVWNFRGELVTSFEDHLLW PDCNTNN YITSDQDLIISYCKAE +DQW
Sbjct: 327 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWRPDCNTNNTYITSDQDLIISYCKAESDDQW 386
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360
MEG+ GSIN+S+ILTGKCLAKINATN SPK DE SSTG SK+ S ++STV EAL
Sbjct: 387 MEGNGGSINISNILTGKCLAKINATNGSPK--DEECCSSTGSSKQ--SCSLMKSTVAEAL 442
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 443 EDITALFYDEDRNEIYTGNRHGLVHVWSN 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.987 | 0.822 | 0.868 | 3e-179 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.982 | 0.817 | 0.835 | 4.7e-174 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 338/389 (86%), Positives = 357/389 (91%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
MKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 84 MKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFLNVSPDEVIRSLFYNKNNDSLI 143
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 144 TVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 203
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF R++SHVPLKILSIEDGTVLK
Sbjct: 204 QDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFKRAASHVPLKILSIEDGTVLKS 263
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR EFMTPSAFIFLYEN
Sbjct: 264 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRAEFMTPSAFIFLYEN 323
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ EDQW
Sbjct: 324 QLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQW 383
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXXXXXXXXXXXXXXYIRSTVGEAL 360
+EG+AGSIN+S+ILTGKCLAKI ++ PK DDE R+ V EAL
Sbjct: 384 IEGNAGSINISNILTGKCLAKITPSSGPPK-DDESSSSNCMGKNSKQR----RNAVAEAL 438
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 439 EDITALFYDEERNEIYTGNRHGLVHVWSN 467
|
|
| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1691 (600.3 bits), Expect = 4.7e-174, P = 4.7e-174
Identities = 325/389 (83%), Positives = 353/389 (90%)
Query: 1 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 60
+KR+KVIEIVAARDIVFAL SGVCA+FSRETN+++CFLNVSPDEVIRSLFYNKNNDSLI
Sbjct: 86 LKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCFLNVSPDEVIRSLFYNKNNDSLI 145
Query: 61 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120
TVSVYASDN+SSLKCRST+IEYI RG+ D+GF LFESESLKWPGFVEFDDVNGKVLTYSA
Sbjct: 146 TVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESESLKWPGFVEFDDVNGKVLTYSA 205
Query: 121 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180
QDS+YKVFDLKNY +LYSISDK+VQEIKISPGIMLLIF R++SHVPLKILSIEDGT+LK
Sbjct: 206 QDSVYKVFDLKNYALLYSISDKNVQEIKISPGIMLLIFKRAASHVPLKILSIEDGTLLKS 265
Query: 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240
F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL+EVSRT+FMTPSAFIFLYEN
Sbjct: 266 FHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELIEVSRTDFMTPSAFIFLYEN 325
Query: 241 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300
QLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA+ EDQW
Sbjct: 326 QLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQW 385
Query: 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXXXXXXXXXXXXXXYIRSTVGEAL 360
+EG+AGSIN+S+ILTGKCLAKI A N PK +D RS V EAL
Sbjct: 386 IEGNAGSINISNILTGKCLAKIKANNGPPKEEDCSSSDLGNSSRR-------RSAVAEAL 438
Query: 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389
EDIT+LFYDEERNEIYTGNRHGL+HVWSN
Sbjct: 439 EDITALFYDEERNEIYTGNRHGLLHVWSN 467
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 389 373 0.00087 117 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 616 (65 KB)
Total size of DFA: 254 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.59u 0.10s 30.69t Elapsed: 00:00:01
Total cpu time: 30.59u 0.10s 30.69t Elapsed: 00:00:01
Start: Sat May 11 07:37:41 2013 End: Sat May 11 07:37:42 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.98 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.8 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.76 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.75 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.75 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.73 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.7 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.65 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.65 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.64 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.62 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.62 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.61 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.6 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.59 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.58 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.54 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.54 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.52 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.5 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.48 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.47 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.46 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.43 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.43 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.39 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.39 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.39 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.38 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.36 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.35 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.21 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.17 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.14 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.1 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.1 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.06 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.05 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.05 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.04 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.98 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.97 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.96 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.94 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.91 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.88 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.88 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.86 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.83 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.77 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.76 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.64 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.63 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.62 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.57 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.55 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.54 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.45 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.44 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.41 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.37 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.34 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.33 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.3 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.29 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.29 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.22 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.2 | |
| PRK10115 | 686 | protease 2; Provisional | 98.18 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.18 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.16 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.11 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.03 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.03 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.02 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.9 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.88 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.82 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.75 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.72 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.71 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.57 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.54 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.54 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.52 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.46 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.37 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.27 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.25 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.23 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.02 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.9 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.88 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.8 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.8 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.77 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.67 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.64 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.58 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.44 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.39 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.39 | |
| PRK10115 | 686 | protease 2; Provisional | 96.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.38 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.34 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.21 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.19 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.18 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.07 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.07 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.92 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.88 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.58 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.58 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.31 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.26 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.18 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.17 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.07 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.07 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.99 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.89 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.52 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.15 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.09 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 94.04 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.01 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.82 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.74 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 93.53 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.28 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.15 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.94 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.88 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.34 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.48 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.05 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 90.51 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.21 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.13 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.47 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.3 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 88.58 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.49 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 88.13 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.04 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.69 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 86.34 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 86.17 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.97 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.85 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.66 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 85.12 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 84.14 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 83.93 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.93 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.2 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 82.81 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 82.57 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 82.53 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.22 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.01 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 81.71 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 81.64 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 81.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 81.16 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 81.02 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 80.46 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=425.53 Aligned_cols=318 Identities=14% Similarity=0.218 Sum_probs=287.4
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+.|.++.|+ +..||+++-|.|+||||+.|..++.|..+|. ++|-+|++||||+.||| |.-| .+|+||
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iAS----G~~d------g~I~lw 184 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIAS----GSKD------GSIRLW 184 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc-cEEEEEEECCCcchhhc----cccC------CeEEEe
Confidence 579999999 8999999999999999999999999999985 99999999999999999 5677 899999
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEec----CCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIML 155 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~----pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~l 155 (389)
|-.+|++. +.+|- .|..||.+++|-| |..++|||+|-||+|||||++.|+|++++.+ ..|.+|..--.+++
T Consensus 185 dpktg~~~-g~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 185 DPKTGQQI-GRALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred cCCCCCcc-ccccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 99999873 23343 4667788888864 5788999999999999999999999998874 58999999866677
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe-----------------------------------cCCCe
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------------------QFNEK 200 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~-----------------------------------~~~~~ 200 (389)
+++ |.|+|||+|+...|.|+++|++|.|.|+.++.+. ..++.
T Consensus 262 ySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 262 YSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred Eec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 665 6779999999999999999999999999998871 12346
Q ss_pred EEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCee
Q 016446 201 LLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 277 (389)
Q Consensus 201 l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~ 277 (389)
|+++|.|.|+-||+.. +.+++..+.||+.-|+.|.||||++++||+| |..|||||.. |+.+.+|.||-.+ |+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~-----VY 413 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA-----VY 413 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce-----eE
Confidence 9999999999999965 5678999999999999999999999999999 9999999996 9999999999988 89
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.|++|.|.++|+|||.| .|+|+||+++.++...|.||.
T Consensus 414 qvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~------------------------------- 451 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA------------------------------- 451 (480)
T ss_pred EEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC-------------------------------
Confidence 99999999999999876 899999999999999999998
Q ss_pred cccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|++|.+||||+.++||+.|+.+|||.
T Consensus 452 ---DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 ---DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ---ceEEEEEecCCCceeecCCCceEEEeec
Confidence 5899999999999999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=395.62 Aligned_cols=285 Identities=15% Similarity=0.217 Sum_probs=255.5
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
-+|-..+.||. +.|-|+.|+|+|..||+ |+-| .++||||+.+..+ +|+ ..|..|+.+|++| |
T Consensus 105 trCssS~~GH~-e~Vl~~~fsp~g~~l~t----GsGD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-P 167 (480)
T KOG0271|consen 105 TRCSSSIAGHG-EAVLSVQFSPTGSRLVT----GSGD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-P 167 (480)
T ss_pred ceeccccCCCC-CcEEEEEecCCCceEEe----cCCC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-C
Confidence 56888899975 99999999999999999 6677 8999999988765 666 5688889999998 9
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEE-EEec--CCcEEEEEEcC------CceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKISP------GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l-~tl~--~~~V~~vafS~------g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
||+.||||+-||+|++||.++|+++ .+|. ..+|.+++|-| ..+||++ +-|++|||||+.-|+|+.++.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec
Confidence 9999999999999999999999976 5665 46999999985 4567665 556899999999999999999
Q ss_pred ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc-----------CC------------
Q 016446 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------YE------------ 239 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs-----------pd------------ 239 (389)
+|+..|..|.+- ..+.|.++|.|+|||+|+...|.|.++|+||..+|+.++.| |-
T Consensus 245 gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 245 GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999984 24788889999999999999999999999999999999987 22
Q ss_pred -------------CcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 240 -------------NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 240 -------------g~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
|+.|+|++ |.|+-||+.. -+++..+.||+.. |+.|+|||||+||||+|.|
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSFD--------- 388 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASFD--------- 388 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeecc---------
Confidence 34599999 9999999984 6799999999986 8999999999999999986
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
++|||||-.+||.+.+|+||- ..|+.|++|.|.+.|+|||.|.|
T Consensus 389 --kSVkLW~g~tGk~lasfRGHv----------------------------------~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 389 --KSVKLWDGRTGKFLASFRGHV----------------------------------AAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred --cceeeeeCCCcchhhhhhhcc----------------------------------ceeEEEEeccCccEEEEcCCCce
Confidence 799999999999999999998 59999999999999999999999
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
+|+|+.
T Consensus 433 LKvw~V 438 (480)
T KOG0271|consen 433 LKVWDV 438 (480)
T ss_pred EEEEEe
Confidence 999984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=390.80 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=252.1
Q ss_pred cCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEe
Q 016446 41 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYS 119 (389)
Q Consensus 41 ~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~ 119 (389)
.....+|-.++||+|++.||++ +.+ ..+++|.++++.. .+.+. +|...+..+.|+|. ++..||||
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~----sws------G~~kvW~~~~~~~--~~~l~--gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATG----SWS------GLVKVWSVPQCNL--LQTLR--GHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEe----ecC------CceeEeecCCcce--eEEEe--ccccceeeEEEccCCCccceeee
Confidence 3345789999999999999995 466 7788999988854 33333 46666788999854 37899999
Q ss_pred cCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 120 AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 120 s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
+.||++|||++.+-.++..|.+ ..|-.|+|+| |++|+++ +.|.|-||||++|++++.-.+||...|.+++|. |
T Consensus 238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~ 313 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-P 313 (459)
T ss_pred ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhcccccccceeEec-C
Confidence 9999999999988788887764 6899999995 9999886 566899999999999999999999999999998 7
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
||..+++|+.|..-||||+++|.|+-.|.||.+.|.+|+|||+|..||||+ |+|+||||++ -.++.++.+|.+.
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl---- 389 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL---- 389 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----
Confidence 888888899999999999999999999999999999999999999999999 9999999998 6789999999987
Q ss_pred CeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 275 NTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 275 ~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|..|.|+| -|++|+|+|.| +|+|||.-.+++|+++|.||+
T Consensus 390 -VS~Vk~~p~~g~fL~TasyD-----------~t~kiWs~~~~~~~ksLaGHe--------------------------- 430 (459)
T KOG0272|consen 390 -VSQVKYSPQEGYFLVTASYD-----------NTVKIWSTRTWSPLKSLAGHE--------------------------- 430 (459)
T ss_pred -hhheEecccCCeEEEEcccC-----------cceeeecCCCcccchhhcCCc---------------------------
Confidence 79999999 79999999875 899999999999999999999
Q ss_pred cccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 354 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+|++||||+.|+|+|.|+|+|||.
T Consensus 431 -------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 -------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------cceEEEEeccCCceEEEeccCceeeecc
Confidence 5899999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=366.53 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=237.9
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|.-.-|+ ++.||++|.+|++|+|+..+++.+++|.||. +.|-.+.|+|. +..|||++ .| .+++||
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-~~v~~~~fhP~~~~~~lat~s----~D------gtvklw 246 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-SRVGAAVFHPVDSDLNLATAS----AD------GTVKLW 246 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-cceeeEEEccCCCccceeeec----cC------Cceeee
Confidence 3344555 9999999999999999999999999999985 89999999998 66899954 66 788899
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc-CCceEEEE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS-~g~~la~~ 158 (389)
++.+-.+. +.+- .|..-+..|+|. |+|++|++++.|.|-||||+++++++ +..|...|.+|+|. ||..+++
T Consensus 247 ~~~~e~~l--~~l~--gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t- 320 (459)
T KOG0272|consen 247 KLSQETPL--QDLE--GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT- 320 (459)
T ss_pred ccCCCcch--hhhh--cchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec-
Confidence 98664442 1122 233445679997 99999999999999999999999954 55667799999999 6776665
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
++.|..-||||++||.|++.|.+|...|.+|+|+ |.|..||+||.|+|+||||++...++.++.+|.+-|..|.|+|
T Consensus 321 --GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 --GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred --cCccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 4777899999999999999999999999999998 6677777789999999999999999999999999999999999
Q ss_pred -CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 239 -ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 239 -dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.|++|+|++ |+|+|||... +.++++|.||... |.++.+||||++|+|++.| .|||||.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~D-----------RT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSFD-----------RTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEeccC-----------ceeeecc
Confidence 899999999 9999999996 9999999999987 8999999999999999875 8999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=322.91 Aligned_cols=294 Identities=13% Similarity=0.164 Sum_probs=237.6
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc--ceeEe-eecccCceeEEEecC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~--~~l~~-~~~~~~~~~v~Fs~p 111 (389)
..-++++|. ++|..++..|.+..++.. ++.| ..+-+|++..-+...+ ++.|+ |+|+ +..|+.+ +
T Consensus 7 l~~tl~gh~-d~Vt~la~~~~~~~~l~s---asrD------k~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEGHT-DWVTALAIKIKNSDILVS---ASRD------KTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLS-S 73 (315)
T ss_pred eeeeecCCC-ceEEEEEeecCCCceEEE---cccc------eEEEEEEeccCccccCceeeeeeccceE--ecceEEc-c
Confidence 445788875 999999999996544442 4577 8888998844333333 33343 4444 3678998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec--CC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LH 186 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~--~~ 186 (389)
||++..|+|.|+++|+||+++|++.+.| |...|.+|+|| |+.+++++ +.|+||+|||+. |+|..++..+ ..
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~-g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTL-GVCKYTIHEDSHRE 149 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecC---CCcceeeeeeec-ccEEEEEecCCCcC
Confidence 9999999999999999999999976555 56789999999 68888765 677999999986 5888888755 57
Q ss_pred ceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 187 RNKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 187 ~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
.|..|.|+|.. .-+|+++|+|+|+|+||+++-++.+++.||++.++.+++||||.+.|||+ ||.+.|||++ |+++.+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 88999999543 56888899999999999999999999999999999999999999999999 9999999996 999999
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
|++. .. |++++|||+--.|+-+- +..|||||+.++.++.+|+---. +++
T Consensus 230 l~a~-~~-----v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~--------g~s----- 278 (315)
T KOG0279|consen 230 LEAF-DI-----VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGI--------GPS----- 278 (315)
T ss_pred ccCC-Ce-----EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhcccccc--------ccc-----
Confidence 9754 33 89999999988887654 35799999999999999864321 110
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+...-...++|||+||++|.+|..|+.||+|.
T Consensus 279 ------------~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 279 ------------SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ------------cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 001113567899999999999999999999997
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=339.21 Aligned_cols=291 Identities=15% Similarity=0.207 Sum_probs=245.0
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
-|+.|..|+|- --++|++++|+|||+||..||++.+.|.||. +.|.+|+|..-|++||++| .| -+++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt-~sv~di~~~a~Gk~l~tcS----sD------l~~~ 175 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT-DSVFDISFDASGKYLATCS----SD------LSAK 175 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc-cceeEEEEecCccEEEecC----Cc------cchh
Confidence 37899999998 6677888899999999999999999999986 7899999999999999965 55 3488
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLL 156 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la 156 (389)
+||..+- ......+-.+++. +.+|+|- |.|.+|+|++.|.|||.|++.+|.|++++.+ +||+.|+.+ ||.++|
T Consensus 176 LWd~~~~-~~c~ks~~gh~h~--vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 176 LWDFDTF-FRCIKSLIGHEHG--VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred heeHHHH-HHHHHHhcCcccc--eeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 9997442 1011223333333 4679998 8999999999999999999999999999974 699999999 888887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
++ +.|.|+++|-+.+++|...|+.|.+.+..|+|.+ ... .....+. .+..
T Consensus 252 s~---s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap-~~~--~~~i~~a----------------t~~~-------- 301 (406)
T KOG0295|consen 252 SC---SNDQTLRVWVVATKQCKAELREHEHPVECIAWAP-ESS--YPSISEA----------------TGST-------- 301 (406)
T ss_pred ec---CCCceEEEEEeccchhhhhhhccccceEEEEecc-ccc--Ccchhhc----------------cCCC--------
Confidence 65 6779999999999999999999999999999973 211 0000000 0000
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
..|+++.+++ |+|||+||++ |.||-||.||..| |.+++|+|-||||+|+.+ |+|+|+||++
T Consensus 302 -~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~ 364 (406)
T KOG0295|consen 302 -NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLK 364 (406)
T ss_pred -CCccEEEeecccceEEEEeccCCeEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEec
Confidence 1578999999 9999999997 9999999999999 799999999999999765 4999999999
Q ss_pred CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 315 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 315 tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+++|+.++..|+ .-|++++|..+--+++|||-|.++|+|.
T Consensus 365 ~~~cmk~~~ah~----------------------------------hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NLQCMKTLEAHE----------------------------------HFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeccCCCc----------------------------------ceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999 4899999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=320.99 Aligned_cols=285 Identities=12% Similarity=0.176 Sum_probs=249.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
++|.||. +.|.++-|+||.+.|+|+| .| ...-|||.-+..-.+..++ ...|+-.+||+ |.|+++
T Consensus 49 r~LkGH~-~Ki~~~~ws~Dsr~ivSaS----qD------GklIvWDs~TtnK~haipl----~s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHL-NKIYAMDWSTDSRRIVSAS----QD------GKLIVWDSFTTNKVHAIPL----PSSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecccc-cceeeeEecCCcCeEEeec----cC------CeEEEEEcccccceeEEec----CceeEEEEEEC-CCCCeE
Confidence 6899986 9999999999999999965 55 5666898766543222222 44577889998 999999
Q ss_pred EEecCCCeEEEEeCCCC--e----EEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 117 TYSAQDSIYKVFDLKNY--T----MLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 117 as~s~D~tiklWdl~~g--~----~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
|+|+-|...-|+++++- + .-+.+. ...+.++.|-|+..|+++ |.|+|.-|||+++|+.++.|.+|.+-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999854 2 224454 468999999976666675 567999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.+++++|.++..+++|+-|++.||||++.|.|+|+|.||...|++|.|-|+|.-|++|+ |+|.|++|++ .+.+..++
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys- 268 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS- 268 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence 99999855889999999999999999999999999999999999999999999999999 9999999998 78888887
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|.. .++.|++|+||..|++|..|..| .++.+||...|+.+..|.||.
T Consensus 269 ~~~--~~~gitSv~FS~SGRlLfagy~d-----------~~c~vWDtlk~e~vg~L~GHe-------------------- 315 (343)
T KOG0286|consen 269 HDS--IICGITSVAFSKSGRLLFAGYDD-----------FTCNVWDTLKGERVGVLAGHE-------------------- 315 (343)
T ss_pred cCc--ccCCceeEEEcccccEEEeeecC-----------CceeEeeccccceEEEeeccC--------------------
Confidence 333 23669999999999999998764 899999999999999999999
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++|.+|..+|||.-|+|||.|.++|||.
T Consensus 316 --------------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 --------------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 6999999999999999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=290.95 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=242.7
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeE
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 115 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~ 115 (389)
++++.+|. +.|.++.|+|+|+.|+++ +.| ..+++|++..++.. ..+ ..+...+..+.|+ |++++
T Consensus 2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~----~~~------g~i~i~~~~~~~~~--~~~--~~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKGHT-GGVTCVAFSPDGKLLATG----SGD------GTIKVWDLETGELL--RTL--KGHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcccC-CCEEEEEEcCCCCEEEEe----ecC------cEEEEEEeeCCCcE--EEE--ecCCcceeEEEEC-CCCCE
Confidence 45677764 899999999999999984 456 78999999877641 111 1233334579998 89999
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEE
Q 016446 116 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~ 192 (389)
|++++.|++|++||+.+++.+..+. ...|.+++|+| +.+++++ +.|+.|++||+.+++++..+..|...+..++
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS---SRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe---cCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 9999999999999999888777765 35799999995 5666554 2458999999999999999998888899999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCC
Q 016446 193 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
|+ |++..+++++.|+.|++||+++++++..+..|...+.+++|+|+++.+++++ |+.|++||+. ++++..+++|...
T Consensus 143 ~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 221 (289)
T cd00200 143 FS-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221 (289)
T ss_pred Ec-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc
Confidence 98 5566666667799999999999999999999999999999999999999888 9999999997 8999999888875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
+.+++|+|+++++++++. |+.|++||+.+++++..+.+|.
T Consensus 222 -----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~------------------------ 261 (289)
T cd00200 222 -----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHT------------------------ 261 (289)
T ss_pred -----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccC------------------------
Confidence 799999999999998864 4899999999999999999887
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+++|+|+++.|++++.|+.|++|+
T Consensus 262 ----------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 ----------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5899999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=335.37 Aligned_cols=291 Identities=17% Similarity=0.242 Sum_probs=250.0
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeE
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 115 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~ 115 (389)
..++.+++...|.++.|+|||+.|+++ +.| ..+++|+...++......+ .++...+..++|+ |||++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~------~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~ 217 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAA----SSD------GLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSY 217 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEc----cCC------CcEEEeecccccchhhccc--cccccceeeeEEC-CCCcE
Confidence 445666666889999999999998884 455 7888888866552111122 2344456789998 99999
Q ss_pred EEEecCCCeEEEEeC-CCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 116 LTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 116 Las~s~D~tiklWdl-~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
|++++.|++||+||+ ..+.+++++.+ ..|.+++|+ +|++++++ +.|++|||||+++|+|+.+|.+|.+.+..+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 999999999999999 56789999974 589999999 58777765 567999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCe--EEEEcccCCCc--eEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~--v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
+|. +++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|++|+++. |+++|+||+. ++++.++.
T Consensus 295 ~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 295 AFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 998 789999999999999999999999 78898888777 99999999999999999 9999999997 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
+|...+ .| +.+..++++|+++.+|+.| ++|++||+.+++.++.+.+|..
T Consensus 374 ~~~~~~-~~-~~~~~~~~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~~------------------ 422 (456)
T KOG0266|consen 374 GHSNLV-RC-IFSPTLSTGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHSK------------------ 422 (456)
T ss_pred ccCCcc-ee-EecccccCCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCCC------------------
Confidence 998752 23 4677779999999999875 9999999999999999999931
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEec--CCCcEEEccC
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 389 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs--~D~tIrlW~~ 389 (389)
..|..++++|..+++++++ .|+.|++|..
T Consensus 423 ---------------~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 423 ---------------AAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ---------------CceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4899999999999999999 7999999963
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=347.49 Aligned_cols=315 Identities=16% Similarity=0.173 Sum_probs=246.2
Q ss_pred CceEEEEecccceeeeeeecC----CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---Cccee
Q 016446 22 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFAL 94 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~----~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l 94 (389)
+|.+|+|+..+-+....+..+ |.+.|.+|+|+|+|+.||+ ++.| ..++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~lat----gg~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFAT----AGVN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEE----EeCC------CEEEEEECCcccccccccccce
Confidence 778999998654444333321 4689999999999999999 5577 78899987432110 00111
Q ss_pred EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 95 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 95 ~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
........+.+++|+++++.+||+++.|++|+|||+.+++++..+. ...|++|+|+| +.+|+++ +.|++|++|
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iW 603 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLW 603 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEE
Confidence 1111223356799986678999999999999999999999888775 46899999994 6788776 456899999
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEEEEcCCCcEEEEEc-C
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-N 248 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~fspdg~~laS~s-D 248 (389)
|+.+++++.++..+ ..+..+.|.++++..+++++.|++|++||+++++ ++.++.+|...|..+.|+ ++.+|+|++ |
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 99999999999865 6789999986778889999999999999998876 577889999999999997 678899998 9
Q ss_pred CeEEEEeCC-------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 249 RTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 249 ~tIklWd~~-------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
++|||||+. ++++.++.+|... ++.++|+|+|++||+|+.| ++|+||+...++.+..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~D-----------~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSET-----------NEVFVYHKAFPMPVLS 745 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeCC-----------CEEEEEECCCCCceEE
Confidence 999999985 3688999999876 7899999999999999865 9999999877765544
Q ss_pred ecCCC-CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 322 INATN-CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 322 l~gH~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.-.. +... .+ ....+...|.+|+|+|+|++|++|+.||+|++|+.
T Consensus 746 ~~~~~~~~~~--------------------~~--~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVS--------------------GL--EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCccc--------------------cc--ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 32211 0000 00 01122257999999999999999999999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=338.90 Aligned_cols=350 Identities=12% Similarity=0.149 Sum_probs=279.8
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCE--EEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS--LITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~--l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+.-+.++...+-.+|++..||.+++||...+.|+..|.||. ..|.++.|.|+=.+ |++ |..| .++++
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g-GvVssl~F~~~~~~~lL~s----g~~D------~~v~v 175 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG-GVVSSLLFHPHWNRWLLAS----GATD------GTVRV 175 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC-ceEEEEEeCCccchhheee----cCCC------ceEEE
Confidence 34455555669999999999999999999999999999987 99999999999665 444 7788 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-C-----Cc
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-P-----GI 153 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~-----g~ 153 (389)
|++.++.. -...+ ..|..++.+++|+ +|+..+.+++.|+.+.|||+.+++++.+++ -+.+.++++- . |+
T Consensus 176 wnl~~~~t--cl~~~-~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 176 WNLNDKRT--CLHTM-ILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE 251 (775)
T ss_pred EEcccCch--HHHHH-Hhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce
Confidence 99986654 01111 3577788999998 899999999999999999999999999998 4567787777 3 45
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEE-----------------------------------------------------
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKV----------------------------------------------------- 180 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~t----------------------------------------------------- 180 (389)
++.+. +.++.+++||.++|+|+++
T Consensus 252 ~~~Ta---G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 252 YIITA---GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred EEEEe---cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence 66665 3447888888888777653
Q ss_pred --------------------------------EeecCCceeEEEEEecCCC-----------------------------
Q 016446 181 --------------------------------FYHLLHRNKKVDFIEQFNE----------------------------- 199 (389)
Q Consensus 181 --------------------------------l~~~~~~~~~v~f~~~~~~----------------------------- 199 (389)
+.+|...+.+++.. .+|.
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 22333334444411 1122
Q ss_pred ------------------eEEEEeCCCcEEEEECCCCe---------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 200 ------------------KLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 200 ------------------~l~~~s~D~tIklWd~~tg~---------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
.++++|.|+|||+|++..-+ |..+-..|.+.|++|+.+|+.+++|||| |+|.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 44555666666666654311 1123467999999999999999999999 9999
Q ss_pred EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 016446 252 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 330 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~ 330 (389)
|||+++ ++++.+|.||.-. ||+|.|+|.-|.+|++|.| +|||||.+.+..|++||.||+.+|.
T Consensus 488 KiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~SgD-----------~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 488 KIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSGD-----------KTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred eeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccCC-----------ceEEEEEeccceeeeeecCccceeE
Confidence 999996 9999999999876 8999999999999998765 8999999999999999999998877
Q ss_pred cccccCCCC-------CCCccccc--cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 331 VDDELGSSS-------TGKSKKLN--KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 331 ~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+.|.+.+- .| -.|+| |+.+|..++.+|-+.||+++-+|++.+++||+.|+.|-+|.
T Consensus 552 ra~F~~~~~qliS~~adG-liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADG-LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeeeeCCcEEEeccCCC-cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 666666643 33 35666 68999999999999999999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=320.84 Aligned_cols=234 Identities=15% Similarity=0.198 Sum_probs=214.5
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-Ce
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GT 176 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t-G~ 176 (389)
..+..|-|. |+--+.|+++.|+|||+||..||++..+|++ +.|.+|+|+ -|.+||++ +.|-+|+|||.++ -+
T Consensus 109 ~~vt~v~~h-p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc---SsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 109 SSVTRVIFH-PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC---SSDLSAKLWDFDTFFR 184 (406)
T ss_pred cceeeeeec-cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec---CCccchhheeHHHHHH
Confidence 345668897 9999999999999999999999999888874 579999999 68888876 4457799999887 67
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
|++++.+|.+.+-+|.|. |-+++|++.+.|+|||.|++.+|.|+.++.+|..+|..|..+.||.++||++ |+|+++|=
T Consensus 185 c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 999999999999999999 6789999999999999999999999999999999999999999999999999 99999999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCC---------------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSD---------------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd---------------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+. ++|+..|.+|+.+ |..++|-|. |++++|+|. |+|||+||+.||.|+
T Consensus 264 ~~t~~~k~~lR~hEh~-----vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-----------DktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 264 VATKQCKAELREHEHP-----VECIAWAPESSYPSISEATGSTNGGQVLGSGSR-----------DKTIKIWDVSTGMCL 327 (406)
T ss_pred eccchhhhhhhccccc-----eEEEEecccccCcchhhccCCCCCccEEEeecc-----------cceEEEEeccCCeEE
Confidence 96 9999999999998 788888774 478888765 599999999999999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-||.||. ++|..++|+|-|++|+|..+|+++|+||.
T Consensus 328 ~tL~ghd----------------------------------nwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 328 FTLVGHD----------------------------------NWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred EEEeccc----------------------------------ceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9999998 69999999999999999999999999984
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=342.19 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=233.3
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.-|+.|+...+ ..+.|..||+|+.+||. |-.| -.|++|.+..-++ .+|-. .. +
T Consensus 368 Sic~YT~~nt~-~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl---~~lk~--------~~-----~ 420 (707)
T KOG0263|consen 368 SICMYTFHNTY-QGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKL---KKLKD--------AS-----D 420 (707)
T ss_pred cEEEEEEEEcC-CcceeEeecCCcchhhc----cccc------cEEEEEecchhhh---ccccc--------hh-----h
Confidence 45778887765 78999999999998888 5566 6777888754443 11211 11 1
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
...+-+.+.|-.+..-|...+....++ |.+.|.+++||| ..+|++ +|+|.++|||.+.|-.|+..++||..+|+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS---cSED~svRLWsl~t~s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS---CSEDSSVRLWSLDTWSCLVIYKGHLAPVW 497 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee---ccCCcceeeeecccceeEEEecCCCccee
Confidence 112223444555666676555444444 578999999996 555554 46779999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 267 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh 267 (389)
.|.|+ |.|-++|++|.|+|.+||....-.+++.+.||...|.+|.|.|+..|+|+|| |.|||+||+. |..++.|.||
T Consensus 498 dV~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH 576 (707)
T KOG0263|consen 498 DVQFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH 576 (707)
T ss_pred eEEec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence 99998 7899999999999999999999999999999999999999999999999999 9999999996 9999999999
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
..+ |.+|+|||+|++||||+. |+.|+|||+.+|+.+..|.+|+
T Consensus 577 ~~~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht--------------------- 619 (707)
T KOG0263|consen 577 KGP-----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHT--------------------- 619 (707)
T ss_pred CCc-----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhccc---------------------
Confidence 998 899999999999999876 4999999999999999999998
Q ss_pred cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|.||+||..||+|+.|++|+|||.
T Consensus 620 -------------~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 620 -------------GTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -------------CceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 58999999999999999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=294.33 Aligned_cols=277 Identities=11% Similarity=0.172 Sum_probs=236.1
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-+||++++|.|||+|...||+|.+|++.. +..|+.+-..||++.||.+ +. ..|||+|+.+++.+ +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~~LAaa----~~-------qhvRlyD~~S~np~---P 75 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKKDLAAA----GN-------QHVRLYDLNSNNPN---P 75 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcchhhhc----cC-------CeeEEEEccCCCCC---c
Confidence 37999999999999999999999999965 5899999999999999984 44 68999999999874 3
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCc-eEEEEecCCCCeeEEEE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~-~la~~~~~s~d~tiklW 170 (389)
+.+ ..+...+.+|.|- -||+.+.+||+|||+||||+..-.|.+.++ ...|.+|...|+| -|.++ ..++.|++|
T Consensus 76 v~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~---dqsg~irvW 151 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG---DQSGNIRVW 151 (311)
T ss_pred eeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee---cCCCcEEEE
Confidence 333 2355668899996 899999999999999999999988887776 4799999999755 44443 445899999
Q ss_pred EcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe------EEEEcccCCCceEEEEEcCCCcEE
Q 016446 171 SIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 171 d~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~------~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
|+.+-.|-..|. ...-.+.++... |||.+++++-.-|+..+|++-++. ++..++.|+..+..+.||||+++|
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 999887776664 333455677765 788888888899999999997653 466688999999999999999999
Q ss_pred EEEc-CCeEEEEeCCC--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 244 LTFR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 244 aS~s-D~tIklWd~~G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
|++| |.|+|||+.++ ++-..|+||+.| ||..+||.||+||++||. |+++||||+..|+.++
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVR 294 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceee
Confidence 9998 99999999985 455789999999 899999999999999865 5899999999999999
Q ss_pred EecCCC
Q 016446 321 KINATN 326 (389)
Q Consensus 321 tl~gH~ 326 (389)
..+||-
T Consensus 295 qy~gh~ 300 (311)
T KOG0315|consen 295 QYQGHH 300 (311)
T ss_pred ecCCcc
Confidence 999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=296.51 Aligned_cols=278 Identities=11% Similarity=0.128 Sum_probs=234.6
Q ss_pred ccEEEEEee---ccEEEEEecCceEEEEecc-----cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceee
Q 016446 4 TKVIEIVAA---RDIVFALAHSGVCAAFSRE-----TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 75 (389)
Q Consensus 4 ~~v~~i~~~---~~~~a~~~~~gtiklW~~~-----tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~ 75 (389)
-.|.+|... -+++.++++|.++-+|++. .|...+.|.|| +..|..|+.+|||++-.| ++.|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg~~alS----~swD------ 84 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDGNFALS----ASWD------ 84 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCCceEEe----cccc------
Confidence 357777666 7899999999999999864 48889999996 599999999999999988 5688
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----CCcEEEEEEcC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKISP 151 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----~~~V~~vafS~ 151 (389)
+.+++||+.+|+. ++ .|- .|..-+.+|+|| ||.+.|+|||.|+||||||. -|.|.++++ .+||.+|.|||
T Consensus 85 ~~lrlWDl~~g~~--t~-~f~-GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 85 GTLRLWDLATGES--TR-RFV-GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-LGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred ceEEEEEecCCcE--EE-EEE-ecCCceEEEEec-CCCceeecCCCcceeeeeee-cccEEEEEecCCCcCcEEEEEEcC
Confidence 9999999999975 33 343 355557889998 89999999999999999997 677888876 36999999997
Q ss_pred C---ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC
Q 016446 152 G---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 152 g---~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
. -+|++ .+.|+|+|+||+.+-++.+++.+|++.+..|+++ |||...++|+.|+.+-|||+..++++.++. |.
T Consensus 159 ~~~~p~Ivs---~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~ 233 (315)
T KOG0279|consen 159 NESNPIIVS---ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AF 233 (315)
T ss_pred CCCCcEEEE---ccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc-CC
Confidence 5 35654 4778999999999999999999999999999998 899999999999999999999999999865 77
Q ss_pred CceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec----cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 229 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~----gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
..|.+++|+|+--.|+.+-+..|||||++ +.++.+|+ |......+.+..++|||+||+.|.+|..|
T Consensus 234 ~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------- 304 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------- 304 (315)
T ss_pred CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC---------
Confidence 89999999999888877778889999997 87877665 22111111234799999999999999875
Q ss_pred CCCeEEEEeCC
Q 016446 304 SAGSINVSSIL 314 (389)
Q Consensus 304 ~D~tIklWd~~ 314 (389)
+.||+|.+.
T Consensus 305 --~~irv~qv~ 313 (315)
T KOG0279|consen 305 --NVIRVWQVA 313 (315)
T ss_pred --CcEEEEEee
Confidence 899999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=323.01 Aligned_cols=237 Identities=20% Similarity=0.326 Sum_probs=212.3
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEc-CCCe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSI-EDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~-~tG~ 176 (389)
+..+.|+ |||+.|++++.|+++++|++.+++ +++++. ...|.+++|| +|..++++ +.|++||+||+ ..|.
T Consensus 162 v~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~---s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 162 VTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG---SDDKTLRIWDLKDDGR 237 (456)
T ss_pred eEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe---cCCceEEEeeccCCCe
Confidence 4558998 899999999999999999998888 677763 5689999999 57788775 56799999999 6779
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
++++|.+|...+.+++|+ |.+..+++++.|++|||||+++|+|++.|.+|.+.|.+++|+|||++|++++ |++|++||
T Consensus 238 ~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 6678899999999999999999999999999999999999999999999999 99999999
Q ss_pred CC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 256 FR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 256 ~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. |+ |++++.++.... -|+.+.|||+|++|++++.| +++|+||+..++++.+..+|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~~---- 378 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASLD-----------RTLKLWDLRSGKSVGTYTGHSNL---- 378 (456)
T ss_pred CCCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecCC-----------CeEEEEEccCCcceeeecccCCc----
Confidence 97 88 688999888752 17999999999999998765 89999999999999999999830
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+..++++|+.++||++|+.|++|+.
T Consensus 379 ---------------------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 ---------------------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ---------------------------ceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 025667788999999999999999999983
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=312.77 Aligned_cols=336 Identities=13% Similarity=0.144 Sum_probs=270.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
++|....|- -..||++-.+|...|+.+-.=.+++.|.-.. ..|.+++||.-|+.||. |+.. +.++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~----g~~k-----lgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAF----GCSK-----LGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc-ceeeEEEecccCCEEEE----cCCc-----cceEEEE
Confidence 566666666 6789999999999999998678999998875 89999999999999988 4443 4577778
Q ss_pred EeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 82 YIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
+++.-.. ++. +.|+..+.++++| ||||++|+|+.|+.|||||...|-|+.|+. ...|.+|.|+ .|+.+++
T Consensus 336 eWqsEsY-----VlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 336 EWQSESY-----VLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred Eeeccce-----eeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 7776554 333 4567777889998 999999999999999999999999999996 4689999999 7888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+ +-|+|||.||+..+++.+||+.......+.-...|.|+.+.+|+ ..-.|.+|+++||+++.+|.||.++|.+++|
T Consensus 410 s---SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 410 S---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred e---ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 6 56689999999999999999865444433333336678888877 4478999999999999999999999999999
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|+|+.|||+| |+|||+||+- ...+.+|+-... |.+|+|+|||+.||.+.-| |.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTld-----------gqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATLD-----------GQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEec-----------ceEEEEEh
Confidence 99999999999 9999999983 447778873322 7999999999999998765 99999999
Q ss_pred CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 314 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 314 ~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.+..+.++.|-.+...+ |.. .+ ++-.--....+..+++.||+||+.|.+|++.+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~~~g----R~~-------~D---~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGG----RKE-------TD---RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhcccc----ccc-------cc---eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999999888875431000 000 00 000000111158999999999999999999999999863
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=307.69 Aligned_cols=354 Identities=12% Similarity=0.143 Sum_probs=297.4
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEeccccee--eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~--l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.|..|-++ ...++++|+|-++|||..+..+. .+.+++|. +.|..-+|..|...|.+++. | ..+.+
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk-d~VvacfF~~~~~~l~tvsk----d------G~l~~ 215 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK-DYVVACFFGANSLDLYTVSK----D------GALFV 215 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC-cceEEEEeccCcceEEEEec----C------ceEEE
Confidence 46777888 78999999999999999875555 66788875 89999999999999999864 4 34444
Q ss_pred eEec--c---------------------CCCCCccee-Ee-------eecccCceeEEEecCCCeEEEEecCCCeEEEEe
Q 016446 81 EYIR--R---------------------GKPDSGFAL-FE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 129 (389)
Q Consensus 81 ~~i~--~---------------------g~~~~~~~l-~~-------~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWd 129 (389)
|... - |+. ...+. |. .+...-+.+.+|. |.-.+||.|=..|...|+.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee-k~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEE-KTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEecCCCcccccccccccccccccccccchh-hhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEe
Confidence 4332 1 111 01111 11 0111345678997 8888999999999999999
Q ss_pred CCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC
Q 016446 130 LKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 130 l~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
+..-.+++.|+ +..|..++|+ -|.+||.+++. =+.+-+|+.++-.-+...++|...+.+++++ |||+.|++|++
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccC
Confidence 99999999887 5899999999 89999998544 3688999999888888888999999999998 89999999999
Q ss_pred CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 207 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 207 D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
|+.|||||.++|-|+.|+..|+..|.+|.|+..|+.++|+| |||||.||+. +++.+||...... .-.+||..|.
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----QfscvavD~s 446 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSCVAVDPS 446 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeEEEEcCC
Confidence 99999999999999999999999999999999999999999 9999999996 9999999875442 2578999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccc------
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE------ 358 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 358 (389)
|..+..|+.|. =-|.+|+++|||++-.|.||++.+.+-.+.+.++..++.++|+|.++|+....
T Consensus 447 GelV~AG~~d~----------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 447 GELVCAGAQDS----------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred CCEEEeeccce----------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 99999998873 57999999999999999999987777778888889999999999999988775
Q ss_pred --ccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 359 --ALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 359 --~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
....|.+|+|+|||+.||.+.-||.|.+||
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 334788999999999999999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=321.31 Aligned_cols=318 Identities=12% Similarity=0.124 Sum_probs=240.3
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.|.+--|+ +..+|.+.-|-.|++|.+ +.+-|+.+.... .+.- || ..+ +| -..+.-|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl-~p~kl~~lk~~~--~l~~----~d---~~s------ad------~~~~~~D 437 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSL-TPKKLKKLKDAS--DLSN----ID---TES------AD------VDVDMLD 437 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEec-chhhhccccchh--hhcc----cc---ccc------cc------hhhhhcc
Confidence 45566677 779999999999999999 577888888653 1111 11 111 22 0011111
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEe
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~ 159 (389)
-..+.. ...|. .|.+.+.+++|+ |+.++|+|+|.|++||||.+.+-.|+-.. |..+||.|+|+| |-++|++
T Consensus 438 ~~~~~~--~~~L~--GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata- 511 (707)
T KOG0263|consen 438 DDSSGT--SRTLY--GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA- 511 (707)
T ss_pred ccCCce--eEEee--cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec-
Confidence 111111 12244 366677899998 99999999999999999999998887555 457999999997 8888876
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd 239 (389)
+.|+|.|||....-+.++.|.+|..-+..|.|. |..-++++||.|+|+|+||+.+|.+++.|.||..+|.+++|||+
T Consensus 512 --s~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 512 --SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred --CCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 667999999999999999999999999999999 66789999999999999999999999999999999999999999
Q ss_pred CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 240 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 240 g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
|++||||+ |+.|+|||+. |+++..|.+|.+- |.++.||+||..||||+.| .+|++||+..-.
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~D-----------nsV~lWD~~~~~ 652 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGAD-----------NSVRLWDLTKVI 652 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCCC-----------CeEEEEEchhhc
Confidence 99999999 9999999996 8999999999664 8999999999999999875 899999987644
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
+. -..+|-....... +.+-+....+..+....-.+|..|-|..-.-.|+.|.
T Consensus 653 ~~-~~~~~~~~~~~~~---------~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 653 EL-LNLGHISTSNSAI---------TQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred cc-ccccccccccccc---------cccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 43 1113321000000 0000111223333333335999999988776666664
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=298.50 Aligned_cols=281 Identities=14% Similarity=0.195 Sum_probs=239.8
Q ss_pred eecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEecc--CCCCCcceeEee---------ecccCceeE
Q 016446 39 LNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES---------ESLKWPGFV 106 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~--g~~~~~~~l~~~---------~~~~~~~~v 106 (389)
+.+| ...|.+-+|+|--+ .|++ ++.| -.+++|++.. ... ..+..|.| ..-..+.++
T Consensus 174 vl~~-~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~-~~q~~lrh~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 174 VLRH-ESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIG-STQLVLRHCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred eccC-CCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhcccc-chhhhhhhhhhhhcccCCccCCcceE
Confidence 4444 58899999999988 7777 5666 5667777753 111 01111111 012345679
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+++ -+|..||+|+.||.+|+|+. +|.++.+|+ ..+|.+++++ .|.+|+++ +-|+|+-|||..+|++-+.|+.
T Consensus 242 ~Wn-~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 242 DWN-NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred Eec-CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEec---cCCccEEEEeccCceEEEeeee
Confidence 998 79999999999999999995 899888886 4799999999 89999876 5679999999999999999999
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 261 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l 261 (389)
|..+-..|.+. +++.+++.+-|+.|+++-+...++..++.||.+.|.++-|.|.|.+|+|+| |+|+|||... +.+.
T Consensus 317 ~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 317 HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred ccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 98887888884 478999999999999999999999999999999999999999999999999 9999999984 8999
Q ss_pred EEeccCcCCcCCCCeeEEEECCC---------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 262 TSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 262 ~tl~gh~~~~~~~~v~sv~fSpd---------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
..|.+|... |.++.+||+ |..||+++. |+|||+||+..|+|+++|..|+
T Consensus 395 ~~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~------ 452 (524)
T KOG0273|consen 395 HDLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQ------ 452 (524)
T ss_pred hhhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCC------
Confidence 999999865 789999996 557777765 4899999999999999999999
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|++|+|||||++||||+.||-|.+|+
T Consensus 453 ----------------------------~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 453 ----------------------------EPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ----------------------------CceEEEEecCCCcEEEecCCCCeeEecc
Confidence 6999999999999999999999999997
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=263.62 Aligned_cols=274 Identities=18% Similarity=0.255 Sum_probs=237.9
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|..+.++ +++|++++.+|.+++|+..+++.+..+..+. ..+..+.|+|+++.|+++ +.| ..+++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~----~~~------~~i~i 77 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASG----SSD------KTIRL 77 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEE----cCC------CeEEE
Confidence 5789999999 6999999999999999999888888888875 788999999999999884 456 78999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~ 157 (389)
|++..++.. . .+. .+...+..+.|+ |+++++++++.|+.|++||+.+++++..+. ...|.+++|+| +.++++
T Consensus 78 ~~~~~~~~~--~-~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 78 WDLETGECV--R-TLT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred EEcCcccce--E-EEe-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 999876541 1 121 233356779998 789999999999999999999899888876 45799999996 666665
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
+ +.|+.|++||+.+++++..+..|...+..+.|+ |++..+++++.|+.|++||+.+++++..+..|...+.+++|+
T Consensus 153 ~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 153 S---SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred E---cCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 4 245899999999999999999888899999998 667789898889999999999999999999999999999999
Q ss_pred CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 238 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|+++++++++ |+.|++||+. ++++..+.+|... |.+++|+|+|++|++++. |++|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999997 8999999988765 799999999999999876 48999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=295.73 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=256.3
Q ss_pred cEEEEEecCceEEEEeccc--ceeeeeee--------c---CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 14 DIVFALAHSGVCAAFSRET--NRRICFLN--------V---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~t--g~~l~tl~--------~---~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.++|+++.|-+.|+|++.. +.+...+- + ....-|.+++||-+|..||+ |..| ..++|
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat----G~~~------G~~ri 261 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT----GSED------GEARI 261 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE----eecC------cEEEE
Confidence 3899999999999999852 22221100 1 11246999999999999999 5678 88999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEcCCceEEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS~g~~la~~ 158 (389)
|+ ..|.+.. .| ..|.+.|.++.++ .+|.+|+|++-|+|+-|||..+|+.. ++|+...-.+|.+=....+|++
T Consensus 262 w~-~~G~l~~--tl--~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 262 WN-KDGNLIS--TL--GQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS 335 (524)
T ss_pred Ee-cCchhhh--hh--hccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec
Confidence 99 5666521 12 3577788899997 89999999999999999999999865 4555444356666667777765
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+.|+.|++..+..-...+||.||.+.|..+.|. |.+..|+++|.|+|+|||++..+.+.+-|.+|...|+.+.+||
T Consensus 336 ---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 336 ---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred ---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 556899999998888999999999999999998 6788888899999999999999999999999999999999999
Q ss_pred CC---------cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 EN---------QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg---------~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
+| -.+|+++ |+|||+||+. |.++.+|..|+.+ |++|+|||||+|||||+.| |.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsGs~d-----------g~ 475 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASGSLD-----------GC 475 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEecCCC-----------Ce
Confidence 64 4688888 9999999996 9999999999988 8999999999999999875 99
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
|.||++++|++.+.+++-. .|..|.|+.+|..|..+-.|+.|.+=
T Consensus 476 V~iws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGTG-----------------------------------GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eEeccccchheeEeecCCC-----------------------------------eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999998753 79999999999999999999998875
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
|
T Consensus 521 d 521 (524)
T KOG0273|consen 521 D 521 (524)
T ss_pred E
Confidence 4
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=281.88 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=244.7
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
++-.+.+| ...|+.+.|+|+|..+|| |+.| ++|.||.+ -|++.+.-.+ ..+.+.+-.|.|. +||.
T Consensus 39 p~m~l~gh-~geI~~~~F~P~gs~~aS----gG~D------r~I~LWnv-~gdceN~~~l--kgHsgAVM~l~~~-~d~s 103 (338)
T KOG0265|consen 39 PIMLLPGH-KGEIYTIKFHPDGSCFAS----GGSD------RAIVLWNV-YGDCENFWVL--KGHSGAVMELHGM-RDGS 103 (338)
T ss_pred hhhhcCCC-cceEEEEEECCCCCeEee----cCCc------ceEEEEec-cccccceeee--ccccceeEeeeec-cCCC
Confidence 34456665 589999999999999999 7899 99999995 4554322222 2466667779998 8999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.|.|+|.|++|+.||+++|++++.++ ..-|+++.-+ -|..|+.+ .+.|+|+||||+++-+++++++. .-.+.+|
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S--gsdD~t~kl~D~R~k~~~~t~~~-kyqltAv 180 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS--GSDDGTLKLWDIRKKEAIKTFEN-KYQLTAV 180 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe--cCCCceEEEEeecccchhhcccc-ceeEEEE
Confidence 99999999999999999999998876 4578999977 37777655 56789999999999999999952 2467899
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC----C-cEEEEec
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----G-ELVTSFE 265 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~----G-~~l~tl~ 265 (389)
.|. ..++...+|+-|+.||+||++.++++.++.||.+.|..+..+|+|.++.|-+ |.|+++||+. + .|++.++
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred Eec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 997 6688999999999999999999999999999999999999999999999999 9999999973 3 4799999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
||...-. ......++||+++++..||.| +.+.+||..+-.++..|.||.
T Consensus 260 g~~hnfe-knlL~cswsp~~~~i~ags~d-----------r~vyvwd~~~r~~lyklpGh~------------------- 308 (338)
T KOG0265|consen 260 GHIHNFE-KNLLKCSWSPNGTKITAGSAD-----------RFVYVWDTTSRRILYKLPGHY------------------- 308 (338)
T ss_pred cchhhhh-hhcceeeccCCCCcccccccc-----------ceEEEeecccccEEEEcCCcc-------------------
Confidence 9886311 124678999999999998765 899999988779999999998
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..|..++|+|.-.+|.|++.|++|-|
T Consensus 309 ---------------gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 309 ---------------GSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ---------------eeEEEeeecCCCcEEEEeccCceeEe
Confidence 48999999999999999999999865
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=288.82 Aligned_cols=296 Identities=15% Similarity=0.190 Sum_probs=252.8
Q ss_pred EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeE
Q 016446 28 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFV 106 (389)
Q Consensus 28 W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v 106 (389)
|+.. .++-+.+++|. ++|+||++.|-++.+++ |+.| ++++|||+++|++ ..+ .++..-+..|
T Consensus 137 WHap-wKl~rVi~gHl-gWVr~vavdP~n~wf~t----gs~D------rtikIwDlatg~L-----kltltGhi~~vr~v 199 (460)
T KOG0285|consen 137 WHAP-WKLYRVISGHL-GWVRSVAVDPGNEWFAT----GSAD------RTIKIWDLATGQL-----KLTLTGHIETVRGV 199 (460)
T ss_pred ccCc-ceehhhhhhcc-ceEEEEeeCCCceeEEe----cCCC------ceeEEEEcccCeE-----EEeecchhheeeee
Confidence 6664 78888899986 99999999999999999 6678 9999999999997 222 2355556779
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+|| +--.||-|++.|++||-|||+..+.++..++ ..|.+++..| -..|+++ +.|.++|+||++|...+.+|.|
T Consensus 200 avS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 200 AVS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred eec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEecC
Confidence 998 7788999999999999999999888888876 4899999997 6677665 5568999999999999999999
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 262 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~ 262 (389)
|...|.+|.|. |.+.+++++|.|.||||||++.|+...++..|...|++++..|.-.+|||++-..||-|++- |+.++
T Consensus 276 H~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 276 HTNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ 354 (460)
T ss_pred CCCcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh
Confidence 99999999997 56778999999999999999999999999999999999999999999999995568999995 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
.|.+|..- +++++...||-+ ++|+. .|+|-.||.++|-+-+.++. ...+|+-..
T Consensus 355 nlsgh~~i-----intl~~nsD~v~-~~G~d-----------ng~~~fwdwksg~nyQ~~~t---------~vqpGSl~s 408 (460)
T KOG0285|consen 355 NLSGHNAI-----INTLSVNSDGVL-VSGGD-----------NGSIMFWDWKSGHNYQRGQT---------IVQPGSLES 408 (460)
T ss_pred ccccccce-----eeeeeeccCceE-EEcCC-----------ceEEEEEecCcCcccccccc---------cccCCcccc
Confidence 99999875 799999998865 55543 49999999999877665532 122232110
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-..|++.+|+.-|..|+||..|++||+|.
T Consensus 409 -----------------EagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 409 -----------------EAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -----------------ccceeEEeecccCceEEeccCCcceEEEe
Confidence 04899999999999999999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=275.14 Aligned_cols=288 Identities=14% Similarity=0.170 Sum_probs=225.9
Q ss_pred eeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.++++++|. +.++++||+|- |..||| ++.| +.+++|+...++.-.-.......+...+++|||+ |.|
T Consensus 6 ~~~~~~gh~-~r~W~~awhp~~g~ilAs----cg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSGHK-DRVWSVAWHPGKGVILAS----CGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecCCC-CcEEEEEeccCCceEEEe----ecCC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 456788875 89999999998 888888 6788 9999999765543111111112355668899998 999
Q ss_pred eEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC---eEEEEEeecC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLL 185 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG---~~l~tl~~~~ 185 (389)
++||+||.|.|+-||.-..++ |+.+|. .++|.+|+|| +|.+||++ +.|+.|=+|.+..+ +|+..|+.|+
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999999999999866555 788876 4689999999 79999987 55689999998744 4889999999
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 261 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l 261 (389)
+-|+-|.|. |..+.|+++|+|.|||+|.-. .-+|.++|.+|...|++++|.|.|+.|+|++ |+||+||..-
T Consensus 151 qDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---- 225 (312)
T KOG0645|consen 151 QDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---- 225 (312)
T ss_pred ccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----
Confidence 999999998 667888999999999999877 3469999999999999999999999999999 9999999853
Q ss_pred EEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC--eEEEEecCCCCCCCcccccCCC
Q 016446 262 TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 262 ~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
.++.+ |... +..|++- .-.|||++.| +.|+|+--..+ +....+-.
T Consensus 226 ~~~~~~~sr~-----~Y~v~W~--~~~IaS~ggD-----------~~i~lf~~s~~~d~p~~~l~~-------------- 273 (312)
T KOG0645|consen 226 TDLSGMHSRA-----LYDVPWD--NGVIASGGGD-----------DAIRLFKESDSPDEPSWNLLA-------------- 273 (312)
T ss_pred cCcchhcccc-----eEeeeec--ccceEeccCC-----------CEEEEEEecCCCCCchHHHHH--------------
Confidence 22322 3333 6788886 5678998764 89999974321 01111111
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCC-CCEEEEecCCCcEEEccC
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd-g~~LaSgs~D~tIrlW~~ 389 (389)
...+.|-..|++|.++|. +..|+||+.||+|++|.+
T Consensus 274 ---------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 274 ---------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ---------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 112223368999999995 789999999999999964
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=275.53 Aligned_cols=276 Identities=11% Similarity=0.177 Sum_probs=237.0
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.||+++-++ ...|+++|.||.+-+||.-|.+..+.++-. +.+|++.||+|-|+.+|. |+-| ....|+
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg~~VAc----GGLd------N~Csiy 124 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSGNFVAC----GGLD------NKCSIY 124 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCCCeEEe----cCcC------ceeEEE
Confidence 689999999 889999999999999999999888888876 589999999999999999 7788 777788
Q ss_pred EeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC--CceE
Q 016446 82 YIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIML 155 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~--g~~l 155 (389)
++...+-....+.-. ..|.+++....|- +|++ |+++|.|.|.-|||+++|+.+..+++ ..|.+++++| ++++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEc-CCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 876442211111110 2355666678996 6665 55688999999999999999988875 5799999996 7777
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC--CCceEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSA 233 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh--~~~v~s 233 (389)
+++ +-|++.||||++.|.|.++|++|..-|++|.|. |+|..+++||+|+|+||+|++..+.+.++... ...|++
T Consensus 203 vSg---~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 203 VSG---GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred Eec---ccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence 765 567999999999999999999999999999998 78999999999999999999998888877643 458999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeC-CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~-~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
|+||--|++|..|. |.++.+||. .|+.+-.|.||.+. |..+..||||.-+++||.| .++|||
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~av~TgSWD-----------s~lriW 342 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMAVATGSWD-----------STLRIW 342 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcEEEecchh-----------Hheeec
Confidence 99999999999998 999999998 59999999999998 8999999999999999876 799999
Q ss_pred e
Q 016446 312 S 312 (389)
Q Consensus 312 d 312 (389)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 4
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=299.32 Aligned_cols=273 Identities=16% Similarity=0.258 Sum_probs=224.0
Q ss_pred eeeeeecC--CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 35 RICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 35 ~l~tl~~~--~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.+.++|-. ....|+++-| |.+.++| |..| ++|+|||...-.+ ...|. +|.|.+..+.|.
T Consensus 186 ~~~rinc~Se~skgVYClQY--DD~kiVS----GlrD------nTikiWD~n~~~c--~~~L~--GHtGSVLCLqyd--- 246 (499)
T KOG0281|consen 186 LLQRINCRSENSKGVYCLQY--DDEKIVS----GLRD------NTIKIWDKNSLEC--LKILT--GHTGSVLCLQYD--- 246 (499)
T ss_pred eeeeecCCcccCCceEEEEe--cchhhhc----cccc------CceEEeccccHHH--HHhhh--cCCCcEEeeecc---
Confidence 34445443 2346888877 6687888 6677 9999999876655 22243 355666667774
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe---EEEEEeecCCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~~~~~ 187 (389)
.+.|+|||.|.||++||+++|+++.++- .+.|..+.|+.|-++ ++ +.|.+|++||+..-. |.+.|.||...
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mv-tc---SkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMV-TC---SKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEE-Ee---cCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 6799999999999999999999998873 579999999988776 44 567999999987543 44678899999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
|+.|.|. +.+|+++|.|.|||+|+..|+++++++.||.-.|-+ .-+.|++++||| |.||||||++ |.|++.|+
T Consensus 323 VNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 323 VNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred eeeeccc---cceEEEecCCceEEEEeccceeeehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 9999986 579999999999999999999999999999977643 367899999998 9999999998 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---------EEEEecCCCCCCCcccccC
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELG 336 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---------~l~tl~gH~~~~~~~~~~~ 336 (389)
||... |..|.| |.+.|+||.- ||+||+||+.++. |+.++-.|+
T Consensus 398 GHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~lv~hs---------- 449 (499)
T KOG0281|consen 398 GHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTLVEHS---------- 449 (499)
T ss_pred chHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhhhhcc----------
Confidence 99987 789999 8899999866 5999999998765 555555555
Q ss_pred CCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 337 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|..+-|. ...|+|.+.|-||-+||.
T Consensus 450 ------------------------gRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 450 ------------------------GRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred ------------------------ceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 699999995 567999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=267.57 Aligned_cols=261 Identities=10% Similarity=0.127 Sum_probs=217.5
Q ss_pred EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--E
Q 016446 58 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M 135 (389)
Q Consensus 58 ~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~ 135 (389)
.|+| .++| ++||+|...+|++..+ +. -.-+++-.++.. ||++.||.|+ ...|||+|+.+++ +
T Consensus 12 iLvs----A~YD------hTIRfWqa~tG~C~rT--iq--h~dsqVNrLeiT-pdk~~LAaa~-~qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 12 ILVS----AGYD------HTIRFWQALTGICSRT--IQ--HPDSQVNRLEIT-PDKKDLAAAG-NQHVRLYDLNSNNPNP 75 (311)
T ss_pred EEEe----ccCc------ceeeeeehhcCeEEEE--Ee--cCccceeeEEEc-CCcchhhhcc-CCeeEEEEccCCCCCc
Confidence 5566 5699 9999999999999322 11 122345668997 9999999776 5789999999887 5
Q ss_pred EEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEE
Q 016446 136 LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 212 (389)
Q Consensus 136 l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl 212 (389)
+.++. ...|.+|.|. +|.+++++ ++|+|+||||++.-+|-+.|+ |..+|++|... |...-|+++-.+|.|++
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRV 150 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEec---CCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEE
Confidence 66664 5789999999 99999875 677999999999988888887 45899999987 55567778889999999
Q ss_pred EECCCCeEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc------EEEEeccCcCCcCCCCeeEEEECC
Q 016446 213 LDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------LVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 213 Wd~~tg~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~------~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
||+....|.+.|.. -.-.|.+++.-|||.+|+.+. -|+.-+|++- ++ .+..|+.|... +....|||
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSP 225 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSP 225 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECC
Confidence 99999988776543 345899999999999999998 8999999984 32 35567778765 78999999
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+++||++|.| +|+|||++.+= +.-..|.||+ .+
T Consensus 226 d~k~lat~ssd-----------ktv~iwn~~~~~kle~~l~gh~----------------------------------rW 260 (311)
T KOG0315|consen 226 DVKYLATCSSD-----------KTVKIWNTDDFFKLELVLTGHQ----------------------------------RW 260 (311)
T ss_pred CCcEEEeecCC-----------ceEEEEecCCceeeEEEeecCC----------------------------------ce
Confidence 99999998765 89999998876 6677899999 69
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 363 ITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 363 V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
||.++||.||++|++||.|+++|||+.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999999999999999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=302.11 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=227.8
Q ss_pred cEEEEEeec---cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 5 KVIEIVAAR---DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 5 ~v~~i~~~~---~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.|.+.-|-| +.+|+++.++.+|+++..+-.|- -+.|| .+.|.|+.....|..||| ++.| ..++||
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH-~e~vlSL~~~~~g~llat----~sKD------~svilW 392 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGH-TEAVLSLDVWSSGDLLAT----GSKD------KSVILW 392 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCc-hhheeeeeecccCcEEEE----ecCC------ceEEEE
Confidence 466777776 99999999999999998754544 56665 699999998888999999 5577 899999
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-----EEEE------ecCCcEEEEEEc
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYS------ISDKHVQEIKIS 150 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-----~l~t------l~~~~V~~vafS 150 (389)
-+..+............|.+.+..|+++.---..++|+|+|.|+|+|++...+ ..++ .|+..|++|+++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 88333221010011134556678899973333689999999999999986522 1121 145689999999
Q ss_pred CCc-eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC
Q 016446 151 PGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 229 (389)
Q Consensus 151 ~g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~ 229 (389)
|+. .+|+ +|.|+|.|||+++.++++.+|.||...+++|.|+ |-++.+|++|.|+|||||.+++.+|+++|.||..
T Consensus 473 ~ndkLiAT---~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 473 PNDKLIAT---GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred CCCceEEe---cccccceeeecccCceEEEEeeCCccceEEEEec-cccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 755 5554 4788999999999999999999999999999998 5567888889999999999999999999999999
Q ss_pred ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 230 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.|-.+.|-.+|+.|+|+. ||-||||++. ++|+++|.+|.+. ||+++-+|++.++++|+. ||.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr-----vWaL~~~~~~~~~~tgg~-----------Dg~ 612 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR-----VWALSVSPLLDMFVTGGG-----------DGR 612 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce-----eEEEeecCccceeEecCC-----------CeE
Confidence 999999999999999997 9999999996 9999999999987 899999999999999876 499
Q ss_pred EEEEe
Q 016446 308 INVSS 312 (389)
Q Consensus 308 IklWd 312 (389)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=291.28 Aligned_cols=268 Identities=12% Similarity=0.190 Sum_probs=223.3
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
-.|+++..-.+.++++++|.|||+||..+-+|++.|.||. ..|-++-| |...||| |+-| -++++||+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt-GSVLCLqy--d~rviis----GSSD------sTvrvWDv 264 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHT-GSVLCLQY--DERVIVS----GSSD------STVRVWDV 264 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCC-CcEEeeec--cceEEEe----cCCC------ceEEEEec
Confidence 3689999999999999999999999998889999999985 89999988 5578888 6677 89999999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEe--cCCcEEEEEEcCCceEEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI--SDKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl--~~~~V~~vafS~g~~la~~ 158 (389)
.+|++.+ .+|. |...+..+.|+ +| +++++|.|.+|++||+.... +.+.| |...|+.|.|++- +++++
T Consensus 265 ~tge~l~--tlih--HceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsA 336 (499)
T KOG0281|consen 265 NTGEPLN--TLIH--HCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSA 336 (499)
T ss_pred cCCchhh--HHhh--hcceeEEEEEe--CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEe
Confidence 9999843 3553 33345668997 56 88999999999999997655 22333 4468999999854 66665
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+.|.|||+|++.|++++++|.+|...+..+++. +..+++||.|.||||||++.|.|++.|+||..-|+.|.|.
T Consensus 337 ---SgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd- 409 (499)
T KOG0281|consen 337 ---SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD- 409 (499)
T ss_pred ---cCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-
Confidence 567999999999999999999877666666653 6677778999999999999999999999999999999994
Q ss_pred CCcEEEEEc-CCeEEEEeCC-Cc---------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 ENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~-G~---------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.+.++||. ||+||+||++ +. |+.++..|.+. |..+.| |...|+|.+.| .|
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR-----VFrLQF--D~fqIvsssHd-----------dt 470 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR-----VFRLQF--DEFQIISSSHD-----------DT 470 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccce-----eEEEee--cceEEEeccCC-----------Ce
Confidence 56799998 9999999986 43 78889999887 799999 78888887654 79
Q ss_pred EEEEeCCCCeE
Q 016446 308 INVSSILTGKC 318 (389)
Q Consensus 308 IklWd~~tg~~ 318 (389)
|-|||...|-.
T Consensus 471 ILiWdFl~~~~ 481 (499)
T KOG0281|consen 471 ILIWDFLNGPP 481 (499)
T ss_pred EEEEEcCCCCc
Confidence 99999987643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=303.22 Aligned_cols=273 Identities=17% Similarity=0.254 Sum_probs=229.9
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
+.+++...+.+..|. +..+++ +.++ ..+++|+..+|+..... + .+|.+.++.++|. .-+.+|.+
T Consensus 203 ~~~~~~~~~~~~q~~--~~~~~~----~s~~------~tl~~~~~~~~~~i~~~-l--~GH~g~V~~l~~~-~~~~~lvs 266 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH--DGFFKS----GSDD------STLHLWDLNNGYLILTR-L--VGHFGGVWGLAFP-SGGDKLVS 266 (537)
T ss_pred ecccCcchhhhheee--cCeEEe----cCCC------ceeEEeecccceEEEee-c--cCCCCCceeEEEe-cCCCEEEE
Confidence 333555678888887 355677 5677 77788999888862111 1 2577778899995 35789999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 119 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
||.|+|+|+||..+|+|..++.+ ..|.++.+-+.. +.+ ++.|.|||+|++++|++++++.+|...|++|...
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~-~~s---gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFL-LVS---GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEccCce-Eee---ccCCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 99999999999999999999974 567777765443 323 5778999999999999999999999999999986
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPD 273 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~ 273 (389)
+..+++|+.|++|++||+.+++|+++|.||..+|+++.|.+. ..+.+|+ |++||+||++ + +|+.+|.+|...
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--- 415 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--- 415 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc---
Confidence 789999999999999999999999999999999999988777 8899999 9999999997 6 799999999876
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccccccce
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|..+. ..+++|+|++.| ++||+||+++|+|++++.+ |.
T Consensus 416 --v~~l~--~~~~~Lvs~~aD-----------~~Ik~WD~~~~~~~~~~~~~~~-------------------------- 454 (537)
T KOG0274|consen 416 --VSSLL--LRDNFLVSSSAD-----------GTIKLWDAEEGECLRTLEGRHV-------------------------- 454 (537)
T ss_pred --ccccc--cccceeEecccc-----------ccEEEeecccCceeeeeccCCc--------------------------
Confidence 55554 489999998875 8999999999999999999 54
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|+++++. -..+++++.|+++++||.
T Consensus 455 --------~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 455 --------GGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred --------ccEEEeecC--cceEEEEecCCeeEEEec
Confidence 488888887 568999999999999984
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=307.75 Aligned_cols=274 Identities=11% Similarity=0.114 Sum_probs=223.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEeccc----ce----eeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCc
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRET----NR----RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFS 71 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~t----g~----~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~ 71 (389)
.+.|..|.|+ +++||+++.|++|+||+..+ +. ++..+.+ + ..|.+++|+|. +..||+ ++.|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~~~~~~las----~~~D-- 554 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R-SKLSGICWNSYIKSQVAS----SNFE-- 554 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c-CceeeEEeccCCCCEEEE----EeCC--
Confidence 3568899998 89999999999999999743 21 2334443 2 67999999985 778888 4577
Q ss_pred ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS 150 (389)
..++|||+.+++.. ..+ ..+...+.+++|++++|.+|++|+.|++||+||+.+++++.++. ...|.+++|+
T Consensus 555 ----g~v~lWd~~~~~~~---~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 555 ----GVVQVWDVARSQLV---TEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred ----CeEEEEECCCCeEE---EEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 89999999887651 111 24556678999985689999999999999999999999988886 4589999996
Q ss_pred -C-CceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC------CeEE
Q 016446 151 -P-GIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------AELM 221 (389)
Q Consensus 151 -~-g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t------g~~~ 221 (389)
+ |.+||++ +.|++|++||+.+++ .+.++.+|...+..|.|. ++..+++++.|++|||||+.. +.++
T Consensus 627 ~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 627 SESGRSLAFG---SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred CCCCCEEEEE---eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 3 8888876 456899999998876 578888999999999995 578999999999999999974 3678
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe-------------ccCcCCcCCCCeeEEEECCCCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl-------------~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.++.+|...+..++|+|++++||+++ |++|++|+.. +..+.++ ..|.. .|.+++|+|+|+
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~V~~v~ws~~~~ 776 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-----FISSVCWRGQSS 776 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-----EEEEEEEcCCCC
Confidence 89999999999999999999999999 9999999985 5433222 12222 289999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|++|+. ||+||||++
T Consensus 777 ~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANS-----------TGNIKILEM 792 (793)
T ss_pred eEEEecC-----------CCcEEEEec
Confidence 9999876 499999985
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=289.56 Aligned_cols=274 Identities=16% Similarity=0.136 Sum_probs=226.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
-.|+.|.|.|+|..|++++. - ....||.... +++...+ ++|-..|..+.+| +||..++||+.||.
T Consensus 97 c~V~~v~WtPeGRRLltgs~----S------GEFtLWNg~~--fnFEtil--QaHDs~Vr~m~ws-~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ----S------GEFTLWNGTS--FNFETIL--QAHDSPVRTMKWS-HNGTWMISGDKGGM 161 (464)
T ss_pred cceeeEEEcCCCceeEeecc----c------ccEEEecCce--eeHHHHh--hhhcccceeEEEc-cCCCEEEEcCCCce
Confidence 58999999999999999653 3 4556676311 1111112 2233446789998 89999999999999
Q ss_pred EEEEeCCCCeEEEEe---cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 125 YKVFDLKNYTMLYSI---SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 125 iklWdl~~g~~l~tl---~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
||+|+.+ -+.+..+ +.+.|+++|||| +..++++ ++|++|||||..-.+....|.+|.--+++|++. |.-+.
T Consensus 162 iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kgL 236 (464)
T KOG0284|consen 162 IKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKGL 236 (464)
T ss_pred EEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccC-Cccce
Confidence 9999974 3333333 347899999995 7777765 667999999999999999999998899999999 66788
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeE
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 278 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~s 278 (389)
++++|.|.+|||||.++|+|+.++.+|...|.++.|+|++.+|+|+| |.++|+.|++ =+.+.++++|... |++
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~ 311 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTS 311 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----hee
Confidence 88999999999999999999999999999999999999999999999 9999999998 7788999999876 799
Q ss_pred EEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 279 IYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 279 v~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
++++|=- .++++|+ .||.|..|.+-..+.+..+ .+|.
T Consensus 312 ~~WhP~~~~lftsgg-----------~Dgsvvh~~v~~~~p~~~i~~AHd------------------------------ 350 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGG-----------SDGSVVHWVVGLEEPLGEIPPAHD------------------------------ 350 (464)
T ss_pred eccccccccceeecc-----------CCCceEEEeccccccccCCCcccc------------------------------
Confidence 9999954 5556654 4699999998755555554 3454
Q ss_pred ccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 357 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..||+++|+|=|++|+|||.|+++|+|.
T Consensus 351 ----~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 ----GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ----cceeeeeccccceeEeecCCCcceeeec
Confidence 6899999999999999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=278.21 Aligned_cols=235 Identities=17% Similarity=0.283 Sum_probs=216.9
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcC
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~ 173 (389)
..|++|+.+|+|. |-.+.+++||.|+||||||+++|++..++.+ ..|+.|+||+ --+|.++ +.|+.||-||++
T Consensus 148 ~gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~---gedk~VKCwDLe 223 (460)
T KOG0285|consen 148 SGHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA---GEDKQVKCWDLE 223 (460)
T ss_pred hhccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe---cCCCeeEEEech
Confidence 4589999999997 8889999999999999999999999999985 5899999995 5566554 677999999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
..+.++.+-||...|+.++.. |.-+.|++++.|.++|+||+++...+.+|.||...|.+|.|.|-.-.++|+| |+|||
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 999999999999999999998 6678999999999999999999999999999999999999999777788999 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
|||+. |+-..+|..|.-. |++++..|.-...||+|.| .||-|++..|+.++.|.||+
T Consensus 303 lWDl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~d------------nik~w~~p~g~f~~nlsgh~----- 360 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASPD------------NIKQWKLPEGEFLQNLSGHN----- 360 (460)
T ss_pred EeeeccCceeEeeecccce-----eeEEecCCchhhhhccCCc------------cceeccCCccchhhcccccc-----
Confidence 99997 9999999988765 8999999999999999886 79999999999999999998
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.-|.+++...|| .+++|++.|.+.+||
T Consensus 361 -----------------------------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 361 -----------------------------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred -----------------------------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 589999999998 588999999999998
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=293.99 Aligned_cols=270 Identities=15% Similarity=0.212 Sum_probs=227.9
Q ss_pred eeccEEEEEecCceEEEEecccceeeee-eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 89 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~t-l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~ 89 (389)
+-...+++++.++++++|+..+|+++.+ +.||. +.|++++|..-+..|++ |+.| .++++||+.+|++.
T Consensus 216 ~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~-g~V~~l~~~~~~~~lvs----gS~D------~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 216 LHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF-GGVWGLAFPSGGDKLVS----GSTD------KTERVWDCSTGECT 284 (537)
T ss_pred eecCeEEecCCCceeEEeecccceEEEeeccCCC-CCceeEEEecCCCEEEE----EecC------CcEEeEecCCCcEE
Confidence 3378899999999999999999999999 99974 99999999887889999 5678 99999999999982
Q ss_pred CcceeEeeecccCceeE-EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCee
Q 016446 90 SGFALFESESLKWPGFV-EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVP 166 (389)
Q Consensus 90 ~~~~l~~~~~~~~~~~v-~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~t 166 (389)
..+. +|...+ .++ -.+..+++||.|.|||+|++.+++++.++. ...|++|.+. +.++++++ .|++
T Consensus 285 --~~l~-----gh~stv~~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs---~d~~ 352 (537)
T KOG0274|consen 285 --HSLQ-----GHTSSVRCLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGS---YDGT 352 (537)
T ss_pred --EEec-----CCCceEEEEE-ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEe---cCce
Confidence 2232 343343 232 456789999999999999999999998886 4789999999 66776664 4579
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
|++||+.+++|+++|++|.+.|.++.+. + ..+++|+.|++||+||+.++ +|+.+|.+|..-|..+ ...++.|+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lv 427 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLV 427 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeE
Confidence 9999999999999999999999999775 4 88999999999999999999 9999999999988655 55788899
Q ss_pred EEc-CCeEEEEeCC-CcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 245 TFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|++ |++||+||.+ |+|++++++ |... |..+++. -..+++++. |++++|||+.+|+++++
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhh
Confidence 999 9999999996 999999999 4443 6788776 355555544 59999999999999998
Q ss_pred ecCCC
Q 016446 322 INATN 326 (389)
Q Consensus 322 l~gH~ 326 (389)
+-.++
T Consensus 490 l~~~~ 494 (537)
T KOG0274|consen 490 LLSTD 494 (537)
T ss_pred hhhcc
Confidence 85554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=289.93 Aligned_cols=233 Identities=16% Similarity=0.226 Sum_probs=212.4
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
-+.+|.|. |....+..+-..|+|.|||.++..++.+++ ..+|++.+|= --++++++ ++|+.||+++..|++.+
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G---sDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG---SDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe---cCCceEEEEecccceee
Confidence 35689997 888888888999999999999999999997 5689999999 57788776 56799999999999999
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd 255 (389)
++|+-|.+-+++++.+ |..-+++++|.|-+||+||.+.+ .|.++++||...|..|+|+| |...+||++ |+|||+|.
T Consensus 91 ~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 9999999999999998 56779999999999999999864 68999999999999999998 788999999 99999999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. ..+..||+||... |++|.|=|-| -||+||+.| .+|||||.+|.+|++||.||+
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaDD-----------~tiKvWDyQtk~CV~TLeGHt------ 227 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGADD-----------LTIKVWDYQTKSCVQTLEGHT------ 227 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCCC-----------ceEEEeecchHHHHHHhhccc------
Confidence 95 8899999999976 7999997744 699998765 899999999999999999999
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+-|..+.|+|.=.+++|||+|||||||.+
T Consensus 228 ----------------------------~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 228 ----------------------------NNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred ----------------------------ccceEEEecCCCcEEEEecCCccEEEecC
Confidence 58999999999999999999999999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=271.47 Aligned_cols=308 Identities=11% Similarity=0.077 Sum_probs=245.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
--.+|++++|++|.+++=--=+.-.++.-| ...|++|.|||||...|+++ .| +.+.|+|=.+|+.. .
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~H-skFV~~VRysPDG~~Fat~g----sD------gki~iyDGktge~v--g 226 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREH-SKFVNCVRYSPDGSRFATAG----SD------GKIYIYDGKTGEKV--G 226 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeeccccc-ccceeeEEECCCCCeEEEec----CC------ccEEEEcCCCccEE--E
Confidence 457999999999999973323555567766 48999999999999999964 44 78889988888752 1
Q ss_pred eeE-eeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEE----EEEEcCCceEEEEecCCCCee
Q 016446 93 ALF-ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQ----EIKISPGIMLLIFNRSSSHVP 166 (389)
Q Consensus 93 ~l~-~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~----~vafS~g~~la~~~~~s~d~t 166 (389)
.+- ...|.|.|+++++| ||++.++++|.|+++||||+.+.+++.++. +..|. .+-+ +++.|++-+.+ ++
T Consensus 227 ~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItVSl~---G~ 301 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITVSLS---GT 301 (603)
T ss_pred EecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEEEcC---cE
Confidence 111 12477889999998 999999999999999999999999999986 33222 2222 35556555333 79
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccC------------------
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTE------------------ 227 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh------------------ 227 (389)
|-+.+...+..++++.||...+.++..+ +++.+|.++++||.|.=||..+|.+-+.. ++|
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 9999999999999999999999999998 78899999999999999999887532111 111
Q ss_pred --------------------------------------------------------------CCceEEEEEcCCCcEEEE
Q 016446 228 --------------------------------------------------------------FMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 228 --------------------------------------------------------------~~~v~sv~fspdg~~laS 245 (389)
.-.+.++|++|+++.+|-
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 012567888999999999
Q ss_pred Ec-CCeEEEEeCCC-cEE--EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 246 FR-NRTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 246 ~s-D~tIklWd~~G-~~l--~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|. |+.|.|+.+.| ++. ..+..|..+ |..|+|||||+|||++-.. +.|-+||+++.+....
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da~-----------rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDAS-----------RKVVLYDVASREVKTN 524 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEeccC-----------CcEEEEEcccCceecc
Confidence 99 99999999985 432 345678877 7999999999999997543 7899999998887333
Q ss_pred ecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 322 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 322 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
--+ |+ ..|.+|++|||.+++||||-|-.|-+|..
T Consensus 525 ~w~FHt----------------------------------akI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 525 RWAFHT----------------------------------AKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeeeee----------------------------------eeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 333 55 69999999999999999999999999973
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=283.11 Aligned_cols=280 Identities=14% Similarity=0.160 Sum_probs=233.2
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La 117 (389)
++..+ ++.|.||-|.|--..++.+ -+. .++-||+..+..... -|. -.-..+++..|- +--+.++
T Consensus 8 k~~~r-SdRVKsVd~HPtePw~la~----Lyn------G~V~IWnyetqtmVk---sfe-V~~~PvRa~kfi-aRknWiv 71 (794)
T KOG0276|consen 8 KFQSR-SDRVKSVDFHPTEPWILAA----LYN------GDVQIWNYETQTMVK---SFE-VSEVPVRAAKFI-ARKNWIV 71 (794)
T ss_pred Hhhcc-CCceeeeecCCCCceEEEe----eec------CeeEEEecccceeee---eee-ecccchhhheee-eccceEE
Confidence 34444 6999999999998877663 355 677889877665421 222 111234667886 6677999
Q ss_pred EecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEE
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f 193 (389)
+||+|..||+++.+|++.+.+++ .+.|++|+.+| .-+++++ |+|++||+||.+. -.|.++|+||.|-|..|+|
T Consensus 72 ~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred EecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 99999999999999999998886 46899999998 4455553 6689999999875 4688999999999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC--CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp--dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
+|-|+.+++++|-|+|||+|.+.+-.|..||+||...|++|.|-| |..+|+||+ |.|||+||.+ ..|++||+||..
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 988999999999999999999999999999999999999999976 557999999 9999999998 889999999997
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
- |+.++|.|.=-+|+|||+ |||+|||+-.|=++..+|+
T Consensus 229 N-----vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn-------------------------- 266 (794)
T KOG0276|consen 229 N-----VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN-------------------------- 266 (794)
T ss_pred c-----ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh--------------------------
Confidence 5 899999999999999876 5999999977666554443
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..+++||+++-.+.+..++.|...|.|-+
T Consensus 267 --------~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 --------YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred --------cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 34479999999999999999998887643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=268.84 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=233.8
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCE---EEEEEEeecCCCcceeeeeeeEe
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~---l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.|..|-.+.+.|+++|+||++|+|++. |++..++.||. +.|.++++---++. +++ ++.| ++++||
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght-~~ik~v~~v~~n~~~~~fvs----as~D------qtl~Lw 174 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHT-GPIKSVAWVIKNSSSCLFVS----ASMD------QTLRLW 174 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCC-cceeeeEEEecCCccceEEE----ecCC------ceEEEE
Confidence 355666678999999999999999995 99999999985 89997776555444 777 4578 888888
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecC
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRS 161 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~ 161 (389)
-+..|+.......-..+|-..+.+|+-. ++|..++|||.|.++++|+.+ -++.-++..... .=...++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~-~~~~~~~E~~s~---~rrk~~~~------ 243 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVE-TDEEDELESSSN---RRRKKQKR------ 243 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccC-CCccccccccch---hhhhhhhh------
Confidence 8877765211111112455567788886 899999999999999999942 222222221100 00001110
Q ss_pred CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
++. ..++..+-+|.||+..|.+|.|.+ .+.+.++|.|+|||.||+++|.+..++.+. ....+|..+|..+
T Consensus 244 --~~~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 244 --EKE-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred --hhc-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 011 136788999999999999999963 788999999999999999999998887765 5899999999999
Q ss_pred EEEEEc-CCeEEEEeCC---Cc-EEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 242 LFLTFR-NRTVAVWNFR---GE-LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~---G~-~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+||+|+ |..|||||.+ |. ..++|.||++| |.+|-++|-. ..|+|||. |+++||||+++
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS 377 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRS 377 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEecc
Confidence 999998 9999999984 44 45799999999 7999999954 56677766 59999999999
Q ss_pred Ce-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+ .+.+|.+|. +.|.++.++ +|..|+||+.|++||+..
T Consensus 378 ~k~plydI~~h~----------------------------------DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 378 TKAPLYDIAGHN----------------------------------DKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCCcceeeccCC----------------------------------ceEEEEecc-CCceEEeccCcceEEEec
Confidence 88 899999998 589999997 577899999999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=247.72 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=211.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+..+++.+.|+++++||..++++++++.++ ..+++++|+|||+.|+.+ +..+ ..+++|++.+|+.. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg~~l~~~---~~~~------~~v~~~d~~~~~~~--~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG--QRPRGITLSKDGKLLYVC---ASDS------DTIQVIDLATGEVI--G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC--CCCCceEECCCCCEEEEE---ECCC------CeEEEEECCCCcEE--E
Confidence 357889999999999999999999999875 347899999999977443 3355 67889998888752 1
Q ss_pred eeEeeecccCceeEEEecCCCeEEE-EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~La-s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
.+. ....+..++|+ |+|+.|+ +++.|++|++||+.+++++..+. +..+.+++|+ +|.++++++.+ ...+..
T Consensus 68 -~~~--~~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~~ 141 (300)
T TIGR03866 68 -TLP--SGPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET--TNMAHF 141 (300)
T ss_pred -ecc--CCCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC--CCeEEE
Confidence 111 11224568998 8998664 55679999999999998888876 4568899999 57788776433 246788
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCC-------CceEEEEEcCCCc
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEF-------MTPSAFIFLYENQ 241 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~-------~~v~sv~fspdg~ 241 (389)
||..+++++..+... .....++|+ ++++.+++++ .|++|++||++++++++.+..+. .....++|+|||+
T Consensus 142 ~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 142 IDTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EeCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 999999988766532 445678887 6778776654 79999999999999877664332 1345689999999
Q ss_pred EEEEE-c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 242 LFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 242 ~laS~-s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++..+ . +++|.+||++ ++++..+..+ .. +.+++|+|||++|++++. .+++|++||+.++++
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcE
Confidence 85443 4 7899999997 8887766422 22 689999999999998753 358999999999999
Q ss_pred EEEecCC
Q 016446 319 LAKINAT 325 (389)
Q Consensus 319 l~tl~gH 325 (389)
+.+++..
T Consensus 284 ~~~~~~~ 290 (300)
T TIGR03866 284 IKSIKVG 290 (300)
T ss_pred EEEEEcc
Confidence 9999754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=289.11 Aligned_cols=272 Identities=16% Similarity=0.189 Sum_probs=234.9
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
+..|..++|.|--..|+++. -. ..|.+||.+.|.++.. | .+|-|.++.|+|. |.+.+.+||++|.
T Consensus 9 SsRvKglsFHP~rPwILtsl----Hs------G~IQlWDYRM~tli~r---F-deHdGpVRgv~FH-~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSL----HS------GVIQLWDYRMGTLIDR---F-DEHDGPVRGVDFH-PTQPLFVSGGDDY 73 (1202)
T ss_pred cccccceecCCCCCEEEEee----cC------ceeeeehhhhhhHHhh---h-hccCCccceeeec-CCCCeEEecCCcc
Confidence 46899999999998887743 22 6788999999987432 3 2677888999997 8999999999999
Q ss_pred eEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 124 IYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
+||||+.++-+|+++|.+ +.|+.+.|++ =-+++++ |+|+||||||.++++|+.+|+||.|-|...+|. |..+.
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptEDl 149 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTEDL 149 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccce
Confidence 999999999999999975 5899999994 5577664 678999999999999999999999999999998 67889
Q ss_pred EEEEeCCCcEEEEECCC--------C-------------------e--EEEEcccCCCceEEEEEcCCCcEEEEEc-CCe
Q 016446 201 LLVKQENENLQILDVRN--------A-------------------E--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 201 l~~~s~D~tIklWd~~t--------g-------------------~--~~~~l~gh~~~v~sv~fspdg~~laS~s-D~t 250 (389)
++++|-|.|||+||+.. | . ..++|+||.-.|+.+||.|.-.+|+||+ |+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 99999999999999853 1 0 2356899999999999999999999999 999
Q ss_pred EEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 251 VAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 251 IklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
||+|..+ -+ .+-|..||.+. |.++-|.|....|+|.|+ |++||+||+...+++++++--.
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren- 292 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN- 292 (1202)
T ss_pred eeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC-
Confidence 9999996 33 57789999987 799999999999999765 5999999999999999997544
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
++-|.||-+|..+.+|.|=..|.+
T Consensus 293 ---------------------------------dRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 ---------------------------------DRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ---------------------------------CeEEEEEecCCcceeeeecCCceE
Confidence 488899999999988877665654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=262.64 Aligned_cols=239 Identities=12% Similarity=0.199 Sum_probs=202.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
+.+-|....|+ |||..+|||+.|..|-||++. ..+...++ |.+.|.+|.|. ++..|+++ +.|++++.||++|
T Consensus 46 h~geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~---gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 46 HKGEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC---GTDKTVRGWDAET 121 (338)
T ss_pred CcceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe---cCCceEEEEeccc
Confidence 44445668998 899999999999999999973 23333444 56799999999 89999875 6679999999999
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 253 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIkl 253 (389)
|++.+.+++|..-++++.-.......+.+++.|+|+||||+++.+++++++.- -++.+|.|..++..+.||. |+.||+
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-yqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-YQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-eeEEEEEecccccceeeccccCceee
Confidence 99999999999999988844222244445789999999999999999997543 4799999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC----CeEEEEecCCCCC
Q 016446 254 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----GKCLAKINATNCS 328 (389)
Q Consensus 254 Wd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t----g~~l~tl~gH~~~ 328 (389)
||+. ++++.+|+||.+. |..++.||+|.+|.|-++| .++|+||+.. .+|+..++||...
T Consensus 201 Wd~r~~d~~~~lsGh~Dt-----It~lsls~~gs~llsnsMd-----------~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADT-----ITGLSLSRYGSFLLSNSMD-----------NTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred eccccCcceEEeecccCc-----eeeEEeccCCCcccccccc-----------ceEEEEEecccCCCCceEEEeecchhh
Confidence 9996 9999999999987 7999999999999999886 7999999873 6689999999842
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+| .-...+++||++..+..||.|+.|.+||
T Consensus 265 -fe-----------------------------knlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 265 -FE-----------------------------KNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred -hh-----------------------------hhcceeeccCCCCccccccccceEEEee
Confidence 11 2344689999999999999999999998
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=276.50 Aligned_cols=319 Identities=20% Similarity=0.215 Sum_probs=245.5
Q ss_pred ccccEEEEEeeccE--EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCC---C------
Q 016446 2 KRTKVIEIVAARDI--VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN---F------ 70 (389)
Q Consensus 2 ~~~~v~~i~~~~~~--~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d---~------ 70 (389)
+|..|..+..+.++ ||++..||.||||+..++..+.++|||. ..|..+-|...|..|||+|.|+..= +
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK-~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl 142 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHK-AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL 142 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccc-cceEEEEEcccCceEeecCCCccEEEEEeccceee
Confidence 34567777776444 4999999999999999999999999985 9999999999999999955432110 0
Q ss_pred -----------------------cceeeeeeeEeEeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 71 -----------------------SSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 71 -----------------------~~l~~~~~~l~~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
++=|-..+++||+.+..+ |. -.+.+-+++++++ + +.+++++.|+.+
T Consensus 143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC------f~Thvd~r~Eiw~l~~~-~--~~lvt~~~dse~ 213 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC------FETHVDHRGEIWALVLD-E--KLLVTAGTDSEL 213 (888)
T ss_pred EEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee------eeEEecccceEEEEEEe-c--ceEEEEecCCce
Confidence 222223344444444433 11 1244446667776 3 677778888888
Q ss_pred EEEeCC-----------------------------------CCe------------------------------------
Q 016446 126 KVFDLK-----------------------------------NYT------------------------------------ 134 (389)
Q Consensus 126 klWdl~-----------------------------------~g~------------------------------------ 134 (389)
++|++. +.+
T Consensus 214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkk 293 (888)
T KOG0306|consen 214 KVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKK 293 (888)
T ss_pred EEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhh
Confidence 888870 000
Q ss_pred -----------------------------------------------------EEEEe--------------------cC
Q 016446 135 -----------------------------------------------------MLYSI--------------------SD 141 (389)
Q Consensus 135 -----------------------------------------------------~l~tl--------------------~~ 141 (389)
|.+.+ |.
T Consensus 294 a~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR 373 (888)
T KOG0306|consen 294 AETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHR 373 (888)
T ss_pred ccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccch
Confidence 00000 12
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
..|+++.|| +...+++++. ..||+|+..|++|++|++. +-+....|. |.+.+++.|...|.+.|+|+.+..+
T Consensus 374 ~dVRsl~vS~d~~~~~Sga~----~SikiWn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGAG----ESIKIWNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred hheeEEEeecCceeeeecCC----CcEEEEEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEeehhhh
Confidence 368899999 5555555432 4799999999999999984 567888887 6677888899999999999999999
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC------CcEE--------EEeccCcCCcCCCCeeEEEECCCC
Q 016446 221 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------GELV--------TSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~------G~~l--------~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
+++.+.|.+.+|+++.+||++.+++++ |.|||+||+. |... ++|+=-. .|.+|.+||||
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d------dvL~v~~Spdg 520 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED------DVLCVSVSPDG 520 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc------cEEEEEEcCCC
Confidence 999999999999999999999999999 9999999952 3221 2333111 28999999999
Q ss_pred CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEE
Q 016446 286 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 365 (389)
Q Consensus 286 ~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~s 365 (389)
++||.+=-| .|+|++-+.|=+.--+|.||. -||.|
T Consensus 521 k~LaVsLLd-----------nTVkVyflDtlKFflsLYGHk----------------------------------LPV~s 555 (888)
T KOG0306|consen 521 KLLAVSLLD-----------NTVKVYFLDTLKFFLSLYGHK----------------------------------LPVLS 555 (888)
T ss_pred cEEEEEecc-----------CeEEEEEecceeeeeeecccc----------------------------------cceeE
Confidence 999998664 899999999999999999998 49999
Q ss_pred EEECCCCCEEEEecCCCcEEEcc
Q 016446 366 LFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 366 vafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+..|||++.|+|||.|++||+|-
T Consensus 556 mDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred EeccCCcCeEEeccCCCceEEec
Confidence 99999999999999999999995
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=269.73 Aligned_cols=292 Identities=16% Similarity=0.220 Sum_probs=244.5
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeEeeecccCceeEEE
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFESESLKWPGFVEF 108 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~~~~~~~~~~~v~F 108 (389)
++.+++.++...-+.|-.|||||++|++ |+.| .-|.+|+..+||+- +.+.-|- -+-..+..+.|
T Consensus 203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvs----gSvD------GFiEVWny~~GKlrKDLkYQAqd~fM-Mmd~aVlci~F 271 (508)
T KOG0275|consen 203 QLARSIKFGQKSHVECARFSPDGQYLVS----GSVD------GFIEVWNYTTGKLRKDLKYQAQDNFM-MMDDAVLCISF 271 (508)
T ss_pred HhhhheecccccchhheeeCCCCceEee----cccc------ceeeeehhccchhhhhhhhhhhccee-ecccceEEEee
Confidence 3455677777778899999999999999 5566 78889999999982 1111221 01223567999
Q ss_pred ecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 109 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 109 s~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
| .|..+||+|++||.||+|.+.+|+|++.+. ...|.++.|| |+..++++ +.|.|+|+--+..|+||+.|.||
T Consensus 272 S-RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 272 S-RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred c-ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCc
Confidence 8 899999999999999999999999998885 4689999999 88887764 67799999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCCCcE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGEL 260 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~G~~ 260 (389)
..-++++.|. ++|..++++|.|+|||+|+.++++|+.+++ +..-+|.+|...|. -..++.+. .+||-|-+++|+.
T Consensus 348 sSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 348 SSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred cccccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999998 789999999999999999999999999985 34568899887764 34566666 9999999999999
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+++|..-.- ..+.--+.+.||-|.++-+.++ |+.+.-+.+.+|++-++|.-|+
T Consensus 427 VrsfsSGkR--EgGdFi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~VhE-------------- 479 (508)
T KOG0275|consen 427 VRSFSSGKR--EGGDFINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVHE-------------- 479 (508)
T ss_pred EeeeccCCc--cCCceEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeeccc--------------
Confidence 999973211 1112356778999999988755 5999999999999999999998
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|-.++-+|-.+.|||=++||++|||.
T Consensus 480 --------------------kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 --------------------KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --------------------ccccccccCcccchhhhhcccchhhhcC
Confidence 5788999999999999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=278.82 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=244.6
Q ss_pred eeeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecC
Q 016446 34 RRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
+.+.++.||. ..|.++-|.| -|..|+| ++-| ..|+||++.. |++..+ | ..|...|.+++|+ +
T Consensus 205 k~~~~~~gH~-kgvsai~~fp~~~hLlLS----~gmD------~~vklW~vy~~~~~lrt---f-~gH~k~Vrd~~~s-~ 268 (503)
T KOG0282|consen 205 KLSHNLSGHT-KGVSAIQWFPKKGHLLLS----GGMD------GLVKLWNVYDDRRCLRT---F-KGHRKPVRDASFN-N 268 (503)
T ss_pred hheeeccCCc-cccchhhhccceeeEEEe----cCCC------ceEEEEEEecCcceehh---h-hcchhhhhhhhcc-c
Confidence 5677899986 8999999999 7999988 6788 8999999955 766222 1 2344457789998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC-C-ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~-g-~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
+|+.+.|+|.|+++||||+++|+|+..++ +..+.+|.|.| + ..++++ ..|+.|+.||+++|+.+++...|.+.+
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999999999999999999999998 56789999994 4 566565 455899999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC----cEEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG----ELVT 262 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G----~~l~ 262 (389)
..+.|. +++.+++++++|++++||+.+.+-.++.. ..+.....+++.+|++..++.=+ |+.|-+..+.- ...+
T Consensus 346 ~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999998 78999999999999999999988876653 34445678899999999999889 99999988642 3457
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
.++||... ++-..|.|||||.+|+||+. ||.+.+||.+|-+++.+|++|+
T Consensus 425 ~feGh~va---Gys~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 425 RFEGHSVA---GYSCQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred hhcceecc---CceeeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCC----------------
Confidence 89999864 33478999999999999865 5999999999999999999997
Q ss_pred ccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEcc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~ 388 (389)
+.+..+.|+|-- ..+||++.||.||+|+
T Consensus 475 ------------------~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 ------------------QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------------cceEEEEecCCCcceeEecccCceeEecC
Confidence 699999999976 5799999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=275.96 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=194.4
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE---------------EecCCcEEEEEEcC--CceEEEEecCCCCeeE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SISDKHVQEIKISP--GIMLLIFNRSSSHVPL 167 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~---------------tl~~~~V~~vafS~--g~~la~~~~~s~d~ti 167 (389)
..+++ +|+..+++++.+..+..|+...|..+. ..|...|.+|+|+| +++||++ +.|++|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg---S~DgtI 100 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA---SEDGTI 100 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE---eCCCEE
Confidence 45666 788888888889888899875554332 22346899999996 6688776 456899
Q ss_pred EEEEcCCC-------eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 168 KILSIEDG-------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 168 klWd~~tG-------~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
+|||+.++ +++.+|.+|...|..|+|++..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 99999876 46789999999999999984334688889999999999999999999999999999999999999
Q ss_pred cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-
Q 016446 241 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK- 317 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~- 317 (389)
++|++++ |++|+|||++ |+++.++.+|.... +..+.|.|++.+|++++.+ .+.|++|+|||+.+.+
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCC
Confidence 9999999 9999999996 99999999998652 4578899999999887643 3568999999998654
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEccC
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~~ 389 (389)
++.++..|.. ..+....|+||+++|++|+ .|++||+||.
T Consensus 250 p~~~~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 250 PYSTVDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ceeEeccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 4554444431 3677789999999999988 4999999983
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=267.72 Aligned_cols=288 Identities=11% Similarity=0.178 Sum_probs=232.1
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe-ccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i-~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
+.-+.|..| .+.||=+-|||+|++|||+| .| .++-+|.+ ..+++ ...++ -.+...+.++.|| |
T Consensus 215 qt~qil~~h-tdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~---kl~~tlvgh~~~V~yi~wS-P 279 (519)
T KOG0293|consen 215 QTWQILQDH-TDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHF---KLKKTLVGHSQPVSYIMWS-P 279 (519)
T ss_pred hhhhhHhhC-CCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCcce---eeeeeeecccCceEEEEEC-C
Confidence 444567766 59999999999999999954 55 67778887 44442 11233 1233335668998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LH 186 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~ 186 (389)
|.++|++|+.|..+++||+.+|.+.+.++ +..|.++++. ||..++++ +.|++|--||+ +|..+..-++- ..
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~G---s~dr~i~~wdl-Dgn~~~~W~gvr~~ 355 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTG---SPDRTIIMWDL-DGNILGNWEGVRDP 355 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEec---CCCCcEEEecC-Ccchhhcccccccc
Confidence 99999999999999999999999987775 3689999999 68888776 55689999996 67877766532 24
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
.+..++.. +||.++++...|..|++++.++..++.....| ..+.++..|.||++++.-= ++.|++||++ ..+++.+
T Consensus 356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred eeEEEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 57888886 88999999999999999999998887655544 5899999999999998885 9999999997 8899999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
.||...+ ..|.+..=-.|.+++||||+| +.|+||+-.+|+++.+|.||.
T Consensus 434 ~Ghkq~~--fiIrSCFgg~~~~fiaSGSED-----------~kvyIWhr~sgkll~~LsGHs------------------ 482 (519)
T KOG0293|consen 434 FGHKQGH--FIIRSCFGGGNDKFIASGSED-----------SKVYIWHRISGKLLAVLSGHS------------------ 482 (519)
T ss_pred hcccccc--eEEEeccCCCCcceEEecCCC-----------ceEEEEEccCCceeEeecCCc------------------
Confidence 9998653 123333333467899998765 899999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+++|.. .++||||.|||||||.+
T Consensus 483 ----------------~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 483 ----------------KTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ----------------ceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 589999999966 68999999999999964
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=287.47 Aligned_cols=233 Identities=15% Similarity=0.213 Sum_probs=205.8
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
+..++|. |.-..+.++-..|.|+|||..=|.|+..| |.+.|+.|+|+|.|=|.++ +++|.+||+|+..+.+|+.|
T Consensus 12 vKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 12 VKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred ccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe--cCCccEEEEEecccceehhh
Confidence 3569997 88889999999999999999888888777 4679999999975544443 57789999999999999999
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
|.||.+-|+.+.|+ +.---|+++|.|.||||||.++++|+.+++||+..|.+..|.|.-.+++|+| |+|||+||+.|=
T Consensus 89 L~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hccccceeEEeecc-CCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999998 4446899999999999999999999999999999999999999999999999 999999995431
Q ss_pred ----------------------E--------EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 260 ----------------------L--------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 260 ----------------------~--------l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
+ ...|+||.-. |+-+||.|.--.|+||+.| ..||
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~DD-----------RqVK 231 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGADD-----------RQVK 231 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCCc-----------ceee
Confidence 1 2578899765 7999999999999998765 8999
Q ss_pred EEeCCCCe--EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 310 VSSILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 310 lWd~~tg~--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
||-...-+ .+-+.+||. +.|.+|-|+|.-..|.|.|+|++||+|
T Consensus 232 lWrmnetKaWEvDtcrgH~----------------------------------nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHY----------------------------------NNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred EEEeccccceeehhhhccc----------------------------------CCcceEEecCccceeEecCCCccEEEE
Confidence 99976555 467889998 589999999999999999999999999
Q ss_pred cC
Q 016446 388 SN 389 (389)
Q Consensus 388 ~~ 389 (389)
|.
T Consensus 278 Dm 279 (1202)
T KOG0292|consen 278 DM 279 (1202)
T ss_pred ec
Confidence 84
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=250.09 Aligned_cols=234 Identities=15% Similarity=0.216 Sum_probs=206.0
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
..+.+..|.|. .||+|..+++.|+|||||+...|.|+++.. +++|.+++.+ |+..+|++ +.|+-+.+||++||
T Consensus 16 ~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 16 AQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQVWDVNTG 91 (307)
T ss_pred cccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEEEEcccC
Confidence 44566789996 999999999999999999999999998875 6799999999 99999864 67899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
+.++.|.+|.+.++.|+|++ +...+++||.|.++|+||.++. +++|+|..-.+.|.+|..+ +..+++|| |||+|
T Consensus 92 kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 99999999999999999984 4677888999999999999864 6899999999999999775 56788999 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
.+|++ |++....-||. |+++.|||||+....+|.| ++|||-|-.||++++..+||.+-
T Consensus 169 tydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l~-----------stlrLlDk~tGklL~sYkGhkn~--- 227 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSLD-----------STLRLLDKETGKLLKSYKGHKNM--- 227 (307)
T ss_pred EEEeecceeehhhcCCc-------ceeEEecCCCCEEEEeecc-----------ceeeecccchhHHHHHhcccccc---
Confidence 99998 99877776764 8999999999999998876 89999999999999999999831
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+-=..+.|+.--..++|||+||.|-+||.
T Consensus 228 -----------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 -----------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred -----------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12234677777888999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=251.78 Aligned_cols=312 Identities=9% Similarity=0.068 Sum_probs=256.3
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
|..|-.. +..+|++..|-...||++.+|..+..+.+|. +.|.++.||.||.+||+ |.-+ ..++||.+
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK-DSVt~~~FshdgtlLAT----Gdms------G~v~v~~~ 135 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK-DSVTCCSFSHDGTLLAT----GDMS------GKVLVFKV 135 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC-CceEEEEEccCceEEEe----cCCC------ccEEEEEc
Confidence 4444444 7889999999999999999999999999985 99999999999999999 6677 78889999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEec
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~ 160 (389)
.+|.. ..++++ ...-+.-+.+. |-+.+|+.|+.||.+-.|.+.++...+.+ |+..+.+=.|. ||++++++.
T Consensus 136 stg~~--~~~~~~--e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy- 209 (399)
T KOG0296|consen 136 STGGE--QWKLDQ--EVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY- 209 (399)
T ss_pred ccCce--EEEeec--ccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-
Confidence 99875 233331 22233448887 89999999999999999999885544555 45689999999 699998874
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--------cCCCce
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--------TEFMTP 231 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--------gh~~~v 231 (389)
.|+||++||..||+.+.++.... .....+.++ ..+..++.++.|+.+++=+..+|+.+..++ .|...+
T Consensus 210 --~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 210 --DDGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred --cCceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 36899999999999999987322 234666776 457788888999999999999999888777 466655
Q ss_pred EEEEE---cCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIF---LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~f---spdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.+|.| +..=.+.|.|+ ||+|-|||+.-.-++..-.|... |..+-|-+ -.+|+++|.+ |+
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~~-----------g~ 349 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACAN-----------GK 349 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeeccC-----------ce
Confidence 55555 55777899999 99999999984444444457766 78999988 7888888875 99
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
||+||.+||+|+.++.||+ ..|...+++||++.++|+|.|++.|+.
T Consensus 350 v~~wDaRtG~l~~~y~GH~----------------------------------~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 350 VRQWDARTGQLKFTYTGHQ----------------------------------MGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEeeeccccceEEEEecCc----------------------------------hheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 9999999999999999999 699999999999999999999999987
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
+
T Consensus 396 ~ 396 (399)
T KOG0296|consen 396 E 396 (399)
T ss_pred e
Confidence 5
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=246.13 Aligned_cols=228 Identities=14% Similarity=0.221 Sum_probs=194.0
Q ss_pred cccCceeEEEecCC-CeEEEEecCCCeEEEEeCCC---CeEEEEe---cCCcEEEEEEcC-CceEEEEecCCCCeeEEEE
Q 016446 99 SLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKN---YTMLYSI---SDKHVQEIKISP-GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 99 ~~~~~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~---g~~l~tl---~~~~V~~vafS~-g~~la~~~~~s~d~tiklW 170 (389)
+.+-+++|||+ |- |.+|||+|.|++||+|++.. -.|...+ |...|++||+|| |++||++ |.|.|+-||
T Consensus 13 h~~r~W~~awh-p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---SFD~t~~Iw 88 (312)
T KOG0645|consen 13 HKDRVWSVAWH-PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---SFDATVVIW 88 (312)
T ss_pred CCCcEEEEEec-cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe---eccceEEEe
Confidence 33445689998 66 88999999999999999874 3466666 346899999996 9999876 566899999
Q ss_pred EcCCC--eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 171 SIEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 171 d~~tG--~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
.=..| +|+.+|+||...|++|+|+ .+|.+||+.+.|+.|-||.+..+ +|..+|++|..-|.-|+|.|.-.+|+|
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 85433 7999999999999999999 67999999999999999999854 488899999999999999999999999
Q ss_pred Ec-CCeEEEEeCC-C---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 246 FR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 246 ~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
+| |+|||+|+.. + +|+++|.+|..- |++++|.|.|..|+|++. |+||+||-.. .
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~-----~ 226 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLY-----T 226 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeec-----c
Confidence 99 9999999874 3 699999999874 899999999999999876 4999999743 2
Q ss_pred EecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 321 KINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 321 tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+.+ |. ..++.|++. + -.||||+.|+.|+|..
T Consensus 227 ~~~~~~s----------------------------------r~~Y~v~W~-~-~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 227 DLSGMHS----------------------------------RALYDVPWD-N-GVIASGGGDDAIRLFK 259 (312)
T ss_pred Ccchhcc----------------------------------cceEeeeec-c-cceEeccCCCEEEEEE
Confidence 3333 32 589999999 4 4799999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=268.38 Aligned_cols=273 Identities=13% Similarity=0.110 Sum_probs=219.6
Q ss_pred ccEEEEEee------ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~------~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
+||++.|+. |..|++++.+|...||+. +.=...++...|+..|+++-+|++|..+|| |..+ ..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~g------G~ 161 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMIS----GDKG------GM 161 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEE----cCCC------ce
Confidence 466666665 889999999999999997 344444555567799999999999999999 4455 56
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEcCCc-e
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISPGI-M 154 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS~g~-~ 154 (389)
||+|+.....+ +.++..+-..|+.+||| |+....+++|.|++|||||..-+++-.. .|+-.|.+|+++|.+ .
T Consensus 162 iKyWqpnmnnV----k~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 162 IKYWQPNMNNV----KIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred EEecccchhhh----HHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 66666544332 12221222457789999 6777889999999999999877775444 456689999999844 5
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
+|++ +.|.+|||||.++|+||.+|-+|.+.|..|.|+ +.+..|+++|.|+.+|++|+++-+-++++++|.+.|+++
T Consensus 237 iasg---skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 237 IASG---SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred eEEc---cCCceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 5443 556799999999999999999999999999998 677899999999999999999888899999999999999
Q ss_pred EEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 235 IFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 235 ~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
+++| .-.+|++++ ||.|..|.+. -+.+-.++ +|... ||++++.|=|.+||+||. |.++|.
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rf 376 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRF 376 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceee
Confidence 9999 455677777 9999999997 44444443 55543 899999999999999865 589999
Q ss_pred Ee
Q 016446 311 SS 312 (389)
Q Consensus 311 Wd 312 (389)
|.
T Consensus 377 w~ 378 (464)
T KOG0284|consen 377 WT 378 (464)
T ss_pred ec
Confidence 96
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=253.01 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=231.4
Q ss_pred eeecCCcceEEEEEEee---CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 38 FLNVSPDEVIRSLFYNK---NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 38 tl~~~~~~~v~sv~~sp---dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
+-.|| ..+|-.++||| +|=.|||++.|+.-= |+.=.+|+.+. -|. .+.+.+++.... .|..
T Consensus 9 ~c~gh-trpvvdl~~s~itp~g~flisa~kd~~pm----------lr~g~tgdwig---tfe-ghkgavw~~~l~-~na~ 72 (334)
T KOG0278|consen 9 TCHGH-TRPVVDLAFSPITPDGYFLISASKDGKPM----------LRNGDTGDWIG---TFE-GHKGAVWSATLN-KNAT 72 (334)
T ss_pred EEcCC-CcceeEEeccCCCCCceEEEEeccCCCch----------hccCCCCCcEE---eee-ccCcceeeeecC-chhh
Confidence 33555 58999999985 789999987654321 22224555522 122 466777787776 7888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v 191 (389)
.-||++.|=|.||||.-+|..+++|. .+-|.+|||+ |...|+++ +.++-+|++|++.-+ ..+.+.+|.+.++.|
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltg---g~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTG---GQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhcc---chHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 88999999999999999999999997 5789999999 88888875 566899999987533 567888999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCC
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
.|. ..+..|+++.+|+||||||.+||..+++|.-. ..|.++-.++||++|..+.-++|+.||.. =++|+..+ .|
T Consensus 150 ~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k---~P 224 (334)
T KOG0278|consen 150 LWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK---MP 224 (334)
T ss_pred EEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeecc---Cc
Confidence 997 56788999999999999999999999998743 47999999999999988888899999996 66776664 23
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
|.|.+...+|+-.+++.|++ |..++-+|..||+.+... +||-
T Consensus 225 ---~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~TgeEi~~~nkgh~----------------------- 267 (334)
T KOG0278|consen 225 ---CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNTGEEIGSYNKGHF----------------------- 267 (334)
T ss_pred ---cccccccccCCCceEEecCc-----------ceEEEEEeccCCceeeecccCCC-----------------------
Confidence 56899999999999998754 699999999999999885 8887
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|.+|.|||||...||||+|||||||+
T Consensus 268 -----------gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 268 -----------GPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred -----------CceEEEEECCCCceeeccCCCceEEEEE
Confidence 5999999999999999999999999997
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-30 Score=266.35 Aligned_cols=261 Identities=12% Similarity=0.102 Sum_probs=198.7
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE----------eccCCCCCcceeEeeecccC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY----------IRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~----------i~~g~~~~~~~l~~~~~~~~ 102 (389)
|+..+.=.-+ +-|+...+++|+..++++ +.+ ..+..|+ -..|+......++. .|.+.
T Consensus 11 g~~~k~~~~~--~~i~~~~~~~d~~~~~~~----n~~------~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~ 77 (493)
T PTZ00421 11 GVPARPDRHF--LNVTPSTALWDCSNTIAC----NDR------FIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGP 77 (493)
T ss_pred cccCCcccce--eccccccccCCCCCcEeE----CCc------eEEEEEecCCceEEeeccccccCCCCCceEe-CCCCC
Confidence 5544432222 456777788887777773 355 3333343 23454422222332 46667
Q ss_pred ceeEEEecC-CCeEEEEecCCCeEEEEeCCCC-------eEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 103 PGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNY-------TMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 103 ~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g-------~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
+.+|+|+ | |+++||+||.|++|||||+.++ +++.++. ...|.+|+|+| +.+||++ +.|++|+||
T Consensus 78 V~~v~fs-P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIW 153 (493)
T PTZ00421 78 IIDVAFN-PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVW 153 (493)
T ss_pred EEEEEEc-CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEE
Confidence 8899998 6 8999999999999999999765 2455664 46899999996 3578776 456899999
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCc-eEEEEEcCCCcEEEEE---
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTF--- 246 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~-v~sv~fspdg~~laS~--- 246 (389)
|+++|+++.++.+|...+.+++|+ |++..|++++.|++|||||+++++++.++.+|... +..+.|.|++.+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s 232 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence 999999999999999999999998 78889999999999999999999999999999865 4467899988777764
Q ss_pred -c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 -R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 -s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ |++|+|||++ .+.+.+...|... .+....|+||+++|++++.. |++||+||+.+++++..+
T Consensus 233 ~s~Dr~VklWDlr~~~~p~~~~~~d~~~----~~~~~~~d~d~~~L~lggkg----------Dg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 233 KSQQRQIMLWDTRKMASPYSTVDLDQSS----ALFIPFFDEDTNLLYIGSKG----------EGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCCCCeEEEEeCCCCCCceeEeccCCCC----ceEEEEEcCCCCEEEEEEeC----------CCeEEEEEeeCCceEEEe
Confidence 3 7999999995 4566666544432 25678899999999998742 599999999999988776
Q ss_pred cCC
Q 016446 323 NAT 325 (389)
Q Consensus 323 ~gH 325 (389)
...
T Consensus 299 ~~~ 301 (493)
T PTZ00421 299 SYS 301 (493)
T ss_pred ecc
Confidence 553
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=269.82 Aligned_cols=287 Identities=12% Similarity=0.148 Sum_probs=236.4
Q ss_pred ccccEEEEEeeccEEEEEe-cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 2 KRTKVIEIVAARDIVFALA-HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 2 ~~~~v~~i~~~~~~~a~~~-~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
-|+.|+.+-++.+-++.+| -.+.+++|++.|++|++|+.- +.+-+..|-|-+.++++ |... ..+-+
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~----G~k~------Gel~v 438 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVL----GTKN------GELQV 438 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEE----eccC------CceEE
Confidence 3889999999944444443 378999999999999999984 58899999999999988 5555 56667
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEe
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~ 159 (389)
.|+....+..+.+ .|-+.+++++-+ ||++..++||.|+|||+||.+ +.++ ||.+-
T Consensus 439 fdlaS~~l~Eti~----AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~---------------l~~~~~gt~~---- 494 (888)
T KOG0306|consen 439 FDLASASLVETIR----AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFK---------------LVVSVPGTQK---- 494 (888)
T ss_pred EEeehhhhhhhhh----ccccceeeeeec-CCCCceEEecCCcEEEEEeEE---------------EEeccCcccc----
Confidence 8887777643333 255677899998 999999999999999999961 2223 33210
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd 239 (389)
+-++| . .-++|+ ....+.+|.++ ||+.+|+++=-|.|+|++-+.+-+..-.|-||.-+|.++..|||
T Consensus 495 -----k~lsl---~---~~rtLe-l~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 495 -----KVLSL---K---HTRTLE-LEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred -----eeeee---c---cceEEe-ccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence 11111 1 112232 22678888888 67777777779999999999999998899999999999999999
Q ss_pred CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 240 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 240 g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
+++++|+| |++||+|-++ |+|-+.|-+|++. |++|.|-|+-+...+++.| +.||=||-..=+
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gKD-----------~kvKqWDg~kFe 625 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGKD-----------GKVKQWDGEKFE 625 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecCc-----------ceEEeechhhhh
Confidence 99999999 9999999999 9999999999987 8999999999999998775 899999987788
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++++|.||. ..||++|-+|+|.+++|+|.|.+||+|.
T Consensus 626 ~iq~L~~H~----------------------------------~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 626 EIQKLDGHH----------------------------------SEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hheeeccch----------------------------------heeeeeEEcCCCCeEEeccCCceeEeee
Confidence 999999998 5899999999999999999999999995
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=248.33 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=227.3
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
|+||. -++.-|-||.+|+.|.|++ .| ..+.+|+-..|+.+.+ . ..|.+.++++..+ -+-+.|++
T Consensus 6 l~GHE-RplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGt--y--~GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQGHE-RPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGT--Y--DGHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred cccCc-cccceEEecCCCcEEEEec----CC------CCceEEEecCCceeee--e--cCCCceEEEEEec-CCcceeee
Confidence 67764 8999999999999999964 56 7888999878875221 1 4577788889887 78899999
Q ss_pred ecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC--CCCeeEEEEEcC-------CCeEEEEEeecCCc
Q 016446 119 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS--SSHVPLKILSIE-------DGTVLKVFYHLLHR 187 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~--s~d~tiklWd~~-------tG~~l~tl~~~~~~ 187 (389)
||.|.++||||+++|+++.+++ ...|+.|.|+ +|.+++.+... +.-+.|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 6789999999 45555444322 223478899988 45567777766666
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
+..+-+. |-++.|++|.+||.|.+||+++| +.++.-+.|...|+.+.|+||..+++++| |.|.||||+. -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 7777776 67999999999999999999998 55667788999999999999999999999 9999999997 8999999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecC-CCcccccCCCCC--eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCC
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKA-EPEDQWMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D-~~~~~~~~s~D~--tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
.--. | |+++||+|--..++-|+.. +.+..-+..+.| -.|.+++-..+.+..++||=
T Consensus 229 ~te~-P-----vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--------------- 287 (327)
T KOG0643|consen 229 TTER-P-----VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--------------- 287 (327)
T ss_pred eecc-c-----ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc---------------
Confidence 8543 3 8999999988877776532 100001111111 12333333344455555554
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+|++|||+|||+..+||++||.|||-
T Consensus 288 -------------------GPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 288 -------------------GPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -------------------cCcceeEECCCCcccccCCCCceEEEE
Confidence 699999999999999999999999983
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=263.60 Aligned_cols=286 Identities=15% Similarity=0.226 Sum_probs=234.1
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
..+..| ...|+.|-|-|+..+|++ |+.| +.|++|++.-+++.....|- +..+.+.+++|+ ++++.+
T Consensus 169 ~~ld~h-~gev~~v~~l~~sdtlat----gg~D------r~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~ 234 (459)
T KOG0288|consen 169 FVLDAH-EGEVHDVEFLRNSDTLAT----GGSD------RIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHV 234 (459)
T ss_pred hhhhcc-ccccceeEEccCcchhhh----cchh------hhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceE
Confidence 345555 478999999999999999 7788 99999999877753333343 355667889998 788998
Q ss_pred EEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f 193 (389)
.+++.|+++++|++.+++++.+|. .+.|.++.|.- ...+++ ++.|+|||+||++.+.|.++.- ....++.|..
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs---gs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS---GSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee---ccccchhhhhhhhhhheecccc-ccccccceEe
Confidence 889999999999999999887775 56899999994 333443 4778999999999999999875 2355667766
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 271 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~ 271 (389)
. +..++++-.|++||.||.+++.++...+.|. .|.++..+++|.-|.|++ |.++++-|+. -+...++..-...
T Consensus 311 ~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k- 385 (459)
T KOG0288|consen 311 S---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK- 385 (459)
T ss_pred c---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-
Confidence 4 3455666799999999999999999988887 999999999999999999 9999999998 4566666643221
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
..+.++.+.|||||.|+|.||.| |.|+||++.+|+|...|...+.+
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~~l~~s~s~----------------------- 431 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEKVLSLSTSN----------------------- 431 (459)
T ss_pred cccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEEEeccCCCC-----------------------
Confidence 11225789999999999998765 99999999999999999876521
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++++|+|-|..|++++.++.+.||.
T Consensus 432 ---------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 ---------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 2799999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-29 Score=251.10 Aligned_cols=236 Identities=13% Similarity=0.184 Sum_probs=185.0
Q ss_pred eccEEEEEecCceEEEEeccc-ceeee-eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCC
Q 016446 12 ARDIVFALAHSGVCAAFSRET-NRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGK 87 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~t-g~~l~-tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~ 87 (389)
+|.++|++..+|.||+|+..+ ...|+ +++.- +.+|..|.|++|++.|+.+.. |..+| ..+.+||- ..|+
T Consensus 70 sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGE-Grerf-----g~~F~~DSG~SvGe 142 (603)
T KOG0318|consen 70 SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGE-GRERF-----GHVFLWDSGNSVGE 142 (603)
T ss_pred CceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEec-Cccce-----eEEEEecCCCccce
Confidence 399999999999999999743 34444 45554 579999999999999887543 44444 34444543 1121
Q ss_pred C-------------------------CCcceeE-------e---eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 88 P-------------------------DSGFALF-------E---SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 88 ~-------------------------~~~~~l~-------~---~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
+ ++....| . .+|...+.+|.|| |||...||++.||+|.++|=++
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCC
Confidence 1 1111122 1 2255556789998 9999999999999999999999
Q ss_pred CeEEEEec-----CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEEecCCCeEEEE
Q 016446 133 YTMLYSIS-----DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVK 204 (389)
Q Consensus 133 g~~l~tl~-----~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~~~~~~~l~~~ 204 (389)
|+.+..|. .+.|.++++| |++++++. +.|+|+||||+.++++++++.-- ..+ .-|-..-+ .+.|++-
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~---SaDkt~KIWdVs~~slv~t~~~~-~~v~dqqvG~lWq-kd~lItV 296 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTV---SADKTIKIWDVSTNSLVSTWPMG-STVEDQQVGCLWQ-KDHLITV 296 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEe---cCCceEEEEEeeccceEEEeecC-CchhceEEEEEEe-CCeEEEE
Confidence 99998885 3589999999 68899876 56799999999999999999832 222 33333323 7889999
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 260 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~ 260 (389)
|.+|+|.+.|...++.++++.||+..|++++.+||+++|.|++ ||.|--|+.. |..
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 9999999999999999999999999999999999999999999 9999999975 653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=267.23 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=184.3
Q ss_pred EecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe--------EEEEEeecC
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT--------VLKVFYHLL 185 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~--------~l~tl~~~~ 185 (389)
.|+.++.|+||++....++..+. ...|.+|+|+| +.+||++ +.|++|||||+.++. ++.++.+|.
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASg---S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASG---SEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEE---eCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 36789999999987777777775 46899999995 5788876 456899999998752 455788999
Q ss_pred CceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 186 HRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
..|..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.
T Consensus 126 ~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 126 KKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 999999998 666655 568899999999999999877775 567899999999999999998 9999999997 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
++.+|.+......++...|+||+++|+|++.| ..++++|+|||+.+ ++++.++..+...
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~~------------- 263 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNAS------------- 263 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCCc-------------
Confidence 99999875321224556688999999998876 23456899999984 7788776544310
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+....++++|.++++|+.|++||+|+.
T Consensus 264 -------------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 264 -------------------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred -------------------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 35556666778999999999999999973
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=230.57 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=195.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g 152 (389)
..+++||+.++++. . .+. ....+..++|+ |||+.| ++++.|++|++||+.+++.+..+. ...+..++|+ +|
T Consensus 11 ~~v~~~d~~t~~~~--~-~~~--~~~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVT--R-TFP--VGQRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceE--E-EEE--CCCCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 78899999888752 1 222 22335679998 899876 677889999999999999887776 3457789999 57
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC-CcEEEEECCCCeEEEEcccCCCce
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D-~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
+.+++++ +.|++|++||+.+++++..++.+ .....++|+ |++..+++++.+ ..+.+||.++++++..+..+ ..+
T Consensus 85 ~~l~~~~--~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIAN--EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEc--CCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 7776653 44689999999999999888732 345788997 778888888765 46788899999887654332 356
Q ss_pred EEEEEcCCCcEEE-EEc-CCeEEEEeCC-CcEEEEeccCcCCcC-CC-CeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 232 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLWHP-DC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 232 ~sv~fspdg~~la-S~s-D~tIklWd~~-G~~l~tl~gh~~~~~-~~-~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
..++|+|||++|+ ++. |++|++||++ +++++++..+..... .. ....++|+|||++++.+..+ ++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------AN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CC
Confidence 7899999999875 555 9999999997 888887764321100 00 12468999999987665432 46
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVH 385 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIr 385 (389)
+|.+||+++++.+..+..+ ..+++++|+|||+.|++++ .+++|+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVG-----------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eEEEEECCCCcEEEEEEeC-----------------------------------CCcceEEECCCCCEEEEEcCCCCeEE
Confidence 8999999999988776432 3688999999999999874 699999
Q ss_pred EccC
Q 016446 386 VWSN 389 (389)
Q Consensus 386 lW~~ 389 (389)
+||.
T Consensus 275 v~d~ 278 (300)
T TIGR03866 275 VIDV 278 (300)
T ss_pred EEEC
Confidence 9983
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=252.69 Aligned_cols=237 Identities=16% Similarity=0.249 Sum_probs=201.7
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----------CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----------~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
...|+.+..|| |||++|+|||-||-|.+||..+|++...|+ ...|.++.|| |..+||++ +.|+.|
T Consensus 212 ~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG---sqDGkI 287 (508)
T KOG0275|consen 212 QKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG---SQDGKI 287 (508)
T ss_pred cccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc---CcCCcE
Confidence 44577889998 999999999999999999999999765553 3689999999 99999876 566899
Q ss_pred EEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 168 KILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 168 klWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
|+|.++||+||+.|. .|+..+.++.|+ .|+..+++++.|.|+||--+++|+|++.++||...|+.+.|.+||..++|+
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999998 899999999998 789999999999999999999999999999999999999999999999999
Q ss_pred c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ |||||+|+.. ++|+.||+.-.. +..|++|-.-|.. +++++ -. .+||.|-+++ ||.++++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~---d~~vnsv~~~PKnpeh~iVC-Nr-----------sntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGT---DYPVNSVILLPKNPEHFIVC-NR-----------SNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCC---cccceeEEEcCCCCceEEEE-cC-----------CCeEEEEecc-ceEEeee
Confidence 8 9999999996 999999984432 2238888887753 44443 33 3799999965 9999888
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
..-. |- . ..--+...||.|.++++.++|+.+...
T Consensus 431 sSGk---------RE--g--------------------GdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 431 SSGK---------RE--G--------------------GDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred ccCC---------cc--C--------------------CceEEEEecCCCcEEEEEccCcEEEEE
Confidence 5422 00 1 244578899999999999999987654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=231.92 Aligned_cols=282 Identities=11% Similarity=0.167 Sum_probs=231.4
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
+.++.|..++ ++|+.|.||-||++..+ .+.| ++++||+...|-++.+.. .+-.-+..++-+ .|.
T Consensus 8 kr~~~l~~~q-gaV~avryN~dGnY~lt----cGsd------rtvrLWNp~rg~liktYs----ghG~EVlD~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSILDCAQ-GAVRAVRYNVDGNYCLT----CGSD------RTVRLWNPLRGALIKTYS----GHGHEVLDAALS-SDN 71 (307)
T ss_pred hhceeecccc-cceEEEEEccCCCEEEE----cCCC------ceEEeecccccceeeeec----CCCceeeecccc-ccc
Confidence 4567788875 99999999999999888 4567 899999999998733222 222224567776 577
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEEEEEeecCCce
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVLKVFYHLLHRN 188 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l~tl~~~~~~~ 188 (389)
..+|||+.|+.|.+||+++|+.++.+. ...|+.|+|+ ....++++ +.|.+||+||-+. -+.++.|......+
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg---sfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG---SFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec---cccceeEEEEcccCCCCccchhhhhcCce
Confidence 889999999999999999999998886 4689999999 56677654 6778999999764 46778887777888
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.+|... +.-|++||.|||+|.+|++.|++..-.-|| +|+++.|||||+-.+.++ |+|++|-|-+ |++|+..+|
T Consensus 149 ~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 149 SSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred eEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 888876 567899999999999999999987766666 799999999999999999 9999999997 999999999
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|.+.. +-....|+..-...+|||+ ||.|.+||+..+..+.+|+.|..
T Consensus 224 hkn~e---ykldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~------------------- 270 (307)
T KOG0316|consen 224 HKNME---YKLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST------------------- 270 (307)
T ss_pred cccce---eeeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-------------------
Confidence 99852 2356678888888888865 59999999999999999998872
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
--|.+|+|.|--..+.++. ++.+.+|
T Consensus 271 --------------v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 271 --------------VIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred --------------eeEEeeecccCccceeEec-CCceece
Confidence 1389999999888887776 3334455
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=260.73 Aligned_cols=277 Identities=15% Similarity=0.217 Sum_probs=225.6
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCcee-EEEecCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 112 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~pd 112 (389)
++-|.+.||. .-|+.|++.+.. .+++ +++| +++++|.=..++..... .| .++.+++-. ++|.+.|
T Consensus 5 ~ls~~l~gH~-~DVr~v~~~~~~-~i~s----~sRd------~t~~vw~~~~~~~l~~~-~~-~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEGHK-SDVRAVAVTDGV-CIIS----GSRD------GTVKVWAKKGKQYLETH-AF-EGPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEeccCc-cchheeEecCCe-EEee----cCCC------CceeeeeccCcccccce-ec-ccCcceeeccceecccc
Confidence 5667888875 778999987755 5677 5678 88899984444432211 12 134444333 6665335
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
+-.|..|+.|.+|-+|.+.+..++++|.+ ..|.++..- ++. ++++ |-|.|+|+|-+ |+|..++++|+..||
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW~~--~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVWRI--GELVYSLQGHTASVW 144 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec---ccccceEEecc--hhhhcccCCcchhee
Confidence 55688999999999999999999999975 579998877 555 6565 55689999984 899999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 268 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~ 268 (389)
+|++. | .+++++||.|++||||.- |+++++|.||++.|+.+++.|++.+| |++ ||.||+|+++|+++.++.||+
T Consensus 145 Av~~l-~-e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~~ge~l~~~~ght 219 (745)
T KOG0301|consen 145 AVASL-P-ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDLDGEVLLEMHGHT 219 (745)
T ss_pred eeeec-C-CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eecCCceEEEEeccCceeeeeeccc
Confidence 99997 4 449999999999999985 99999999999999999999998755 565 999999999999999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.. |.++...++++.++|+++ |+|+|||+. ++|.+.+.=.+
T Consensus 220 n~-----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPt---------------------- 259 (745)
T KOG0301|consen 220 NF-----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPT---------------------- 259 (745)
T ss_pred eE-----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCc----------------------
Confidence 87 799998899999999865 599999996 49999987433
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-.||++.+=++|. |++|+.||.||+|-
T Consensus 260 ------------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 260 ------------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ------------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 4799999999998 67888899999984
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=246.33 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=223.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccc---eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg---~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
..|+-+.|+ |.++|+++.|.|.-+|...-- ++.+|+-+|+ ..|--|.||||..+|+++ +.+ ..+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wSPDdryLlaC----g~~------e~~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWSPDDRYLLAC----GFD------EVL 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEECCCCCeEEec----Cch------Hhe
Confidence 468889999 999999999999999996543 3588999986 999999999999999995 455 568
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC---cEEEEEEc-CCce
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIKIS-PGIM 154 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~---~V~~vafS-~g~~ 154 (389)
++||+.+|++ ..++.+.+--.+.++++. |||..+++||.|++|--||+ +|+.+....+- .|+++|++ ||.+
T Consensus 294 ~lwDv~tgd~---~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 294 SLWDVDTGDL---RHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeccCCcchh---hhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcE
Confidence 9999999997 334444433456779997 99999999999999999998 88888777753 59999999 7988
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE--
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-- 232 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~-- 232 (389)
+++.. .|..|++.+.++-.+....+.+ +++.+...+ -++.+.+..=.+++|+|||++....++...||...-.
T Consensus 369 vl~v~---~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEe---cccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 87764 5689999999987777655543 778888877 4455555566999999999998888888888876432
Q ss_pred EEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeE
Q 016446 233 AFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 233 sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
.-+|-. +..++|||| |+.|.||+.. |+++.+|.||..- |+.|+++| |-.++||||. ||||
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVswNP~~p~m~ASasD-----------DgtI 507 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSWNPADPEMFASASD-----------DGTI 507 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEecCCCCHHHhhccCC-----------CCeE
Confidence 224654 558899999 9999999996 9999999999865 89999999 5677888765 5999
Q ss_pred EEEeCC
Q 016446 309 NVSSIL 314 (389)
Q Consensus 309 klWd~~ 314 (389)
|||-..
T Consensus 508 RIWg~~ 513 (519)
T KOG0293|consen 508 RIWGPS 513 (519)
T ss_pred EEecCC
Confidence 999753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-28 Score=221.71 Aligned_cols=297 Identities=11% Similarity=0.177 Sum_probs=232.4
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee-EeEeccCCCCCc---ceeEe--eecccCceeEE
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK-IEYIRRGKPDSG---FALFE--SESLKWPGFVE 107 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~-l~~i~~g~~~~~---~~l~~--~~~~~~~~~v~ 107 (389)
+++.+|.. +..|++|+|.|.|...|. |+.- .++++.+-. +-+++.+..-.. ..+|. ..+.+.++.++
T Consensus 24 ~~i~~l~d--sqairav~fhp~g~lyav----gsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILED--SQAIRAVAFHPAGGLYAV----GSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecc--hhheeeEEecCCCceEEe----ccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 45656664 468999999999998888 4444 344433311 223333332111 12555 44778899999
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeE-------EEEecCCcEEEEEEc--C---CceEEEEecCCCCeeEEEEEcCCC
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIS--P---GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~-------l~tl~~~~V~~vafS--~---g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+| |+|++||+||.|++||+--.+.-.| -+..|.+.|++++|- | |.+||++ +-.|..|.+=|-.+|
T Consensus 97 ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~--gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 97 WS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA--GAGDCKIYITDCGRG 173 (350)
T ss_pred ec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec--CCCcceEEEeecCCC
Confidence 98 9999999999999999986654333 255567899999998 2 4455544 455799999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc-------CCCceEEEEEcCCCcEEEEEc-
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-------EFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g-------h~~~v~sv~fspdg~~laS~s- 247 (389)
+.++.+.+|++++.++.-- .+-.+++||.|+|||.||++-..|+.++.. ....|.+|+..|.|++|+||-
T Consensus 174 ~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred CcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 9999999999999988764 377888899999999999999999998743 235799999999999999998
Q ss_pred CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 248 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 248 D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|....|+|+. |+.++.+-.|... |.+|.|||-..||.++|-| ..|||=|++ |.+.+.|.-
T Consensus 252 dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~syd-----------~~ikltdlq-gdla~el~~-- 312 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQ-GDLAHELPI-- 312 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEeccc-----------ceEEEeecc-cchhhcCce--
Confidence 9999999998 8899999999875 8999999999999999875 799999975 665443321
Q ss_pred CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 327 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-.++||-+.+-.+.|.|..-..+|.|.|+|+.||-
T Consensus 313 ---------------------------~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 313 ---------------------------MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ---------------------------EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 12334446788899999999999999999999995
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=261.44 Aligned_cols=242 Identities=12% Similarity=0.164 Sum_probs=195.8
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC-----------------------------------e--------
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----------------------------------T-------- 134 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g-----------------------------------~-------- 134 (389)
.+-+.|++..|| +||+|||+|+.|+.||||.+... +
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 467789999998 99999999999999999997550 0
Q ss_pred ---E--------------EEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe
Q 016446 135 ---M--------------LYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 135 ---~--------------l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~ 195 (389)
+ +..+ |...|.++.+|.+++|+++ +.|+|||||++..-+||++|. |..-|.+|+|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 0111 2247999999988888875 788999999999999999998 678999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc-EEEEeccCcC---C
Q 016446 196 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSFEDHLL---W 270 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~-~l~tl~gh~~---~ 270 (389)
.|+.++++||-|+.||||++...+......-| .-|++++|.|||+..+-|+ +|.+++++..|- +.....=|.. .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 89999999999999999999888877765555 7899999999999999999 999999999864 4333321111 0
Q ss_pred cCCCCeeEEEECCCC--CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 271 HPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG--~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.....|..+.|.|-. +.||+ |+|.-|||.|..+-+++.+|+|+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVT------------SnDSrIRI~d~~~~~lv~KfKG~~n~-------------------- 546 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVT------------SNDSRIRIYDGRDKDLVHKFKGFRNT-------------------- 546 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEe------------cCCCceEEEeccchhhhhhhcccccC--------------------
Confidence 011137899998743 47776 34689999999888999999998731
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..=.+..|++||+.|+|||+|.-|.||++
T Consensus 547 ------------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 ------------SSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ------------CcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 23346799999999999999999999985
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=231.91 Aligned_cols=281 Identities=12% Similarity=0.145 Sum_probs=217.3
Q ss_pred EEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 48 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 48 ~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+|-|||. -+.||.|-+ ..|.-.-...+.|-++..++- ...+. -+.....+.|++++.....++.++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~---q~yGl~G~G~L~ile~~~~~g---i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATA---QHYGLAGNGRLFILEVTDPKG---IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeeh---hhcccccCceEEEEecCCCCC---eEEEEeeecccceeEeeecCCCcceEEEEecCceE
Confidence 78999998 345555432 222222223444444432322 11121 11222234599997667788889999999
Q ss_pred EEEeCCC-CeEEEEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 126 KVFDLKN-YTMLYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 126 klWdl~~-g~~l~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
||||+.- ..++..++ ..+|.+|..+ .++.++++ |-|+|||||+..-++.++||++|...|..++|+|..+..
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe
Confidence 9999753 33777776 4689999999 47777666 556899999999999999999999999999999878899
Q ss_pred EEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEc-CCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCC
Q 016446 201 LLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCN 275 (389)
Q Consensus 201 l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fs-pdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~ 275 (389)
+++.|.|+++||||++. |+.+. ++.|+..+.++.|+ .+-.+|+||+ |++||.||+. ...+..|.||+-.
T Consensus 163 fas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A----- 236 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA----- 236 (311)
T ss_pred EEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE-----
Confidence 99999999999999986 55554 88999999999998 4777889998 9999999996 6788999999987
Q ss_pred eeEEEECCC-CCEEEEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 276 TNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 276 v~sv~fSpd-G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|+.|.|||- -..|||+|-| =|+||||.+.+ -++.+..-|+
T Consensus 237 VRkvk~Sph~~~lLaSasYD-----------mT~riw~~~~~ds~~e~~~~Ht--------------------------- 278 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYD-----------MTVRIWDPERQDSAIETVDHHT--------------------------- 278 (311)
T ss_pred EEEEecCcchhhHhhhcccc-----------ceEEecccccchhhhhhhhccc---------------------------
Confidence 899999996 5678887765 89999998743 3566666666
Q ss_pred cccccccCCEEEEEECC-CCCEEEEecCCCcEEEcc
Q 016446 354 STVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~svafSp-dg~~LaSgs~D~tIrlW~ 388 (389)
+-|..+.||+ ++..+|+.+.|+++.+|+
T Consensus 279 -------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 -------EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -------eEEeccccccccCceeeecccccceeeec
Confidence 6888999998 567899999999999997
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=249.30 Aligned_cols=265 Identities=12% Similarity=0.103 Sum_probs=195.9
Q ss_pred EEeeccEEEE------EecCceEEEEecccceeeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 9 IVAARDIVFA------LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 9 i~~~~~~~a~------~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|..+.+++|. +..++.++||+.....++..+.+|. ..|.+|+|+|+ ++.||+ ++.| ..++||
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~-~~V~~lafsP~~~~lLAS----gS~D------gtIrIW 102 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHT-SSILDLQFNPCFSEILAS----GSED------LTIRVW 102 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCC-CCEEEEEEcCCCCCEEEE----EeCC------CeEEEE
Confidence 3334666665 4457899999987788899999875 89999999997 789999 4577 889999
Q ss_pred EeccCCCC-C--cceeEe-eecccCceeEEEecCCCeE-EEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCce
Q 016446 82 YIRRGKPD-S--GFALFE-SESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIM 154 (389)
Q Consensus 82 ~i~~g~~~-~--~~~l~~-~~~~~~~~~v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~ 154 (389)
+++.+... . ...+.. ..|...+..|+|+ |+++. ||+++.|++|+|||+.+++.+..+. ...|.+++|+ +|.+
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l 181 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL 181 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE
Confidence 99765321 0 001111 2344567889998 88875 6899999999999999999887775 5689999999 6888
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe----cCCCeEEEEeCC----CcEEEEECCC-CeEEEEc-
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE----QFNEKLLVKQEN----ENLQILDVRN-AELMEVS- 224 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~----~~~~~l~~~s~D----~tIklWd~~t-g~~~~~l- 224 (389)
|++++ .|++|+|||+++|+++.++.+|.+.+....+.. +++++|++++.| ++|+|||+++ ++++.+.
T Consensus 182 Lat~s---~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 182 LSGTC---VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEEe---cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 87663 458999999999999999999987654433321 567889998766 4899999995 6676654
Q ss_pred -ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 225 -RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 225 -~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
..+...+..+.++++|.++++|+ |++||+|++. +. +..|.......+ +.+++|.|+--.=+.-|
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p---~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSP---FRSFGFLPKQICDVYKC 325 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCC---ccceEEccccccCchhh
Confidence 33444555566678899999998 9999999997 54 333443222211 58999999755434433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=247.74 Aligned_cols=255 Identities=13% Similarity=0.117 Sum_probs=221.1
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcCC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~g 152 (389)
..++||+-.+|++ ..|+..+ ...+.+|.++ |+|++||.|-.+|+|.|||.++.+.+.++. ...|-+++.+ +
T Consensus 197 ~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 197 QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-C
Confidence 6899999999985 4465432 4667899998 999999999999999999999888776664 4579999998 3
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
..+.+ ++.|+.|..+|+...+.+.. +.+|.+.|-.+.++ +|+.++|+|+.|+.+.|||..+-+.+.++.+|..+|
T Consensus 271 ~~lss---Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 271 SVLSS---GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred ceEEE---ecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 34434 45668999999999988877 88999999999998 789999999999999999999999999999999999
Q ss_pred EEEEEcC-CCcEEEEEc---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 232 SAFIFLY-ENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 232 ~sv~fsp-dg~~laS~s---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
.+++|+| ...+||+|+ |++||+||.. |+++....-.. .|.+|.|||..+-|+++-. -.++
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~Wsk~~kEi~sthG---------~s~n 411 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLIWSKKYKELLSTHG---------YSEN 411 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEEEcCCCCEEEEecC---------CCCC
Confidence 9999999 667899983 9999999996 99988776433 2899999999988888653 3467
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
-|.||+..+-+.+..|.||+ .+|..++.||||+++++|+.|+|+|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~----------------------------------~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHT----------------------------------SRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cEEEEeccccceeeeecCCc----------------------------------ceeEEEEECCCCCEEEEecccCcEEe
Confidence 89999999999999999999 58999999999999999999999999
Q ss_pred ccC
Q 016446 387 WSN 389 (389)
Q Consensus 387 W~~ 389 (389)
|+.
T Consensus 458 w~~ 460 (484)
T KOG0305|consen 458 WNL 460 (484)
T ss_pred ccc
Confidence 973
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=227.25 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=199.3
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
..+.|.+++|+ +||+.|+++++|.+++|+|..+|+++.++. ...|..+.|- +...+..+ +...|.|||+.++.+-
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~s-Stk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHS-STKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEc-cCCCCCceEEEEeecC
Confidence 45667899998 899999999999999999999999999997 4589999999 55444333 4567899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
+.++.|.||...|.++..+ |-++.++++|.|+||||||++..+|...+.-- ....+||.|+|-++|.+. -..|||+
T Consensus 91 kylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEE
Confidence 9999999999999999998 55799999999999999999999987765433 334589999999999998 5599999
Q ss_pred eCC---CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 255 NFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 255 d~~---G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
|++ .....++.=... +.+..+.+.|||||++|+-+.. .+-+.|-|.-+|..+.++.+|...
T Consensus 168 D~Rs~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~--- 231 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA--- 231 (311)
T ss_pred EecccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC---
Confidence 984 345555542211 1123589999999999998654 378999999999999999999831
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+ .-+ -+..|+|||+.+.+|+.||+|.+|+.
T Consensus 232 ---------~------------------~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 ---------G------------------NLP-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ---------C------------------Ccc-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 0 012 46899999999999999999999973
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=237.13 Aligned_cols=231 Identities=14% Similarity=0.174 Sum_probs=190.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCce---EEEEecCCCCeeEEEEEc
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIM---LLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~---la~~~~~s~d~tiklWd~ 172 (389)
+-.|+.+|.-. ++.|.+|+.||++|+||+ .|++++++. .+.|.+++.- ++.. ++++ +.|+|++||-+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa---s~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA---SMDQTLRLWKW 176 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEe---cCCceEEEEEe
Confidence 33455666553 689999999999999997 788776664 5789887776 5443 6664 77899999999
Q ss_pred CCCeEE----EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-------------------------CCeEEEE
Q 016446 173 EDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-------------------------NAELMEV 223 (389)
Q Consensus 173 ~tG~~l----~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-------------------------tg~~~~~ 223 (389)
+.|+.. +.-.||-..|.+|... +++.+++++|.|.+|+||+.+ ++.++-+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 887743 3345899999999987 778999999999999999932 1336778
Q ss_pred cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 224 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 224 l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
+.||...|.+|.|++ ...+.|++ |.|||.||+. |.++-++.+... .++|..+|.-++||+||.|
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i~~~~~~~Ll~~gssd------- 321 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCISYSPLSKLLASGSSD------- 321 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEeecccccceeeecCCC-------
Confidence 999999999999999 44566777 9999999997 999999987654 5899999999999998765
Q ss_pred CCCCCeEEEEeCCCCe---EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEE
Q 016446 302 EGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYT 377 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaS 377 (389)
.-|||||.++|. ..++|.||+ ++|.+|.+||.. ..|+|
T Consensus 322 ----r~irl~DPR~~~gs~v~~s~~gH~----------------------------------nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 322 ----RHIRLWDPRTGDGSVVSQSLIGHK----------------------------------NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ----CceeecCCCCCCCceeEEeeecch----------------------------------hhhhheecCCCCceEEEE
Confidence 899999998865 457899998 699999999976 57999
Q ss_pred ecCCCcEEEccC
Q 016446 378 GNRHGLVHVWSN 389 (389)
Q Consensus 378 gs~D~tIrlW~~ 389 (389)
||.|+++||||.
T Consensus 364 ~S~D~t~klWDv 375 (423)
T KOG0313|consen 364 GSYDNTVKLWDV 375 (423)
T ss_pred EecCCeEEEEEe
Confidence 999999999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=240.16 Aligned_cols=287 Identities=17% Similarity=0.205 Sum_probs=218.9
Q ss_pred EEEEecccceeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 25 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 25 iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+-|+..+--. +...| +.|.+|.|||.-. -+|.++ + -.+-|.+..+........=|. .-+
T Consensus 11 ~~~w~~~~~~~---~~ke~-~~vssl~fsp~~P~d~aVt~---S--------~rvqly~~~~~~~~k~~srFk----~~v 71 (487)
T KOG0310|consen 11 IRYWRQETFPP---VHKEH-NSVSSLCFSPKHPYDFAVTS---S--------VRVQLYSSVTRSVRKTFSRFK----DVV 71 (487)
T ss_pred chhhhhhcccc---ccccc-CcceeEecCCCCCCceEEec---c--------cEEEEEecchhhhhhhHHhhc----cce
Confidence 45576543222 22334 7899999999432 122221 1 233445544433321111222 224
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.++.|- .||++||.|...|-|||+|.++-..++.+ |+.+|..+.|+| +.+++++ +++|+.+|+||+.++.....
T Consensus 72 ~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s--~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 72 YSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS--GSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred eEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe--cCCCceEEEEEcCCcEEEEE
Confidence 679997 89999999999999999997664444555 467999999994 4444444 46689999999999998779
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-- 257 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-- 257 (389)
+.+|.+-|++.++++..+..+++||+||+||+||.++. +.+..+ .|..+|.+|.|.|.|.++||++-..||+||+.
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 99999999999999655567888999999999999986 444444 48889999999999999999999999999995
Q ss_pred CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCC
Q 016446 258 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 337 (389)
Q Consensus 258 G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~ 337 (389)
|+++..+..|.-- |.++.+..|++.|.|||-| +.+|++|+.+=+.+..+.=-
T Consensus 228 ~qll~~~~~H~Kt-----VTcL~l~s~~~rLlS~sLD-----------~~VKVfd~t~~Kvv~s~~~~------------ 279 (487)
T KOG0310|consen 228 GQLLTSMFNHNKT-----VTCLRLASDSTRLLSGSLD-----------RHVKVFDTTNYKVVHSWKYP------------ 279 (487)
T ss_pred ceehhhhhcccce-----EEEEEeecCCceEeecccc-----------cceEEEEccceEEEEeeecc------------
Confidence 5667667668654 8999999999999998765 99999998888888777532
Q ss_pred CCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 338 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
.+|.+++.|||++++|-|-.||.+-
T Consensus 280 -----------------------~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 280 -----------------------GPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred -----------------------cceeeEEecCCCceEEEecccceee
Confidence 4999999999999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=248.89 Aligned_cols=239 Identities=16% Similarity=0.240 Sum_probs=195.6
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-CeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
+|...+.++.|.|-.|.+|+|++.|+.|+||++.+ ++|++++.+ ..|.+++|| .|..++++ +.|++|||||++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~---sfD~~lKlwDtE 288 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA---SFDRFLKLWDTE 288 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee---ecceeeeeeccc
Confidence 44444566888843899999999999999999976 889999874 589999999 79988876 667999999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
||+|+..|.. ......|.|. |++ ..+++|..|+.|+.||+++|+.++....|-..|..+.|-|+|++++|++ |+++
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred cceEEEEEec-CCCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 9999999973 2455899998 566 7788899999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---EEEEecCCCC
Q 016446 252 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNC 327 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---~l~tl~gH~~ 327 (389)
+||+.+ +-.++-...+... ...++..+|+|++++.=|.| +.|-|+.+..-- .-..+.||..
T Consensus 367 riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~d-----------N~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMD-----------NYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred EEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccC-----------ceEEEEecccccccCHhhhhcceec
Confidence 999987 6544433322211 14689999999999987665 789898864311 2345678863
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ .-=..|.|||||.+|+||+.||.+-+||
T Consensus 432 a--------------------------------Gys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 432 A--------------------------------GYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred c--------------------------------CceeeEEEcCCCCeEEeecCCccEEEee
Confidence 1 1335699999999999999999999998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=219.99 Aligned_cols=282 Identities=11% Similarity=0.127 Sum_probs=233.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
+.+++|. ..|.||+|+-+|..|++ |+.| .++.+|.+..+++ ...+-...+...+..+.++|++-.++
T Consensus 14 r~~~~~~-~~v~Sv~wn~~g~~las----gs~d------ktv~v~n~e~~r~--~~~~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 14 RELQGHV-QKVHSVAWNCDGTKLAS----GSFD------KTVSVWNLERDRF--RKELVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred HHhhhhh-hcceEEEEcccCceeee----cccC------CceEEEEecchhh--hhhhcccCCCcchhhheeCCCCCcce
Confidence 3456654 78999999999999999 5677 8888999877755 11121123334455689998888999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
|+++.|++||+||...++|..... ...=.-+.+| ||+++|++.. |..|-.-|+++-+...+.+. .-.+.++.|+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k---dD~it~id~r~~~~~~~~~~-~~e~ne~~w~ 156 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK---DDRITFIDARTYKIVNEEQF-KFEVNEISWN 156 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC---cccEEEEEecccceeehhcc-cceeeeeeec
Confidence 999999999999999999987775 3333356778 6999988744 45788889888887776652 2456888998
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 272 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~ 272 (389)
.+++.+......|+|.|-....-++++.++.|..--.+|.|+|+|++||+|+ |..+-|||++ --|++.+.-|.=+
T Consensus 157 -~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp-- 233 (313)
T KOG1407|consen 157 -NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP-- 233 (313)
T ss_pred -CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--
Confidence 6688888888999999999999999999999999999999999999999999 9999999997 7899999988766
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|+.+.||.||++|||||+| .-|-|=+++||..+..++ |+
T Consensus 234 ---VRTlSFS~dg~~lASaSED-----------h~IDIA~vetGd~~~eI~-~~-------------------------- 272 (313)
T KOG1407|consen 234 ---VRTLSFSHDGRMLASASED-----------HFIDIAEVETGDRVWEIP-CE-------------------------- 272 (313)
T ss_pred ---eEEEEeccCcceeeccCcc-----------ceEEeEecccCCeEEEee-cc--------------------------
Confidence 8999999999999998775 799999999999999886 33
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCC---------CcEEEc
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRH---------GLVHVW 387 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D---------~tIrlW 387 (389)
.+..+||++|....||=+..| |+||+.
T Consensus 273 --------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 273 --------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred --------CCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 488999999999999988755 577765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=248.08 Aligned_cols=228 Identities=15% Similarity=0.249 Sum_probs=199.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCC--Ce----EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YT----MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG- 175 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~--g~----~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG- 175 (389)
+..+.|++++|-+||.||+||+|+... ++ ++.+++ .+||.+++.. .|..|+++ |.|-|||+|+.+-+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~---SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA---SSDTTVKVWNAHKDN 106 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe---cCCceEEEeecccCc
Confidence 455568999999999999999999752 21 355554 4799999999 78888776 45589999999988
Q ss_pred -eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EE--------Ecc-cCCCceEEEEEcCCCcEE
Q 016446 176 -TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME--------VSR-TEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 176 -~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~--------~l~-gh~~~v~sv~fspdg~~l 243 (389)
-|+.++..|.+-|..+++.++.....|+|+-|+.|.|||+.+|.. +. -+. |+...|+++|-+|.|..|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 699999999999999999777788999999999999999998832 22 233 899999999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
++|+ .+-+++||-. ++.+-.|.||..- |..+..++||+.++|+|. ||||||||+...+|++|
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeee
Confidence 9999 9999999996 8888889999875 899999999999999865 59999999999999999
Q ss_pred ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 322 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 322 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
+..|. +.||++.-+|+=+.+++|++||.|..
T Consensus 251 ~~vH~----------------------------------e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 251 YIVHK----------------------------------EGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred EEecc----------------------------------CceEEEeeCCCcceEEecCCCCcEEe
Confidence 99998 58999999999999999999998864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=224.18 Aligned_cols=274 Identities=16% Similarity=0.130 Sum_probs=224.0
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
-.|.++-|+ |.+||++.-+|.|++|+..+|..-+.+-..- +-+-=+.+.|-+..|+. |+.| ..+..|
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~-~dieWl~WHp~a~illA----G~~D------GsvWmw 175 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV-EDIEWLKWHPRAHILLA----GSTD------GSVWMW 175 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc-CceEEEEecccccEEEe----ecCC------CcEEEE
Confidence 368999999 9999999999999999999999888886443 45555899999998877 6677 777788
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC---CcEEEEEEc-CCceEEE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~---~~V~~vafS-~g~~la~ 157 (389)
.++.+.. .++|. .+......=.|. |||+.++++..|+||++||+++|++++.+.+ ..-..+.++ .+..+..
T Consensus 176 ~ip~~~~---~kv~~-Gh~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 176 QIPSQAL---CKVMS-GHNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred ECCCcce---eeEec-CCCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 8877532 33544 222222335897 8999999999999999999999999998873 467789999 7777766
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEe--------ecCCceeEEEEEecCC--CeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFY--------HLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~--------~~~~~~~~v~f~~~~~--~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
+ +.++.+++-+..+|+.+..+. .+.+.+.+|.|++... ...|.|+-||+|-|||.++-.+++.+. |
T Consensus 251 g---~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h 326 (399)
T KOG0296|consen 251 G---NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H 326 (399)
T ss_pred c---cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C
Confidence 5 455799999999999998887 4666678888874332 234457899999999999888777655 7
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
...|..+.|.+ ..+|++++ ||+|++||.+ |+|+.++.||+.. |...+++||+++++++|.|
T Consensus 327 e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s~D----------- 389 (399)
T KOG0296|consen 327 EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVSDD----------- 389 (399)
T ss_pred CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEecCC-----------
Confidence 78899999999 67777777 9999999997 9999999999987 7999999999999999875
Q ss_pred CeEEEEeCC
Q 016446 306 GSINVSSIL 314 (389)
Q Consensus 306 ~tIklWd~~ 314 (389)
++.|++++.
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 899999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=240.99 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=212.5
Q ss_pred cEEEEEee-ccEEEEEecCceEEEEecccceeee--eeecCCcceEEE-EEEee-CCCEEEEEEEeecCCCcceeeeeee
Q 016446 5 KVIEIVAA-RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRS-LFYNK-NNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 5 ~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~--tl~~~~~~~v~s-v~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
-|+.+.+- +-.|+++++|||+|+|+...++.+. .+.+++ ++|.. +.|-+ |+..|.+ |+.| ..+-
T Consensus 16 DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~-g~i~~~i~y~e~~~~~l~~----g~~D------~~i~ 84 (745)
T KOG0301|consen 16 DVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK-GFIANSICYAESDKGRLVV----GGMD------TTII 84 (745)
T ss_pred chheeEecCCeEEeecCCCCceeeeeccCcccccceecccCc-ceeeccceeccccCcceEe----eccc------ceEE
Confidence 35555555 6679999999999999986455554 466665 77776 88875 5555777 6788 7887
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLI 157 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~ 157 (389)
+|.+-++.+ ...|+. |...+.+++-. .++. |+|||.|.|+|+|- .|+|..++.+ ..||+|++=|.+.+++
T Consensus 85 v~~~~~~~P--~~~Lkg--H~snVC~ls~~-~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 85 VFKLSQAEP--LYTLKG--HKSNVCSLSIG-EDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred EEecCCCCc--hhhhhc--cccceeeeecC-CcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCCcEEe
Confidence 888776665 333544 44455677754 4665 99999999999997 6788877764 5799999987667767
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
+ +.|++||||. .|+++++|.+|.+-|+.+++.+ +..+++.+.||.||+||+ +|+|+....||+..|+++...
T Consensus 157 g---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 157 G---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred c---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 5 5679999999 5999999999999999999973 668999999999999999 999999999999999999988
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
++++.++|.+ |+|+|||+.. +|++.++ |.. ..||++.+=++|.+++-| +||-||||...
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~-e~~q~I~-lPt----tsiWsa~~L~NgDIvvg~------------SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD-ECVQVIT-LPT----TSIWSAKVLLNGDIVVGG------------SDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC-ceEEEEe-cCc----cceEEEEEeeCCCEEEec------------cCceEEEEEec
Confidence 8888999998 9999999977 8888886 222 238999999999976643 36999999854
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=223.67 Aligned_cols=294 Identities=13% Similarity=0.189 Sum_probs=223.5
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec------------cCCCCCcceeEe--eecc
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFE--SESL 100 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~------------~g~~~~~~~l~~--~~~~ 100 (389)
+-+.|.-| ..++++-+|||||..+|+ |+.| -.|+|-|+. .|+.....++-. -+|.
T Consensus 104 Et~ylt~H-K~~cR~aafs~DG~lvAT----GsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTSH-KSPCRAAAFSPDGSLVAT----GSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEeec-ccceeeeeeCCCCcEEEc----cCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 45677776 489999999999999999 5566 667777764 222211112111 1244
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec-CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~-~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG 175 (389)
.-+..++|. |-.++|+|||.|+||||+|...-. -...++ .+.|+++.|.| |.+|+++. +..++||+|++|-
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNTY 248 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccce
Confidence 445568997 899999999999999999985433 224455 47899999997 88888762 2368999999999
Q ss_pred eEEEEEe---ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCC-ceEEEEEcCCCcEEEEEc-CC
Q 016446 176 TVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFM-TPSAFIFLYENQLFLTFR-NR 249 (389)
Q Consensus 176 ~~l~tl~---~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~-~v~sv~fspdg~~laS~s-D~ 249 (389)
||...-. .|.+.+..|.++ +.+...+++|.||-|||||=-+++|++++ +.|.+ .|-+..|..+|++++|++ |.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 9987654 788899999998 56778888999999999999999999987 45654 789999999999999999 99
Q ss_pred eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCC
Q 016446 250 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNC 327 (389)
Q Consensus 250 tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~ 327 (389)
++|||.+. |+++++..|-..--+..--....|.....|.+.-.+- .+.+--||..++..+..+ .||+
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaRtadr~~l~slgHn- 396 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDARTADRVALLSLGHN- 396 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeeccccchhhhhhcccCCC-
Confidence 99999996 9999988875210000001334566666666653221 256778999988776655 4677
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|..+.-||.+.-..++|.|-.+|+|-
T Consensus 397 ---------------------------------~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 397 ---------------------------------GAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ---------------------------------CCceEEEeCCCCCceeeecccceeeeee
Confidence 5899999999999999999999999994
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-28 Score=236.40 Aligned_cols=273 Identities=13% Similarity=0.134 Sum_probs=223.2
Q ss_pred cccEEEEEee-c-cEEEEEecCceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 3 RTKVIEIVAA-R-DIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 3 ~~~v~~i~~~-~-~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+.+|-+|.|- + +++|++..|.-|++|+..-++ .+.+|-|.. ..|.++.|-++|+.+|.+ +.| ...
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAa----s~d------~~~ 243 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAA----SND------KNL 243 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEee----cCC------Cce
Confidence 4678888898 4 999999999999999986555 677888875 789999999999999884 577 788
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEE
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLI 157 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~ 157 (389)
++|++..+++..+ |- .|..-+.++.|. -....++||+.|.|||+||+..+.|..+.- ...+.+|..++ ..++
T Consensus 244 r~Wnvd~~r~~~T--Ls--GHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-~~~~- 316 (459)
T KOG0288|consen 244 RLWNVDSLRLRHT--LS--GHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-SDVI- 316 (459)
T ss_pred eeeeccchhhhhh--hc--ccccceeeehhh-ccccceeeccccchhhhhhhhhhheeccccccccccceEecc-eeee-
Confidence 9999988776222 21 244445678886 333349999999999999999999987764 77888888873 2332
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC----CceEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPSA 233 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~----~~v~s 233 (389)
++..|++||+||++++.+..+.+.+ +.+.+|..+ +++-.+++.+.|.|+++.|+++.+..+++.... .-.+.
T Consensus 317 --SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 317 --SGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred --ecccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 3678899999999999999999976 599999998 677888888999999999999999988874321 12778
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
+.||||+.|+|+|| ||.|+||++. |+|-..|...... ..|.+++|+|-|..|++++.+ +.+.||
T Consensus 393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~-----------~~v~lW 458 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQ-----------KAVTLW 458 (459)
T ss_pred eEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccCC-----------cceEec
Confidence 99999999999999 9999999996 9998888754432 138999999999999998664 899999
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=247.61 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=223.8
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeec--CCCcceeeeeeeEeEecc-C------CCCCcceeEe-eecccCceeEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYAS--DNFSSLKCRSTKIEYIRR-G------KPDSGFALFE-SESLKWPGFVE 107 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~--~d~~~l~~~~~~l~~i~~-g------~~~~~~~l~~-~~~~~~~~~v~ 107 (389)
++-+|+...|.+|..+|||..+|+ |+ .| ..+.||.... . ..+--..|++ ..|.+.+..|.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aT----gGq~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFAT----GGQVLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCceeEec----CCcccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEE
Confidence 455677788999999999999888 55 55 4445776410 1 0010122555 45778788899
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCC-------C-----------eEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~-------g-----------~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
|| |||++||+||+|+-|.+|.... | ++..+| |...|.+|++| ++.+||+. +-|++
T Consensus 77 ~S-~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~---s~Dns 152 (942)
T KOG0973|consen 77 FS-PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV---SLDNS 152 (942)
T ss_pred EC-CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe---cccce
Confidence 98 9999999999999999999762 1 133344 45789999999 57788765 66799
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC------ceEEEEEcCCC
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYEN 240 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~------~v~sv~fspdg 240 (389)
|-|||..+.+++++|.+|+..|..|.|- |-|+++|+-+.|+|||+|+..+-.+.+...+++. ....+.|||||
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred EEEEccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 9999999999999999999999999997 6799999999999999999777667777766654 56778899999
Q ss_pred cEEEEEc--C---CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCc
Q 016446 241 QLFLTFR--N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPE 297 (389)
Q Consensus 241 ~~laS~s--D---~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd-----G~------------~laS~s~D~~~ 297 (389)
++|++.. . .++.|-+.+ .++=..|-||..+ +..|+|+|- .+ .+|+||
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS----- 301 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS----- 301 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEec-----
Confidence 9999983 3 389999986 6778899999998 789999991 11 566665
Q ss_pred ccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 298 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
.|++|-||....-+.+.. .|+- + . ..|..+++||||-.|..
T Consensus 302 ------qDrSlSVW~T~~~RPl~v--i~~l--f----------~-------------------~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 302 ------QDRSLSVWNTALPRPLFV--IHNL--F----------N-------------------KSIVDMSWSPDGFSLFA 342 (942)
T ss_pred ------CCccEEEEecCCCCchhh--hhhh--h----------c-------------------CceeeeeEcCCCCeEEE
Confidence 469999999755555433 3441 0 0 48999999999999999
Q ss_pred ecCCCcEEEc
Q 016446 378 GNRHGLVHVW 387 (389)
Q Consensus 378 gs~D~tIrlW 387 (389)
+|.||+|.+-
T Consensus 343 cS~DGtV~~i 352 (942)
T KOG0973|consen 343 CSLDGTVALI 352 (942)
T ss_pred EecCCeEEEE
Confidence 9999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=220.94 Aligned_cols=275 Identities=15% Similarity=0.189 Sum_probs=229.0
Q ss_pred cEEEEEee-----ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 5 KVIEIVAA-----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 5 ~v~~i~~~-----~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
.|-++.|+ |-.|.++|.|+.=-|-+-+||--+-||.||. ..||+-.++.+.-.-||++ .| -+++
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk-gavw~~~l~~na~~aasaa----ad------ftak 84 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK-GAVWSATLNKNATRAASAA----AD------FTAK 84 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC-cceeeeecCchhhhhhhhc----cc------chhh
Confidence 46777777 8899999999999999999999999999985 9999999999887777754 56 6788
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEe--cCCcEEEEEEc-CCceE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKHVQEIKIS-PGIML 155 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl--~~~~V~~vafS-~g~~l 155 (389)
+||..+|.... -|. +..-+.+|+|+ .|..+|.+|+.++.+|++|++..+ +...+ |...|+.+-|. -++.+
T Consensus 85 vw~a~tgdelh---sf~--hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELH---SFE--HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhhhhhhhhh---hhh--hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence 99999998732 233 33345899998 899999999999999999998666 44444 45689999999 56666
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
+++ ..|+||||||..||+..++|.. .+++.++..+ + ++.+++..+.+.|+.||..+-.+++..+-- --|.+..
T Consensus 159 LSS---add~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs-~-dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SAS 231 (334)
T KOG0278|consen 159 LSS---ADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVS-Q-DGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESAS 231 (334)
T ss_pred Eee---ccCCceEEEEeccCcEEEEEec-CCCCcceeec-c-CCCEEEEecCceeEEeccccccceeeccCc-ccccccc
Confidence 554 4579999999999999999985 3888999987 4 556777778899999999998887764432 3588889
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe-ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~-G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.+|+...++.|+ |.-+.-+|.+ |+.+..+ +||-++ |-+|.|||||..-||||+ |||||||.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-----VhcVrFSPdGE~yAsGSE-----------DGTirlWQ 295 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-----VHCVRFSPDGELYASGSE-----------DGTIRLWQ 295 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-----eEEEEECCCCceeeccCC-----------CceEEEEE
Confidence 999999999999 9999999997 9988886 899888 899999999999999876 59999999
Q ss_pred CCCCeEE
Q 016446 313 ILTGKCL 319 (389)
Q Consensus 313 ~~tg~~l 319 (389)
...|+.-
T Consensus 296 t~~~~~~ 302 (334)
T KOG0278|consen 296 TTPGKTY 302 (334)
T ss_pred ecCCCch
Confidence 8766643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=212.49 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=213.3
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC--
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-- 121 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-- 121 (389)
...|.++.|+++|+.|++++ .| -+++|+|...|+.. ..+-...+. +.-+.|-.++ ..+..+|.
T Consensus 14 ~~~i~sl~fs~~G~~litss----~d------Dsl~LYd~~~g~~~--~ti~skkyG--~~~~~Fth~~-~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS----ED------DSLRLYDSLSGKQV--KTINSKKYG--VDLACFTHHS-NTVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEec----CC------CeEEEEEcCCCcee--eEeeccccc--ccEEEEecCC-ceEEEccCCC
Confidence 36899999999999999943 55 58999999999872 223222222 3457887544 44555565
Q ss_pred CCeEEEEeCCCCeEEEEecC--CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~~--~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
|.|||.=++.+.+.++.+.+ ..|.++..|| +..++++ +.|+||||||++.-+|..-+.- .+-.-+||. |.|
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfD-p~G 152 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFD-PEG 152 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEec--CCCcceeEC-CCC
Confidence 99999999999999988875 5899999997 6677665 6679999999998888877762 334556665 666
Q ss_pred CeEEEEeCCCcEEEEECCC--CeEEEEcc---cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC-CCcEEEEeccCcCCc
Q 016446 199 EKLLVKQENENLQILDVRN--AELMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 271 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~t--g~~~~~l~---gh~~~v~sv~fspdg~~laS~s-D~tIklWd~-~G~~l~tl~gh~~~~ 271 (389)
-.+|++...+.|||+|++. +.+.+++. +-......+-|||||+.|+-+. .+.+.+-|. +|.++.++++|...-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 6677777666999999996 44555543 3466788899999999988887 889999998 699999999988652
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCcccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
.. --+..|+|||+++++|+. ||+|.+|++++|+.+..++| |.
T Consensus 233 ~~--~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~------------------------ 275 (311)
T KOG1446|consen 233 NL--PLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNG------------------------ 275 (311)
T ss_pred Cc--ceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCC------------------------
Confidence 11 148899999999999875 49999999999999999998 44
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.++.++-|+|.--++||++. .+-+|
T Consensus 276 ----------~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 276 ----------GPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred ----------CCccccccCCceeeeeecCc--eEEEE
Confidence 48889999999999988764 34444
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=234.31 Aligned_cols=320 Identities=15% Similarity=0.220 Sum_probs=244.4
Q ss_pred EEEeeccEEEEEecCceEEEEecccceeeeeeecCCcce-----------------------EEEEEEeeCCCEEEEEEE
Q 016446 8 EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEV-----------------------IRSLFYNKNNDSLITVSV 64 (389)
Q Consensus 8 ~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~-----------------------v~sv~~spdg~~l~s~s~ 64 (389)
+|-.+.++||++|-+|+|||++.+|=..+-||+..|.-. --...|.|..+.|..+-
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY- 343 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY- 343 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE-
Confidence 566679999999999999999998766777776654211 11345777777776643
Q ss_pred eecCCCcceeeeeeeEeEecc----CCCC----CcceeEeeeccc-Ccee--EEEecCCCeEEEEecCCCeEEEEeCCCC
Q 016446 65 YASDNFSSLKCRSTKIEYIRR----GKPD----SGFALFESESLK-WPGF--VEFDDVNGKVLTYSAQDSIYKVFDLKNY 133 (389)
Q Consensus 65 ~~~~d~~~l~~~~~~l~~i~~----g~~~----~~~~l~~~~~~~-~~~~--v~Fs~pdG~~Las~s~D~tiklWdl~~g 133 (389)
.| |.+++||++. ||+. +..-+|.-+... .+.. -+-- |.|. .+++|.|+||||||++.+
T Consensus 344 ---nd------hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl-p~~c-F~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 344 ---ND------HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL-PRGC-FTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred ---cC------ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC-Cccc-eeEecCCCcEEEeecccc
Confidence 56 8999999954 4442 111133322111 0000 1221 4454 667899999999999753
Q ss_pred e---EEE-E------------------ec-----------------CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 134 T---MLY-S------------------IS-----------------DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 134 ~---~l~-t------------------l~-----------------~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
. .++ . ++ ...|++|++| +|+.||++... +++|+.+++
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~---GnlrVy~Lq 489 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG---GNLRVYDLQ 489 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc---CceEEEEeh
Confidence 2 110 0 00 1369999999 69999987544 799999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEE--------------
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIF-------------- 236 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~f-------------- 236 (389)
.-+.+-+++.|...+..+.|+.|. ...||+++.|.-|.++|+.. =.++++|.+|...|++|.|
T Consensus 490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 888888888999999999998664 24566689999999999974 3568899999999999999
Q ss_pred -----------------------------------cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 237 -----------------------------------LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 237 -----------------------------------spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
-|.-++++++. |+.|+|+|++ |+++++|+|..+-. +..-.|
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv 647 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKV 647 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC--CceEEE
Confidence 23456788998 9999999997 99999999754421 235688
Q ss_pred EECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 280 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
...|.|-|||+.|.| +|+-+.|.-+|+|++++.||.
T Consensus 648 ~lDPSgiY~atScsd-----------ktl~~~Df~sgEcvA~m~GHs--------------------------------- 683 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSD-----------KTLCFVDFVSGECVAQMTGHS--------------------------------- 683 (1080)
T ss_pred EECCCccEEEEeecC-----------CceEEEEeccchhhhhhcCcc---------------------------------
Confidence 999999999999875 899999999999999999998
Q ss_pred cCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 360 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 360 ~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.|+.+-|+||-+.|+|.+.||.|-+|+.
T Consensus 684 -E~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 684 -EAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -hheeeeeecccchhheeecCCceEEEEEC
Confidence 69999999999999999999999999973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=234.25 Aligned_cols=229 Identities=16% Similarity=0.165 Sum_probs=192.5
Q ss_pred CceeEEEec--CCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 102 WPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 102 ~~~~v~Fs~--pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
.+.+++||| |+. ..+++| -.+.|++..+...+.++. ...|.++.|- ||..||++. ..+-||++|+.+..
T Consensus 28 ~vssl~fsp~~P~d-~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD---~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYD-FAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD---ESGHVKVFDMKSRV 101 (487)
T ss_pred cceeEecCCCCCCc-eEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC---CcCcEEEeccccHH
Confidence 467899984 222 333444 578999987777777776 5789999999 898888763 34899999988877
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCeEEEE
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVW 254 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~tIklW 254 (389)
.|+.+..|++++..+.|.+.++..+++++.|+.+|+||+.++...-.+.||++.|++.+|+|.. .+++||+ ||+||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999999997666777778999999999999999755899999999999999964 5899999 9999999
Q ss_pred eCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCc
Q 016446 255 NFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKV 331 (389)
Q Consensus 255 d~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~ 331 (389)
|.. +..+.+|. |..+ |.+|.|-|.|.+|||++. ..||+||+.+|. .+..+..|.
T Consensus 182 DtR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAgG------------n~vkVWDl~~G~qll~~~~~H~----- 238 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAGG------------NSVKVWDLTTGGQLLTSMFNHN----- 238 (487)
T ss_pred EeccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcCC------------CeEEEEEecCCceehhhhhccc-----
Confidence 995 57788885 7766 799999999999999875 589999998655 454454487
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|+|+.|..|++.|+|||-|+-||++|
T Consensus 239 -----------------------------KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 239 -----------------------------KTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred -----------------------------ceEEEEEeecCCceEeecccccceEEEE
Confidence 6999999999999999999999999987
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=229.21 Aligned_cols=265 Identities=12% Similarity=0.138 Sum_probs=220.4
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
..||++ ....|.||+..+|+...-...+ .+.|.||.|+|+|+.||. |..+ ..+.|||+...+.. ..
T Consensus 189 n~laVa-lg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~--~~ 254 (484)
T KOG0305|consen 189 NVLAVA-LGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKT--RT 254 (484)
T ss_pred CeEEEE-ecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhcccc--cc
Confidence 344544 4678899999999855544544 589999999999999999 6777 89999998776652 22
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE-e--cCCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t-l--~~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
+.. .+...+.++++. +..|.+|+.|+.|..+|+...+.+.. + |...|..++++ ++.+||++ +.|+.+.|
T Consensus 255 ~~~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~I 327 (484)
T KOG0305|consen 255 LRG-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFI 327 (484)
T ss_pred ccC-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEe
Confidence 221 155667889995 67899999999999999988875433 4 45789999999 89999865 77899999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF- 246 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~- 246 (389)
||...-+.+.++..|...|+.++|.|...+.||+|+ .|++||+||..+|++++.+.... +|-+++|+|..+-|+++
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs-QVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS-QVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC-ceeeEEEcCCCCEEEEec
Confidence 999888899999999999999999977778888864 99999999999999999877654 89999999988666665
Q ss_pred c--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 247 R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 247 s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
+ ++.|.||+.. -+.+..|.||... |..++.||||+++++|+.| .|+|+|++-..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~D-----------ETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAAD-----------ETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEeccc-----------CcEEeccccCC
Confidence 4 8899999995 8899999999988 8999999999999999875 89999998753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=214.48 Aligned_cols=232 Identities=10% Similarity=0.143 Sum_probs=187.9
Q ss_pred eeEEEecC-CCeEE-EEec-----CCCeEEEEeCCCCeEEEEe---c-CCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 104 GFVEFDDV-NGKVL-TYSA-----QDSIYKVFDLKNYTMLYSI---S-DKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 104 ~~v~Fs~p-dG~~L-as~s-----~D~tiklWdl~~g~~l~tl---~-~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
++|.|||- ++++. |++. ..|.+-|=++..++-+..+ . .+.+.+|++|+ ..+++++ +.|+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLF 88 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE---ecCceEEEe
Confidence 57999852 33332 2222 3788888888655544333 2 57899999993 4455454 456899999
Q ss_pred EcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-
Q 016446 171 SIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR- 247 (389)
Q Consensus 171 d~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s- 247 (389)
|+. .-..|+.++.|...|.+|.+++...+.++++|.|+|||||+..-++-++|++||..-|+..+||| ...++||+|
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 953 23478888999999999999987788899999999999999999999999999999999999998 678999998
Q ss_pred CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEec
Q 016446 248 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 323 (389)
Q Consensus 248 D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~ 323 (389)
|++.||||++ |+.+. ++.|... +.+..|+. |-..||+|+ .|++||.||+.. ...+..|.
T Consensus 169 d~~l~lwdvr~~gk~~~-i~ah~~E-----il~cdw~ky~~~vl~Tg~-----------vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMS-IEAHNSE-----ILCCDWSKYNHNVLATGG-----------VDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CceEEEEEecCCCceeE-EEeccce-----eEeecccccCCcEEEecC-----------CCceEEEEehhhccccceeec
Confidence 9999999995 88776 8889854 68888887 667777765 469999999976 45788999
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
||+ -.|..|.|||-. ..|||+|.|=|+||||.
T Consensus 232 gh~----------------------------------~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 232 GHG----------------------------------LAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred CCc----------------------------------eEEEEEecCcchhhHhhhccccceEEeccc
Confidence 998 589999999976 58999999999999983
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=227.07 Aligned_cols=306 Identities=14% Similarity=0.164 Sum_probs=240.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|+ |+.++..|.++|||+.+|+.++++++.. ..|.++-=+|==+.+|. |-.+ .+|-|.+++.++.
T Consensus 173 NK-IvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVai----G~~~------G~ViifNlK~dki---- 236 (910)
T KOG1539|consen 173 NK-IVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAI----GLEN------GTVIIFNLKFDKI---- 236 (910)
T ss_pred ee-EEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEE----eccC------ceEEEEEcccCcE----
Confidence 44 6678999999999999999999999986 89999999997665555 6777 8888999999987
Q ss_pred eeEeeec-ccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcCCceEEEEecCCCCeeE
Q 016446 93 ALFESES-LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 93 ~l~~~~~-~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~g~~la~~~~~s~d~ti 167 (389)
|++..+ .+.+.+++|. .||. +||+|...|.+-+|||+.-+++..+. .+.|....|-||+-+..++ +.|+.+
T Consensus 237 -l~sFk~d~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta--~~DnSl 312 (910)
T KOG1539|consen 237 -LMSFKQDWGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA--GADNSL 312 (910)
T ss_pred -EEEEEccccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec--cCCCce
Confidence 444222 6788999998 7886 67888888999999998777765553 4678888898888766653 456777
Q ss_pred EEE--EcCCC--eEEEEEeecCCceeEEEEEecCC---------------------------------------------
Q 016446 168 KIL--SIEDG--TVLKVFYHLLHRNKKVDFIEQFN--------------------------------------------- 198 (389)
Q Consensus 168 klW--d~~tG--~~l~tl~~~~~~~~~v~f~~~~~--------------------------------------------- 198 (389)
|+| |...| +.|+.=.||..+-..+.|....+
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 777 43333 33443334444333333321000
Q ss_pred --------------------------------------------------------------------CeEEEEeCCCcE
Q 016446 199 --------------------------------------------------------------------EKLLVKQENENL 210 (389)
Q Consensus 199 --------------------------------------------------------------------~~l~~~s~D~tI 210 (389)
..-.+|+..|+|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 012345678999
Q ss_pred EEEECCCCeEEEEc---ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE------------------------
Q 016446 211 QILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV------------------------ 261 (389)
Q Consensus 211 klWd~~tg~~~~~l---~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l------------------------ 261 (389)
-++|+++|.....+ ..|..+|..++.-.-+++++|++ ||-+|.||+. ..++
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 99999999999998 58999999999999999999998 9999999976 4422
Q ss_pred -----------------EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 262 -----------------TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 262 -----------------~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.|.||++. |++..|||||++|+|+|.| ++||+||+.||+|+-.|.-
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasmD-----------~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASMD-----------STIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeecC-----------CcEEEEeccCcceeeeEec
Confidence 456688887 7999999999999999886 8999999999999988743
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC-CcEEEccC
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWSN 389 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D-~tIrlW~~ 389 (389)
- .+..+|.|||+|..||+...| .-|.||-|
T Consensus 617 d-----------------------------------~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 D-----------------------------------SPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred C-----------------------------------CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 2 488999999999999999999 78999976
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=227.78 Aligned_cols=280 Identities=13% Similarity=0.127 Sum_probs=226.6
Q ss_pred eeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.++.|.||. +.|.++|=.|.- .+++| |+.| .+++||++.+.++ ...|. .+.|.+..+.++ .
T Consensus 58 Fv~~L~gHr-dGV~~lakhp~~ls~~aS----Gs~D------G~VkiWnlsqR~~---~~~f~-AH~G~V~Gi~v~-~-- 119 (433)
T KOG0268|consen 58 FVGSLDGHR-DGVSCLAKHPNKLSTVAS----GSCD------GEVKIWNLSQREC---IRTFK-AHEGLVRGICVT-Q-- 119 (433)
T ss_pred chhhccccc-cccchhhcCcchhhhhhc----cccC------ceEEEEehhhhhh---hheee-cccCceeeEEec-c--
Confidence 456787875 999999999976 66777 6788 8999999988876 22232 456667889996 2
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEecC-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
....++++|+|||.|-+ .|.++.++.+ ..+..|.-+ -+..+|+++ ..|-|||.+--..+++|+--.+.+.+|
T Consensus 120 ~~~~tvgdDKtvK~wk~-~~~p~~tilg~s~~~gIdh~~~~~~FaTcG-----e~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKI-DGPPLHTILGKSVYLGIDHHRKNSVFATCG-----EQIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cceEEecCCcceeeeec-cCCcceeeeccccccccccccccccccccC-----ceeeecccccCCccceeecCCCceeEE
Confidence 56778999999999997 5668888885 467788877 577777653 369999998888999998667888999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCc
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHL 268 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~ 268 (389)
.|+|.....|+++..|+.|-|+|++++.+++-+. -....+.|+|+|++-.|++++ |..+-.+|+. -+.+....+|.
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence 9996555666667799999999999998866432 234567899999999999999 9999999996 67888999998
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 348 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
.. |.+|.|||-|+-+||||.| .+|||+.+..|..-... |+
T Consensus 273 sA-----V~dVdfsptG~EfvsgsyD-----------ksIRIf~~~~~~SRdiY--ht---------------------- 312 (433)
T KOG0268|consen 273 SA-----VMDVDFSPTGQEFVSGSYD-----------KSIRIFPVNHGHSRDIY--HT---------------------- 312 (433)
T ss_pred ee-----EEEeccCCCcchhcccccc-----------ceEEEeecCCCcchhhh--hH----------------------
Confidence 87 8999999999999999876 89999998755432222 22
Q ss_pred ccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 349 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 349 ~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.++ +.|.+|.||-|.++++|||.|+.||||.
T Consensus 313 -kRM--------q~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 -KRM--------QHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhh--------heeeEEEEeccccEEEecCCCcceeeee
Confidence 222 5899999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=207.10 Aligned_cols=272 Identities=15% Similarity=0.168 Sum_probs=220.5
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.+.+|-+- |+.|++.++|.+..+|-..+|+.|-+..||. ..||++..+-+-+.|++ |+.| .+++|||
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt-GavW~~Did~~s~~liT----GSAD------~t~kLWD 80 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT-GAVWCCDIDWDSKHLIT----GSAD------QTAKLWD 80 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC-ceEEEEEecCCcceeee----cccc------ceeEEEE
Confidence 46778887 9999999999999999877899999999985 99999999999999999 5677 8999999
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec-----CCCeEEEEeCC-------CCeEEEEec--CCcEEEEE
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLK-------NYTMLYSIS--DKHVQEIK 148 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-----~D~tiklWdl~-------~g~~l~tl~--~~~V~~va 148 (389)
+++|++ +++-.....+..|.|+ ++|.+++... .-+.|-+.|+. .-++++.+. ...+...-
T Consensus 81 v~tGk~-----la~~k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 81 VETGKQ-----LATWKTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred cCCCcE-----EEEeecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 999997 5554455566789998 8887766554 34689999987 344566665 46788888
Q ss_pred EcC-CceEEEEecCCCCeeEEEEEcCCCeEE-EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 149 ISP-GIMLLIFNRSSSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 149 fS~-g~~la~~~~~s~d~tiklWd~~tG~~l-~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
++| ++.|.++ ..|+.|..||+++|+.+ ..-+.|.+.+..++|+ ++..+++++|.|.|-||||+.+-++++++..
T Consensus 155 Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 155 WGPLGETIIAG---HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred ecccCCEEEEe---cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeee
Confidence 886 8888776 55689999999999655 4557899999999998 7889999999999999999999999999887
Q ss_pred CCCceEEEEEcCCCcEEEEEc--CC-eE------------EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 227 EFMTPSAFIFLYENQLFLTFR--NR-TV------------AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s--D~-tI------------klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
.. +|++.|++|-...++-++ +- -| |.+++- -|.+...+||=++ |++|||+|||+-.+|
T Consensus 231 e~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGksYsS 304 (327)
T KOG0643|consen 231 ER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKSYSS 304 (327)
T ss_pred cc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCccccc
Confidence 65 899999999777776664 21 11 122221 1346678899998 799999999999998
Q ss_pred EecCCCcccccCCCCCeEEEEeCC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|++ ||.|||--..
T Consensus 305 GGE-----------DG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGE-----------DGYVRLHHFD 317 (327)
T ss_pred CCC-----------CceEEEEEec
Confidence 755 5999997543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=214.22 Aligned_cols=288 Identities=13% Similarity=0.107 Sum_probs=220.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
|++.-+++|++ -++.+.+.|| .+.||-|+--.--..+.++ +.| ++++||.+..|++ |.
T Consensus 127 ivssFk~~t~~------~~lvre~~GH-kDGiW~Vaa~~tqpi~gtA----SAD------hTA~iWs~Esg~C-----L~ 184 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGH-KDGIWHVAADSTQPICGTA----SAD------HTARIWSLESGAC-----LA 184 (481)
T ss_pred heeeecCCcee------Eeehhhhccc-ccceeeehhhcCCcceeec----ccc------cceeEEeeccccc-----ee
Confidence 55666666643 2455667887 4999999987766666664 466 9999999999998 44
Q ss_pred e-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCC----CCeEEE-Eec-C-CcEEEEEEcC-CceEEEEecCCCCee
Q 016446 96 E-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLY-SIS-D-KHVQEIKISP-GIMLLIFNRSSSHVP 166 (389)
Q Consensus 96 ~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~----~g~~l~-tl~-~-~~V~~vafS~-g~~la~~~~~s~d~t 166 (389)
+ .++.|.+.+++|+ |.|.+++++|.|+|..+|... ..+... +-+ . +++ --|| ...-..++..++..|
T Consensus 185 ~Y~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~---e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE---EHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred eecccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh---hcccccccccccccccCCce
Confidence 3 5677778889998 899999999999999999832 111110 111 1 111 1121 111111111222256
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
|| ..|..|++|.+.|-...|. ..+++++++|+|.|..|||+++|++++.|.||....+-+.-.|..++++++
T Consensus 261 iR-------vPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IR-------VPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred ee-------eeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 65 4788999999999988987 457888889999999999999999999999999999999999999999999
Q ss_pred c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEe
Q 016446 247 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKI 322 (389)
Q Consensus 247 s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl 322 (389)
+ |-|.||||+. =.-+..|+||+.- |.++.|..|-+ ++|||.| .|||+||+.+-+ .++|+
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccc-----eeEEEEecCCc-eeecCCC-----------ceEEEeeeccccCcceee
Confidence 9 9999999996 3468899999986 89999988755 7887764 899999998743 57888
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+--+ +++.|+.|--+++||---.+..|||+|.
T Consensus 396 RtdS-----------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 396 RTDS-----------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCC-----------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 7543 7888999988889998888899999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=217.36 Aligned_cols=278 Identities=16% Similarity=0.212 Sum_probs=211.8
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC------------CcceeEee--eccc
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD------------SGFALFES--ESLK 101 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~------------~~~~l~~~--~~~~ 101 (389)
+..+..|+ -.+-+|+++||++.+.++|. + .+|-=|++.+|+-+ .+.++-.+ .|..
T Consensus 135 ~~~~~~H~-~s~~~vals~d~~~~fsask----~------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 135 FRVIGKHQ-LSVTSVALSPDDKRVFSASK----D------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred ceeecccc-CcceEEEeeccccceeecCC----C------cceeeeehhcCcccccccccchhhhhccCCCCcccccccc
Confidence 34455554 79999999999999999754 3 34444777777642 11111111 4556
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
++..+|.| |||++||+|+.|.-|.||+..+++.+++++ .+.|.+++|-. -..|.++ +.|.+||+|+++.-..+
T Consensus 204 eil~~avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 204 EILTLAVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYV 279 (479)
T ss_pred eeEEEEEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHH
Confidence 67789998 899999999999999999999999998876 46899999993 3334343 56789999999988888
Q ss_pred EEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
.+|-+|+..|..+..+. -++.++ |+.|+|+|||++ .-+...++.+|...+.+|+|=.+-. |+||| ||.|-||++
T Consensus 280 etlyGHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSL 355 (479)
T ss_pred HHHhCCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeee
Confidence 99999999999999863 466666 669999999999 5566667899999999999987776 56888 999999998
Q ss_pred C-CcEEEEec-cCcCCcCCC-------CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----eEEEEec
Q 016446 257 R-GELVTSFE-DHLLWHPDC-------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKIN 323 (389)
Q Consensus 257 ~-G~~l~tl~-gh~~~~~~~-------~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg----~~l~tl~ 323 (389)
. -+.+.+.. .|... ++. =|++||..|...++||||. +|.||||-+.+| +++..|.
T Consensus 356 ~KKkplf~~~~AHgv~-~~~~~~~~~~Witsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVI-PELDPVNGNFWITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred cccCceeEeecccccc-CCccccccccceeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc
Confidence 6 55554433 23211 110 1789999999999999876 499999999888 3344443
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
-- ..|++|+|+++|+.|+.|-
T Consensus 424 ~~-----------------------------------GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 LV-----------------------------------GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cc-----------------------------------cEEEEEEEccCCCEEEEec
Confidence 11 3899999999999776664
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=211.24 Aligned_cols=302 Identities=15% Similarity=0.221 Sum_probs=220.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+-+|+.|... +-+++++|-|+|.+||.+++|+||.+..||. ..|+||.|+|.|+.++++| -| .++.|
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~-GSVNsikfh~s~~L~lTaS----GD------~taHI 216 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT-GSVNSIKFHNSGLLLLTAS----GD------ETAHI 216 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc-cceeeEEeccccceEEEcc----CC------cchHH
Confidence 4567777776 6799999999999999999999999999985 9999999999999999965 44 45556
Q ss_pred eE------eccCCCCCcceeEeeecccCceeEEEecCCCeEEE-E-ecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc
Q 016446 81 EY------IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT-Y-SAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS 150 (389)
Q Consensus 81 ~~------i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La-s-~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS 150 (389)
|- ++...... .+.+ ...++-+..+.+.+- + -++..|||+ ++..|. ...|-+..+=
T Consensus 217 W~~av~~~vP~~~a~~-------~hSs-EeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPS-------DHSS-EEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWL 281 (481)
T ss_pred HHHhhcCcCCCCCCCC-------CCCc-hhhhhcccccccccccccccCCceeee-------eeeeeeccccceEehhhh
Confidence 65 22211100 0000 011222211111110 0 112235543 344444 4566666666
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-eEEEEcccC
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEVSRTE 227 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg-~~~~~l~gh 227 (389)
.|+++++++ -|.|..|||++||+.++.|.||.+...-+.-. | .++|+. +|.|-|.||||++.. ..+.+|.||
T Consensus 282 ~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstH-p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 282 AGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTH-P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred cCcceeeeee---ccccceeeeeccCceeccccCcchhccccccC-C-cceEEEEeccCceeEeccchhhcceeeeeccc
Confidence 677887764 45899999999999999999998877777665 3 556655 679999999999843 236789999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
++.|.++.|.-|.+ ++||+ |.|||+||+. ...+.|+.-... ++.|++|.-+.+||-- .|
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~------~NRvavs~g~~iIAiP-hD---------- 418 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSP------ANRVAVSKGHPIIAIP-HD---------- 418 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCc------cceeEeecCCceEEec-cC----------
Confidence 99999999998876 56788 9999999995 567888875433 6899999999999874 44
Q ss_pred CCeEEEEeCCCCeEEEEec-----CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC--CEEEE
Q 016446 305 AGSINVSSILTGKCLAKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NEIYT 377 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg--~~LaS 377 (389)
...|||+|+ +|+.+..|. ||. .-|.++||+.+- .-|.+
T Consensus 419 NRqvRlfDl-nG~RlaRlPrtsRqgHr----------------------------------RMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 419 NRQVRLFDL-NGNRLARLPRTSRQGHR----------------------------------RMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred CceEEEEec-CCCccccCCcccccccc----------------------------------eeeeeeeccccCccccccc
Confidence 378999996 588887775 454 689999998765 46889
Q ss_pred ecCCCcEEEcc
Q 016446 378 GNRHGLVHVWS 388 (389)
Q Consensus 378 gs~D~tIrlW~ 388 (389)
++.|..+-=|.
T Consensus 464 cGFDR~v~gW~ 474 (481)
T KOG0300|consen 464 CGFDRMVAGWK 474 (481)
T ss_pred ccccceeeeeE
Confidence 99999998886
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-27 Score=241.07 Aligned_cols=218 Identities=13% Similarity=0.226 Sum_probs=191.5
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
..++.+++|+.|..+-||....-.++.. +|...|.+|.|++ ..+||++ ..+++||+||++.++.+++|.+|...
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag---sasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG---SASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc---ccCCceeeeehhhhhhhhhhhccccC
Confidence 4578999999999999999876666654 4567899999994 5555543 45689999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
+.+|+|+ |.+.+.+.++.|..+++||.+..-|..+..+|...|..+.|+|||++++++. |.++||||+. |+++.+|+
T Consensus 115 ~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 115 ITSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred cceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9999998 7799998899999999999999999999999999999999999999999998 8999999996 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
+|... |.++.|.|..-.|++||. |+|||+||++|=+.+-......
T Consensus 194 ~~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~------------------- 238 (825)
T KOG0267|consen 194 SHEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPET------------------- 238 (825)
T ss_pred ccccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCcc-------------------
Confidence 99977 789999999999999865 5999999998777665554443
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
..|.+++|+|||+.+++|-.+.
T Consensus 239 ---------------~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 ---------------DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ---------------CCceeeeecCCceeeecCchhh
Confidence 5899999999999999997653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-22 Score=186.58 Aligned_cols=318 Identities=18% Similarity=0.301 Sum_probs=238.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccce-eeeeeecCCcceEEEEEE-eeCCCEEEEEEEeecCCCcceeeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFY-NKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-~l~tl~~~~~~~v~sv~~-spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
...|..+.|. +..++..+.|+.+++|+...+. .+..+.+.+...+..+.+ ++++..++... +..| ..+
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d------~~~ 136 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD------GTV 136 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC------ccE
Confidence 3467778887 8888889999999999997666 788888855337788888 88888333321 2336 678
Q ss_pred eEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc
Q 016446 79 KIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI 153 (389)
Q Consensus 79 ~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~ 153 (389)
++|++.. +.. ...+ ..+...+..++|+ |+++.+++++. |+++++|++.++..+.++. ...|.+++|+| +.
T Consensus 137 ~~~~~~~~~~~--~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 137 KLWDLSTPGKL--IRTL--EGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred EEEEecCCCeE--EEEE--ecCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 8888765 332 1111 2344445679998 89999999986 9999999998888887776 46899999995 55
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEE-EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCce
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTP 231 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~-tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v 231 (389)
.++++ .+.|++|++||..+++++. .+.+|.... -..|+ +++..+++++.|+++++||+..... +..+.+|...+
T Consensus 212 ~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 212 LLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred eEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 34333 4667899999999999999 688776664 33666 5666777789999999999997664 55557899999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec--cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~--gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
.++.|+|++..+++++ |+++++||.. +....... .|... |..+.|+|++..++.+.. .|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~d~~ 352 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS----------DDGT 352 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------CCCc
Confidence 9999999999999987 9999999987 66665555 77663 789999555466666532 3589
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE-ecCCCcEEE
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGLVHV 386 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS-gs~D~tIrl 386 (389)
+++|++...........+. .+..+.|++ ....++ ++.++.+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~ 396 (466)
T COG2319 353 IRLWDLRTGKPLKTLEGHS-----------------------------------NVLSVSFSP-DGRVVSSGSTDGTVRL 396 (466)
T ss_pred EEeeecCCCceeEEecCCc-----------------------------------eEEEEEECC-CCCEEEEecCCCceEE
Confidence 9999998877333333332 388999999 555555 789999999
Q ss_pred cc
Q 016446 387 WS 388 (389)
Q Consensus 387 W~ 388 (389)
|+
T Consensus 397 ~~ 398 (466)
T COG2319 397 WD 398 (466)
T ss_pred Ee
Confidence 97
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=199.18 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=231.0
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeee--cCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLN--VSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~--~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~ 77 (389)
-.+|.+|.+. |-.+|+++.|+++++|+++-++.+..++ +|+ +.|.-+.+.|- .+.++++| .| +.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~-~svdql~w~~~~~d~~atas----~d------k~ 88 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT-DSVDQLCWDPKHPDLFATAS----GD------KT 88 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC-cchhhheeCCCCCcceEEec----CC------ce
Confidence 4578888888 9999999999999999998776666543 443 67888888887 45777765 44 79
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceE
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIML 155 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~l 155 (389)
|++||++++|+. -..+..+-...+.++ |+|++++-++.|..|-.-|..+.+.+.+.+ .-.|..+.++ ++.++
T Consensus 89 ir~wd~r~~k~~-----~~i~~~~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 89 IRIWDIRSGKCT-----ARIETKGENINITWS-PDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred EEEEEeccCcEE-----EEeeccCcceEEEEc-CCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 999999999982 222333333458998 899999999999999999999988877776 3579999999 77766
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
..... -++|.|..-..=+.+++++-|......|.|. |+|.++|+|+.|..+-|||++.--|++.+.-|..+|+.+.
T Consensus 163 flt~G---lG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 163 FLTNG---LGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred EEecC---CceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence 55432 2699999988889999999998888999998 8999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
||.||++|||+| |.-|-|=+++ |+.+.... |.++ .++||+.|..-+||=++.|+-+++ .=+.|++||+-+
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWHPk~~LLAyA~ddk~~d~--~reag~vKiFG~ 310 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWHPKRPLLAYACDDKDGDS--NREAGTVKIFGL 310 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEecCCCceeeEEecCCCCcc--ccccceeEEecC
Confidence 999999999999 9999999997 99887775 4444 589999999999999888742111 001268888754
Q ss_pred C
Q 016446 314 L 314 (389)
Q Consensus 314 ~ 314 (389)
.
T Consensus 311 ~ 311 (313)
T KOG1407|consen 311 S 311 (313)
T ss_pred C
Confidence 3
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=223.52 Aligned_cols=227 Identities=16% Similarity=0.201 Sum_probs=169.6
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-E---EEec---CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L---YSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l---~tl~---~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t 174 (389)
+.+++|+ |.|..++|||.|.+||+||++.-.. + +.|. .+.|++++||+ |.+|++.+.. ..+||.| +.
T Consensus 170 Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqakl~D-Rd 244 (641)
T KOG0772|consen 170 VSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAKLLD-RD 244 (641)
T ss_pred EEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---cceeEEc-cC
Confidence 5678997 8999999999999999999864331 2 2232 57899999994 5544444322 4799999 56
Q ss_pred CeEEEEE-------------eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEc-----ccCCCceEEEE
Q 016446 175 GTVLKVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVS-----RTEFMTPSAFI 235 (389)
Q Consensus 175 G~~l~tl-------------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l-----~gh~~~v~sv~ 235 (389)
|..+..+ +||...+.+..|.|..-+.++++++|+|+||||+..- +-++++ .|-.-.|.+++
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 6666544 4677778899998555588999999999999999753 334443 33445789999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCCCcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFRGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
|+|||++||+|. ||.|++|+..+.. ...=..|... ..|.+|+||+||++|+|-+. |+++|+
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~tLKv 390 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDTLKV 390 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCceee
Confidence 999999999998 9999999974321 2233467653 23899999999999999766 489999
Q ss_pred EeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 311 SSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 311 Wd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
||+.+ .+||.+..|-... -+-+.++||||.+.|++|..
T Consensus 391 WDLrq~kkpL~~~tgL~t~--------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTP--------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeccccccchhhhcCCCcc--------------------------------CCCCccccCCCceEEEeccc
Confidence 99975 4566555443210 25567899999999999974
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=226.95 Aligned_cols=237 Identities=13% Similarity=0.155 Sum_probs=187.9
Q ss_pred eCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce-eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCC
Q 016446 54 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 131 (389)
Q Consensus 54 pdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~-l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~ 131 (389)
|.+++|.+ |+.| .+|++|++.+-.--+..+ +-. ..|..|+-.++.. -+|+.|+|+|.|-|||+|+..
T Consensus 35 ~~~ryLfT----gGRD------g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 35 PNGRYLFT----GGRD------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred CCCceEEe----cCCC------ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecc
Confidence 45777988 7788 888999874433211111 111 2355666777775 689999999999999999988
Q ss_pred CC--eEEEEec--CCcEEEEEE-cC-CceEEEEecCCCCeeEEEEEcCCC--eEEEEE--------e-ecCCceeEEEEE
Q 016446 132 NY--TMLYSIS--DKHVQEIKI-SP-GIMLLIFNRSSSHVPLKILSIEDG--TVLKVF--------Y-HLLHRNKKVDFI 194 (389)
Q Consensus 132 ~g--~~l~tl~--~~~V~~vaf-S~-g~~la~~~~~s~d~tiklWd~~tG--~~l~tl--------~-~~~~~~~~v~f~ 194 (389)
.+ -|+.++. .+.|.++|+ -+ ...+|+ ++-|+.|+|||+.+| ++++++ . |+-..+++++-+
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaS---gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS---GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEe---cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 66 4777774 578999999 45 445544 477899999999999 455544 2 555667777776
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 272 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~ 272 (389)
+.+-.+++|+-.+-||+||.++++.+..|+||++-|+.+..++||+.++|+| ||||||||+. .+|+.|+.-|...
T Consensus 181 -~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-- 257 (735)
T KOG0308|consen 181 -QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-- 257 (735)
T ss_pred -CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--
Confidence 4455677788999999999999999999999999999999999999999998 9999999996 8999999999875
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEE
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAK 321 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~t 321 (389)
||+++-+|+=+.+-||+. ||.|..=|+.+ .++...
T Consensus 258 ---VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 258 ---VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred ---eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEe
Confidence 899999999999999865 59999999887 444333
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=220.66 Aligned_cols=315 Identities=13% Similarity=0.117 Sum_probs=225.2
Q ss_pred cEEEEEee-----ccEEEEEecCceEEEEecccc---------------------eeee---------eee-cCCcceEE
Q 016446 5 KVIEIVAA-----RDIVFALAHSGVCAAFSRETN---------------------RRIC---------FLN-VSPDEVIR 48 (389)
Q Consensus 5 ~v~~i~~~-----~~~~a~~~~~gtiklW~~~tg---------------------~~l~---------tl~-~~~~~~v~ 48 (389)
.|++|-|+ .-+||++|.|.+||||++.-+ .++- ++. || .++|+
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH-eDWV~ 271 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH-EDWVY 271 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc-ccceE
Confidence 35566676 237899999999999996422 2332 233 65 59999
Q ss_pred EEEEeeCCCEEEEEEEeecCCCcceeeee------eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 49 SLFYNKNNDSLITVSVYASDNFSSLKCRS------TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 49 sv~~spdg~~l~s~s~~~~~d~~~l~~~~------~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
||-++|.+..|.|+|+ | .+|-+|. +.+-.++.|+.- +.. .| -++.-|+ ||+..+++-+.-
T Consensus 272 sv~W~p~~~~LLSASa----D-ksmiiW~pd~~tGiWv~~vRlGe~g-g~a------~G-F~g~lw~-~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASA----D-KSMIIWKPDENTGIWVDVVRLGEVG-GSA------GG-FWGGLWS-PNSNVIIAHGRT 337 (764)
T ss_pred EEEEccchhhheeccc----C-cceEEEecCCccceEEEEEEeeccc-ccc------cc-eeeEEEc-CCCCEEEEeccc
Confidence 9999999988999765 4 3333332 122234555541 111 11 1357787 899999999999
Q ss_pred CeEEEEeCC-CCeEEE----EecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcC----CCeEEEEEeecCCceeEEE
Q 016446 123 SIYKVFDLK-NYTMLY----SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE----DGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 123 ~tiklWdl~-~g~~l~----tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~----tG~~l~tl~~~~~~~~~v~ 192 (389)
|-.++|--+ ...... +.|-..|.+|++.| |.+|++. +.|+|-||+-.- +--++..-+-|++-..+++
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccceeeecccccccccceeee
Confidence 999999832 233222 22346899999996 8999875 677999997633 1124444456777789999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECC-------------------------------------------CCe----EEE---
Q 016446 193 FIEQFNEKLLVKQENENLQILDVR-------------------------------------------NAE----LME--- 222 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~-------------------------------------------tg~----~~~--- 222 (389)
|.+ .+-++++|.+.+-+|+++.- +|. |.+
T Consensus 415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 973 34455555566666776321 111 111
Q ss_pred --------------------------EcccCCCceEEEEEcCCCcEEEEEc-C-----CeEEEEeCC-CcEEEEeccCcC
Q 016446 223 --------------------------VSRTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 223 --------------------------~l~gh~~~v~sv~fspdg~~laS~s-D-----~tIklWd~~-G~~l~tl~gh~~ 269 (389)
-|-||...|++++.+|+|+++||+. - .-|+||+.. ...++.|++|+.
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 1248999999999999999999995 2 368999996 667778999987
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe----EEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK----CLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~----~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
- |..++|||||+||+|.|+| .|+.||..+.+. ..+.++.|+
T Consensus 574 T-----VT~l~FSpdg~~LLsvsRD-----------Rt~sl~~~~~~~~~e~~fa~~k~Ht------------------- 618 (764)
T KOG1063|consen 574 T-----VTRLAFSPDGRYLLSVSRD-----------RTVSLYEVQEDIKDEFRFACLKAHT------------------- 618 (764)
T ss_pred E-----EEEEEECCCCcEEEEeecC-----------ceEEeeeeecccchhhhhccccccc-------------------
Confidence 5 8999999999999999875 999999875432 123355665
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.-||++.|+||++.+||+|+|++|++|.
T Consensus 619 ---------------RIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 619 ---------------RIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ---------------eEEEEcccCcccceeEEecCCceEEEEe
Confidence 7899999999999999999999999996
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=202.17 Aligned_cols=297 Identities=13% Similarity=0.151 Sum_probs=213.1
Q ss_pred EEEEeccccee-----eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc-ceeEeee
Q 016446 25 CAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESE 98 (389)
Q Consensus 25 iklW~~~tg~~-----l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~-~~l~~~~ 98 (389)
.+-|+.++.+. +.+|.+| ...|.+++||.||++||+++ .| +.|+||+++.=.. .. +-+...-
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH-~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~-~eHr~~R~nv 130 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGH-KKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFEN-KEHRCIRQNV 130 (420)
T ss_pred hhhhcccCCCcccchhhhhhhcc-CCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhh-hhhhHhhccc
Confidence 55676655443 3467776 58999999999999999965 66 8999999854111 00 0022222
Q ss_pred cccCceeEEEecCCCe-EEEEecCCCeEEEEeCC---CCeEEEEe--------c---CCcEEEEEEc-CCceEEEEecCC
Q 016446 99 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLYSI--------S---DKHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~---~g~~l~tl--------~---~~~V~~vafS-~g~~la~~~~~s 162 (389)
..+||..|+|+ ||-+ ++++.-...+++++-+. +|..-+.+ + .-.|-++-+. .+.+|+++ +
T Consensus 131 e~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa---s 206 (420)
T KOG2096|consen 131 EYDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA---S 206 (420)
T ss_pred cCCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe---c
Confidence 45688999998 7876 45666677789998763 34432221 1 1245556666 46677765 4
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeE-----EEEcccCCCceEEE
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAEL-----MEVSRTEFMTPSAF 234 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~-----~~~l~gh~~~v~sv 234 (389)
.|.+|-||++. ||.|.++...+-.....+.+ |+|..+++++.---||+|.+- .|+. .-.|.||+..|.++
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred CCCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 56899999998 99999987554455556665 788888888999999999863 3432 33579999999999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-----Cc---EEEEecc--CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-----G~---~l~tl~g--h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+|||+.+.++|.| ||++||||.+ |+ +|++... |...- .=-.++.||.|+.||.++.
T Consensus 285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---~p~RL~lsP~g~~lA~s~g---------- 351 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---EPVRLELSPSGDSLAVSFG---------- 351 (420)
T ss_pred eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---CceEEEeCCCCcEEEeecC----------
Confidence 9999999999999 9999999964 22 3443310 11100 0137899999999998654
Q ss_pred CCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
.+++++..++|+-..++.. |. ..|.+++|+|||++|||++ |+
T Consensus 352 --s~l~~~~se~g~~~~~~e~~h~----------------------------------~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 352 --SDLKVFASEDGKDYPELEDIHS----------------------------------TTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred --CceEEEEcccCccchhHHHhhc----------------------------------CceeeEEecCCCcEEeeec-ce
Confidence 4899999999998777743 65 5899999999999999998 66
Q ss_pred cEEEccC
Q 016446 383 LVHVWSN 389 (389)
Q Consensus 383 tIrlW~~ 389 (389)
-+|+-.|
T Consensus 395 ~vrv~~n 401 (420)
T KOG2096|consen 395 YVRVIRN 401 (420)
T ss_pred eeeeecC
Confidence 6776543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=210.53 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=212.2
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeee-eec----------------CCcceEEEEEEeeCCCEEEEEE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNV----------------SPDEVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~t-l~~----------------~~~~~v~sv~~spdg~~l~s~s 63 (389)
+-.|..++++ +.++++++.+|+|--|+..+|+-.+. +.. .|...|-++|.||||++||+
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat-- 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT-- 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe--
Confidence 3467888888 77999999999999999999985511 111 24467899999999999999
Q ss_pred EeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C
Q 016446 64 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 141 (389)
Q Consensus 64 ~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~ 141 (389)
|+.| +.+-||+..+++..+ .|+ .+.+.|.+++|= ..-..|-|+|.|++||+|++..-..+-++. +
T Consensus 220 --gg~d------~~v~Iw~~~t~ehv~---~~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 220 --GGRD------RHVQIWDCDTLEHVK---VFK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred --cCCC------ceEEEecCcccchhh---ccc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 7888 888999999988632 343 566677889995 444578899999999999998777776764 5
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~ 221 (389)
..|.+|....-.++++. ++.|.|+|||++.. +....+.+|.+.+..|+|. +.+.+++||.||.|-||++...+++
T Consensus 287 d~v~~IdaL~reR~vtV--GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTV--GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred cceeeechhcccceEEe--ccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCce
Confidence 68999988866666555 46789999999954 6667788888899999996 4789999999999999999998876
Q ss_pred EEcc------------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C----cEEEEeccCcCCcCCCCeeEEEECC
Q 016446 222 EVSR------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 222 ~~l~------------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G----~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
-+.+ .|+.||++++..|...++|||+ +|-||||.++ | +++..|. -.++ |++++|++
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~f~~ 435 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLAFSN 435 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEEEcc
Confidence 5531 1234999999999999999999 9999999996 7 3555554 2233 89999999
Q ss_pred CCCEEEEEec
Q 016446 284 DQDLIISYCK 293 (389)
Q Consensus 284 dG~~laS~s~ 293 (389)
+|++|+.|..
T Consensus 436 sgk~ivagiG 445 (479)
T KOG0299|consen 436 SGKRIVAGIG 445 (479)
T ss_pred CCCEEEEecc
Confidence 9998887753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=201.49 Aligned_cols=224 Identities=14% Similarity=0.205 Sum_probs=178.0
Q ss_pred CCeEEEEecCCCeEEEEeCCC-C--eEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcCCCeE--EEEE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN-Y--TMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTV--LKVF 181 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~-g--~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~tG~~--l~tl 181 (389)
-|+.||+++.|++|||+.+.+ + +++.+|. .++||.|+|- | |.+||++ +-|+.|-||.-++|+- ++..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc---sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC---SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe---ecCceEEEEecCCCchhhhhhh
Confidence 499999999999999999864 3 4667775 4699999999 7 9999876 5668999999888753 3455
Q ss_pred eecCCceeEEEEEecCCCeE-EEEeCCCcEEEEECCCC--e-EEEEcccCCCceEEEEEcCC---C-----------cEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNA--E-LMEVSRTEFMTPSAFIFLYE---N-----------QLF 243 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg--~-~~~~l~gh~~~v~sv~fspd---g-----------~~l 243 (389)
..|...+++|+|.|..-+.+ +.++.||+|.|.+..+- - ..+....|.-.|++|.+.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 67888999999984433444 44789999999988753 2 24456789999999999886 6 679
Q ss_pred EEEc-CCeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCC----CCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 244 LTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+||+ |++||||+.+ + ++-++|++|.+| |+.||+.|. -.+|||+|.| |++-||-...
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~SqD-----------g~viIwt~~~ 242 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQD-----------GTVIIWTKDE 242 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecCC-----------CcEEEEEecC
Confidence 9998 9999999996 4 456789999999 789999996 4689998765 9999997541
Q ss_pred --CeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 --GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 --g~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++--.|| .... ..||.+.||+-|..||-++.|+.|.||.
T Consensus 243 e~e~wk~tll~~f~----------------------------------~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFP----------------------------------DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccCcccccccccCC----------------------------------cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1111111 1111 5899999999999999999999999995
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=189.25 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=193.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC------Ce-----E-E----EEec-CCcEEEEEEc-CCceEEEEec
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YT-----M-L----YSIS-DKHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~------g~-----~-l----~tl~-~~~V~~vafS-~g~~la~~~~ 160 (389)
-.-.+.+|+|. |+|.+-|-||..+|.|+-.... +- + . ++-| .+.|.++++| .|+.||++
T Consensus 31 dsqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg-- 107 (350)
T KOG0641|consen 31 DSQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG-- 107 (350)
T ss_pred chhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--
Confidence 33456789997 9999999999999999975321 11 0 1 1112 3589999999 58888875
Q ss_pred CCCCeeEEEEEcCCCeEE-----EEEeecCCceeEEEEEec--CCCeEEE-Ee-CCCcEEEEECCCCeEEEEcccCCCce
Q 016446 161 SSSHVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFIEQ--FNEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l-----~tl~~~~~~~~~v~f~~~--~~~~l~~-~s-~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
+.|+|||+--.....|- ..|.-|.+.++.++|... .++.|++ ++ .|..|.+=|..+|+.++.+.||++.|
T Consensus 108 -sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 -SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred -CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 67899999766544443 356778899999999732 2345555 33 89999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc--CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g--h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
-++ ++-+|-+++||+ |+|||.||+. ..|++++.. |........|.+|+..|.|++||||-.| .+
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-----------ss 254 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-----------SS 254 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-----------Cc
Confidence 988 889999999999 9999999998 889998863 2221111248999999999999998765 67
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
-.|+|+.-|+.++.+..|+ ..|.+|.|||--++|.++|.|..|||=
T Consensus 255 c~lydirg~r~iq~f~phs----------------------------------adir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHS----------------------------------ADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred eEEEEeeCCceeeeeCCCc----------------------------------cceeEEEeCCCceEEEEecccceEEEe
Confidence 8899999999999999998 689999999999999999999999985
Q ss_pred c
Q 016446 388 S 388 (389)
Q Consensus 388 ~ 388 (389)
|
T Consensus 301 d 301 (350)
T KOG0641|consen 301 D 301 (350)
T ss_pred e
Confidence 5
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-21 Score=183.12 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=216.4
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC-CCCcceeEeeecccCceeEEE-ecCCCe-E
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEF-DDVNGK-V 115 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~-~~~~~~l~~~~~~~~~~~v~F-s~pdG~-~ 115 (389)
+..+ ...+.++.|.+.+..++.. +.| ..+.+|+...+. . ...+.. .....+..+.+ + +++. +
T Consensus 61 ~~~~-~~~i~~~~~~~~~~~~~~~----~~d------~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~ 125 (466)
T COG2319 61 LRGH-EDSITSIAFSPDGELLLSG----SSD------GTIKLWDLDNGEKL--IKSLEG-LHDSSVSKLALSS-PDGNSI 125 (466)
T ss_pred eeec-cceEEEEEECCCCcEEEEe----cCC------CcEEEEEcCCCcee--EEEEec-cCCCceeeEEEEC-CCcceE
Confidence 3444 5899999999999988884 456 788889887765 2 111111 11112334444 6 7787 6
Q ss_pred EEEecC-CCeEEEEeCCC-CeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeE
Q 016446 116 LTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 190 (389)
Q Consensus 116 Las~s~-D~tiklWdl~~-g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~ 190 (389)
++..+. |+++++||+.. +.....+. ...|..++|+| +..+++++. .|+++++|++.++..+.++.+|...+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeeccCCCceEE
Confidence 666555 99999999987 56655554 57899999995 556665422 4799999999999999999999999999
Q ss_pred EEEEecCCCeEEEE-eCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc-EEEEec
Q 016446 191 VDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LVTSFE 265 (389)
Q Consensus 191 v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~-~l~tl~ 265 (389)
++|+ |++..++++ +.|++|++||...++++. .+.+|...+ --.|+|++.++++++ |+++++|+.. .. ++..+.
T Consensus 204 ~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 9999 667645555 899999999999999998 799999886 448999999898888 9999999996 33 366667
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec--CCCCCCCcccccCCCCCCCc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~--gH~~~~~~~~~~~~~~~~~~ 343 (389)
+|..+ |.++.|+|++..+++++. |+++++||+.++....... +|.
T Consensus 282 ~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~----------------- 328 (466)
T COG2319 282 GHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLTLKGHE----------------- 328 (466)
T ss_pred cCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEeeecccC-----------------
Confidence 78655 799999999999999665 4789999999988877776 776
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEe-cCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg-s~D~tIrlW~ 388 (389)
..|..+.|+|++..++.+ ..|+.+++|+
T Consensus 329 -----------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 329 -----------------GPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred -----------------CceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 368899995554556666 7889999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=219.47 Aligned_cols=244 Identities=13% Similarity=0.114 Sum_probs=190.0
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc--------CC---------------C-------
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GK---------------P------- 88 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~--------g~---------------~------- 88 (389)
++..|.+.||++-|||||++||+ ++.| ..|+||-|.. +. +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAs----aGeD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLAS----AGED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeee----cCCC------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 45356799999999999999999 6788 8888888755 00 0
Q ss_pred ------C-------------CcceeEe-------eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C
Q 016446 89 ------D-------------SGFALFE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 141 (389)
Q Consensus 89 ------~-------------~~~~l~~-------~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~ 141 (389)
. .....|. .+|.+-|..+++| . .++|.|+|-|+|||||++..-+||.+|. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-K-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-K-NNFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-c-CCeeEeccccccEEeecCCCcceeeEEecC
Confidence 0 0000111 1245556678998 4 5699999999999999999888999997 5
Q ss_pred CcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 016446 142 KHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 219 (389)
Q Consensus 142 ~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~ 219 (389)
+.|.+|+|+ |+.+++++ +-|+.||||++..-+...-..-+ .-|.+|.|. |+|+..++|+.+|.+++|+...-+
T Consensus 410 dfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehhhh-hhheeEEec-cCCceEEEEEeccEEEEEEccCCe
Confidence 789999999 48888876 56689999999887666544333 778999998 789999999999999999997666
Q ss_pred EEEEcc---------cCCCceEEEEEcCCC--cEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 220 LMEVSR---------TEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 220 ~~~~l~---------gh~~~v~sv~fspdg--~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
+..... .|. .|+.+-|.|.. ++|+|..|..|||+|.. -+++..|+|+..... =.+..|++||++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKH 560 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCE
Confidence 544321 133 79999997644 48888889999999996 788889998876421 257899999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|+|+|+| .-|.||+..
T Consensus 561 IVs~seD-----------s~VYiW~~~ 576 (712)
T KOG0283|consen 561 IVSASED-----------SWVYIWKND 576 (712)
T ss_pred EEEeecC-----------ceEEEEeCC
Confidence 9999865 799999973
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=223.83 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=197.0
Q ss_pred ceeEEEecCCCeEEEEec--CCCeEEEEeCCC-C-----------eEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCe
Q 016446 103 PGFVEFDDVNGKVLTYSA--QDSIYKVFDLKN-Y-----------TMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHV 165 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~-g-----------~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~ 165 (389)
|++|..+ |||..+|+|+ .|+.+++|+... . +++.+. |...|.+|+|| ||++||++ ++|+
T Consensus 16 IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG---SDD~ 91 (942)
T KOG0973|consen 16 IFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG---SDDR 91 (942)
T ss_pred EEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec---cCcc
Confidence 5679997 9999999999 899999998642 1 111222 23689999999 79999876 5678
Q ss_pred eEEEEEcCC------------------CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 166 PLKILSIED------------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 166 tiklWd~~t------------------G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
-|.+|.-.. -++..+|.+|..-|..|+++ |++.+++++|.|++|-|||.++.++++++++|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccccceeeeeeecc
Confidence 999999762 13788999999999999998 68889999999999999999999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCC-CCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~-~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...|-.|+|-|-|++|||=+ |+|||+|+.. -.+.++..++-...+. .....+.+||||++||+.-. +-+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-------~n~~ 243 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-------VNGG 243 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh-------ccCC
Confidence 99999999999999999999 9999999974 6666666655431111 13578899999999999742 3344
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCC-----CC------
Q 016446 305 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-----RN------ 373 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd-----g~------ 373 (389)
-.+|.|-+=.+=++-..|-||+ .+|..|+|+|- -+
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~----------------------------------~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHS----------------------------------APVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred cceeEEEecCCceeeeeeecCC----------------------------------CceEEEEeChHHhccccccCCccC
Confidence 5689998876667788899998 59999999982 12
Q ss_pred ------EEEEecCCCcEEEcc
Q 016446 374 ------EIYTGNRHGLVHVWS 388 (389)
Q Consensus 374 ------~LaSgs~D~tIrlW~ 388 (389)
++|+||.|++|-||.
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred CCcceEEEEEecCCccEEEEe
Confidence 799999999999995
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-23 Score=206.13 Aligned_cols=289 Identities=15% Similarity=0.205 Sum_probs=215.6
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe---eecccCceeEEEecCCCe
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~---~~~~~~~~~v~Fs~pdG~ 114 (389)
+|.+| ...|-++++-|.|-.++| |+.| .++++||.+--.. ..+-|. ..-...+.+++|| |.|.
T Consensus 162 ~l~hg-tk~Vsal~~Dp~GaR~~s----Gs~D------y~v~~wDf~gMda--s~~~fr~l~P~E~h~i~sl~ys-~Tg~ 227 (641)
T KOG0772|consen 162 QLKHG-TKIVSALAVDPSGARFVS----GSLD------YTVKFWDFQGMDA--SMRSFRQLQPCETHQINSLQYS-VTGD 227 (641)
T ss_pred eccCC-ceEEEEeeecCCCceeee----cccc------ceEEEEecccccc--cchhhhccCcccccccceeeec-CCCC
Confidence 56655 589999999999999999 7899 9999999742222 111122 1122236789998 8888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEe-c------------C--CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe-
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSI-S------------D--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT- 176 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl-~------------~--~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~- 176 (389)
+|+..+....+||.|- .|..+..+ + + ..+.+..|.| -+.++++ +.|+|+||||+..-+
T Consensus 228 ~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~---s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC---SYDGTLRIWDVNNTKS 303 (641)
T ss_pred eEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe---cCCCcEEEEecCCchh
Confidence 8777788889999995 66655433 1 1 3678888996 3444454 667999999998533
Q ss_pred EEEEEe---ecCC--ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEcccCCC--ceEEEEEcCCCcEEEEE
Q 016446 177 VLKVFY---HLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFM--TPSAFIFLYENQLFLTF 246 (389)
Q Consensus 177 ~l~tl~---~~~~--~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~--~v~sv~fspdg~~laS~ 246 (389)
-++.++ .... .+.+++|+ +++..||+++.||.|++|+..+.. ...+-..|.. .|.+|+||+||++|+|=
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred heeEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 233333 1122 34889998 788888899999999999974422 1333367887 99999999999999999
Q ss_pred c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 247 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 247 s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ |+++|+||++ .++|.+.+|-..+-+ -..++||||.++|++|..-. -+..-+++-++|-.|=+.++++.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~-----~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAP-----NGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEeccccc-----CCCCCceEEEEeccceeeEEEec
Confidence 9 9999999994 789988887665433 26789999999999986421 12234789999988888888876
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
--+ ..|..+.|+|-=+.|..|+.||+++++
T Consensus 455 i~~----------------------------------aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 455 IST----------------------------------ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCC----------------------------------ceEEEEeecchhhheeeecCCCceEEE
Confidence 543 478899999999999999999999986
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-25 Score=229.75 Aligned_cols=219 Identities=12% Similarity=0.224 Sum_probs=183.6
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
+.+++....+-.+|+||... +..|...|.++.+- -+..++. ++.|..+-||.+.---++..|.+|..+|.+|
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~---Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVT---GGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh----hhhhhhhhceeeeeccceeecc---CCCceeeccccccCCchhheeeccCCcceee
Confidence 34455555566778888532 12233445555543 3444544 3566788899987777888899999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
.|. ++...|++|+.|||||+||++.++.+++|.||...+.+|.|+|-|.++|+++ |.-+++||.. --|..++.+|..
T Consensus 77 ~f~-~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFD-TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecC-cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 998 4566777788999999999999999999999999999999999999999999 9999999997 779999999875
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. |..++|+|||+++++|++ |.++||||+..|+.+.++++|+
T Consensus 156 v-----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e----------------------- 196 (825)
T KOG0267|consen 156 V-----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHE----------------------- 196 (825)
T ss_pred e-----eEEEeecCCCceeeccCC-----------cceeeeeccccccccccccccc-----------------------
Confidence 4 899999999999999865 4899999999999999999999
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+|.|+|-.-.|++||.|++||+||.
T Consensus 197 -----------~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 197 -----------GKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------ccccccccCchhhhhccCCCCceeeeecc
Confidence 48999999999999999999999999984
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=203.77 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=195.5
Q ss_pred eeEEEecCCC--eEEEEecCCCeEEEEeCCCCeEEEEecCC--cEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEE
Q 016446 104 GFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 179 (389)
Q Consensus 104 ~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~~l~tl~~~--~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~ 179 (389)
+..+|. +.. ..+.+|+.|+++-+.|-..++.+.+++++ .|.+|.|+|....+.. ++.|..||+|.+.+-.+..
T Consensus 221 gi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~--aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 221 GITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT--ASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee--cCCcceEEeeccccccCcc
Confidence 345665 444 68899999999999999899988888764 7999999965544443 4667899999999988888
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
...-|...|..+... |.++++++++.|+++-.-|+++|.++..... ..-.+.+.+|+|||-+|++|. |+.|||||+
T Consensus 298 ~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 888888999999987 7899999999999999999999998776433 234589999999999999998 999999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
. +.-+..|.||.++ |.+|+||.+|-|||+++.| +.|||||++--+..+++.-.+.
T Consensus 377 ks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~add-----------~~V~lwDLRKl~n~kt~~l~~~-------- 432 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGP-----VKAISFSENGYWLATAADD-----------GSVKLWDLRKLKNFKTIQLDEK-------- 432 (506)
T ss_pred CCccccccCCCCCCc-----eeEEEeccCceEEEEEecC-----------CeEEEEEehhhcccceeecccc--------
Confidence 6 8889999999998 8999999999999999875 7899999987676777654431
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
..|.++.|++-|++|+.++.|=+|.+.
T Consensus 433 -------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 433 -------------------------KEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred -------------------------ccceeEEEcCCCCeEEeecceeEEEEE
Confidence 479999999999999999988777654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=207.06 Aligned_cols=265 Identities=16% Similarity=0.216 Sum_probs=200.0
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-++|+++.||.|||||+.+-+|+.++..|. ++|+.|.+.. ...++ .++| ++++.|-+. |.+. ..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-G~V~Gi~v~~--~~~~t----vgdD------KtvK~wk~~-~~p~--~t 143 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHE-GLVRGICVTQ--TSFFT----VGDD------KTVKQWKID-GPPL--HT 143 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeeccc-CceeeEEecc--cceEE----ecCC------cceeeeecc-CCcc--ee
Confidence 368999999999999999889999999875 8999999988 54566 3588 777777743 3331 11
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCC--ceEEEEecCCCCeeEE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLK 168 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g--~~la~~~~~s~d~tik 168 (389)
... .... .+.-. --+...|++++ .|-|||..--.++.++. .+.|.+|.|+|. ..||++ ..|+.|-
T Consensus 144 ilg~s~~~----gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIv 213 (433)
T KOG0268|consen 144 ILGKSVYL----GIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIV 213 (433)
T ss_pred eecccccc----ccccc-cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee---ccCCceE
Confidence 111 1111 12222 22456777774 69999997777887776 578999999984 455554 4568999
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
|+|+.+++.|+.+.- .-..+.|+|+ |..-.+.++++|..+-.+|++. .++++...+|...|.+|.|||.|+-|+|||
T Consensus 214 LyD~R~~~Pl~KVi~-~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL-TMRTNTICWN-PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEecccCCccceeee-eccccceecC-ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 999999999987762 3566899999 4667788899999999999986 456888999999999999999999999999
Q ss_pred -CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 248 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 248 -D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|.+|||+.++ |.---+. |.-.- ..|.+|.||-|.||++|||.| +.||||-...-+-+..
T Consensus 292 yDksIRIf~~~~~~SRdiY--htkRM--q~V~~Vk~S~Dskyi~SGSdd-----------~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIY--HTKRM--QHVFCVKYSMDSKYIISGSDD-----------GNVRLWKAKASEKLGV 352 (433)
T ss_pred ccceEEEeecCCCcchhhh--hHhhh--heeeEEEEeccccEEEecCCC-----------cceeeeecchhhhcCC
Confidence 9999999996 5422111 11110 128999999999999998764 9999998654444433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=199.62 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=219.5
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..+.++...|--..+.+ |+.| ..+-+.|.+.++.. .+|. ++..-+.+|.|+ |+...++++|.|..
T Consensus 220 pgi~ald~~~s~~~ilT----GG~d------~~av~~d~~s~q~l---~~~~-Gh~kki~~v~~~-~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILT----GGED------KTAVLFDKPSNQIL---ATLK-GHTKKITSVKFH-KDLDTVITASADEI 284 (506)
T ss_pred CCeeEEeecCCCCccee----cCCC------CceEEEecchhhhh---hhcc-CcceEEEEEEec-cchhheeecCCcce
Confidence 45788888887555666 7788 78888887777652 2332 233335679997 89999999999999
Q ss_pred EEEEeCCCCeEEEEe--cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC--ceeEEEEEecCCC
Q 016446 125 YKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNE 199 (389)
Q Consensus 125 iklWdl~~g~~l~tl--~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~--~~~~v~f~~~~~~ 199 (389)
||+|.+....+.... |...|+.+...| |.+|+++ +.|++.-.-|+++|.++..-..-.. ...+.+|+ |||-
T Consensus 285 i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgL 360 (506)
T KOG0289|consen 285 IRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGL 360 (506)
T ss_pred EEeeccccccCccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCce
Confidence 999998766654333 568999999995 9999876 5678999999999999987763222 25888998 6776
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCee
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 277 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~ 277 (389)
.+.+|..|+.+|+||++++..+..|.||+..|.+|+|+.+|=+||++. |+.||+||++ -+.++++.-.... .|.
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~ 436 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVN 436 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cce
Confidence 777788999999999999999999999999999999999999999999 8889999998 7777777644332 279
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC--CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~--tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
++.|.+.|+||+.++.| =+|.+.+-. +=+|+..+.-|.
T Consensus 437 s~~fD~SGt~L~~~g~~-----------l~Vy~~~k~~k~W~~~~~~~~~s----------------------------- 476 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSD-----------LQVYICKKKTKSWTEIKELADHS----------------------------- 476 (506)
T ss_pred eEEEcCCCCeEEeecce-----------eEEEEEecccccceeeehhhhcc-----------------------------
Confidence 99999999999998643 445444422 445777777776
Q ss_pred cccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
...+.|.|..+-+.|+++|.|...||..
T Consensus 477 -----g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 477 -----GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred -----cccceeeecccceEEeeccchhheEEee
Confidence 4788999999999999999999998853
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=208.64 Aligned_cols=322 Identities=14% Similarity=0.171 Sum_probs=229.4
Q ss_pred EEEEeeccEEEEEecCceEEEEecccce--eeeeeecCCcceE-EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 7 IEIVAARDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVI-RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 7 ~~i~~~~~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v-~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
..|...-....+.+-|+++.+|+.++-+ |+..++......+ -++++.|+.++.+.+ -|+.+ ..+.|..-
T Consensus 105 ~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla--~Ggs~------~~v~~~s~ 176 (764)
T KOG1063|consen 105 VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA--CGGSK------FVVDLYSS 176 (764)
T ss_pred EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE--ecCcc------eEEEEecc
Confidence 3444444445555789999999997666 6667776654443 378888876655553 37777 66666553
Q ss_pred ccCCCCCcceeEe-eecccCceeEEEecCCC--eEEEEecCCCeEEEEeCCCCe---------------------EEEE-
Q 016446 84 RRGKPDSGFALFE-SESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYT---------------------MLYS- 138 (389)
Q Consensus 84 ~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~---------------------~l~t- 138 (389)
..+++ +.+-. .+|..||.+++|..+-| -+|||+|+|..||||.+.-+. ++.+
T Consensus 177 ~~d~f---~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 177 SADSF---ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred CCcce---eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 33332 22222 34777889999985544 589999999999999874222 1111
Q ss_pred -----------ecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEEEE-----EeecCCceeEEEEEecCCC
Q 016446 139 -----------ISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVLKV-----FYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 139 -----------l~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l~t-----l~~~~~~~~~v~f~~~~~~ 199 (389)
.|.+||.+|-++ ++..|+++ +.|+++-+|...+ |-=+-+ +.|..+..+...|+ |++.
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSA---SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~-~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSA---SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS-PNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheec---ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc-CCCC
Confidence 134799999999 57577665 6679999997543 332222 22333456888998 6677
Q ss_pred eEEEEeCCCcEEEEE-CCCCeEEE--EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC---------------C--
Q 016446 200 KLLVKQENENLQILD-VRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---------------G-- 258 (389)
Q Consensus 200 ~l~~~s~D~tIklWd-~~tg~~~~--~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~---------------G-- 258 (389)
.+++-+.-|-.++|- .+.+.+.+ ...||.+.|..|+|.|.|++|+|.+ |+|-||.-.- |
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 788889999999998 33344433 4689999999999999999999999 9999986211 1
Q ss_pred -cEE------------------EEec------------------------------------------------------
Q 016446 259 -ELV------------------TSFE------------------------------------------------------ 265 (389)
Q Consensus 259 -~~l------------------~tl~------------------------------------------------------ 265 (389)
+|+ +.|+
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 111 1111
Q ss_pred ---------------------------------cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 266 ---------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 266 ---------------------------------gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
||.. .|.+++.||+|++|||+|..+. -+---|+||+
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-----Ev~~l~~s~~gnliASaCKS~~------~ehAvI~lw~ 558 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-----EVYALAISPTGNLIASACKSSL------KEHAVIRLWN 558 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCce-----eEEEEEecCCCCEEeehhhhCC------ccceEEEEEe
Confidence 1221 5899999999999999997531 1224699999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+-..++.|.+|+ -.|+.++|||||++|+|.|+|+++.||.
T Consensus 559 t~~W~~~~~L~~Hs----------------------------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 559 TANWLQVQELEGHS----------------------------------LTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccchhhhheecccc----------------------------------eEEEEEEECCCCcEEEEeecCceEEeee
Confidence 98888888999999 4899999999999999999999999995
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=193.74 Aligned_cols=234 Identities=13% Similarity=0.153 Sum_probs=187.1
Q ss_pred eEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCc--eEEEEecCCCCeeE
Q 016446 94 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGI--MLLIFNRSSSHVPL 167 (389)
Q Consensus 94 l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~--~la~~~~~s~d~ti 167 (389)
+|. +.|.+.+.+||-+ |.++||||.|.||+|+|+..-..+..+ |.+.|.++.|. |-. .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 666 4577777888875 899999999999999999888777666 36789999999 532 66665 567899
Q ss_pred EEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcc-cCCCceEEEEEcCCCcEEEE
Q 016446 168 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 168 klWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~-gh~~~v~sv~fspdg~~laS 245 (389)
-+|++...+++++|+.|.+.|..++.. |. ++||. -+.|+.+|+||+-+|+.-..++ .|.. ..|.|+|.|.+++-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIH-PS-GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEec-CC-CceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEE
Confidence 999999999999999999999999998 44 45555 5899999999999988533322 2332 34999999999998
Q ss_pred EcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 246 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 246 ~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.-..|-+|.++ ..+...++...- +.++-|- ++.+|+.|.. |+.|++||...+.++..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 887778899997 677766654321 2344442 6777777755 48999999988999999999
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE--ECCCCCEEEEecCCCcEEEccC
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva--fSpdg~~LaSgs~D~tIrlW~~ 389 (389)
|+ ++|-+++ -.|++.+|+|+|.||.|++||.
T Consensus 248 H~----------------------------------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HE----------------------------------NRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ch----------------------------------hheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99 4777776 4789999999999999999984
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=200.58 Aligned_cols=265 Identities=12% Similarity=0.140 Sum_probs=194.5
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--------cCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--------RGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--------~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
|.+-|+.+.+-|....||.+ ++.. ..+.|||.. .|++..-.+|..|+.-+ ++++|++-.--
T Consensus 123 h~gEVnRaRymPQnp~iVAt---~t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~~~g 191 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVAT---KTSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQQEG 191 (422)
T ss_pred CCccchhhhhCCCCCcEEEe---cCCC------CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccccce
Confidence 45789999999999877763 4444 778899872 22333333566655433 45788743444
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
.|++++.|++|.+||++.+..- + ..+ .....+.+|...|..|+|.
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~---------------~------------~~~--------~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKE---------------D------------KVV--------DPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred eEeeccCCCcEEEEeccccccC---------------C------------ccc--------cceEEeecCCcceehhhcc
Confidence 7888999999999998432210 0 011 2234566888999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEECC--CCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCc
Q 016446 195 EQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHL 268 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~--tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~ 268 (389)
+.+.+.+++.++|+.+.|||.+ +-++.+...+|...|++++|+| ++.+|||+| |+||+|||++ -+++.+|++|.
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE 316 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence 6666777778999999999999 5667788899999999999998 667888998 9999999996 67999999999
Q ss_pred CCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 269 LWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.. |..|.|||+-. .|||++ .|+.+.+||+..=...++ -+ ...+
T Consensus 317 de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~---~e-----------------da~d 360 (422)
T KOG0264|consen 317 DE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQS---PE-----------------DAED 360 (422)
T ss_pred cc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccC---hh-----------------hhcc
Confidence 86 89999999754 556654 569999999863111111 01 1112
Q ss_pred cccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~~ 389 (389)
.-.++.=+.+||...|....|+|+.. +|+|.++|+.+.||+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 23444455667778999999999885 7899999999999973
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=192.22 Aligned_cols=269 Identities=16% Similarity=0.110 Sum_probs=199.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EE--EEe---------c----CCcEEEEEEc--CCceEEEEe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML--YSI---------S----DKHVQEIKIS--PGIMLLIFN 159 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l--~tl---------~----~~~V~~vafS--~g~~la~~~ 159 (389)
|.|.+.++...+..|++++||+.||.|-|||+++-. .. +++ | ...|.++.+= |.+++.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts-- 119 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS-- 119 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec--
Confidence 445566777777789999999999999999997543 10 111 1 1357776666 4666644
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC-CeE-EEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l-~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
.+.|+|+|+||+.|-|...+|+- .+.|++-+.+|..- ..| |+|-.|-.|||=|+++|.+-++|.||.+.|.+|.|+
T Consensus 120 -sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 -SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred -ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 46789999999999999888873 36677777764332 344 446699999999999999999999999999999999
Q ss_pred CCCcE-EEEEc-CCeEEEEeCC--CcEEEEeccCcC---------CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 238 YENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 238 pdg~~-laS~s-D~tIklWd~~--G~~l~tl~gh~~---------~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
|-.++ ||||+ ||+||+||+. .-|+++|..|+. ..-...|+++||+.||.+|++.+.|
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd---------- 267 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD---------- 267 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc----------
Confidence 98886 56778 9999999996 468888988872 1112358999999999999998765
Q ss_pred CCeEEEEeCCCCeEEEEe-----------------cCCCCCCCcccccCCCCCCCcccccc--ccceecccccccCCEEE
Q 016446 305 AGSINVSSILTGKCLAKI-----------------NATNCSPKVDDELGSSSTGKSKKLNK--SSYIRSTVGEALEDITS 365 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl-----------------~gH~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~V~s 365 (389)
..+|+|+...|+-.-.- .+|. .+.++++-+++.+-..+-. -.+++++ |+..|.+
T Consensus 268 -~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s---~vfv~~p~~~~lall~~~sgs~ir~l~~---h~k~i~c 340 (397)
T KOG4283|consen 268 -DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDS---DVFVLFPNDGSLALLNLLEGSFVRRLST---HLKRINC 340 (397)
T ss_pred -cceEEeecccCcccccccccccccccccceEEEeeccc---ceEEEEecCCeEEEEEccCceEEEeeec---ccceeeE
Confidence 78999999887631110 1222 3445555555444333333 2444444 4689999
Q ss_pred EEECCCCCEEEEecCCCcEEEcc
Q 016446 366 LFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 366 vafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|-||=+.+.+|+.|+.|--|-
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EeecCchhhhhccccCCcccccc
Confidence 99999999999999999998873
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=187.92 Aligned_cols=276 Identities=14% Similarity=0.090 Sum_probs=210.9
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
.+....++.|-+|+|||.-+.++.+ ++.| .++|+|++.. |.+.. ... +++-+-+..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A---~SWD------~tVR~wevq~~g~~~~-ka~--~~~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAA---GSWD------GTVRIWEVQNSGQLVP-KAQ--QSHDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEe---cccC------CceEEEEEecCCcccc-hhh--hccCCCeEEEEEc-cCCceE
Confidence 4556667899999999965555554 5788 8999999965 66532 111 3455667889998 899999
Q ss_pred EEecCCCeEEEEeCCCCeEEEE-ecCCcEEEEEEcCC---ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~t-l~~~~V~~vafS~g---~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~ 192 (389)
++|+-|+++|+|||.+++.... .|...|..+.|=++ +.|+++ |-|+|||.||++.-+.+.++.- ..+++...
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~L-PeRvYa~D 163 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQL-PERVYAAD 163 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeeec-cceeeehh
Confidence 9999999999999999986644 46789999999842 356765 5669999999999999988872 35665555
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEE--EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C--cEEEEecc
Q 016446 193 FIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--ELVTSFED 266 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G--~~l~tl~g 266 (389)
.. ...++.+-.|+.|.+++++.+.... .-..-..++++|+.-+|++..|-|+ .|.+-|-.++ + +---+|+-
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 43 3466668899999999998765321 1122345789999999999999999 9999999996 6 33446666
Q ss_pred CcCC--cC--CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 267 HLLW--HP--DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 267 h~~~--~~--~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
|-.. +. -..|++|+|.|.-.+||+++. ||++..||-...+-|.+.+.|.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~---------------- 293 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHP---------------- 293 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCC----------------
Confidence 6531 11 134899999999999999754 6999999976666666666676
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
++|++.+|+.+|.++|=+
T Consensus 294 ------------------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 ------------------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ------------------CccceeEecCCCCEEEEE
Confidence 799999999999988754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=205.59 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=225.6
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
.+++|+ |.+.|-.+++|.+.+.+-+ |+. +.|++|||.. |.-.....|=-...-.+++++... |||
T Consensus 412 q~~tL~--HGEvVcAvtIS~~trhVyT----gGk-------gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdg 477 (705)
T KOG0639|consen 412 QINTLA--HGEVVCAVTISNPTRHVYT----GGK-------GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDG 477 (705)
T ss_pred hhhhhc--cCcEEEEEEecCCcceeEe----cCC-------CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCC
Confidence 455666 3489999999999998887 555 6899999833 322111111112234467788887 899
Q ss_pred eEEEEecCCCeEEEEeCCCCeEE--EEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTML--YSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l--~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
+.|..|+.-.|+-||||....+. ..|. +-...++|+||+..++-+ +-.|+.|++||+++-.+++.|+||++...
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs--ccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS--CCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee--eccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999999999999877653 2333 346789999976666544 23468999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC--CceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEecc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 266 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~--~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~g 266 (389)
+|..+ .+|.+|=+|+-|.|||.||+++|+.++. |. .+|.++-..|++..||.|- .+.+.|-..+|....-|.-
T Consensus 556 cIdis-~dGtklWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl 631 (705)
T KOG0639|consen 556 CIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL 631 (705)
T ss_pred eEEec-CCCceeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc
Confidence 99998 7899999999999999999999887653 43 4788999999999999997 8899888888776666655
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|..- |.++.|++-||+.||.+.| +-+..|...-|..+...+.-
T Consensus 632 heSc-----VLSlKFa~cGkwfvStGkD-----------nlLnawrtPyGasiFqskE~--------------------- 674 (705)
T KOG0639|consen 632 HESC-----VLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSKES--------------------- 674 (705)
T ss_pred cccE-----EEEEEecccCceeeecCch-----------hhhhhccCccccceeecccc---------------------
Confidence 6653 8999999999999998876 79999988777776655543
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.++..|-|.++|+|||.|+...++.
T Consensus 675 --------------SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 675 --------------SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred --------------CcceeeeeccCceEEEecCCCcceEEEE
Confidence 3899999999999999999998877764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=195.78 Aligned_cols=283 Identities=10% Similarity=0.152 Sum_probs=218.6
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecc--cceeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~--tg~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+.|.+|-|- .+.+.++..||+++||.++ ++..|..+.... -+|.+..|.|+|+ .+++ ++.. .-.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-fPi~~a~f~p~G~~~i~~----s~rr------ky~ 282 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-FPIQKAEFAPNGHSVIFT----SGRR------KYL 282 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc-CccceeeecCCCceEEEe----cccc------eEE
Confidence 567888887 8999999999999999975 234777888764 7999999999999 5555 4566 778
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEE
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLL 156 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la 156 (389)
+.||+.++++....++.+++ ...+...+.| |++++||..+..|-|.|=..+|++++.+++ .+.|.++.|| +|..|.
T Consensus 283 ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred EEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEE
Confidence 89999999985444444433 1123346677 899999999999999999999999999998 5788999999 898887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+++ .++.|.+||+.+-.|++++.. ||-| .=.+++.
T Consensus 361 ~~~---~~GeV~v~nl~~~~~~~rf~D-----------------------~G~v-------------------~gts~~~ 395 (514)
T KOG2055|consen 361 ASG---GTGEVYVWNLRQNSCLHRFVD-----------------------DGSV-------------------HGTSLCI 395 (514)
T ss_pred EEc---CCceEEEEecCCcceEEEEee-----------------------cCcc-------------------ceeeeee
Confidence 763 346899999998888888872 1111 1256788
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC-------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~-------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
|++|++||+|| -|-|-|||.+ -+.++++..-... |.++.|+||+|+||.+|.- .+..+
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~~---------~knal 461 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASRV---------KKNAL 461 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhhc---------cccce
Confidence 99999999999 8999999943 2355666543333 8999999999999999864 46889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 309 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 309 klWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
||=.+.+-. ++. +.+ +-+.....|+|++|||.|-+||-|.++|.|+||.
T Consensus 462 rLVHvPS~T---VFs--------NfP--------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 462 RLVHVPSCT---VFS--------NFP--------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred EEEecccee---eec--------cCC--------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 998876422 222 111 1222336999999999999999999999999996
Q ss_pred C
Q 016446 389 N 389 (389)
Q Consensus 389 ~ 389 (389)
.
T Consensus 511 L 511 (514)
T KOG2055|consen 511 L 511 (514)
T ss_pred e
Confidence 3
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=194.99 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=213.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..|.++|||.+.+.||. +-.+ ..|.||.+..+=+ ..+.+.-..-+++.+++|+ +|..|-|.+.+|+
T Consensus 26 s~I~slA~s~kS~~lAv----sRt~------g~IEiwN~~~~w~--~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAV----SRTD------GNIEIWNLSNNWF--LEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGS 91 (691)
T ss_pred cceEEEEEeccCCceee----eccC------CcEEEEccCCCce--eeEEEecCCCCceeeEEEc--cCCeEEeecCCce
Confidence 68999999999998888 3455 6888999876543 2223332344567789997 4667888999999
Q ss_pred EEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE--EeecCCceeEEEEEecCCC
Q 016446 125 YKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV--FYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 125 iklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t--l~~~~~~~~~v~f~~~~~~ 199 (389)
|.-||+.+++.++.+. ++.||+++.+| +..+++++ +|+-+.+.++.+++.... |.-..+++.+|.|. +++-
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~~~ 167 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PTGT 167 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEec-CCcc
Confidence 9999999999998886 68999999996 77888774 346888999988887643 33334889999998 7778
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEE-------cc-cCCCceEEEEEcCCCcEEEEE-cCCeEEEEeCC-CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEV-------SR-TEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~-------l~-gh~~~v~sv~fspdg~~laS~-sD~tIklWd~~-G~~l~tl~gh~~ 269 (389)
+|++|+.|+-||+||++++..+.. +. +..--||+|.|..|+. |||| |-|+|+.||.. |.+++.+..|..
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 899999999999999999987662 22 2455799999998886 5566 59999999997 999999999987
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEE--ecCCCCCCCcccccCCCCCCCccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAK--INATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~t--l~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
- |.+++..+++.++++++.| +.|-.....+++- +.. ...|.
T Consensus 247 d-----Vl~Lav~~~~d~vfsaGvd-----------~~ii~~~~~~~~~~wv~~~~r~~h~------------------- 291 (691)
T KOG2048|consen 247 D-----VLALAVADNEDRVFSAGVD-----------PKIIQYSLTTNKSEWVINSRRDLHA------------------- 291 (691)
T ss_pred c-----eeEEEEcCCCCeEEEccCC-----------CceEEEEecCCccceeeeccccCCc-------------------
Confidence 5 8999999999999999876 6666666554432 111 12333
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..|.+++..++ .|+||+.|.++.+
T Consensus 292 ---------------hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 ---------------HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ---------------ccceeeeeecc--eEEecceeeEEEE
Confidence 58999999998 8999999998754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=196.71 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=205.0
Q ss_pred EEEEecCce-EEEEecccceeeeeeecC-CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 16 VFALAHSGV-CAAFSRETNRRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 16 ~a~~~~~gt-iklW~~~tg~~l~tl~~~-~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
+.+.+.|.. |..||+.||..+-++.+. .+..--.-+.++ ++++++. ... ..+.+|.+....... +.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq---~~r------p~l~vw~i~k~~~~~-q~ 77 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQ---LKR------PLLHVWEILKKDQVV-QY 77 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeec---ccC------ccccccccCchhhhh-hh
Confidence 455566655 999999999988888876 211111222333 6666643 122 466677764333211 11
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
. -..+-+.+++=+ |+|.+|+.|..-+.+.+|.+.+|+++..++. ..|.++.|| ||.+|.++ +.|+-|.+|
T Consensus 78 ~---v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW 150 (476)
T KOG0646|consen 78 I---VLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVW 150 (476)
T ss_pred c---ccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEE
Confidence 0 122234467665 8999999888999999999999999988875 479999999 78888775 567899999
Q ss_pred EcC---------CCeEEEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 171 SIE---------DGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 171 d~~---------tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
.+. +-+.+..|.+|+-+|.++....- ...+++++|+|+||||||+..|.++.++. -...+.+++..|-.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccc
Confidence 864 34567788888888877766421 34789999999999999999999988754 33578999999999
Q ss_pred cEEEEEc-CCeEEEEeC-----------------CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 241 QLFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~-----------------~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
+.+-.|. +|.|-+-++ +++.++.|.||.+. ..|.++++|-||..|+||+.|
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~d-------- 298 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDED-------- 298 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCCC--------
Confidence 9998887 998876653 23456788999883 138999999999999999765
Q ss_pred CCCCeEEEEeCCCCeEEEEec
Q 016446 303 GSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 303 s~D~tIklWd~~tg~~l~tl~ 323 (389)
|+|.|||+.+-||++++.
T Consensus 299 ---g~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 299 ---GKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ---CCEEEEecchHHHHHHHh
Confidence 999999999999999987
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=204.29 Aligned_cols=235 Identities=11% Similarity=0.135 Sum_probs=190.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCC-eEEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g-~~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.|.|. |+|..|.+++.|+.||+|+-..- +.-.++ ++..|.+++---+ .|+++ +.++||.+..+..|+.-..|
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 59997 99999999999999999996544 221222 4677888776644 56565 45689999999887744333
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 259 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~ 259 (389)
.-.+-+++.++|+ -+|..+|+||.|-.|||-++.++.....+++|..+|..|.|.|.+++||+++ ||+|++||++ |.
T Consensus 93 ~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 3223788999998 5678999999999999999999999999999999999999999999999999 9999999997 99
Q ss_pred EEEEeccCcCCcCC----CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 260 LVTSFEDHLLWHPD----CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 260 ~l~tl~gh~~~~~~----~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
+..+|.+=.. ..+ ..+..++|+|+|-.+|..+. |++|++++..+.+...+|+....+
T Consensus 172 ~~~tl~~v~k-~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s------- 232 (933)
T KOG1274|consen 172 LSKTLTGVDK-DNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS------- 232 (933)
T ss_pred hhhhcccCCc-cccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc-------
Confidence 9988876322 111 12567999999665665555 489999999999999999874421
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+..+.|||+|++||+++-||.|-|||.
T Consensus 233 -------------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 233 -------------------------SKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred -------------------------cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 35899999999999999999999999983
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=184.36 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=179.4
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EEEEe--cCCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l~tl--~~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~ 173 (389)
+..|.|+ +.|+.+|+||.|++|||||.+... |.... |+..|+.|.+- | ||.+|++ +.|+|++||.=+
T Consensus 16 ihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~iWEE~ 91 (361)
T KOG2445|consen 16 IHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceeeeeec
Confidence 3479997 899999999999999999976443 33333 35789999999 6 9999987 566999999731
Q ss_pred ---------CCeEEEEEeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCC-CeE-----EE-------EcccCCCc
Q 016446 174 ---------DGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRN-AEL-----ME-------VSRTEFMT 230 (389)
Q Consensus 174 ---------tG~~l~tl~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~t-g~~-----~~-------~l~gh~~~ 230 (389)
.-..+.+|......+..|.|.|.. |=+||+.+.||++|||+.-. .++ .. .+..+...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 223456777767888999998554 34566678999999997543 222 11 12245567
Q ss_pred eEEEEEcC---CCcEEEEEcCC------eEEEEeCC--C-cE--EEEeccCcCCcCCCCeeEEEECCC----CCEEEEEe
Q 016446 231 PSAFIFLY---ENQLFLTFRNR------TVAVWNFR--G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYC 292 (389)
Q Consensus 231 v~sv~fsp---dg~~laS~sD~------tIklWd~~--G-~~--l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s 292 (389)
-.+|.|+| .-++||.|+|. .++||... | ++ +.+|.+|..+ |.+|+|.|+ -+.||.++
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEee
Confidence 77888887 46789999865 99999984 5 33 5688899988 799999995 67899998
Q ss_pred cCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC
Q 016446 293 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 372 (389)
Q Consensus 293 ~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg 372 (389)
.| | |+||++..- +-...+.-..++ +.. .+=.....+-+.+|-..||.|.|+=-|
T Consensus 247 kD-----------g-v~I~~v~~~-~s~i~~ee~~~~---------~~~----~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 247 KD-----------G-VRIFKVKVA-RSAIEEEEVLAP---------DLM----TDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred cC-----------c-EEEEEEeec-cchhhhhcccCC---------CCc----cccceEEeeeccCCCCceEEEEEeeee
Confidence 75 7 999998631 110000000000 000 000123334445555799999999999
Q ss_pred CEEEEecCCCcEEEcc
Q 016446 373 NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 373 ~~LaSgs~D~tIrlW~ 388 (389)
.+|+|.+.||+||||.
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=198.33 Aligned_cols=306 Identities=12% Similarity=0.121 Sum_probs=228.1
Q ss_pred cEEEEE--eeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIV--AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~--~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
.|+.|- ++|+.||+++.|||+|+|.+.||+|+++++.. +.|+||+|+|.+..=+.+.|.+ . .+-|-+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~--~-------~~~ivn 470 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVG--E-------CVLIVN 470 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEec--C-------ceEEeC
Confidence 455554 45999999999999999999999999999984 7999999999998544444432 2 111111
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe----cCCCeEEEEeCC---CCe---EEEEecCCcEEEEEEc-C
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS----AQDSIYKVFDLK---NYT---MLYSISDKHVQEIKIS-P 151 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~----s~D~tiklWdl~---~g~---~l~tl~~~~V~~vafS-~ 151 (389)
-.-|.-. .+. +.-.+|+++ ..|.++-.|.-. .++ |+..-+...|..|.++ .
T Consensus 471 p~~G~~~---------------e~~---~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 471 PIFGDRL---------------EVG---PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred ccccchh---------------hhc---chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 1222110 000 011122222 234567788743 222 4444457899999999 8
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
|.+||+-..++....|-|-++.-+...--|.-..+.+..|.|.+.....++++. ..|||||+..+++++.|.....+|
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL~tg~kwi 610 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKLLTGSKWI 610 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHHhcCCeee
Confidence 999999988888788888888877776666544578899999843333333333 679999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
.+++.+|.|..|+.++ |+.+-..|++ .+..++|.-|... |.+|+|++-=-++||||.| |++
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sdD-----------gtv 674 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSDD-----------GTV 674 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecCC-----------CcE
Confidence 9999999999999999 9999888886 5788999989876 7999999999999998765 899
Q ss_pred EEEe------CCCCe---EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 309 NVSS------ILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 309 klWd------~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
.++. +...- .+..|+||... +.-.|..+.|+|.--+|.|++
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~------------------------------~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKT------------------------------NDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceee------------------------------cccceEeecccCCCceEEecC
Confidence 9885 21111 46778999721 013688999999999999999
Q ss_pred CCCcEEEc
Q 016446 380 RHGLVHVW 387 (389)
Q Consensus 380 ~D~tIrlW 387 (389)
.||+||||
T Consensus 725 Ad~tirlf 732 (733)
T KOG0650|consen 725 ADGTIRLF 732 (733)
T ss_pred CCceEEee
Confidence 99999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=187.39 Aligned_cols=275 Identities=11% Similarity=0.150 Sum_probs=217.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecc-----------------cc-eeeeeeecCCcceEEEEEEeeCCCEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRE-----------------TN-RRICFLNVSPDEVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~-----------------tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s 63 (389)
+.++.-.|+ |..||+++-|-.|||.|.+ .+ -.++||--| .+.|+.+.|.|..+.|||
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH-~devn~l~FHPre~ILiS-- 189 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH-VDEVNDLDFHPRETILIS-- 189 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc-cCcccceeecchhheEEe--
Confidence 456667788 9999999999999999986 11 367888886 499999999999999999
Q ss_pred EeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---
Q 016446 64 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--- 140 (389)
Q Consensus 64 ~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--- 140 (389)
++.| .+++|.|...-..-...+.|+..+ .+.++.|. |.|.+|+-|.+--++||+|++|.+|.....
T Consensus 190 --~srD------~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 190 --GSRD------NTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --ccCC------CeEEEEecccHHHHHHHHHhhccc--eeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 5678 899999984322212334555222 35789997 999999999999999999999999976552
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ec-CCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 141 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HL-LHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 141 --~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
.+.|.+|.+|+ |.+-+++ +-|+-|||||=-.++|+.++. -| ...|-+..|. .++.++++++.|.++|||.+
T Consensus 259 qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred ccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeee
Confidence 36899999995 6666665 456899999999999999997 34 3456888887 67889999999999999999
Q ss_pred CCCeEEEEcccC-----CCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCC
Q 016446 216 RNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 216 ~tg~~~~~l~gh-----~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.+|++++...|- +..-....|+..-.+++.-. -+.+--||.+ ++.+..+. ||.+. |+.+.-||.+-
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~p 409 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVEP 409 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCCC
Confidence 999999987553 33334455888877777664 6678889996 65444333 88887 68999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEe
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
-.+++|.| -.+|.|-
T Consensus 410 ~FmTcsdD-----------~raRFWy 424 (430)
T KOG0640|consen 410 AFMTCSDD-----------FRARFWY 424 (430)
T ss_pred ceeeeccc-----------ceeeeee
Confidence 99998775 7999995
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=179.49 Aligned_cols=261 Identities=10% Similarity=0.100 Sum_probs=196.8
Q ss_pred cEEEEEee---ccEEEEEecCceEEEEeccc-ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA---RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~---~~~~a~~~~~gtiklW~~~t-g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.|.+|.|| .-.++++|.|++||+|+++. |+..-.....+..+|-+++||.||..+++ ++-| .++++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~----g~~D------k~~k~ 98 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS----GGCD------KQAKL 98 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe----eccC------CceEE
Confidence 46788898 55677999999999999875 56665555556689999999999998888 5566 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~ 157 (389)
|||++|++ +.+- .|-+.+..+.|-++ +-+.|++||.|+|+|.||....+++.++. -+.|.+...= | +++.
T Consensus 99 wDL~S~Q~---~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p--m~vV 171 (347)
T KOG0647|consen 99 WDLASGQV---SQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP--MAVV 171 (347)
T ss_pred EEccCCCe---eeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc--eeEE
Confidence 99999986 2222 23345567777632 22589999999999999999999998887 5667665554 3 2323
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEE-ee-cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--------eEEEEcccC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVF-YH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--------ELMEVSRTE 227 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl-~~-~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--------~~~~~l~gh 227 (389)
+.. ++.|.+.+++++...... +. .--.+++|+.- ++.+..|.|+-.|.+-|-.+..+ +|.+.-..-
T Consensus 172 ata---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 172 ATA---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred Eec---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 221 367999999887654321 11 11345788876 67788899999999999999887 343322211
Q ss_pred C---CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 228 F---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 228 ~---~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
. -.|++|+|+|.-..|+|++ ||++-.||.+ ...|++.+-|..+ |..-.|+.+|+++|=+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp-----Itcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP-----ITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc-----cceeEecCCCCEEEEE
Confidence 1 2688899999999999997 9999999998 6678888888887 7899999999999865
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=176.80 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=201.7
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
|+....+.|-+|-|+|.++.|+.+| .| ...+++++..-.+ ...|. +...+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvss----WD------gslrlYdv~~~~l---~~~~~--~~~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSS----WD------GSLRLYDVPANSL---KLKFK--HGAPLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEe----cc------CcEEEEeccchhh---hhhee--cCCceeeeecc--CCceEEE
Confidence 4445568999999999988777744 77 6677777754433 22343 22334679996 4668899
Q ss_pred ecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe
Q 016446 119 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~ 195 (389)
|+.|++||+.|+++++...... ...|++|-+++ |..+ ++ +-|++||+||..+-.+.-++. ....|..+.
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI-sg---sWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~ 142 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI-SG---SWDKTIKFWDPRNKVVVGTFD----QGKKVYCMD 142 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE-Ec---ccCccEEEEeccccccccccc----cCceEEEEe
Confidence 9999999999999998766664 57899999993 5555 44 566899999988744554544 222444443
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C----cEEEEeccC
Q 016446 196 QFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDH 267 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G----~~l~tl~gh 267 (389)
..+.+|+.|..|..+.+||+++-....+- ..-.-++++|++-|++.-.+.+| ||-|-+=.++ - +....|+.|
T Consensus 143 v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 143 VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 45899999999999999999875432221 23345789999999999999999 9988776664 3 234466666
Q ss_pred cCCcCCC----CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 268 LLWHPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 268 ~~~~~~~----~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
-....+. -|++++|+|=-+++|||+. ||-|.+||+.+.+.+..|..-.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~----------------- 274 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYE----------------- 274 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCC-----------------
Confidence 5411110 2799999999999999854 6999999999999888886654
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
..|-+++||-||..||.|+.
T Consensus 275 -----------------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 -----------------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -----------------CceEEEEeccCCCeEEEEec
Confidence 36999999999999999984
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=202.66 Aligned_cols=275 Identities=12% Similarity=0.180 Sum_probs=204.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC----CcceeEeeecccCceeEEEecCCCeEEEEecC
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD----SGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~----~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
..+.|..+|+-.+|+.+. . ++||+..+.=-+ ..-+++ ..+.+|. ..-.|++..-+.++||+++.
T Consensus 41 ~~nAIs~nr~~~qiv~AG----r--s~lklyai~~~~-~~~~~~~~~k~kqn~~~-----S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG----R--SLLKLYAINPND-FSEKCNHRFKTKQNKFY-----SAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccceEeecCCcceeEEec----c--cceeeEeeCccc-CCcceeeecccccceee-----ehhhcccccchhhhheeecC
Confidence 347788889988888852 2 455544432111 011110 0122332 12247776556789999999
Q ss_pred CCeEEEEeCCC---CeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE
Q 016446 122 DSIYKVFDLKN---YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 122 D~tiklWdl~~---g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~ 194 (389)
.|.|-+||+.- .++++.|. ...|..+.|++ -.+|+++ +.|++||+||++.-+-..++.+....++.|.|+
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---SQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG---SQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec---CCCceEEEEeeecccccccccccchhhhceeec
Confidence 99999999975 33555554 45899999993 5566554 778999999999999999999888899999999
Q ss_pred ecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcC
Q 016446 195 EQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLL 269 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~ 269 (389)
+..+.+++++.+.|.+++||++. .+|...|..|.+.|..+-++|++.+||||+ |++|||||.. ++ .+.|.+ ..
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Ti 263 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TI 263 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ec
Confidence 77788999999999999999985 678888999999999999999999999999 9999999997 44 334443 22
Q ss_pred CcCCCCeeEEEECCCCCE-EEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 270 WHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~-laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
. .|..|.|=|+-++ ||+++. ..|-.|++||+..-- .-+++..|+
T Consensus 264 a----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~--------------------- 309 (839)
T KOG0269|consen 264 A----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHT--------------------- 309 (839)
T ss_pred c----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccC---------------------
Confidence 2 1789999998765 455543 357899999987433 347788887
Q ss_pred cccceecccccccCCEEEEEECC-CCCEEEEecCCCcE
Q 016446 348 KSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 384 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~tI 384 (389)
..|+.+++-. |...|-|+|.|++|
T Consensus 310 -------------~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 310 -------------DSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -------------ccccceeccCCCceeeEeecCccHH
Confidence 4677777755 67789999999986
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-19 Score=183.39 Aligned_cols=265 Identities=11% Similarity=0.111 Sum_probs=209.8
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccce-eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+++.|.+..|+ ...||++=.+|.|.+|++..+- +..++.|+.+..|.+++|+ +|..|.|+ +.+ ..+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~----g~s------g~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSS----GLS------GSI 92 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEee----cCC------ceE
Confidence 67889999999 4559999999999999987664 4456788877789999999 55668884 355 678
Q ss_pred eEeEeccCCCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE--ec--CCcEEEEEEcC-C
Q 016446 79 KIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS--DKHVQEIKISP-G 152 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t--l~--~~~V~~vafS~-g 152 (389)
.-||+.+++. +..++ .-+.+++++.+ |.+..|+-|.+||.+...+..+++..+. |. ...|.+|+|+| |
T Consensus 93 ~EwDl~~lk~-----~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 93 TEWDLHTLKQ-----KYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred EEEecccCce-----eEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 8899999886 33322 44557889997 8899999999999999999888886643 32 37899999995 6
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEE-------ee-cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVF-------YH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 224 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl-------~~-~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l 224 (389)
..||++ +.|+-||+||+..|+.++.. .- -.-.+|+|.|.. ++.|++|-.-|+|+.||.+.|.+++..
T Consensus 167 ~~i~~G---s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 167 TKIAGG---SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred cEEEec---ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhh
Confidence 668876 45589999999999998821 11 112469999984 789999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc---EEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCC
Q 016446 225 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 295 (389)
Q Consensus 225 ~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~---~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~ 295 (389)
.-|...|.+++-.+++.++.+++ |++|-.+...+. -+. ....|.+. |.+++..++ .|.||+.|-
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-----vrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-----VRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-----ceeeeeecc--eEEecceee
Confidence 99999999999999999999999 998877777532 222 22345443 789999888 888888763
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=176.75 Aligned_cols=275 Identities=15% Similarity=0.141 Sum_probs=195.7
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEeccc-----ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~t-----g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
-.|.++-|+ |+.+|+.+.|++||||+... -+||+. |..- +--..|+|+||-+.++.+.. .. .
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~-dhpT~V~FapDc~s~vv~~~---~g------~ 155 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEY-DHPTRVVFAPDCKSVVVSVK---RG------N 155 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccC-CCceEEEECCCcceEEEEEc---cC------C
Confidence 358899999 99999999999999999752 234442 1111 23468999999998877654 22 2
Q ss_pred eeeEeEe---ccCCCCCcce-----eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEE
Q 016446 77 STKIEYI---RRGKPDSGFA-----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQE 146 (389)
Q Consensus 77 ~~~l~~i---~~g~~~~~~~-----l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~ 146 (389)
.++++.+ ..|..-+... -|...+..-+-.+-.. .++++|+|+|.|-+|-||+++ |+.+.++.. ..-..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 3444443 3444411111 1111122222334443 679999999999999999997 999988864 35677
Q ss_pred EEEcC-CceEEEEecCCCCeeEEEEEcC---CCe-----EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 147 IKISP-GIMLLIFNRSSSHVPLKILSIE---DGT-----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 147 vafS~-g~~la~~~~~s~d~tiklWd~~---tG~-----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
.|.|| |..+|+++.. --||+|.+- .|+ ....|+||...|.+.+|+ ++..++++.|.||++||||..-
T Consensus 234 aavSP~GRFia~~gFT---pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFT---PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeCCCCcEEEEecCC---CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeeccc
Confidence 89995 7788776544 469999863 232 335788999999999998 6788999999999999998752
Q ss_pred ----Ce---EEEEc----ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEecc-CcCCcCCCCeeEEEECCC
Q 016446 218 ----AE---LMEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 218 ----g~---~~~~l----~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpd 284 (389)
++ .+++. ..-....-.++.+|.|+.||.+.-.+++++..+ |+-+-+|+. |..- |.+++|+||
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~-----Is~is~~~~ 384 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTT-----ISSISYSSD 384 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCc-----eeeEEecCC
Confidence 22 22322 112233447899999999998888899999997 988877774 4433 799999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|++||+++ |..+|+..
T Consensus 385 g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CcEEeeec------------ceeeeeec
Confidence 99999986 47888765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-19 Score=174.29 Aligned_cols=272 Identities=13% Similarity=0.120 Sum_probs=183.6
Q ss_pred EEEEEecCceEEEEeccc-ce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec-cCCCCC
Q 016446 15 IVFALAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDS 90 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~t-g~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~-~g~~~~ 90 (389)
..++..+++.|++|++.+ |+ +++++... .....++++|||+.|..+.. .+ ..+.+|++. .|++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~---~~------~~i~~~~~~~~g~l~- 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVR---PE------FRVLSYRIADDGALT- 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEEC---CC------CcEEEEEECCCCceE-
Confidence 345568899999999964 43 66666532 45678899999998876432 33 566677775 45431
Q ss_pred cceeEeeecccCceeEEEecCCCeEEEEecC-CCeEEEEeCC-CCe---EEEEecC-CcEEEEEEc-CCceEEEEecCCC
Q 016446 91 GFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK-NYT---MLYSISD-KHVQEIKIS-PGIMLLIFNRSSS 163 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~-~g~---~l~tl~~-~~V~~vafS-~g~~la~~~~~s~ 163 (389)
.+-.....++|..++|+ |||++|.+++. ++.|.+|+++ +|. .+..+.+ .....++|+ +|+++++++ ..
T Consensus 72 --~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~ 146 (330)
T PRK11028 72 --FAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LK 146 (330)
T ss_pred --EeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CC
Confidence 11112234567889998 89998887764 8999999996 343 3344433 457889999 577776663 44
Q ss_pred CeeEEEEEcCCCeEEE-------EEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCe--EEEEcccC----
Q 016446 164 HVPLKILSIEDGTVLK-------VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAE--LMEVSRTE---- 227 (389)
Q Consensus 164 d~tiklWd~~tG~~l~-------tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~--tg~--~~~~l~gh---- 227 (389)
+++|++||+.+...+. ++. .......++|+ |++.++.+.. .+++|.+||+. +|+ .++.+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecC-CCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 5899999998733332 111 12344678998 7788887876 59999999997 343 34444322
Q ss_pred --CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 228 --FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 228 --~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
..+...++|+|||++|.++ . +++|.+|+++ +..+ ++.+|.... ...+.++|+|||++|++++..
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~------- 294 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE--TQPRGFNIDHSGKYLIAAGQK------- 294 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc--ccCCceEECCCCCEEEEEEcc-------
Confidence 2234568999999988888 4 8999999984 4322 333443210 013689999999999998753
Q ss_pred CCCCCeEEEEeC--CCCeE
Q 016446 302 EGSAGSINVSSI--LTGKC 318 (389)
Q Consensus 302 ~s~D~tIklWd~--~tg~~ 318 (389)
+++|.+|++ .+|.+
T Consensus 295 ---~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 295 ---SHHISVYEIDGETGLL 310 (330)
T ss_pred ---CCcEEEEEEcCCCCcE
Confidence 589999986 45554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-21 Score=178.10 Aligned_cols=246 Identities=11% Similarity=0.090 Sum_probs=184.6
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC-CCe
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV-NGK 114 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p-dG~ 114 (389)
.++.-.|.+.|.++...--|+.||++| -| +.|||..++.... .+.+-+ ..+.|.++-|+|..| -|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcs----SD------~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCS----SD------GTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeec----CC------ccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCc
Confidence 344445678999999999999999965 55 7899999854432 122322 346677788999754 499
Q ss_pred EEEEecCCCeEEEEeCCCCeE--E--EEecCCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCC--eEE-EEEeec
Q 016446 115 VLTYSAQDSIYKVFDLKNYTM--L--YSISDKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDG--TVL-KVFYHL 184 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~--l--~tl~~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG--~~l-~tl~~~ 184 (389)
+|||+|.||.|-||.-++|+- . ++.|...|++|+|.| |-+||.++ .|++|.+.+..+- -+- +...-|
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas---SDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS---SDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee---CCCcEEEEEEcCCCCccchhhhhcc
Confidence 999999999999999888862 2 344567899999996 77787764 4578999876542 222 333467
Q ss_pred CCceeEEEEEecC--C-----------CeEEEEeCCCcEEEEECCCCe--EEEEcccCCCceEEEEEcCCC----cEEEE
Q 016446 185 LHRNKKVDFIEQF--N-----------EKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYEN----QLFLT 245 (389)
Q Consensus 185 ~~~~~~v~f~~~~--~-----------~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~v~sv~fspdg----~~laS 245 (389)
.-.+.+|.+.|.. | .+|++|+.|.+||||+..+++ .-++|++|.++|+.||+.|.- .+|||
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 7888999997541 2 469999999999999998874 455699999999999999854 57999
Q ss_pred Ec-CCeEEEEeCCC---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 246 FR-NRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 246 ~s-D~tIklWd~~G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
++ ||++-||..+. +-..||. |..+ +.++.+.||+.|.+||.++.| +.|+||-
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll-~~f~---~~~w~vSWS~sGn~LaVs~Gd-----------Nkvtlwk 284 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLL-EEFP---DVVWRVSWSLSGNILAVSGGD-----------NKVTLWK 284 (299)
T ss_pred ecCCCcEEEEEecCccCccccccc-ccCC---cceEEEEEeccccEEEEecCC-----------cEEEEEE
Confidence 99 99999998752 2222332 1222 238999999999999998764 7999996
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=185.86 Aligned_cols=254 Identities=14% Similarity=0.207 Sum_probs=190.0
Q ss_pred eeeeEeEeccCCCCCcceeEe--eecccCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEE-Ee-cCCcEEEEEEc
Q 016446 76 RSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLY-SI-SDKHVQEIKIS 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~--~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~-tl-~~~~V~~vafS 150 (389)
+.+.+||+++|.. +++ ....-...++.- -++.+|+++.. ..-+.+|.+....... .+ -.+.|.+++-+
T Consensus 18 ~~~~~~dl~TGt~-----~~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 18 INCIVWDLRTGTS-----LLQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cceeEEecCCCce-----eEEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 6788899999975 222 110000111221 13467776653 5578899985444332 11 25789999999
Q ss_pred C-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC---------CCeE
Q 016446 151 P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---------NAEL 220 (389)
Q Consensus 151 ~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---------tg~~ 220 (389)
| |.+|+.+... +.|.||.+.+|++|.++..|-..+..+.|+ -|+..|+++|.||-|.+|++- +-++
T Consensus 91 n~G~~l~ag~i~---g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 91 NLGYFLLAGTIS---GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred CCceEEEeeccc---CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 5 7777654233 689999999999999999999999999998 678999999999999999763 2457
Q ss_pred EEEcccCCCceEEEEEcCC--CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 221 MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspd--g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+..+.+|.-+|..+-..+. .-+|+|+| |+|||+||+. |.+|.++.-... +.+++..|-++.+-.|+.
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt~--- 237 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGTE--- 237 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecCC---
Confidence 8889999999999888765 34688888 9999999997 999988864332 689999999999998765
Q ss_pred cccccCCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccccc
Q 016446 297 EDQWMEGSAGSINVSSILT----------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~t----------------g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
+|.|-+-++.+ +..+..+.||.+ -
T Consensus 238 --------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~--------------------------------~ 277 (476)
T KOG0646|consen 238 --------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN--------------------------------E 277 (476)
T ss_pred --------cceEEeeehhcCCcccccccccccccccceeeeeccccC--------------------------------C
Confidence 48887766532 223344445541 0
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|++|-||..|+||++||+|.+||.
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 49999999999999999999999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=189.82 Aligned_cols=274 Identities=13% Similarity=0.122 Sum_probs=215.1
Q ss_pred EEee--ccEEEEEecCceEEEEeccc----ceeeeeeecCCcceEEEEEEee------------CCCEEEEEEEeecCCC
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------------NNDSLITVSVYASDNF 70 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~t----g~~l~tl~~~~~~~v~sv~~sp------------dg~~l~s~s~~~~~d~ 70 (389)
.+|. ++.|.+...|+.+.+||+.. |++-..|- |+.-||+|--=| .|- .+++ +.|
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly--HS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TC----SsD- 401 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY--HSACIWDVENLPCNVHSPTAACLPRGC-FTTC----SSD- 401 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeee--ccceeeeeccccccccCcccccCCccc-eeEe----cCC-
Confidence 3555 88899999999999999753 77665554 568899887655 222 3453 355
Q ss_pred cceeeeeeeEeEeccCCCC---------------------------CcceeEeee------cccCceeEEEecCCCeEEE
Q 016446 71 SSLKCRSTKIEYIRRGKPD---------------------------SGFALFESE------SLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 71 ~~l~~~~~~l~~i~~g~~~---------------------------~~~~l~~~~------~~~~~~~v~Fs~pdG~~La 117 (389)
.+||||++.-+.-+ ....+|... ....+++|+.| ||||.||
T Consensus 402 -----~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLA 475 (1080)
T KOG1408|consen 402 -----GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLA 475 (1080)
T ss_pred -----CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceec
Confidence 69999998543211 111133211 22335779998 9999999
Q ss_pred EecCCCeEEEEeCCCCeEEEE--ecCCcEEEEEEc-C---CceEEEEecCCCCeeEEEEEcCCC-eEEEEEeecCCceeE
Q 016446 118 YSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKIS-P---GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKK 190 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~t--l~~~~V~~vafS-~---g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~~~~~~~~ 190 (389)
+|..-|++||++|.+-+.+.. .|..+|.++.|| | ...||+ ++.|.-|.++|+... -+++||.+|...+.+
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999999999987765544 456799999999 6 445554 467799999998643 356899999999999
Q ss_pred EEEEecCCC------------------------------------------------eEEEEeCCCcEEEEECCCCeEEE
Q 016446 191 VDFIEQFNE------------------------------------------------KLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 191 v~f~~~~~~------------------------------------------------~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
|.|...+.. ++++++.|+.|||+|+++|+..+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 999764322 56678999999999999999999
Q ss_pred Eccc---CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 223 VSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 223 ~l~g---h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
+|+| |.+..-.|..-|-|-|||++. |+|+-+.|+- |||+.++.||... |..+-|+||-+.|+|.+.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-----VTG~kF~nDCkHlISvsg---- 703 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-----VTGVKFLNDCKHLISVSG---- 703 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----eeeeeecccchhheeecC----
Confidence 9865 777888999999999999997 9999999995 9999999999976 899999999999999876
Q ss_pred ccccCCCCCeEEEEeCCC
Q 016446 298 DQWMEGSAGSINVSSILT 315 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~t 315 (389)
||.|-+|.+..
T Consensus 704 -------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 -------DGCIFVWKLPL 714 (1080)
T ss_pred -------CceEEEEECch
Confidence 49999999763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-19 Score=176.49 Aligned_cols=313 Identities=11% Similarity=0.116 Sum_probs=225.1
Q ss_pred ccEEEEEee----ccEEEEE--ecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA----RDIVFAL--AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~----~~~~a~~--~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
..|..|.|+ |-.++.. +.+..+.+||-+.+..+..+.-.+ +.|-...|.|-+..||.. .+. ..
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn-e~v~~a~FHPtd~nliit---~Gk-------~H 223 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN-EVVFLATFHPTDPNLIIT---CGK-------GH 223 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc-ceEEEEEeccCCCcEEEE---eCC-------ce
Confidence 358889998 5555554 456788899988888887777665 899999999998766662 223 46
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCce
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIM 154 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~ 154 (389)
+.+|+.+.|-+...+.+|......++.+|.|. +||+. ++|..+|+|-+|+..+.+..+.. |...|.++..- +|..
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 78898888877767778874333788999997 89975 56889999999998666654444 45789998888 5554
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEE-----------------------------------------EEeecCCceeEEEE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLK-----------------------------------------VFYHLLHRNKKVDF 193 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~-----------------------------------------tl~~~~~~~~~v~f 193 (389)
| + ++-|+.|-+|| ..=+.++ +..+|....+.++.
T Consensus 302 l-S---GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 302 L-S---GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred e-e---cCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 4 5 46679999998 3212111 11245555666666
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcC
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP 272 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~ 272 (389)
. |+..++++++.|++++||| ..++ ..-+--.+++.++.|.|-| .+|-|. -|.--+-|.+-+.+.++.--..+
T Consensus 377 h-ps~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~-- 449 (626)
T KOG2106|consen 377 H-PSKNQLLTCGQDKHVRLWN--DHKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ-- 449 (626)
T ss_pred C-CChhheeeccCcceEEEcc--CCce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCc--
Confidence 5 5566777788888888888 2222 2222234567888888888 777776 77666777764333333222223
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
++.|+|||||.+||.||.| +.|.|+-+.. |.......-|.+
T Consensus 450 ---ls~v~ysp~G~~lAvgs~d-----------~~iyiy~Vs~~g~~y~r~~k~~g------------------------ 491 (626)
T KOG2106|consen 450 ---LSVVRYSPDGAFLAVGSHD-----------NHIYIYRVSANGRKYSRVGKCSG------------------------ 491 (626)
T ss_pred ---eEEEEEcCCCCEEEEecCC-----------CeEEEEEECCCCcEEEEeeeecC------------------------
Confidence 7999999999999999875 8999998854 566666665653
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++|+.|.||+|+++|.+-|-|-.|-.|.
T Consensus 492 ---------s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 492 ---------SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ---------ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 5999999999999999999999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=182.95 Aligned_cols=345 Identities=14% Similarity=0.162 Sum_probs=241.2
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccc-ee----eeeeecCCcceEEEEEEeeC---CCEEEEEEEeecCCCcceeee
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETN-RR----ICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg-~~----l~tl~~~~~~~v~sv~~spd---g~~l~s~s~~~~~d~~~l~~~ 76 (389)
+|.=....|+.+.+...++.+.+|+...+ ++ +-.+...+ +.|.+|. .|. ++ |+. |+.+ .
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-~~Ital~-HP~TYLNK-Ivv----Gs~~------G 182 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-DFITALL-HPSTYLNK-IVV----GSSQ------G 182 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccC-CceeeEe-cchhheee-EEE----eecC------C
Confidence 34444555888999999999999998763 22 12233333 3466654 343 33 333 3344 6
Q ss_pred eeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CC
Q 016446 77 STKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PG 152 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g 152 (389)
...||++++|+. +++ ++....|.+++=+ |-=..+|-|-.+|+|.+.|++.++.+.++++ +.|.+++|. ||
T Consensus 183 ~lql~Nvrt~K~-----v~~f~~~~s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 183 RLQLWNVRTGKV-----VYTFQEFFSRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred cEEEEEeccCcE-----EEEecccccceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 778899999998 554 3344556667766 6667899999999999999999999999985 689999999 88
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEEcccC
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTE 227 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh 227 (389)
.-+++++.. -+++-+||++.-+++..+. -|.+.+....|. +....+++.+.|+.+|+|=..+|. .++.=.||
T Consensus 257 ~p~las~~~--~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH 333 (910)
T KOG1539|consen 257 NPLLASGRS--NGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH 333 (910)
T ss_pred CeeEEeccC--CceEEEEEcCCCeeeeeeeccccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCcchheeeccCC
Confidence 876655333 2789999999888887776 777888888887 434455566788888888444221 11111222
Q ss_pred C-------------------------------------------------------------------------------
Q 016446 228 F------------------------------------------------------------------------------- 228 (389)
Q Consensus 228 ~------------------------------------------------------------------------------- 228 (389)
.
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 2
Q ss_pred -----------------------------------CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe---ccCc
Q 016446 229 -----------------------------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF---EDHL 268 (389)
Q Consensus 229 -----------------------------------~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl---~gh~ 268 (389)
..+.+|+.++=|+...-|+ .|+|.++|++ |-...++ ..|.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 2345555555577777776 9999999998 8888888 4677
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCCCCCCCccccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.+ |.+|+..--++.++|++.+ |-+|.||.....++.+++- |. +...+-.+..+..+..--+
T Consensus 494 ~~-----V~gla~D~~n~~~vsa~~~-----------Gilkfw~f~~k~l~~~l~l~~~--~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 494 GE-----VTGLAVDGTNRLLVSAGAD-----------GILKFWDFKKKVLKKSLRLGSS--ITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred Cc-----eeEEEecCCCceEEEccCc-----------ceEEEEecCCcceeeeeccCCC--cceeeeeehhhhhhhhcCc
Confidence 66 8999998888999998764 9999999988887776642 22 1111111222111111001
Q ss_pred --------cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 --------KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 --------~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-+.++.-..-+|.+.|++++|||||++|+|++.|++||+||.
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 145555555678899999999999999999999999999984
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=173.53 Aligned_cols=258 Identities=13% Similarity=0.136 Sum_probs=185.1
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--cCCCCCcceeEeeecccCceeEEEecCC-C
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDDVN-G 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--~g~~~~~~~l~~~~~~~~~~~v~Fs~pd-G 113 (389)
+++.-.|.+.|.+|.|.+-|..+|++| -| .+++|||.. +|+..-+.. | ..+-+.+..|.+.+|. |
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCS----sD------q~vkI~d~~~~s~~W~~Ts~-W-rah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCS----SD------QTVKIWDSTSDSGTWSCTSS-W-RAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cccccCCcceeeeeeecccCceeeecc----CC------CcEEEEeccCCCCceEEeee-E-EecCCcEEEEEecCcccc
Confidence 456666779999999999999999954 66 778888863 333311111 1 2355566778887665 9
Q ss_pred eEEEEecCCCeEEEEeCC------CCe---EEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCC-----
Q 016446 114 KVLTYSAQDSIYKVFDLK------NYT---MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIED----- 174 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~------~g~---~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~t----- 174 (389)
|.+|++|.|+|++||.=. .|+ ...++. ...|.+|.|.| |-+||++ +.|+++||++...
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLS 150 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccc
Confidence 999999999999999741 121 234554 36899999997 8888876 5668999987654
Q ss_pred -CeEEEEEe-------ecCCceeEEEEEec--CCCeEEEEeCC-----CcEEEEECCC-C-eE--EEEcccCCCceEEEE
Q 016446 175 -GTVLKVFY-------HLLHRNKKVDFIEQ--FNEKLLVKQEN-----ENLQILDVRN-A-EL--MEVSRTEFMTPSAFI 235 (389)
Q Consensus 175 -G~~l~tl~-------~~~~~~~~v~f~~~--~~~~l~~~s~D-----~tIklWd~~t-g-~~--~~~l~gh~~~v~sv~ 235 (389)
-++.+.+. .+..+...|.+++. ....||.|+.+ +.++||.... + ++ +..|.+|.++|++++
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 22222332 23345577888622 23567777744 5899997553 3 33 456889999999999
Q ss_pred EcCC----CcEEEEEc-CCeEEEEeCCC---------------------cEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 236 FLYE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 236 fspd----g~~laS~s-D~tIklWd~~G---------------------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
|.|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|.+|+
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILS 304 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEe
Confidence 9994 57899998 99 99999753 235667788865 89999999999999
Q ss_pred EEecCCCcccccCCCCCeEEEEeCC---CCeEEEEecCCC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATN 326 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~---tg~~l~tl~gH~ 326 (389)
|.+. ||+||||... .-+|+..|+...
T Consensus 305 StGd-----------DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 305 STGD-----------DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred ecCC-----------CceeeehhhhhhhhheeeeEEeccC
Confidence 9765 5999999632 245777776544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=187.21 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=167.3
Q ss_pred CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 22 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
+..+.+||.+ |...+++..+. +.+.++.|||||+.|+.++.. ..+ .++++|++.+|+. ..+- ...+
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~-~~~------~~i~i~dl~tg~~---~~l~--~~~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFE-NKK------SQLVVHDLRSGAR---KVVA--SFRG 248 (429)
T ss_pred eEEEEEECCC-CCCceEeccCC-CccccceEcCCCCEEEEEEec-CCC------cEEEEEeCCCCce---EEEe--cCCC
Confidence 4699999985 77777888764 789999999999999997643 234 6789999988764 1221 1223
Q ss_pred CceeEEEecCCCeEEEEec-CCCeEEEE--eCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-
Q 016446 102 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED- 174 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s-~D~tiklW--dl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t- 174 (389)
+...++|| |||+.|+.++ .|+.++|| |+.++++ ..+. ...+.+++|| +|..|+.++. .++..+||++..
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~ 324 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSAS 324 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECC
Confidence 44578998 9999888765 68877766 6666654 3343 3467889999 5777776542 345677886643
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 253 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIkl 253 (389)
|.....+ .+.. ..+.|+ |++++|+..+.++.++ ||+.+|++.....++ ...+++|+|||++|+.++ ++.+++
T Consensus 325 ~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~ 397 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVVK-QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKV 397 (429)
T ss_pred CCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEEE-EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceE
Confidence 2222333 3322 456776 7888888887776555 999999876554443 346788999999999998 998887
Q ss_pred EeC---CCcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 254 WNF---RGELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 254 Wd~---~G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
|.+ +|++++.|.+|... +..++|||-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 764 69999999988765 678999984
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=183.72 Aligned_cols=220 Identities=14% Similarity=0.127 Sum_probs=152.6
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---CeEEEEeCCCCeE--EEEecCCcEEEEEEc
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKIS 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---~tiklWdl~~g~~--l~tl~~~~V~~vafS 150 (389)
..+.+||.. |.- .+.+.. +...+.+++|| |||+.||+.+.+ .+|++||+.+|+. +..+.+ ...+++||
T Consensus 184 ~~i~i~d~d-g~~--~~~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYD-GFN--QFIVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECCC-CCC--ceEecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 788888853 432 122322 22345679998 999999998754 4799999998874 333333 34579999
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeEEEEcccC
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSRTE 227 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t-g~~~~~l~gh 227 (389)
+|.+||.+........|.+||+.+|++ ..+..+...+.++.|+ |++..|+..+ .++..+||++.. +...+.+ ++
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 588888765332223455668777664 5666666677889998 7888888765 788999998753 2223333 44
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
.. ...+|+|||+.|+..+ ++.++ ||+. |++......+. ..++.|||||++|+.++.+
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~~----------- 392 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNVVK-QDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSSTQ----------- 392 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCEEE-EECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEcC-----------
Confidence 43 4578999999999887 76664 9986 76543222221 3578899999999998764
Q ss_pred CeEEEEeC--CCCeEEEEecCCC
Q 016446 306 GSINVSSI--LTGKCLAKINATN 326 (389)
Q Consensus 306 ~tIklWd~--~tg~~l~tl~gH~ 326 (389)
+.+++|++ .+|++++.|.+|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 66777765 4699999999887
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-19 Score=187.14 Aligned_cols=263 Identities=12% Similarity=0.100 Sum_probs=199.2
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
|.+.-..|.|-|+|+.|.++ +.| +.|++|....-.-.... +-. +...+.+++ -++..+++|+.|
T Consensus 12 ht~G~t~i~~d~~gefi~tc----gsd------g~ir~~~~~sd~e~P~t-i~~--~g~~v~~ia---~~s~~f~~~s~~ 75 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTC----GSD------GDIRKWKTNSDEEEPET-IDI--SGELVSSIA---CYSNHFLTGSEQ 75 (933)
T ss_pred ccCceEEEEEcCCCCEEEEe----cCC------CceEEeecCCcccCCch-hhc--cCceeEEEe---ecccceEEeecc
Confidence 34667899999999999985 455 67778875332110000 100 111122343 346689999999
Q ss_pred CeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 123 SIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
++|.++...+++.-..|. .-.++.++|+ +|.++|.+ ++|-.||+-++.++...++|.+|.++|..|.|. |.+.
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~~~ 151 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PKGN 151 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeecccCCceeeeeEc-CCCC
Confidence 999999998877532232 4578999999 89999876 566899999999999999999999999999998 6678
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccC--------CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh--------~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
.||+.+-||+|++||+++|.+.+++.+- ...+..++|+|+|-.||... |++||+++.. ++....|.+...
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 8888899999999999999998887652 33566789999965565555 9999999997 788877775443
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. ..+..+.|||+|+|||++..| |-|-|||+++ ..-|.-
T Consensus 232 s---s~~~~~~wsPnG~YiAAs~~~-----------g~I~vWnv~t------~~~~~~---------------------- 269 (933)
T KOG1274|consen 232 S---SKFSDLQWSPNGKYIAASTLD-----------GQILVWNVDT------HERHEF---------------------- 269 (933)
T ss_pred c---cceEEEEEcCCCcEEeeeccC-----------CcEEEEeccc------chhccc----------------------
Confidence 2 126899999999999998775 8999999987 122441
Q ss_pred cceecccccccCCEEEEEECCCCCEEEE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
...|.+++|-|++.-|--
T Consensus 270 ----------~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 270 ----------KRAVCCEAWKPNANAITL 287 (933)
T ss_pred ----------cceeEEEecCCCCCeeEE
Confidence 158999999999876543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=168.48 Aligned_cols=262 Identities=12% Similarity=0.153 Sum_probs=176.0
Q ss_pred eeeeEeEecc-CCCCCcceeEeeecccCceeEEEecCCCeEEEEe-cCCCeEEEEeCC-CCeE--EEEec-CCcEEEEEE
Q 016446 76 RSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKHVQEIKI 149 (389)
Q Consensus 76 ~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~-s~D~tiklWdl~-~g~~--l~tl~-~~~V~~vaf 149 (389)
..|++|++.+ |++.. +-.....+.+..++|+ |||++|..+ ..++.|.+|++. +|++ +.+.. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~---~~~~~~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL---LQVVDVPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee---eeEEecCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 6788888853 54311 1111234566779998 899988654 468999999986 4553 23333 345678999
Q ss_pred c-CCceEEEEecCCCCeeEEEEEcCC-C---eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeEEE
Q 016446 150 S-PGIMLLIFNRSSSHVPLKILSIED-G---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 222 (389)
Q Consensus 150 S-~g~~la~~~~~s~d~tiklWd~~t-G---~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t-g~~~~ 222 (389)
+ +|++|++++.. ++.|.+|++.+ | +.+..+.+. .+...++|+ |+++++++++ .+++|.+||+.+ |++..
T Consensus 88 ~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 88 DHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 9 58888777533 58999999963 4 334444432 345678887 6788887665 789999999986 43321
Q ss_pred ------EcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---Cc--EEEEeccCcC--CcCCCCeeEEEECCCCCE
Q 016446 223 ------VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 223 ------~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~--~l~tl~gh~~--~~~~~~v~sv~fSpdG~~ 287 (389)
.... ...+..++|+|||++|.++. +++|.+|+++ |+ ++.++..+.. ..+ .....++|+|||++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccceeEEECCCCCE
Confidence 1111 23577899999999997774 8999999995 33 3555543211 000 01246899999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 367 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva 367 (389)
|..+... +++|.+|++.+.....++.+|... + ...+.++
T Consensus 242 lyv~~~~----------~~~I~v~~i~~~~~~~~~~~~~~~------------~-------------------~~p~~~~ 280 (330)
T PRK11028 242 LYACDRT----------ASLISVFSVSEDGSVLSFEGHQPT------------E-------------------TQPRGFN 280 (330)
T ss_pred EEEecCC----------CCeEEEEEEeCCCCeEEEeEEEec------------c-------------------ccCCceE
Confidence 9997543 589999998654333355555410 0 1345689
Q ss_pred ECCCCCEEEEecC-CCcEEEcc
Q 016446 368 YDEERNEIYTGNR-HGLVHVWS 388 (389)
Q Consensus 368 fSpdg~~LaSgs~-D~tIrlW~ 388 (389)
|+|||++|+.++. +++|.+|+
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEE
Confidence 9999999998886 89999995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=173.24 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=206.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---CcceeEe-eecccC-----cee-EEE-----e
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFALFE-SESLKW-----PGF-VEF-----D 109 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l~~-~~~~~~-----~~~-v~F-----s 109 (389)
+.....-|||||..|.+- +.| ...++|.++.--.. .....|. +..... +.. +-+ .
T Consensus 50 nf~kgckWSPDGSciL~~----sed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSL----SED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred hhhccceeCCCCceEEee----ccc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 456677899999999884 455 45555555321110 0111121 010000 111 111 2
Q ss_pred cCCCeEEEEecCCCeEEEEeCCCCeEEEEecC----C---cEEEEEEc-CCceEEEEecCCCCeeEEEEEc-CCCeEEEE
Q 016446 110 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---HVQEIKIS-PGIMLLIFNRSSSHVPLKILSI-EDGTVLKV 180 (389)
Q Consensus 110 ~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~----~---~V~~vafS-~g~~la~~~~~s~d~tiklWd~-~tG~~l~t 180 (389)
.|+-.+.|+.+.|.-|++||..+|++..+++. + .-.+++|| ||.+|.++ .-.+||++|+ +.|+-...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcc
Confidence 48889999999999999999999998877763 2 34689999 78888654 3479999999 66653322
Q ss_pred ---Ee----ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeE
Q 016446 181 ---FY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTV 251 (389)
Q Consensus 181 ---l~----~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tI 251 (389)
+. +..+.+..++|+|.+...++.+++-.++-|++-..+++++++-||.+.|+-+.|.+||+.|.||+ |-.|
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 21 22456788999966667888899999999999999999999999999999999999999999996 9999
Q ss_pred EEEeCC--CcEEEEeccCcCCcCCCCeeEEEE--CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCC
Q 016446 252 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 326 (389)
Q Consensus 252 klWd~~--G~~l~tl~gh~~~~~~~~v~sv~f--SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~ 326 (389)
-.||++ ++.+..|++|..-.+ ..|.| -|+|++||||+. ||.|++||++. |+.+..+..|.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TN----QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTN----QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred EEEeehhccchhhhhhhhccCcc----ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCccccccccc
Confidence 999995 889999999976321 34555 689999999866 49999999998 88777777777
Q ss_pred CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 327 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
.-|+.|+|+|-=.+||++|-.
T Consensus 341 ----------------------------------d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 ----------------------------------DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ----------------------------------ccccceecCcccceeeeccCc
Confidence 578899999999999998853
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=169.76 Aligned_cols=231 Identities=13% Similarity=0.176 Sum_probs=184.7
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCC--EEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~--~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
..+..+.-++-++|+++.|-||++||+.+.+.+..|--| ++.|+++-|.|+-. -|+| +++| +.|-+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~H-agsitaL~F~~~~S~shLlS----~sdD------G~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSH-AGSITALKFYPPLSKSHLLS----GSDD------GHIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceecc-ccceEEEEecCCcchhheee----ecCC------CcEEEE
Confidence 356778888999999999999999999999999998876 59999999999874 6888 5578 677777
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC-CceEEEEe
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~-g~~la~~~ 159 (389)
++..=++... + ..+.+.+..++.. |.|++-.|-+.|+.+|+|||-+|+--+.+. .+.-..|.|+| |.+++...
T Consensus 113 ~~~~W~~~~s--l--K~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 113 RVGSWELLKS--L--KAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EcCCeEEeee--e--cccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 7532222111 1 2344557789997 899999999999999999999999655554 23333499995 88787764
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE--c
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF--L 237 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f--s 237 (389)
+. .|-+|.+.+-.+..++... .++..+-|. +++++++|..|++|++||-.++.++..+.+|...|.++++ .
T Consensus 188 ~~----~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RN----KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred cc----EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 44 6889999887777766622 335555553 4789999999999999999999999999999999999986 6
Q ss_pred CCCcEEEEEc-CCeEEEEeCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~ 257 (389)
|++.+|+|+| ||.||+||++
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCceEEEEeccCceEEEEEcc
Confidence 8999999998 9999999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-21 Score=198.28 Aligned_cols=195 Identities=12% Similarity=0.188 Sum_probs=165.9
Q ss_pred cEEEEEEc--CCceEEEEecCCCCeeEEEEEcCC---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 143 HVQEIKIS--PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 143 ~V~~vafS--~g~~la~~~~~s~d~tiklWd~~t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
...+|+++ +.+.||+++.. +-|-+||+.- .+.+..|..|...+..+.|++..+.+|++||.|++||+||++.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~n---G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTN---GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ehhhcccccchhhhheeecCC---CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 45667777 68899988655 6899999976 5677889999999999999977788999999999999999999
Q ss_pred CeEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 218 AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
..-..++.+....|+.|.|+| ++..|+++. .|.+++||++ .+|..-|..|.++ |..+.++|++.+||+|++
T Consensus 166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 166 KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR 240 (839)
T ss_pred ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC
Confidence 999999999999999999998 688899998 8899999995 6788899999998 799999999999999865
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
|++|||||..+++.-..+.-|+. .+|..|.|=|+.+
T Consensus 241 -----------DK~vkiWd~t~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~ 276 (839)
T KOG0269|consen 241 -----------DKMVKIWDMTDSRAKPKHTINTI---------------------------------APVGRVKWRPARS 276 (839)
T ss_pred -----------CccEEEEeccCCCccceeEEeec---------------------------------ceeeeeeeccCcc
Confidence 59999999876553322222332 5899999999986
Q ss_pred -EEEEec--CCCcEEEccC
Q 016446 374 -EIYTGN--RHGLVHVWSN 389 (389)
Q Consensus 374 -~LaSgs--~D~tIrlW~~ 389 (389)
.|||.+ .|-.|++||.
T Consensus 277 ~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred chhhhhhccccceEEEEee
Confidence 577777 6889999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=167.14 Aligned_cols=239 Identities=11% Similarity=0.122 Sum_probs=180.0
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.|.+|.|+ |.++.|+-+|.||++||+|+..-++...+. +..+.+++|-|...++++ +-|+.||+.|+.+|+..+.
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45679999 777777777899999999998777777775 689999999987777776 4568999999999988876
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 257 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-- 257 (389)
.. |...+..|.++ +-.+.+++||+|++||+||.+...+..++.... .|.+. +-.|..|+.|. |..|-+||+.
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccCc-eEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 65 77899999998 667899999999999999998755555544333 55544 44566677765 9999999995
Q ss_pred CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----eEEEEecCCCCCCCccc
Q 016446 258 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKINATNCSPKVDD 333 (389)
Q Consensus 258 G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg----~~l~tl~gH~~~~~~~~ 333 (389)
.+..+.-+ .... ..+++|++-|++.=.|.+|-| |-|-+=.+... +--..++.|...
T Consensus 166 ~~~~q~re-S~lk---yqtR~v~~~pn~eGy~~sSie-----------GRVavE~~d~s~~~~skkyaFkCHr~~----- 225 (323)
T KOG1036|consen 166 DEPFQRRE-SSLK---YQTRCVALVPNGEGYVVSSIE-----------GRVAVEYFDDSEEAQSKKYAFKCHRLS----- 225 (323)
T ss_pred cchhhhcc-ccce---eEEEEEEEecCCCceEEEeec-----------ceEEEEccCCchHHhhhceeEEeeecc-----
Confidence 33332111 1111 127999999988877877764 77777666555 334567888721
Q ss_pred ccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+++. +. -+|++++|+|--+++|||+.||.|-+||.
T Consensus 226 ------------~~~~~-~~-------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 226 ------------EKDTE-II-------YPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ------------cCCce-EE-------EEeceeEeccccceEEecCCCceEEEccC
Confidence 11121 11 49999999999999999999999999983
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=167.51 Aligned_cols=321 Identities=12% Similarity=0.099 Sum_probs=233.9
Q ss_pred cccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 3 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 3 ~~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
|.-|.++.|. +.-++++..+|+|-+|+..+.+..++... |...|.++-.-.+|. |.| |+.| |.+-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~a-H~ggv~~L~~lr~Gt-llS----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHA-HDGGVFSLCMLRDGT-LLS----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeee-cCCceEEEEEecCcc-Eee----cCcc------ceEEec
Confidence 3568999999 66699999999999999998899999885 569999999999998 455 6777 777777
Q ss_pred Eec--------------------cCCCC------Ccc-------eeEeeecccC---ceeEEEecCCCeEEEEecCCCeE
Q 016446 82 YIR--------------------RGKPD------SGF-------ALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 82 ~i~--------------------~g~~~------~~~-------~l~~~~~~~~---~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
|=. .|+.+ ... .-|+...++| .+.+|-. |+-.+++++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 621 11111 000 0122223333 3347886 778889999999999
Q ss_pred EEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 126 KVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 126 klWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
+||+ .-+++.+-. .+.+.+++|.|.+.+|.+... +-.-+.|+++-.++ ++..-..++..|.|+ |+|..||.+
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~---G~w~V~d~e~~~lv-~~~~d~~~ls~v~ys-p~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTAT---GRWFVLDTETQDLV-TIHTDNEQLSVVRYS-PDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeecc---ceEEEEecccceeE-EEEecCCceEEEEEc-CCCCEEEEe
Confidence 9999 666776665 789999999985588887555 56778899984444 444336788999998 899999999
Q ss_pred eCCCcEEEEECC-CCeEEEEcc-cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc---------------EEEEecc
Q 016446 205 QENENLQILDVR-NAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---------------LVTSFED 266 (389)
Q Consensus 205 s~D~tIklWd~~-tg~~~~~l~-gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~---------------~l~tl~g 266 (389)
+.|+.|.|+-+. +|....... -|..++..+.||+|+++|.+-+ |-.|-.|....- |.--|+-
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999886 455544432 2337899999999999999999 999999953221 1111110
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---EEEEecCCCCCCCcccccCCCCCCCc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
-.. ..+..++.++-|.+.++||+|-+ -|+|+|+.-.--+ .-+.+.||.
T Consensus 546 ~g~-s~~t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs----------------- 596 (626)
T KOG2106|consen 546 FGG-SDGTDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHS----------------- 596 (626)
T ss_pred ecc-cCCchHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeecccc-----------------
Confidence 000 01123678888889999998743 4999999743111 223444554
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+|+|.-+.+.|.|.+.|..|-.|+.
T Consensus 597 -----------------~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 -----------------SHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -----------------ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 68999999999999999999999999974
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=175.65 Aligned_cols=232 Identities=15% Similarity=0.201 Sum_probs=175.8
Q ss_pred ccEEEEEecCceEEEEeccc--cee--------eeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEe
Q 016446 13 RDIVFALAHSGVCAAFSRET--NRR--------ICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~t--g~~--------l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
-.+||+.+.++.+.+||..+ ++. -..|.||+. .=.++.||+.-+ +|++ +++| +++.+|
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls----~~~d------~~i~lw 205 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLS----GSDD------HTICLW 205 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEee----ccCC------CcEEEE
Confidence 46899999999999999753 222 226888874 467899999855 5666 5688 899999
Q ss_pred EeccCCC----CCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC--CeEEEEec--CCcEEEEEEcC--
Q 016446 82 YIRRGKP----DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKHVQEIKISP-- 151 (389)
Q Consensus 82 ~i~~g~~----~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~--g~~l~tl~--~~~V~~vafS~-- 151 (389)
|+..... ...+..|. .+...+..|+|.+-+..+++|++.|+.+.|||+.+ -++..+.+ ...|++|+|+|
T Consensus 206 di~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred eccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9944332 22233443 44445677999977889999999999999999984 33444443 57899999995
Q ss_pred CceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCe-EEEEeCCCcEEEEECCC-Ce---------
Q 016446 152 GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRN-AE--------- 219 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~-l~~~s~D~tIklWd~~t-g~--------- 219 (389)
+-.||++ |.|+||+|||+++ -+++.+|.+|...|..|.|+ |+.+. ||+++.|+.+.+||+.. |+
T Consensus 285 ~~ilAT~---S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS-Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 285 EFILATG---SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS-PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CceEEec---cCCCcEEEeechhcccCceeccCCCcceEEEEeC-CCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 6666654 5679999999986 46889999999999999999 55555 45567999999999964 22
Q ss_pred ----EEEEcccCCCceEEEEEcCCCcE-EEEEc-CCeEEEEeCCCcE
Q 016446 220 ----LMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFRGEL 260 (389)
Q Consensus 220 ----~~~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIklWd~~G~~ 260 (389)
++-+=.||...|..+.|+|.-.. ++|.+ |+.++||....-+
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 22334799999999999997664 55667 9999999986543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=170.52 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=175.3
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCC
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS 163 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~ 163 (389)
++|+.+...+++. .|.+.+..++|+|-|.+.|||||.|.+|+||++-.+-+.+.+
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------ 120 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------ 120 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------------------
Confidence 4687766666665 566677889999778899999999999999998433221111
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
+ +....|.+|+.+|.-|++++.-...|++++.|.+|+|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 121 ----------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 121 ----------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred ----------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 1 67788999999999999996556788889999999999999999999888 99999999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC---CeE
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKC 318 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t---g~~ 318 (389)
++.+ |+.|||||.. |+.+..-.+|.+.-+ ..+.|-.+|+ |++.+.. -.++..|-|||-.+ .--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k~----~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP----ARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCCc----ceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999997 999998888887532 5677889999 4544443 24678999998543 334
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEcc
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 388 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~ 388 (389)
+++|..- +.|.==.|+||-++|+-++ .|+.||.+.
T Consensus 257 ~~elDtS-----------------------------------nGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTS-----------------------------------NGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccC-----------------------------------CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4555433 3677778999999887655 799999764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-19 Score=175.54 Aligned_cols=228 Identities=11% Similarity=0.123 Sum_probs=170.5
Q ss_pred CCeEEEEecCCCeEEEEeCCC---CeEEEEe--------------------cCCcEEEEEEc-C-CceEEEEecCCCCee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN---YTMLYSI--------------------SDKHVQEIKIS-P-GIMLLIFNRSSSHVP 166 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~---g~~l~tl--------------------~~~~V~~vafS-~-g~~la~~~~~s~d~t 166 (389)
-|.++|-|..|.+|.||||.= -.+..+| |.+.|.++++. . -..||++ |.|+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg---saD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG---SADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec---CCCce
Confidence 378999999999999999842 1222333 12357788888 3 6677654 67799
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE-E
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-T 245 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la-S 245 (389)
|+|||+.+|+|-+++++|++.|..++|.+..++.|++||+|++++|.|++.-.+...--.-...|..|+|.|.....+ .
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 999999999999999999999999999988889999999999999999984222111111235789999988776543 4
Q ss_pred Ec-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 246 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 246 ~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+. ||+++-.|++ |+++.++..|... |.++.+++.-..+.+. +|.|++||||++.- ..-...
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t----------~s~d~~Vklw~~~~-~~~~~v 411 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLST----------ASTDKVVKLWKFDV-DSPKSV 411 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceee----------ccccceEEEEeecC-CCCccc
Confidence 44 9999999995 8999999999987 7999999876654442 24569999999763 222222
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~~ 389 (389)
..|.- .+....|.++.|+-- +||.|+..+.+|+||+
T Consensus 412 ~~~~~-------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHSF-------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccc-------------------------------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 33431 113566778888764 6888888889999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=165.40 Aligned_cols=212 Identities=11% Similarity=0.104 Sum_probs=164.4
Q ss_pred EEecCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe-------EEEEEe--------ecCCceeEEEEEecCCC
Q 016446 137 YSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFY--------HLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 137 ~tl~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~-------~l~tl~--------~~~~~~~~v~f~~~~~~ 199 (389)
...|++.|+++.+-+ |++++++ +.|+.|-+||+++-. ..+... +|-=.+.++.+-|.|.+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSG---gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSG---GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeec---CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 344678898988884 8888875 556899999998633 222221 33344677788877889
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC---cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg---~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.+.++|.|+|+|+||..|-+..-.|+= .+.|++-++||=. -++|+|. |-.|+|.|+. |.+-.+|.||...
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~---- 190 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG---- 190 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc----
Confidence 999999999999999998777666543 3468888888843 4788887 8899999997 9999999999876
Q ss_pred CeeEEEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 275 NTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 275 ~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
|.+|.+||...++ |+|| .||+||+||+..- -|..+|.-|+. +..-+
T Consensus 191 -vlaV~Wsp~~e~vLatgs-----------aDg~irlWDiRrasgcf~~lD~hn~--------------------k~~p~ 238 (397)
T KOG4283|consen 191 -VLAVEWSPSSEWVLATGS-----------ADGAIRLWDIRRASGCFRVLDQHNT--------------------KRPPI 238 (397)
T ss_pred -eEEEEeccCceeEEEecC-----------CCceEEEEEeecccceeEEeecccC--------------------ccCcc
Confidence 8999999988875 5554 4699999999865 69999999982 11112
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+-..|-..|.+++|+.||..|++.+.|..+|+|+
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 223334446999999999999999999999999997
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=171.77 Aligned_cols=195 Identities=13% Similarity=0.196 Sum_probs=157.8
Q ss_pred CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCC----------------CeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 142 KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIED----------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 142 ~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~t----------------G~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
+.|+.|+-++ ...++++= +.-+.|++||+.. -+.+.++.+|.+.-+.++|++.-.+.|++
T Consensus 152 g~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 4566666662 34443332 3347899999852 34677888998888999999655678888
Q ss_pred EeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-C---cEEEEeccCcCCcCCC
Q 016446 204 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDC 274 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~ 274 (389)
|---+.|++|...+|.- .+-|.+|+..|..+.+||. ...|||+| |++|||||++ | .|+.+ +.|..-
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD---- 304 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD---- 304 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc----
Confidence 88889999999999874 3346789999999999994 55788888 9999999997 7 46666 788775
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC---CeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t---g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
|+-|.|+.+-.+||||+. ||+++|||+++ |+.+++++-|.
T Consensus 305 -VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk------------------------- 347 (440)
T KOG0302|consen 305 -VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHK------------------------- 347 (440)
T ss_pred -eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEecc-------------------------
Confidence 899999999999999865 49999999975 88899999998
Q ss_pred eecccccccCCEEEEEECCC-CCEEEEecCCCcEEEccC
Q 016446 352 IRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpd-g~~LaSgs~D~tIrlW~~ 389 (389)
.+|++|.|+|. ...|+.++.|..|.|||.
T Consensus 348 ---------~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 348 ---------APITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ---------CCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 59999999985 467888899999999984
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=168.81 Aligned_cols=236 Identities=10% Similarity=0.058 Sum_probs=167.8
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.+||.+ |...+.+..+. +.+.+.+|||||+.|+.++.. +.+ .++.++++..|+. ..+.. ..++.
T Consensus 180 ~l~~~d~d-g~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~-~g~------~~i~i~dl~~G~~---~~l~~--~~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFE-SGR------SALVIQTLANGAV---RQVAS--FPRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeecCC-CceeeeEEcCCCCEEEEEEec-CCC------cEEEEEECCCCCe---EEccC--CCCCc
Confidence 68888886 76667776654 789999999999999987643 233 5788899888864 22321 22344
Q ss_pred eeEEEecCCCeEEEEe-cCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~-s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
..++|| |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|| +|+.|+..+..+....|.++|+.+|+.
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 568998 999988865 3344 58899998887654333 3467889999 588887765333223455557777765
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEe-C--CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCe---E
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s-~--D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~t---I 251 (389)
+.+..+.+......|+ |++.+|+..+ . ...|.+||+++|+.......+ ...+..|+|||+.|+.++ |+. +
T Consensus 324 ~~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 4444444555678887 7888888865 2 246889999999865543332 345788999999999987 663 6
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
.+++++|+..+.|.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888899988999888765 57788887
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=170.44 Aligned_cols=232 Identities=18% Similarity=0.267 Sum_probs=178.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec--CCcEEEEEEcC-Cc-eEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GI-MLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~--~~~V~~vafS~-g~-~la~~~~~s~d~tiklWd 171 (389)
.-+.|.+|.|. |.-++|..|+.|+++||+.+ +|+ .+++++ .-.|.+..|.| |. .++++ +....+..||
T Consensus 212 s~~~I~sv~FH-p~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFH-PTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---GRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEec-CCCceEEEecCCCcEEEEEe-cCccChhheeeeeccCccceeeecCCCceEEEec---ccceEEEEee
Confidence 33457789997 99999999999999999998 555 566665 57999999995 66 55554 4448999999
Q ss_pred cCCCeEEEE--EeecCCce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-
Q 016446 172 IEDGTVLKV--FYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 172 ~~tG~~l~t--l~~~~~~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s- 247 (389)
+++++..+. +.++.... .....+ +++..||..+..|-|.|--..|++.+.+++ -.+.|..++|+.||+.|..++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC
Confidence 999887653 22332222 223333 778899999999999999999999988876 345799999999999888776
Q ss_pred CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC------CeEEE
Q 016446 248 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT------GKCLA 320 (389)
Q Consensus 248 D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t------g~~l~ 320 (389)
+|.|-+||++ -.|++++.+...-+ =.+++.|++|+|||+||.. |-|+|+|.++ -+.+.
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~----gts~~~S~ng~ylA~GS~~-----------GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVH----GTSLCISLNGSYLATGSDS-----------GIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccc----eeeeeecCCCceEEeccCc-----------ceEEEeccchhhccCCCCchh
Confidence 9999999997 88999998765432 3799999999999998764 9999999542 11222
Q ss_pred EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC--CCcEEE
Q 016446 321 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR--HGLVHV 386 (389)
Q Consensus 321 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~--D~tIrl 386 (389)
++..- .-.|+++.|+||+|+||-+|+ +..+||
T Consensus 430 ~~dNL----------------------------------tt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 430 TVDNL----------------------------------TTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhhhh----------------------------------heeeeeeeeCcchhhhhhhhhccccceEE
Confidence 22111 148999999999999998884 566665
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=178.21 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=191.7
Q ss_pred ccEEEEEecCceEEEEecccc------eeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 13 RDIVFALAHSGVCAAFSRETN------RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg------~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
..+||.+.++|-|.|+|...= +.|+.+..| .+.|..+.+-| |+ .|+++ +-| +++++||+++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wap-ge~~lVsa----sGD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAP-GESLLVSA----SGD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCC-CceeEEEc----cCC------ceeeeeeecc
Confidence 679999999999999997531 225566665 59999999999 66 55564 355 8999999999
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEecCC----cEEEEEEcCCceEEEEec
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDK----HVQEIKISPGIMLLIFNR 160 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~~~----~V~~vafS~g~~la~~~~ 160 (389)
+++......+ +|.+.+.+++|.+-|-..+++|+.|+.|.|||+. ++.-....... ....-- -|.+-+.
T Consensus 132 s~l~G~~~~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~---- 204 (720)
T KOG0321|consen 132 SRLVGGRLNL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLK---- 204 (720)
T ss_pred ceeecceeec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhh----
Confidence 9986555344 4566677899995556678999999999999974 22100000000 000000 1222221
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEEECCCCeE------EEEc--ccC---C
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAEL------MEVS--RTE---F 228 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklWd~~tg~~------~~~l--~gh---~ 228 (389)
.-++=|-...+. +. +.|..|.| .|+..||+++. |++||+||++...+ +... ..| .
T Consensus 205 ----kr~~k~kA~s~t----i~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 205 ----KRIRKWKAASNT----IF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred ----ccccccccccCc----ee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 123333333221 11 23455666 57788888774 99999999987544 2222 223 1
Q ss_pred CceEEEEEcCCCc-EEEEEcCCeEEEEeCCC---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 229 MTPSAFIFLYENQ-LFLTFRNRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 229 ~~v~sv~fspdg~-~laS~sD~tIklWd~~G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
-.+..+..-.-|. ++|++.|++|-.||+.+ ..+..+.||...- .+|. -..|||+++|+||+.|
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s--f~vk-s~lSpd~~~l~SgSsd---------- 338 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS--FYVK-SELSPDDCSLLSGSSD---------- 338 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce--eeee-eecCCCCceEeccCCC----------
Confidence 1233333333344 55555699999999853 2455666665321 1222 3469999999998765
Q ss_pred CCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC--CCCEEEEecCC
Q 016446 305 AGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRH 381 (389)
Q Consensus 305 D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp--dg~~LaSgs~D 381 (389)
.-+.+|.+.+-+ ....|.||+ ..|++|.+.| ++. +|++|+|
T Consensus 339 -~~ayiw~vs~~e~~~~~l~Ght----------------------------------~eVt~V~w~pS~~t~-v~TcSdD 382 (720)
T KOG0321|consen 339 -EQAYIWVVSSPEAPPALLLGHT----------------------------------REVTTVRWLPSATTP-VATCSDD 382 (720)
T ss_pred -cceeeeeecCccCChhhhhCcc----------------------------------eEEEEEeeccccCCC-ceeeccC
Confidence 899999998744 456678887 6899999876 445 5555999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
.++++|+.
T Consensus 383 ~~~kiW~l 390 (720)
T KOG0321|consen 383 FRVKIWRL 390 (720)
T ss_pred cceEEEec
Confidence 99999974
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-18 Score=170.71 Aligned_cols=278 Identities=10% Similarity=0.067 Sum_probs=196.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCC-cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~-~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
+-.++..-++||||...-...-.+..|. ...+.++-|+..+. |+.+|. +.| ..+++|. +.|+. ...++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 5556667789999975322221222222 23589999999876 666653 344 5666776 55652 11221
Q ss_pred EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEE
Q 016446 95 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 95 ~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd 171 (389)
-..........|+-. .-..++++|+..++|||||+..-.+.+.++ ...|..|.+. .+.+||+.+-+ +.|-|-.
T Consensus 74 ~~k~~gd~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g---Gdiiih~ 149 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG---GDIIIHG 149 (673)
T ss_pred eeccccchHHHHhhh-hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC---CcEEEEe
Confidence 110000011123221 123799999999999999997444556665 4689999999 79999887544 6788999
Q ss_pred cCCCeEEEEEeec-CCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCc-EEEEEc
Q 016446 172 IEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQ-LFLTFR 247 (389)
Q Consensus 172 ~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~-~laS~s 247 (389)
+.|++.-.+|... ...++-+.|+ +....++. .+.+|+|.|||++...+ ....+.|..+-..|+|+|-.. +|+|.+
T Consensus 150 ~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 150 TKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred cccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 9999999999844 4556788898 44555554 78999999999987665 455788999999999999665 556668
Q ss_pred -CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecC
Q 016446 248 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINA 324 (389)
Q Consensus 248 -D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~g 324 (389)
|..|-++|.. .+...+|.-. .+ ..+|+|+|+|.||+.|+. .|.|.-+|++. .+.++++.+
T Consensus 229 ~Dkki~~yD~~s~~s~~~l~y~-~P-----lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDRLTYS-HP-----LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeecccccccceeeec-CC-----cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceEeee
Confidence 9999999996 5555566532 22 589999999999999854 59999999974 557899999
Q ss_pred CC
Q 016446 325 TN 326 (389)
Q Consensus 325 H~ 326 (389)
|.
T Consensus 292 h~ 293 (673)
T KOG4378|consen 292 HD 293 (673)
T ss_pred cc
Confidence 98
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=172.84 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=200.5
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccce----eee---eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNR----RIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~----~l~---tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
|..+..+ .+.|.++. -|-||+||+. +. ++. -+|. .+.|++.-+.|||.+|+. |++- -
T Consensus 422 VcAvtIS~~trhVyTgG-kgcVKVWdis-~pg~k~PvsqLdcl~r--dnyiRSckL~pdgrtLiv----GGea------s 487 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG-KGCVKVWDIS-QPGNKSPVSQLDCLNR--DNYIRSCKLLPDGRTLIV----GGEA------S 487 (705)
T ss_pred EEEEEecCCcceeEecC-CCeEEEeecc-CCCCCCccccccccCc--ccceeeeEecCCCceEEe----cccc------c
Confidence 5555566 66677765 5789999984 32 111 2343 478999999999999999 6776 6
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCc
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGI 153 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~ 153 (389)
++.|||+..-.+ ..+.-....--.-++++.| ||.+...++-.||.|+|||+.+..+++.|++ +.+.+|.+| +|.
T Consensus 488 tlsiWDLAapTp--rikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 488 TLSIWDLAAPTP--RIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred eeeeeeccCCCc--chhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence 667888866544 1111000000112458897 9999999999999999999999999999975 689999999 899
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 233 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s 233 (389)
.|-++ +-|.|||-||+++|+.++.-.. ...|+++-+. |.++.++.|=+++.+-|-.. ++.-...|.-|..-|-+
T Consensus 565 klWTG---GlDntvRcWDlregrqlqqhdF-~SQIfSLg~c-P~~dWlavGMens~vevlh~-skp~kyqlhlheScVLS 638 (705)
T KOG0639|consen 565 KLWTG---GLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYC-PTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLS 638 (705)
T ss_pred eeecC---CCccceeehhhhhhhhhhhhhh-hhhheecccC-CCccceeeecccCcEEEEec-CCccceeecccccEEEE
Confidence 99876 5678999999999987765432 2667888876 77899999999999988877 45555567789999999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
+.|.+-|+.++|.+ |+-+-.|..- |.-+-..+... . |.+..+|.|.+||++||.|
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-s-----VlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-S-----VLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccccC-c-----ceeeeeccCceEEEecCCC
Confidence 99999999999998 9999999986 87655444332 2 7899999999999999876
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=167.18 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=210.8
Q ss_pred eeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccC-CCCCcceeEeeecccCceeEEEecCCCe
Q 016446 37 CFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g-~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
++.-..+...|.+++|.|--+ .|+.+ |.. ..+|-+|++.+. +-..+..+|+ .+.+.|..+.|+|.|-.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~---GdK------~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAV---GDK------GGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTS 248 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEE---ccC------CCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChh
Confidence 344444568999999999855 45442 323 378889998533 3334455776 45555778999976667
Q ss_pred EEEEecCCCeEEEEeCCCCe--EEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE-EEEEeecCCce
Q 016446 115 VLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV-LKVFYHLLHRN 188 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~--~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~-l~tl~~~~~~~ 188 (389)
.+.+.|.|||||+=|++++. .++++.. .+..++.|+ ..+.++.+. .- +-..+||++++.. ...+.-|...|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~-G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NV-GNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cc-cceEEEEeecCCccchhhhhhhccc
Confidence 78889999999999998766 5667743 467889999 555554542 22 3788999998665 55666777899
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCC--eE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--C---
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--- 258 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G--- 258 (389)
.+|+++|..+..||++|.|+|.||||++.- +. +--...|...|.++.|||.|=.|++-+ |.+|||||.. +
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 999999888899999999999999999862 22 223356999999999999887788888 9999999983 2
Q ss_pred cEEEEeccCcCCc-CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCC
Q 016446 259 ELVTSFEDHLLWH-PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 337 (389)
Q Consensus 259 ~~l~tl~gh~~~~-~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~ 337 (389)
+.+.++. |.... +=....-.+|.||-.++++|-.. .-|-+.|-..||.+..|-+-..
T Consensus 406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----------r~IDv~~~~~~q~v~el~~P~~---------- 463 (498)
T KOG4328|consen 406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----------RPIDVFDGNGGQMVCELHDPES---------- 463 (498)
T ss_pred Cccceee-ccCcccccccchhheeCCCccEEEEeccC-----------cceeEEcCCCCEEeeeccCccc----------
Confidence 3333433 33211 00113567899999999998654 5699999777777777644331
Q ss_pred CCCCCccccccccceecccccccCCEEE-EEECCCCCEEEEec-CCCcEEEccC
Q 016446 338 SSTGKSKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~V~s-vafSpdg~~LaSgs-~D~tIrlW~~ 389 (389)
..|.+ ..|+|=+..|++|+ .-|.|.||-+
T Consensus 464 -----------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 -----------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred -----------------------cccccceeecccccceeccCCccceEEEEec
Confidence 12333 58999999666655 6788988853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=162.62 Aligned_cols=234 Identities=14% Similarity=0.162 Sum_probs=179.0
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCC--------CeEE----EEec---CCcEEEEE-Ec------C-CceEEEEec
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTML----YSIS---DKHVQEIK-IS------P-GIMLLIFNR 160 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~--------g~~l----~tl~---~~~V~~va-fS------~-g~~la~~~~ 160 (389)
....+| |||.-|.+-+.|..+++|++.. +-.. .+++ +..|.+.. +| | -.+.|++
T Consensus 53 kgckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s-- 129 (406)
T KOG2919|consen 53 KGCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS-- 129 (406)
T ss_pred ccceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec--
Confidence 358898 9999999999999999999731 1111 1222 45565533 21 4 3344443
Q ss_pred CCCCeeEEEEEcCCCeEEEEEe--ecCCce---eEEEEEecCCCeEEEEeCCCcEEEEEC-CCCeEEEE--c-----ccC
Q 016446 161 SSSHVPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELMEV--S-----RTE 227 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~--~~~~~~---~~v~f~~~~~~~l~~~s~D~tIklWd~-~tg~~~~~--l-----~gh 227 (389)
+.|.+|+|||..||++...+. .|+..+ .+++|+ |||++|.+ +...+||+.|. +.|.-... . .|.
T Consensus 130 -sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 -SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred -cccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 567999999999999998876 455555 789998 67766654 57889999999 66653222 1 233
Q ss_pred CCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
..-+..++|+| +.+++|.++ -+++-|+.-. ++.+.+|-||.+. |.-+.|.|||..|.||++-
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk---------- 271 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK---------- 271 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------
Confidence 56788899999 555899998 9999999987 7899999999987 8999999999999999875
Q ss_pred CCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 305 AGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 305 D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
|..|-.||++. ++.+..|.+|.+. |+ ++| -....|+|++||||+.||.
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~--------------------TN----------QRI-~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGD--------------------TN----------QRI-LFDLDPKGEILASGDTDGS 320 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccC--------------------cc----------ceE-EEecCCCCceeeccCCCcc
Confidence 57899999975 7788999999731 11 344 3677899999999999999
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
|++||+
T Consensus 321 V~vwdl 326 (406)
T KOG2919|consen 321 VRVWDL 326 (406)
T ss_pred EEEEec
Confidence 999996
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=159.44 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=204.1
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
+-+||...+ -.++-|||.|..||+ |-.| ..+-|||+.+-.. ++ .++ .|...+.++++| +||+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAv----Gc~n------G~vvI~D~~T~~i--ar-~ls-aH~~pi~sl~WS-~dgr 78 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAV----GCAN------GRVVIYDFDTFRI--AR-MLS-AHVRPITSLCWS-RDGR 78 (405)
T ss_pred hceeccCCc---cceEEeccCcceeee----eccC------CcEEEEEccccch--hh-hhh-ccccceeEEEec-CCCC
Confidence 445555443 589999999999999 5566 7788999876554 12 222 344556789998 9999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCC--eEEEEEe-ecCCce
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY-HLLHRN 188 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG--~~l~tl~-~~~~~~ 188 (389)
.|.++|.|..|++||+..|.+++.+. ...||.+.|.| ..+.+++--.. .-.+-++..+ .+|-+=. +....+
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~---sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE---SPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC---CcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999999999998887 78999999996 22332221111 1222333221 1221100 111111
Q ss_pred eE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-----C--
Q 016446 189 KK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 258 (389)
Q Consensus 189 ~~-v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s-D~tIklWd~~-----G-- 258 (389)
.+ ..|. +.|++|++|-.-|.+-++|..|-+|+..++--. ..|..+.|+..|+.|+.-. |++||.++++ |
T Consensus 156 as~~~fd-r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVFD-RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ccccccc-CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 11 1233 568899999999999999999999988877665 7899999999999999987 9999999863 2
Q ss_pred -cE--EEEec---cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 259 -EL--VTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 259 -~~--l~tl~---gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+. .+.|+ ....| +.+.||.||.|++.|+.- -..+.||.-..|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~~----------aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSAR----------AHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEecccc----------ceeEEEEecCCcceeeeecCCch-----
Confidence 11 11111 22334 689999999999988753 47899999999999999988652
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+..-.|.+.|=...|+|- .-|+|.+|.
T Consensus 294 ----------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 ----------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred ----------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 345567889999999988 788999995
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=166.54 Aligned_cols=226 Identities=14% Similarity=0.194 Sum_probs=170.8
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEe---ecC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLL 185 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~~~ 185 (389)
..+||.|+.-|.|||-|+.++++...+ |+..|++++|.| -++++++ |.|.+|||||++++.|+..|- +|-
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccCCeEEEEeccccccc
Confidence 458999999999999999999987555 678999999996 3477665 556899999999999999985 788
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----------------------------ccCCCceEEEEEc
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----------------------------RTEFMTPSAFIFL 237 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l----------------------------~gh~~~v~sv~fs 237 (389)
++|.+|.|+ +++++|++++.|++||+|++...+...-+ .-|...|-.|.|-
T Consensus 182 deVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 899999998 78999999999999999999854321111 1133333333332
Q ss_pred CCCcEEEEEc-CCeEEEEeC-C-CcE---------EEEeccCcCCcCCCCeeEEEEC--CCCCEEEEEecCCCcccccCC
Q 016446 238 YENQLFLTFR-NRTVAVWNF-R-GEL---------VTSFEDHLLWHPDCNTNNIYIT--SDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~-~-G~~---------l~tl~gh~~~~~~~~v~sv~fS--pdG~~laS~s~D~~~~~~~~s 303 (389)
|.+++|=| ++-|-.|.. + ++- -.|.-++- ..+.|.+|-+.|+ |-++.||.|...
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~-~~~~c~iWfirf~~d~~~~~la~gnq~--------- 328 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF-DYPMCDIWFIRFAFDPWQKMLALGNQS--------- 328 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe-ccCccceEEEEEeecHHHHHHhhccCC---------
Confidence 67888888 999999987 3 332 22333332 3456778887654 569999987653
Q ss_pred CCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 304 SAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 304 ~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
|+|.+||+..-+. ..||.-+. .+ ..|...+||.||.+|+-...|
T Consensus 329 --g~v~vwdL~~~ep~~~ttl~~s~-------------~~-------------------~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 329 --GKVYVWDLDNNEPPKCTTLTHSK-------------SG-------------------STVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred --CcEEEEECCCCCCccCceEEecc-------------cc-------------------ceeeeeeecccCcEEEEEeCC
Confidence 9999999987554 23333222 11 589999999999999999999
Q ss_pred CcEEEcc
Q 016446 382 GLVHVWS 388 (389)
Q Consensus 382 ~tIrlW~ 388 (389)
++|--||
T Consensus 375 ~~Vwrwd 381 (385)
T KOG1034|consen 375 GTVWRWD 381 (385)
T ss_pred CcEEEEE
Confidence 9998887
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=168.82 Aligned_cols=252 Identities=13% Similarity=0.157 Sum_probs=187.6
Q ss_pred eeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EE-EEecCCc---EEEE
Q 016446 77 STKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----ML-YSISDKH---VQEI 147 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l-~tl~~~~---V~~v 147 (389)
.++|||+..-.... -|. +.....+.++.++..+--.+|+-+.|+.|++|. +.|+ ++ ..+.++. |.+.
T Consensus 13 ~~kl~D~s~~~~~~---~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKS---EYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred ceEEeecccccCcc---ccccCCCCCcceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhh
Confidence 47889984433211 111 111112456777633334567778899999998 4555 11 2222332 4445
Q ss_pred EEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 148 KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 148 afS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
.|| .++.++ +..++|||||++.-.|.+.|++|+..|..|.++ -.+++||+.+..|.|-|-++.++..-.+|...
T Consensus 89 s~S--~y~~sg---G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 89 SQS--LYEISG---GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred hcc--eeeecc---CcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceecC
Confidence 555 566544 445899999999878889999999999999998 45899999999999999999999887777554
Q ss_pred -CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCCCc--EEEEeccCcCCcCCCCeeEEEECCC-CCEEEEEecCCCccccc
Q 016446 228 -FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWM 301 (389)
Q Consensus 228 -~~~v~sv~fspdg~~laS~-s-D~tIklWd~~G~--~l~tl~gh~~~~~~~~v~sv~fSpd-G~~laS~s~D~~~~~~~ 301 (389)
.+.|+-+.|+|-.+.|++. + +|+|.|||++|. ...-++.|..+ ...|+|||. ..+|||-+.|
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~D------- 230 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGYD------- 230 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEeccc-------
Confidence 4567789999988876655 7 999999999875 45667789988 479999995 5667776664
Q ss_pred CCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 302 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
..|.++|+...+...+|.... +..+|+|+|+|.+|+.|+..
T Consensus 231 ----kki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 231 ----KKINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred ----ceEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCC
Confidence 899999998877777775533 78899999999999999999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
|.|-.+|.
T Consensus 272 G~~i~YD~ 279 (673)
T KOG4378|consen 272 GELIAYDM 279 (673)
T ss_pred ceEEEEec
Confidence 99988773
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=168.94 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=200.9
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..|+.|+|-|||..|+.+. . ..+.++|...|.+.++ |-. |..-+..||+| .||+..|||+.|+.
T Consensus 13 hci~d~afkPDGsqL~lAA----g-------~rlliyD~ndG~llqt--LKg--HKDtVycVAys-~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA----G-------SRLLVYDTSDGTLLQP--LKG--HKDTVYCVAYA-KDGKRFASGSADKS 76 (1081)
T ss_pred cchheeEECCCCceEEEec----C-------CEEEEEeCCCcccccc--ccc--ccceEEEEEEc-cCCceeccCCCcee
Confidence 3799999999999999852 2 3577899999987332 322 33345789998 89999999999999
Q ss_pred EEEEeCCCCeEEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 125 YKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 125 iklWdl~~g~~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
|-||+-+---.+.--|++.|.++.|+| .+.||+++-. ..-+|..+.-...+ -+ ...++...+|. .||++++.
T Consensus 77 VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V~K-~k-ss~R~~~CsWt-nDGqylal 149 (1081)
T KOG1538|consen 77 VIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSVSK-HK-SSSRIICCSWT-NDGQYLAL 149 (1081)
T ss_pred EEEecccccceeeeccCCeeeEeecCchHHHhhhcchh----hccccChhhhhHHh-hh-hheeEEEeeec-CCCcEEEE
Confidence 999985421122333578999999998 8888877543 46789876533222 21 13566788887 67889999
Q ss_pred EeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCC-----cEEEEEc-CCeEEEEeCCCcEEE---EeccCcCCc
Q 016446 204 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVT---SFEDHLLWH 271 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg-----~~laS~s-D~tIklWd~~G~~l~---tl~gh~~~~ 271 (389)
|-.||||.|=|. +||. ++...|.+.+|++|+|+|.. ..++... .+|+-.+.++|+.+. +|+ ..
T Consensus 150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~----Fd 224 (1081)
T KOG1538|consen 150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN----FD 224 (1081)
T ss_pred eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC----CC
Confidence 999999999986 5553 55566788999999999853 3566665 788888888887653 332 11
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
| ..+..-|+|.|+.-|+. |+-++++- ..|-.+.|+-...
T Consensus 225 P----~CisYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D------------------------- 263 (1081)
T KOG1538|consen 225 P----CCISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQD------------------------- 263 (1081)
T ss_pred c----hhheeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccc-------------------------
Confidence 2 35666789999999865 58999997 6798988886533
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.|||+|+..|+||+.+-|..||||..++
T Consensus 264 ---------~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 264 ---------SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ---------eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 5999999999999999999999998765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-16 Score=157.45 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=143.3
Q ss_pred CCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
..+|.+||.. |...+.+. ...|.+.+|| +|+.||..+..+.+..|.+||+.+|+... +..+.+....++|+ |++
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 3579999984 44444443 4579999999 68889887655556789999999988643 33333455678887 788
Q ss_pred CeEEEE-eCCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCe--EEEEeCC-CcEEEEeccCcCC
Q 016446 199 EKLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 199 ~~l~~~-s~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~t--IklWd~~-G~~l~tl~gh~~~ 270 (389)
.+++.. +.++ .|.+||+.+|++.+ +..|......++|+|||+.|+..+ ++. |.++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888754 5554 69999999998755 455655567889999999888776 555 4445665 543 333322222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 350 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
...++|||||++|+..+.+ +....|.+||+.+|+.. .|. +.
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~~--------~~~~~I~v~d~~~g~~~-~Lt-~~------------------------ 378 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHGS--------GGQYRIAVMDLSTGSVR-TLT-PG------------------------ 378 (433)
T ss_pred -----ccCEEECCCCCEEEEEECC--------CCceeEEEEECCCCCeE-ECC-CC------------------------
Confidence 3478999999999987643 12347999999888764 443 22
Q ss_pred ceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 351 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 351 ~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
....+.+|||||++|+..+.+
T Consensus 379 ----------~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 379 ----------SLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred ----------CCCCCceECCCCCEEEEEEec
Confidence 123457899999988877754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=162.33 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=145.3
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEE-
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVL- 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l- 178 (389)
.++++.--.-.+|||||.|+||+|||+.+|+|..++. +..|.+++|.| .+.|+++ +.|++|+|-|.+.-.+.
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccC
Confidence 4455542334689999999999999999999988885 67999999995 7788775 66799999998731111
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd 255 (389)
+..+ -.+.+..|++.+.....++++..||+++=.|++. |+++.++..|.+.|..+.+++.-. +|+|++ |++||||+
T Consensus 324 ~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 324 KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 2222 2377888999855556777788999999999996 699999999999999999988655 566778 99999999
Q ss_pred CCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 256 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 256 ~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+.+.--+.-..|.... ....+.++-|+--+..+. +|..+-+||||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~----------GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAF----------GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccc--cceeecccCCCcceEEEe----------cCccceEEEeecccChhH
Confidence 8643222222333211 113455666665444433 234578999998876543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=163.35 Aligned_cols=239 Identities=16% Similarity=0.233 Sum_probs=167.7
Q ss_pred ccCceeEEEecCCC-eEEEEecCCCeEEEEeCC------CCeEEEEecCCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 100 LKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~------~g~~l~tl~~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
.+-+.+++|.|-.. +++|.|+.-|+|-|||+. +|-.+++.|...|.++.|+| -.++.++ |.|+|||+=
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss---SyDGtiR~~ 262 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS---SYDGTIRLQ 262 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee---ccCceeeee
Confidence 34466799985444 789999999999999994 22234555678999999995 3344443 567999999
Q ss_pred EcCCCeEEEEEee--cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCC-cEEEEE
Q 016446 171 SIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTF 246 (389)
Q Consensus 171 d~~tG~~l~tl~~--~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg-~~laS~ 246 (389)
|++++...-.+.. ........+|+ .+...++++..=|...+||.+++.- ..-++-|...|.+|+++|-. ++|||+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred eecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 9998764433332 22333566665 3455666666444999999998654 66677899999999999955 578899
Q ss_pred c-CCeEEEEeCC---Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC----C
Q 016446 247 R-NRTVAVWNFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----T 315 (389)
Q Consensus 247 s-D~tIklWd~~---G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~----t 315 (389)
+ |+|.||||++ ++ .|.++ .|... |++++|||+|-.|++.|.| .+|||||.. -
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~-~Hrrs-----V~sAyFSPs~gtl~TT~~D-----------~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTL-PHRRS-----VNSAYFSPSGGTLLTTCQD-----------NEIRVFDSSCISAK 404 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecc-cccce-----eeeeEEcCCCCceEeeccC-----------CceEEeeccccccc
Confidence 9 9999999983 33 35555 47765 8999999999889998875 799999953 1
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
-+.+.++ -|. ..-++++.+ .-.+|.||-.+++.|-.-..|-+.|
T Consensus 405 ~~p~~~I-~Hn---------------------------~~t~RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 405 DEPLGTI-PHN---------------------------NRTGRWLTP-FKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCcccee-ecc---------------------------Ccccccccc-hhheeCCCccEEEEeccCcceeEEc
Confidence 1122222 233 222333333 3468899999999887666565543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-16 Score=160.18 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=163.6
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccC
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~ 102 (389)
.+|.+||.+ |.+.+.+..+. +.+.+.+|||||+.|+.++... .+ .++.+|++..|+. ..+.. ..+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~-~~------~~l~~~dl~~g~~---~~l~~--~~g~ 249 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA-EPILSPAWSPDGKKLAYVSFER-GR------SAIYVQDLATGQR---ELVAS--FRGI 249 (433)
T ss_pred EEEEEECCC-CCCceEeecCC-CccccccCCCCCCEEEEEecCC-CC------cEEEEEECCCCCE---EEecc--CCCC
Confidence 468999985 77777787765 7899999999999999976432 23 5788899888764 22321 2233
Q ss_pred ceeEEEecCCCeEEE-EecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLT-YSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~La-s~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...++|| |||+.|+ +.+.++ .|.+||+.++++..... .....+++|| +|++|+.++.......|.++|+.+|+.
T Consensus 250 ~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 250 NGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ccCceEC-CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4468998 8998776 445555 69999998887543222 2345678999 688887765333223577778888775
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeC-C--CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C---Ce
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-N--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---RT 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D--~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---~t 250 (389)
.+ +..+......++|+ |++++|+..+. + ..|.+||+.+|+...... ........|+|||+.|+..+ + ..
T Consensus 329 ~~-lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 329 ER-LTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP--GSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred EE-eecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeEECCC--CCCCCCceECCCCCEEEEEEecCCceE
Confidence 43 33333445578887 78888888653 2 379999999988764433 23456789999999888775 2 35
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|.+++++|...+.+..+... +...+|||
T Consensus 405 L~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRVRQRLVSADGE-----VREPAWSP 432 (433)
T ss_pred EEEEECCCCceEEcccCCCC-----CCCCccCC
Confidence 77778888777777655433 46777777
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=154.66 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=147.1
Q ss_pred CCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
...|.+||.. |.....+ +...|.+.+|| ||++||..+....+..|.+||+.+|+.. .+..+.+.+...+|+ |++
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG 257 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDG 257 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCC
Confidence 4578889974 4433333 35689999999 6888988776666789999999998764 444455667788898 788
Q ss_pred CeEEEE-eCCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eEEEEeCCCcEEEEeccCcCCc
Q 016446 199 EKLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 271 (389)
Q Consensus 199 ~~l~~~-s~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tIklWd~~G~~l~tl~gh~~~~ 271 (389)
..|+.. +.++. |.+||++++++.+ +..|.......+|+|||+.|+..+ ++ .|.+||++|...+.+..+...
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~- 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR- 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-
Confidence 888764 55655 6777999888755 555666677899999999988765 33 677778875545555543322
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
+....|||||++||..+.+ ..+..|.+||+.++ ....+.. .
T Consensus 336 ----~~~~~~SpdG~~ia~~~~~--------~~~~~i~~~d~~~~-~~~~lt~-~------------------------- 376 (435)
T PRK05137 336 ----YSTPVWSPRGDLIAFTKQG--------GGQFSIGVMKPDGS-GERILTS-G------------------------- 376 (435)
T ss_pred ----ccCeEECCCCCEEEEEEcC--------CCceEEEEEECCCC-ceEeccC-C-------------------------
Confidence 4678899999999987654 22357889997544 3444431 1
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
..+.+.+|||||+.|+-.+.+
T Consensus 377 ---------~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 ---------FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ---------CCCCCCeECCCCCEEEEEEcc
Confidence 135568999999998776543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-17 Score=166.10 Aligned_cols=242 Identities=13% Similarity=0.151 Sum_probs=168.5
Q ss_pred CceeEEEecCC--CeEEEEecCCCeEEEEeCCCCeEE------EE--ecCCcEEEEEEcCCceEEEEecCCCCeeEEEEE
Q 016446 102 WPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML------YS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 102 ~~~~v~Fs~pd--G~~Las~s~D~tiklWdl~~g~~l------~t--l~~~~V~~vafS~g~~la~~~~~s~d~tiklWd 171 (389)
-|+++.|++.. ..+||-+.+||-|.|.|.+.-+-. +. .|-+.|.+++.-||+.++++ .+.|.|||+||
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVs--asGDsT~r~Wd 128 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVS--ASGDSTIRPWD 128 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEE--ccCCceeeeee
Confidence 34567887433 468999999999999997543311 11 23468999999998877776 45679999999
Q ss_pred cCCCeEEEE--EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-------EE--------------------E
Q 016446 172 IEDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LM--------------------E 222 (389)
Q Consensus 172 ~~tG~~l~t--l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-------~~--------------------~ 222 (389)
++++++... +.||...+.+++|.+.+...+++|+.|+.|.|||++-.. |. .
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999999987 889999999999996666777889999999999987322 11 1
Q ss_pred EcccCCCceEE---EEEcCCCcEEEEEc--CCeEEEEeCC-CcEEE------EeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 223 VSRTEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELVT------SFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 223 ~l~gh~~~v~s---v~fspdg~~laS~s--D~tIklWd~~-G~~l~------tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
....|...+.+ +.|.-|..+|||++ |++||+||+. ..+.. ...-|..--+--.+.++....-|.||..
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 11234555666 66777788888886 9999999985 33322 1111211000001345555666899988
Q ss_pred EecCCCcccccCCCCCeEEEEeCCCC--eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 368 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf 368 (389)
.|.| ++|.+||+.+- ..++.+.||.. .+- .| .=..
T Consensus 289 sCtD-----------~sIy~ynm~s~s~sP~~~~sg~~~--------------------~sf-----------~v-ks~l 325 (720)
T KOG0321|consen 289 SCTD-----------NSIYFYNMRSLSISPVAEFSGKLN--------------------SSF-----------YV-KSEL 325 (720)
T ss_pred EecC-----------CcEEEEeccccCcCchhhccCccc--------------------cee-----------ee-eeec
Confidence 8876 89999998642 23444455441 111 12 1246
Q ss_pred CCCCCEEEEecCCCcEEEcc
Q 016446 369 DEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 369 Spdg~~LaSgs~D~tIrlW~ 388 (389)
||||+.|+||+.|+-+.+|.
T Consensus 326 Spd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CCCCceEeccCCCcceeeee
Confidence 99999999999999999996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-16 Score=158.31 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=155.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec---CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS- 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s---~D~tiklWdl~~g~~l~tl~-~~~V~~vafS- 150 (389)
..+.++|...+.. +.+.. ....+.+.+|| |||+.||..+ .+..|.+|++.+|+...... ...+.+++||
T Consensus 179 ~~l~~~d~dg~~~---~~lt~--~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC---EEeec--CCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 4666777543332 22322 22234579998 9999999765 34689999999887433222 2345679999
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCeEEEEcccC
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTE 227 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklW--d~~tg~~~~~l~gh 227 (389)
||.+||..........|.+||+.+|++.+... +...+....|+ |++..|+..+. ++..+|| |+.+|+..+. ..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~ 329 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWE 329 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEEC-CCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecC
Confidence 68888876444444579999999988755443 33566788998 78888888774 4566666 7777765443 334
Q ss_pred CCceEEEEEcCCCcEEEEEc--C--CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 228 FMTPSAFIFLYENQLFLTFR--N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s--D--~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
.......+|||||++|+..+ + ..|.+||++ |+ .+.|.... . ..+..|||||++|+.++.+.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~-~-----~~~p~~SpDG~~i~~~s~~~------- 395 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTF-L-----DETPSIAPNGTMVIYSSSQG------- 395 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCC-C-----CCCceECCCCCEEEEEEcCC-------
Confidence 44566789999999998764 3 368889997 55 44555321 1 35778999999999988762
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCC
Q 016446 303 GSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 303 s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
....+.++++ +|+..+.|.+|.
T Consensus 396 -~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 396 -MGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred -CceEEEEEEC-CCCCeEECccCC
Confidence 2245889996 688889999887
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=164.01 Aligned_cols=158 Identities=13% Similarity=0.210 Sum_probs=131.7
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-------eEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCe
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 250 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-------~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~t 250 (389)
.+.||.+++..++|.|..+..||+||+|.||+||++-.+ +.+..|.||+..|--|+|.|-- +.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 345899999999999666678888999999999998754 3477889999999999999954 4566666 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 329 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~ 329 (389)
|+|||+. |+-+-+|. |.+. |+++.|+.||.+|++.|.| +.|||||..+|+.+..-.+|.++
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~TtckD-----------KkvRv~dpr~~~~v~e~~~heG~- 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCKD-----------KKVRVIDPRRGTVVSEGVAHEGA- 217 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeeccc-----------ceeEEEcCCCCcEeeecccccCC-
Confidence 9999996 99888888 8765 8999999999999999986 89999999999999999999953
Q ss_pred CcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec----CCCcEEEcc
Q 016446 330 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN----RHGLVHVWS 388 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs----~D~tIrlW~ 388 (389)
.=..+.|=.+|. |+|.+ .+..+.|||
T Consensus 218 --------------------------------k~~Raifl~~g~-i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 218 --------------------------------KPARAIFLASGK-IFTTGFSRMSERQIALWD 247 (472)
T ss_pred --------------------------------CcceeEEeccCc-eeeeccccccccceeccC
Confidence 223456777888 55444 577899997
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=169.91 Aligned_cols=303 Identities=12% Similarity=0.148 Sum_probs=205.2
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee--cc
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE--SL 100 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~--~~ 100 (389)
.+|-.|+.. +.++.. ..-+.+-|+|.-..||.+ .+. -.|.+||...|++..+ |... ..
T Consensus 1050 ~~i~~W~~~------~~~~n~-~~pk~~~~hpf~p~i~~a----d~r------~~i~vwd~e~~~~l~~---F~n~~~~~ 1109 (1387)
T KOG1517|consen 1050 NPIGNWDQK------FMTGNN-QPPKTLKFHPFEPQIAAA----DDR------ERIRVWDWEKGRLLNG---FDNGAFPD 1109 (1387)
T ss_pred ccccchHHH------HHhcCC-CCCceeeecCCCceeEEc----CCc------ceEEEEecccCceecc---ccCCCCCC
Confidence 346678764 223322 345788999999988883 345 5788999988886322 2111 11
Q ss_pred cCceeEEEe-cCCCeEEEEecCCCeEEEEeC-CCC----eEEEEe---cC----CcEEEEEEc---CCceEEEEecCCCC
Q 016446 101 KWPGFVEFD-DVNGKVLTYSAQDSIYKVFDL-KNY----TMLYSI---SD----KHVQEIKIS---PGIMLLIFNRSSSH 164 (389)
Q Consensus 101 ~~~~~v~Fs-~pdG~~Las~s~D~tiklWdl-~~g----~~l~tl---~~----~~V~~vafS---~g~~la~~~~~s~d 164 (389)
..+..+.|- ..|-.+|.+|+.||.||||+- .++ +++..+ ++ ..=..+.+. ..+.|+++ ++-
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~ 1186 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDV 1186 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCe
Confidence 123345553 234568889999999999973 232 233222 21 111113333 34455554 224
Q ss_pred eeEEEEEcCCCeEEEEEeec-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEcccCCCc--eEEEEEcC
Q 016446 165 VPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLY 238 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~~--v~sv~fsp 238 (389)
..|||||++.-++++.++.- ...+.++.-..+.+..+++|-.||.||++|.+.-. .+.+.+.|++. |.-+.|-+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 79999999998888888732 22334444443446788889999999999998644 46778899998 99999988
Q ss_pred CCcE-EEEEc-CCeEEEEeCCC-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 239 ENQL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 239 dg~~-laS~s-D~tIklWd~~G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.|-. |+||+ ||.|++||++. .....+.-...|..+..+.++..+++..+||||+. +.|||||+.
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------QLIKIYSLS- 1333 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc------------ceEEEEecC-
Confidence 6665 88998 99999999986 33333332222221222689999999999999864 799999965
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+.+..++.+.. ..++....+.+++|+|---.||.|+.|.+|-|+.
T Consensus 1334 G~~l~~~k~n~~---------------------------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPG---------------------------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred hhhhcccccCcc---------------------------cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 999988886652 1111113779999999999999999999999874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=154.69 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
+.|.++.|- ++++.++...|.+++|.++|.+.++.+.+++...|..+-.-|+++ |.+ .+.| -.+-+|+
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~t----qgRd------~~L~lw~ 83 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDT----QGRD------PLLILWT 83 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhh----cCCC------ceEEEEE
Confidence 456777777 999999999999999999999999999977778999998888855 555 5677 5666777
Q ss_pred eccCCCCCcceeEeeecccCceeEEEec-CCCeEEEEecCCCeEEEEeCC-CCeEEEEec---CCcEEEEEEcCCceEEE
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKISPGIMLLI 157 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~-~g~~l~tl~---~~~V~~vafS~g~~la~ 157 (389)
+.-+.......+ ...+..+..||- ++++ .+.|-+. .++-....| ...-..|.+-|.....-
T Consensus 84 ia~s~~i~i~Si----~~nslgFCrfSl~~~~k----------~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K 149 (323)
T KOG0322|consen 84 IAYSAFISIHSI----VVNSLGFCRFSLVKKPK----------NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK 149 (323)
T ss_pred ccCcceEEEeee----eccccccccceeccCCC----------cchhheecCCcccchhhhhccCccceeEccCchhccc
Confidence 765543211111 112222333330 1111 1122211 111111111 11122222222111100
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC--eEEEEeCCCcEEEEECCCCeEEE----------Ecc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNAELME----------VSR 225 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~--~l~~~s~D~tIklWd~~tg~~~~----------~l~ 225 (389)
- +. +-|.. +.+. .+. .+++|-+++.+-+||+.++..+- -..
T Consensus 150 ---l---gs--------vmc~~-----------~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a 202 (323)
T KOG0322|consen 150 ---L---GS--------VMCQD-----------KDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA 202 (323)
T ss_pred ---c---Cc--------eeeee-----------cccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh
Confidence 0 00 01111 1111 121 34556799999999999884322 235
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC---CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~---G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
.|..+|.++.|-+--..=++++ +..+-.|.++ |.|-.. ..|... ++.|..|.+=||||++|+++.|
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lk--npGv~gvrIRpD~KIlATAGWD------- 272 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLK--NPGVSGVRIRPDGKILATAGWD------- 272 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEec--CCCccceEEccCCcEEeecccC-------
Confidence 6899999999987776677787 7777789884 443210 011111 1247999999999999998765
Q ss_pred CCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 302 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
+-||+++.+|.+.++.|.-|. ..|++||||||...+|.||.|
T Consensus 273 ----~RiRVyswrtl~pLAVLkyHs----------------------------------agvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 273 ----HRIRVYSWRTLNPLAVLKYHS----------------------------------AGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred ----CcEEEEEeccCCchhhhhhhh----------------------------------cceeEEEeCCCCchhhhccCC
Confidence 899999999999999999998 589999999999999999999
Q ss_pred CcEEEccC
Q 016446 382 GLVHVWSN 389 (389)
Q Consensus 382 ~tIrlW~~ 389 (389)
+.|-||+.
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999974
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-17 Score=165.23 Aligned_cols=238 Identities=12% Similarity=0.154 Sum_probs=187.4
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCC---ceEEEEecCC-----------
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG---IMLLIFNRSS----------- 162 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g---~~la~~~~~s----------- 162 (389)
+|.+-+.++.-+ |-|..|||||.|||||+|.+.||.|+++.. ...|++|+|+|+ ..||++-...
T Consensus 398 GHtg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 466667788886 789999999999999999999999999998 789999999963 3455442221
Q ss_pred ------------------CCeeEEEEEcCC---Ce-EEEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCC
Q 016446 163 ------------------SHVPLKILSIED---GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRN 217 (389)
Q Consensus 163 ------------------~d~tiklWd~~t---G~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~t 217 (389)
.|..+-.|.-.. ++ -+...-.|...+..|.++ ..|++|++.. ....|-|.++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 122334565331 11 011222466788999998 6799999854 668899999977
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+....-|..-.+.|..+.|.|-..+|..+....|+|+|+. +++++.|.-..-| |.+++++|.|.-|+.|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~d-- 628 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSYD-- 628 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecCC--
Confidence 7666666666678999999999999999999999999996 8888887766666 7999999999999998765
Q ss_pred cccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE
Q 016446 297 EDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 375 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L 375 (389)
+.+-.+|+.- -+..++|+-|. ..|++|+|++-=..+
T Consensus 629 ---------~k~~WfDldlsskPyk~lr~H~----------------------------------~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 629 ---------KKMCWFDLDLSSKPYKTLRLHE----------------------------------KAVRSVAFHKRYPLF 665 (733)
T ss_pred ---------CeeEEEEcccCcchhHHhhhhh----------------------------------hhhhhhhhcccccee
Confidence 7887778753 46778888888 689999999999999
Q ss_pred EEecCCCcEEEc
Q 016446 376 YTGNRHGLVHVW 387 (389)
Q Consensus 376 aSgs~D~tIrlW 387 (389)
+|||.||+|.+.
T Consensus 666 as~sdDgtv~Vf 677 (733)
T KOG0650|consen 666 ASGSDDGTVIVF 677 (733)
T ss_pred eeecCCCcEEEE
Confidence 999999999875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-17 Score=158.28 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=146.9
Q ss_pred CCCeEEEEecCCCeEEEEeCCC----------------CeEEEEecC--CcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKN----------------YTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~----------------g~~l~tl~~--~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
++..+.|+=+..|.|+|||+.. -++++++.+ ..=.++.||| -+.|+++ ..-+.|+||
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG---Dc~~~I~lw 239 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG---DCVKGIHLW 239 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC---ccccceEee
Confidence 3667888889999999999742 124555543 4567899997 4445443 233689999
Q ss_pred EcCCCeEE---EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 171 SIEDGTVL---KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 171 d~~tG~~l---~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
...+|.=. ..|.+|...|..++++|.....++++|-|++|||||++.+ -|+-+ +.|..-|+.|.|+.+-.+||
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceee
Confidence 99988744 4677899999999999666678888999999999999998 56666 89999999999999888999
Q ss_pred EEc-CCeEEEEeC---C-CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 245 TFR-NRTVAVWNF---R-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 245 S~s-D~tIklWd~---~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
||+ ||+++|||+ . |+.+.+|+-|..+ |.+|.|+|... .||.++ .|..|-|||+..
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p-----ItsieW~p~e~s~iaasg-----------~D~QitiWDlsv 379 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAP-----ITSIEWHPHEDSVIAASG-----------EDNQITIWDLSV 379 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCC-----eeEEEeccccCceEEecc-----------CCCcEEEEEeec
Confidence 999 999999997 3 7889999999998 79999999433 333332 368999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-16 Score=148.84 Aligned_cols=272 Identities=13% Similarity=0.109 Sum_probs=197.0
Q ss_pred EEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 7 IEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 7 ~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
.++.|+ |.+||+++.||.+-+||+.|-..-+.|.+| ..+|.|+.|||||..|.++ +.| |.+.+||+.
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr~Llts----S~D------~si~lwDl~ 95 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGRKLLTS----SRD------WSIKLWDLL 95 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCCEeeee----cCC------ceeEEEecc
Confidence 467888 999999999999999999987777777776 5999999999999999995 477 999999999
Q ss_pred cCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---C---CcEEE-EEEc-CCceEE
Q 016446 85 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---D---KHVQE-IKIS-PGIMLL 156 (389)
Q Consensus 85 ~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~---~~V~~-vafS-~g~~la 156 (389)
.|.+++... | -..++++.|.|.+-+..+..--+..-.+=++.+++. ..|+ . +.+.+ ..|. -|.++.
T Consensus 96 ~gs~l~rir-f----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 96 KGSPLKRIR-F----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CCCceeEEE-c----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEE
Confidence 998743322 2 123456788743333333233343344445444321 1111 1 22322 3455 499998
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEecCCCeEEEEeCCCcEEEEECCC-------CeEE--EEccc
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELM--EVSRT 226 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-------g~~~--~~l~g 226 (389)
++.+. +.+-+.|.+|-+|+..++--. ..++.+.|+ .-+..+++-..|.+||.++++. |++. +.+..
T Consensus 170 tGtsK---Gkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 170 TGTSK---GKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred EecCc---ceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 87544 789999999999999998554 778899997 5688999999999999999872 1211 11100
Q ss_pred --CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 227 --EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 227 --h~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
..-+=..+.||.||.++..++ -..+-||... |.|++.|.|..+-. ...|.+.|=--.|+|-.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~i~si~--------- 312 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPIIASIA--------- 312 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceeeeeecc---------
Confidence 011224688999999999886 7799999997 99999999877532 57888999888888863
Q ss_pred CCCCCeEEEEeCCC
Q 016446 302 EGSAGSINVSSILT 315 (389)
Q Consensus 302 ~s~D~tIklWd~~t 315 (389)
.|+|+||...+
T Consensus 313 ---sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 ---SGVVYIWAVVQ 323 (405)
T ss_pred ---CCceEEEEeec
Confidence 28999998653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=149.72 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=191.8
Q ss_pred EecCceEEEEec--ccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee-eeeeeEeEeccCCCC-Cccee
Q 016446 19 LAHSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK-CRSTKIEYIRRGKPD-SGFAL 94 (389)
Q Consensus 19 ~~~~gtiklW~~--~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~-~~~~~l~~i~~g~~~-~~~~l 94 (389)
+-++..|.|-.+ +.++.++..=.|+.+.||.++-+|..+.|.+... .+++..+ +..+.||.++...-- ...+|
T Consensus 36 lK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~y---n~~s~s~vl~~aaiw~ipe~~~~S~~~tl 112 (370)
T KOG1007|consen 36 LKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVY---NDTSDSGVLTGAAIWQIPEPLGQSNSSTL 112 (370)
T ss_pred cCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEE---eccCCCcceeeEEEEecccccCccccchh
Confidence 345666666544 4466777777788899999999999886554322 2233232 255668988533210 11111
Q ss_pred -----EeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEEec-------CCcEEEEEEcC---CceEEEE
Q 016446 95 -----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKHVQEIKISP---GIMLLIF 158 (389)
Q Consensus 95 -----~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~tl~-------~~~V~~vafS~---g~~la~~ 158 (389)
...+..+-+..|.|- ||+..||+-. |..|-||++..+.. ...+. .....+=++|| |.++|++
T Consensus 113 E~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hHhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 112455566789996 8999999875 89999999988776 34442 24567778885 8888876
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCC-eEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEE
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~ 235 (389)
+ |.|++-||++|-.+...++ .|.+.++.+.|+| .-+ .|++++.|+-|||||.+ +..+++.+.+|..+||+|.
T Consensus 191 ~----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 191 S----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred C----CCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 3 4699999999988888887 7888999999984 444 45557799999999988 4678999999999999999
Q ss_pred EcCC-CcEEEEEc-CCeEEEEeCC------------------------------CcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 236 FLYE-NQLFLTFR-NRTVAVWNFR------------------------------GELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 236 fspd-g~~laS~s-D~tIklWd~~------------------------------G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|+|. .|+++|++ |..|-||... ..++.+++.|.+. |+.+++|.
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSs 340 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSS 340 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeecc
Confidence 9984 57788887 9999999621 1134577788876 79999987
Q ss_pred CCC-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 284 DQD-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 284 dG~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
--- +.||=| -||-+-|=.+
T Consensus 341 adPWiFASLS-----------YDGRviIs~V 360 (370)
T KOG1007|consen 341 ADPWIFASLS-----------YDGRVIISSV 360 (370)
T ss_pred CCCeeEEEec-----------cCceEEeecC
Confidence 444 445543 4577766544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=161.97 Aligned_cols=109 Identities=9% Similarity=0.177 Sum_probs=92.9
Q ss_pred ceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-Cc-------EEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcc
Q 016446 230 TPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPED 298 (389)
Q Consensus 230 ~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~-------~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~ 298 (389)
.|..+.|.| |-+.||.+. ||.|+||.+. +. .-..|++|... |.++.|+| -...||+++.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK-----I~slRfHPLAadvLa~asy----- 698 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK-----ITSLRFHPLAADVLAVASY----- 698 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce-----EEEEEecchhhhHhhhhhc-----
Confidence 577777776 677888888 9999999985 32 23567888876 79999999 4567787765
Q ss_pred cccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 299 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
|-||+|||+.+++.--.|.||+ +.|.++||||||+.+||-
T Consensus 699 ------d~Ti~lWDl~~~~~~~~l~gHt----------------------------------dqIf~~AWSpdGr~~AtV 738 (1012)
T KOG1445|consen 699 ------DSTIELWDLANAKLYSRLVGHT----------------------------------DQIFGIAWSPDGRRIATV 738 (1012)
T ss_pred ------cceeeeeehhhhhhhheeccCc----------------------------------CceeEEEECCCCcceeee
Confidence 4899999999999999999999 599999999999999999
Q ss_pred cCCCcEEEcc
Q 016446 379 NRHGLVHVWS 388 (389)
Q Consensus 379 s~D~tIrlW~ 388 (389)
..||+||+++
T Consensus 739 cKDg~~rVy~ 748 (1012)
T KOG1445|consen 739 CKDGTLRVYE 748 (1012)
T ss_pred ecCceEEEeC
Confidence 9999999985
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-15 Score=152.88 Aligned_cols=234 Identities=8% Similarity=0.043 Sum_probs=160.2
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.|.+||.+ |...+.+..+. ..+.+.+|||||+.|+.++... .+ .++.+|++..|+. ..+. ...+.+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~-g~------~~i~~~dl~~g~~---~~l~--~~~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGS-SLVLTPRFSPNRQEITYMSYAN-GR------PRVYLLDLETGQR---ELVG--NFPGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEecCC-CCeEeeEECCCCCEEEEEEecC-CC------CEEEEEECCCCcE---EEee--cCCCcc
Confidence 77888885 78778888764 7999999999999999976432 34 6889999988864 2232 122344
Q ss_pred eeEEEecCCCeEEE-EecCCCe--EEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~La-s~s~D~t--iklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...+|| |||+.|+ +.+.++. |.+||+.++++.. +. .....+.+|| ||..|+..+..+....|.++|+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 568998 8998776 5555655 6677988877543 43 3346779999 688888776444456789999877654
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCC---CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C-----
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 248 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D----- 248 (389)
+.+..+.+......|+ |+++.|+..+.+ ..|.+||+.+++.. .+.. ...+...+|+|||+.|+..+ +
T Consensus 327 -~~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 -RRISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred -EEeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4454344556677887 788888886532 47888998766543 3322 23577889999999988664 2
Q ss_pred -CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 249 -RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 249 -~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
..+.+.|++|...+.+.. ... +...+|||
T Consensus 403 ~~~L~~~dl~g~~~~~l~~-~~~-----~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNEREVPT-PGD-----ASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCceEEccC-CCC-----ccCcccCC
Confidence 245666777655555542 211 45666666
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=163.47 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=175.5
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeC---C-----CCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDL---K-----NYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl---~-----~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
.-+...+|. |-.-.|++|+.|++++||+| . .-+++++|. ...|.+|+++ .++.+.++ +-|++|+.
T Consensus 295 d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg---g~Dg~I~~ 370 (577)
T KOG0642|consen 295 DCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG---GIDGTIRC 370 (577)
T ss_pred hhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---ccCceeee
Confidence 335568895 66778999999999999999 2 123677875 4689999999 68888775 56689999
Q ss_pred EEcCC------C----eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEEEEc
Q 016446 170 LSIED------G----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFL 237 (389)
Q Consensus 170 Wd~~t------G----~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv~fs 237 (389)
|++.- . .+..+|.||++.+|.++++ +..++|++.+.|+|+|+|+.....+ .++.. ......+|.|-
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 95441 1 2456788999999999998 5578899999999999999976665 33322 22355566663
Q ss_pred CC--CcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCc--CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 238 YE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 238 pd--g~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~--~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
.- ...++++.-+---+.++. +.-++.++....+. ..+.++-|.-.|.+.+..++-. |++||+.|
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-----------d~~Ir~~d 517 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-----------DRSIRFFD 517 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-----------CCceeccc
Confidence 22 223333333322355555 55555555332211 1123677888888888888654 69999999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+|+.++....|- ..|+++|+.|+|-+|++|+.|+.|+||.+
T Consensus 518 n~~~~~l~s~~a~~----------------------------------~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 518 NKTGKILHSMVAHK----------------------------------DSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccccchheeecc----------------------------------ceecceeecCCCceEEeecCCceeehhhc
Confidence 99999999999997 58999999999999999999999999975
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=148.93 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=171.3
Q ss_pred ccEEEEEee--ccEEEEEecC--------ceEEEEeccc---------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHS--------GVCAAFSRET---------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSV 64 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~--------gtiklW~~~t---------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~ 64 (389)
..|+.|..+ .+.|++.+++ --+.||.+.. -++++.|...+-..|.+|-|.|++++||+.
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-- 141 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-- 141 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--
Confidence 456667666 5666666655 3467898752 235556663333679999999999999984
Q ss_pred eecCCCcceeeeeeeEeEeccCCCCCcceeEeee---cccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 65 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE---SLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 65 ~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~---~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
+| ..|-+|++..+.... ..+-..+ +.-+..+-++|| -||..+|+. .|+|++.||+.+-++...+.
T Consensus 142 ---~d------n~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 142 ---DD------NNIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred ---cc------CceEEEEcccCcchh-eeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh
Confidence 45 788899987766421 1111111 111222457773 478888865 58999999999888776664
Q ss_pred ---CCcEEEEEEcCCc--eEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 016446 141 ---DKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 214 (389)
Q Consensus 141 ---~~~V~~vafS~g~--~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd 214 (389)
+..|+++.|+|+. +||+ +++|+.|||||.+ +-..+++|.+|.|.+|.|.|++..++.|++++.|..|.||.
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt---~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVT---CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhhcceeeeccCCCCceEEEEE---cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 5689999999733 4544 4778999999987 45688999999999999999977788999999999999997
Q ss_pred CCCCe-----------------------------EEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeC
Q 016446 215 VRNAE-----------------------------LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 215 ~~tg~-----------------------------~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~ 256 (389)
..+-. .++++..|.+.|++++||. |==+|||-| ||.+-|=.+
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 65321 2457788999999999975 555677778 887765444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-17 Score=176.04 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=176.3
Q ss_pred eEEEecCCCeE----EEEecCCCeEEEEeCCC---Ce---EEEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 105 FVEFDDVNGKV----LTYSAQDSIYKVFDLKN---YT---MLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 105 ~v~Fs~pdG~~----Las~s~D~tiklWdl~~---g~---~l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
.+++. +.|.. ||.|..||+|-|||... +. .+.+. |.+.|+.+.|++ +..||++ ++|+.|-||
T Consensus 69 kL~W~-~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG---a~~geI~iW 144 (1049)
T KOG0307|consen 69 KLAWG-SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG---ADDGEILIW 144 (1049)
T ss_pred eeeec-ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc---CCCCcEEEe
Confidence 36776 55554 99999999999999754 33 23333 357899999994 5588765 456899999
Q ss_pred EcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC--ceEEEEEcCCCc-EEEE
Q 016446 171 SIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM--TPSAFIFLYENQ-LFLT 245 (389)
Q Consensus 171 d~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~--~v~sv~fspdg~-~laS 245 (389)
|+..=+.-.++. .....|..++|+......|++++.++++-|||++..+.+--+..|.. .+..++|+|+.- .|+.
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998644333332 12355788888755455677788999999999998876555555543 578999999764 3334
Q ss_pred Ec--C--CeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 246 FR--N--RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 246 ~s--D--~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++ | -.|++||++ -.-+++|++|+.. |.++.+.|.+ .+|+|++.| +.|-+||.+||+.
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~G-----ilslsWc~~D~~lllSsgkD-----------~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRG-----ILSLSWCPQDPRLLLSSGKD-----------NRIICWNPNTGEV 288 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccc-----eeeeccCCCCchhhhcccCC-----------CCeeEecCCCceE
Confidence 43 4 499999996 5689999999976 7999999976 899987664 8999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEcc
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 388 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~ 388 (389)
+..|.... +|+..|.|.|.-- .++.+|.||+|-|..
T Consensus 289 l~~~p~~~----------------------------------nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 289 LGELPAQG----------------------------------NWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eeecCCCC----------------------------------cceeeeeecCCCcchhhhheeccceeeee
Confidence 99998744 6999999999887 889999999998864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=147.22 Aligned_cols=265 Identities=10% Similarity=0.096 Sum_probs=181.8
Q ss_pred cEEEEEecCceEEEEecc-cc--eeeeeeecC-CcceEEEEEEeeCCC----EEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 14 DIVFALAHSGVCAAFSRE-TN--RRICFLNVS-PDEVIRSLFYNKNND----SLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~-tg--~~l~tl~~~-~~~~v~sv~~spdg~----~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
|.+|++ -..++-+++.. .| +.|++.--. +.+....++++-|-+ .||. ++.. ..|++-|+..
T Consensus 56 ~vfatv-G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~------GvIrVid~~~ 124 (385)
T KOG1034|consen 56 QVFATV-GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYL------GVIRVIDVVS 124 (385)
T ss_pred ceEEEe-CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecce------eEEEEEecch
Confidence 444444 45567788853 23 333332222 456788888887744 3555 4455 8899999999
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-----CCcEEEEEEc-CCceEEEEe
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-----~~~V~~vafS-~g~~la~~~ 159 (389)
+++.. .+- .+-..|..+.|.|.+-|+|+|+|.|.+|||||+.+..|+..+- .++|.+|.|| +|.+||+
T Consensus 125 ~~~~~--~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S-- 198 (385)
T KOG1034|consen 125 GQCSK--NYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS-- 198 (385)
T ss_pred hhhcc--cee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec--
Confidence 88732 233 2444566799985556899999999999999999999998774 4689999999 8999986
Q ss_pred cCCCCeeEEEEEcCCCeEEEEE----------------------------eecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 160 RSSSHVPLKILSIEDGTVLKVF----------------------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl----------------------------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
++.|+++|||++..-+.-..+ .-|...|..|.| .++.+++.|-++.|.
T Consensus 199 -cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 199 -CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIV 274 (385)
T ss_pred -cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCceEE
Confidence 488899999999842211111 012222333333 367899999889999
Q ss_pred EEEC-CCCeE-------------EEEcccCCCceEE--EEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcCCc
Q 016446 212 ILDV-RNAEL-------------MEVSRTEFMTPSA--FIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWH 271 (389)
Q Consensus 212 lWd~-~tg~~-------------~~~l~gh~~~v~s--v~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~~~ 271 (389)
.|-. +-++- +..++-..-.+|- ++|.|=++.||-|. -|+|-+||++ -+ ...||..+...
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~- 353 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG- 353 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc-
Confidence 9977 22221 1112222223444 56678899999998 9999999996 33 34455544432
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
..|...+||.||.+|+-.+.| ++|-=||.
T Consensus 354 --~tVRQ~sfS~dgs~lv~vcdd-----------~~Vwrwdr 382 (385)
T KOG1034|consen 354 --STVRQTSFSRDGSILVLVCDD-----------GTVWRWDR 382 (385)
T ss_pred --ceeeeeeecccCcEEEEEeCC-----------CcEEEEEe
Confidence 358999999999999998865 89999984
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-17 Score=173.31 Aligned_cols=228 Identities=15% Similarity=0.188 Sum_probs=175.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
|+..|+.+.|+ ..|.++.+|+.|..||||..+++.|+.++.+ ..|..+|.+ .+.++|++ |.|.-||+|.+.+|
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa---S~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA---SNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc---ccCceEEEEecCCC
Confidence 66667889998 8999999999999999999999999999875 579999999 67777654 67899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--------------------------------
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------------------------------- 223 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-------------------------------- 223 (389)
..+..|.+|++.|.+++|+|. .+++.|+|+++||.+ -+.+..
T Consensus 265 ~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999952 277899999999987 111110
Q ss_pred ---------cccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 224 ---------SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 224 ---------l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
+..|...+.-+.++.|- .+.+++. +--+++|++- |.++..+.+|... +.-+.|+|=..+++..
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhh
Confidence 11122222222222221 3444554 6778899995 9999999999987 6888999966655542
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 370 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp 370 (389)
++.||.+-|||+-.|..++.. .||. .+..-+||+
T Consensus 414 ----------ag~dgst~iwdi~eg~pik~y~~gh~-----------------------------------kl~d~kFSq 448 (1113)
T KOG0644|consen 414 ----------AGYDGSTIIWDIWEGIPIKHYFIGHG-----------------------------------KLVDGKFSQ 448 (1113)
T ss_pred ----------ccCCCceEeeecccCCcceeeecccc-----------------------------------eeeccccCC
Confidence 356799999999999887664 4554 566779999
Q ss_pred CCCEEEEecCCCcEEE
Q 016446 371 ERNEIYTGNRHGLVHV 386 (389)
Q Consensus 371 dg~~LaSgs~D~tIrl 386 (389)
||+.++.....|.+.|
T Consensus 449 dgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYI 464 (1113)
T ss_pred CCceEecCCCCCceEE
Confidence 9999998888777655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=155.72 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=202.9
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
-|.+|.|. |--++.++ +..+-++|...|..+++|.+|. +.|++||||.||+..|| |+.| +.+-+|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK-DtVycVAys~dGkrFAS----G~aD------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK-DTVYCVAYAKDGKRFAS----GSAD------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc-ceEEEEEEccCCceecc----CCCc------eeEEEec
Confidence 46788888 43333333 3456699998899999999985 99999999999999999 6677 6777777
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecC
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~ 161 (389)
-+.--. |- -.|...+....|. |=.+.|||+|-. ..-+|..+.-....--....|.++++. ||++||.+-
T Consensus 82 ~klEG~-----Lk-YSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~-- 151 (1081)
T KOG1538|consen 82 SKLEGI-----LK-YSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM-- 151 (1081)
T ss_pred ccccce-----ee-eccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec--
Confidence 422111 11 1233345568997 778899999864 456898643222111124678999999 999999874
Q ss_pred CCCeeEEEEEcCCCeEEEEEe---ecCCceeEEEEEecCC----CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 162 SSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~---~~~~~~~~v~f~~~~~----~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
.++||.|-+ .+|+.--.+. |...++++|+|+|..+ +.++..-+..|+-.+.+ +|+.+..-+.-...+-.+
T Consensus 152 -~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 152 -FNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI 228 (1081)
T ss_pred -cCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh
Confidence 447998888 6777766665 3556789999985433 57777889999999988 566655434445566778
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.+-|+|++++-|+ |+.++++..+|-++-|+.....| ||+|+..|+||+.+.||.| |||--+++
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCqD-----------GTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQD-----------GTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEcc-----------Ceeehhhh
Confidence 8899999999987 99999999999999999887778 8999999999999999986 89888876
Q ss_pred C
Q 016446 314 L 314 (389)
Q Consensus 314 ~ 314 (389)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=173.57 Aligned_cols=231 Identities=10% Similarity=0.108 Sum_probs=186.7
Q ss_pred EEEEEecCceEEEEeccc---c---eeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 15 IVFALAHSGVCAAFSRET---N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~t---g---~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
+||.+.+||.|-||+... + ..|.+.+.|+ ..|+.+-|||+.. .||| |.+| ..|.|||+..-+
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLAS----Ga~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-GPVLGLDFNPFQGNLLAS----GADD------GEILIWDLNKPE 150 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccC-CceeeeeccccCCceeec----cCCC------CcEEEeccCCcC
Confidence 599999999999999653 2 3677888876 8999999999955 8988 7788 899999986533
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--C--CcEEEEEEcC--CceEEEEecC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--KHVQEIKISP--GIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~--~~V~~vafS~--g~~la~~~~~ 161 (389)
.=+.- . .+.....|..|++......+|||++.++.+-+||+..-+++..+. . ..+..|+++| -.+|++++.+
T Consensus 151 tP~~~-~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 151 TPFTP-G-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred CCCCC-C-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 21110 0 112333456688865556789999999999999998878776665 2 3578899995 4466677667
Q ss_pred CCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 162 SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 162 s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
...-.|++||++. -..+++|++|...+.++.+...|+..+++++.|+.|-+||.+|||.+-.+....+|+..|.|.|..
T Consensus 229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 6778999999763 357889999999999999997777888889999999999999999999999999999999999987
Q ss_pred c-EEEEEc-CCeEEEEeCCC
Q 016446 241 Q-LFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 241 ~-~laS~s-D~tIklWd~~G 258 (389)
- ++|.++ ||.|.|+.++|
T Consensus 309 P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 309 PSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cchhhhheeccceeeeeeec
Confidence 7 777778 99999999974
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-15 Score=151.37 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=142.8
Q ss_pred CeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 123 SIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
..|.+||. +|.....+ +...|.+.+|| +|+.||..+..+....|.+||+.+|+... +....+.....+|+ ||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 46667776 55544444 35679999999 68889887655555679999999998654 33233556788998 7888
Q ss_pred eEEE-EeCCCcEEEEE--CCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeC--CCcEEEEeccCcCCcC
Q 016446 200 KLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHP 272 (389)
Q Consensus 200 ~l~~-~s~D~tIklWd--~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~--~G~~l~tl~gh~~~~~ 272 (389)
+|+. .+.|+..+||. +.+++ ++.+..|.....+.+|+|||+.|+..+ ++..+||.+ .+...+.+..+...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 8876 56788877775 55555 455566666677889999999888665 577888875 43333323222221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
..+.+|||||++||..+.+ +.+..|.+||+.+|+.. .+..+.
T Consensus 330 ---~~~~~~SpDG~~Ia~~s~~--------~g~~~I~v~d~~~g~~~-~lt~~~-------------------------- 371 (427)
T PRK02889 330 ---NTSPRISPDGKLLAYISRV--------GGAFKLYVQDLATGQVT-ALTDTT-------------------------- 371 (427)
T ss_pred ---cCceEECCCCCEEEEEEcc--------CCcEEEEEEECCCCCeE-EccCCC--------------------------
Confidence 2467899999999987654 12347999999988754 443221
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
...+..|||||+.|+.++.++
T Consensus 372 ---------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 ---------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ---------CccCceECCCCCEEEEEEecC
Confidence 235679999999998888654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=148.23 Aligned_cols=247 Identities=12% Similarity=0.048 Sum_probs=162.0
Q ss_pred EeeccEEEEEecCc--eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 10 VAARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 10 ~~~~~~~a~~~~~g--tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
.|++.+..+....+ .+.++|. .|+..+.+..+. +.+.+.+|||||+.|+.++.. ... .++.+|++..|+
T Consensus 161 ~f~~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~-~~~------~~I~~~dl~~g~ 231 (427)
T PRK02889 161 VFSTRIAYVIKTGNRYQLQISDA-DGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFE-SKK------PVVYVHDLATGR 231 (427)
T ss_pred ccccEEEEEEccCCccEEEEECC-CCCCceEeccCC-CCcccceEcCCCCEEEEEEcc-CCC------cEEEEEECCCCC
Confidence 45566555554444 4555666 387777777664 789999999999999987643 223 568899998887
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEE-EecCCCeEEEEeC--CCCeEEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDL--KNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La-s~s~D~tiklWdl--~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
. ..+. ...+.....+|| |||+.|| +.+.|+..+||.+ .+++ +..+. ...+.+..|| ||+.|+..+..
T Consensus 232 ~---~~l~--~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 232 R---RVVA--NFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred E---EEee--cCCCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC
Confidence 4 2232 122344578998 8998887 5678888888764 3444 44443 2345678999 68888765432
Q ss_pred CCCeeEEEE--EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC---CcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 162 SSHVPLKIL--SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 162 s~d~tiklW--d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
+ +...|| ++.+|+.. .+..+.......+|+ |++..|+..+.+ ..|.+||+.+|+..+...+ ......+|
T Consensus 305 ~--g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~ 378 (427)
T PRK02889 305 G--GAPQIYRMPASGGAAQ-RVTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSF 378 (427)
T ss_pred C--CCcEEEEEECCCCceE-EEecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceE
Confidence 2 344555 55566543 333223344567887 788888886644 3799999999987654433 24578899
Q ss_pred cCCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 237 LYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 237 spdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
+|||+.|+..+ .+.-.|+ +++|+..+.+..+... +...++||
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 424 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD-----VREPSWGP 424 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC-----CCCCccCC
Confidence 99999998886 3333344 4568777777655432 46677777
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=168.89 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=176.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
|+.|++.+|- |.+|.+++.|..+|+|.++|++||.++.||. .-|..+|.+.++-.+|+ ++.| .-|++
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs-~ditdlavs~~n~~iaa----aS~D------~vIrv 258 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS-GDITDLAVSSNNTMIAA----ASND------KVIRV 258 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc-cccchhccchhhhhhhh----cccC------ceEEE
Confidence 7889999998 9999999999999999999999999999985 89999999999999988 5688 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEE---------------------
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYS--------------------- 138 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~t--------------------- 138 (389)
|-++.|.+. ..||+ +.|.+.+++|| |-- +.+.|||+++||.. -.. ++.
T Consensus 259 Wrl~~~~pv--svLrg--htgavtaiafs-P~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 259 WRLPDGAPV--SVLRG--HTGAVTAIAFS-PRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EecCCCchH--HHHhc--cccceeeeccC-ccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccc
Confidence 999999873 33654 66778899998 632 77899999999975 110 010
Q ss_pred -----ec------CCcEEEEEEcCCc-eEEEEec--------CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCC
Q 016446 139 -----IS------DKHVQEIKISPGI-MLLIFNR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 139 -----l~------~~~V~~vafS~g~-~la~~~~--------~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~ 198 (389)
.. .+....++..... .+++.++ .-.+..+..|++.+|++++.+.+|.+.++-+.|+ |++
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H-pfn 407 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH-PFN 407 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec-CCC
Confidence 00 0112222222111 1122211 2335678999999999999999999999999999 555
Q ss_pred CeEEE-EeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 199 EKLLV-KQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 199 ~~l~~-~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
-+++. ++.||.+-|||+..|..++. ..+|. .+..-+||+||+-++-.- =|.+.|-..
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 55554 78999999999999998765 46665 455678999999888665 577777765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=152.25 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=112.1
Q ss_pred ceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 103 PGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 103 ~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
+.+|.|- ++.. .||||+.|..||+|-++.++. +..+.+| +-+.+|
T Consensus 16 v~s~dfq-~n~~~~laT~G~D~~iriW~v~r~~~-------------------------~~~~~~V--------~y~s~L 61 (434)
T KOG1009|consen 16 VYSVDFQ-KNSLNKLATAGGDKDIRIWKVNRSEP-------------------------GGGDMKV--------EYLSSL 61 (434)
T ss_pred eEEEEec-cCcccceecccCccceeeeeeeecCC-------------------------CCCceeE--------EEeecc
Confidence 3568886 6666 999999999999998754331 0111111 233344
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC--------C--------CeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--------N--------AELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~--------t--------g~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
..|...++.|.|+ |+++.||+++.+++|-||-.. + -...+.+.+|...++.++|+||++++++
T Consensus 62 s~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 62 SRHTRAVNVVRFS-PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred cCCcceeEEEEEc-CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 4555555555555 445555555555555555433 2 2346778999999999999999999999
Q ss_pred Ec-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 246 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 246 ~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
++ |+++++||+. |.+++.+.+|.+. |..+++-|-+|++++=|.|
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~y-----vqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHY-----VQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccc-----cceeecchhhhhhhhhccC
Confidence 99 9999999997 9999999999986 7999999999999997654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-15 Score=144.55 Aligned_cols=287 Identities=13% Similarity=0.153 Sum_probs=210.0
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec------cCCCCCcceeEeeecccCceeEEEecC
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------RGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~------~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
.+.+| ...|+.|-||.+|+.||| |++| ..+++|.+. +.|+ ..+..+.|...|++++|. -
T Consensus 51 D~~~H-~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KP---I~~~~~~H~SNIF~L~F~-~ 115 (609)
T KOG4227|consen 51 DVREH-TGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKP---IGVMEHPHRSNIFSLEFD-L 115 (609)
T ss_pred hhhhh-ccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCC---ceeccCccccceEEEEEc-c
Confidence 46665 489999999999999999 8999 999999983 3333 224445566678899997 6
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecC----CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCe---EEEEEee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYH 183 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~----~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~ 183 (389)
..+.|-||..+++|-+=|+++.+-++.+.. +.|..+..+| +.+||+.+ .++-|-+||+...+ .+.-+..
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecC
Confidence 778999999999999999999998888852 4799999996 77777763 45899999998655 1122222
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EE-----EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~-----~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
......++.|.|..+..|++.++-+-+-|||.+.... ++ -|......-.++.|+|.|..|.+-. -.---++|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 2355688999976778888889999999999875332 11 1122121224577999999999887 44445889
Q ss_pred CC-CcEEEEeccCc--CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----------------
Q 016446 256 FR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---------------- 316 (389)
Q Consensus 256 ~~-G~~l~tl~gh~--~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg---------------- 316 (389)
+. .+|..--.+|. +..+.|.+.+..|--|-. ++|||.+ =.|.||-+...
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~-----------~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDH-----------WGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcc-----------cceEEEecCCCccccCccccCcchhhC
Confidence 86 45543333443 344456678888876654 8888764 78999987531
Q ss_pred -------eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 317 -------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 317 -------~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.+..|+||. ..+..|.|+|-..+|+|.+-.+.+|||.
T Consensus 341 ~~~~~i~~~~~VLrGHR----------------------------------Sv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHR----------------------------------SVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEeccc----------------------------------ccccceeecCCcceEeccchhhheeccc
Confidence 1234455554 6889999999999999999999999995
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-14 Score=137.94 Aligned_cols=226 Identities=16% Similarity=0.228 Sum_probs=170.0
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
..|. .|...|+-|+.|| +|+++.+.-.. -.... +..|-+.-||-.-..+++ .+. -+.+|+.++..+..+=.+..
T Consensus 11 ~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~-~~q-pr~Lkv~~~Kk~~~ICe~~f 86 (391)
T KOG2110|consen 11 IGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVS-IKQ-PRKLKVVHFKKKTTICEIFF 86 (391)
T ss_pred eeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEe-cCC-CceEEEEEcccCceEEEEec
Confidence 4475 7888888888776 57888765433 22222 346778888854433333 221 25689999887765544432
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc---CCCceEEEEEcCCCcEEEEEc---CCeEEEEeCC
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNFR 257 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g---h~~~v~sv~fspdg~~laS~s---D~tIklWd~~ 257 (389)
...+.+|.++ -++|+..=++. |.|+|+++-+++++++. |...+-++++++++-+||-=+ -|.|.|||..
T Consensus 87 -pt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 87 -PTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred -CCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 2788999986 35555554444 99999999999988754 555676777777777998653 6899999996
Q ss_pred -CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe-EEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 258 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 258 -G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t-IklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
-+.+.+++.|.+. +-.++|||||.+||++|+. || ||++++.+|+.+..|+--.-
T Consensus 162 nl~~v~~I~aH~~~-----lAalafs~~G~llATASeK-----------GTVIRVf~v~~G~kl~eFRRG~~-------- 217 (391)
T KOG2110|consen 162 NLQPVNTINAHKGP-----LAALAFSPDGTLLATASEK-----------GTVIRVFSVPEGQKLYEFRRGTY-------- 217 (391)
T ss_pred cceeeeEEEecCCc-----eeEEEECCCCCEEEEeccC-----------ceEEEEEEcCCccEeeeeeCCce--------
Confidence 8889999999987 7999999999999999764 66 79999999999999875330
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ -.|++++||||+++|++.|+-+||++..
T Consensus 218 ----------------~--------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 218 ----------------P--------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----------------e--------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 3899999999999999999999999875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-13 Score=136.37 Aligned_cols=306 Identities=13% Similarity=0.126 Sum_probs=191.2
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
+++...++.+.+.|.+|.+.+.++.... +.-..++|+|||+++..++ .| ..+.++|+.+++. +-
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~----rd------g~vsviD~~~~~~-----v~ 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVAN----RD------GTVSVIDLATGKV-----VA 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEE----TT------SEEEEEETTSSSE-----EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEc----CC------CeEEEEECCcccE-----EE
Confidence 4567779999999999999999998764 5556789999999988853 45 5788999999886 22
Q ss_pred eeecccCceeEEEecCCCeEEEEec-CCCeEEEEeCCCCeEEEEecC---------CcEEEEEEcC-CceEEEEecCCCC
Q 016446 96 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISP-GIMLLIFNRSSSH 164 (389)
Q Consensus 96 ~~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~g~~l~tl~~---------~~V~~vafS~-g~~la~~~~~s~d 164 (389)
+-..-..+..+++| |||++|+.+. .++++.++|.++.+++.++.. ..|.+|..+| ...++.+-.+.
T Consensus 73 ~i~~G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-- 149 (369)
T PF02239_consen 73 TIKVGGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-- 149 (369)
T ss_dssp EEE-SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--
T ss_pred EEecCCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--
Confidence 22333456789998 9999888665 689999999999999988752 2578888885 44344443332
Q ss_pred eeEEEEEcCCCeEEE--EEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcc----cCCCceEEEEE-
Q 016446 165 VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR----TEFMTPSAFIF- 236 (389)
Q Consensus 165 ~tiklWd~~tG~~l~--tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~----gh~~~v~sv~f- 236 (389)
+.|-+-|..+.+.+. .+. ....-....|. |++.+++++ ..+..|-++|.++++.+..+. .|...+..+..
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 345455766655443 322 22333566776 677777775 477799999999998876542 23333332221
Q ss_pred --------cCCCcEEEEE-cCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 237 --------LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 237 --------spdg~~laS~-sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
+..+...++. +...+.+||.. .+.+++++..... .-+.-+||+++|.....- +...+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 2223333333 34566678986 9999999876544 467779999999987211 11248
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC--cE
Q 016446 307 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG--LV 384 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~--tI 384 (389)
+|-++|.++-+.+.++....+ .++.-+.|+|||+.+.-...|+ .|
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred eEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecCCCEE
Confidence 999999999988888864431 2588999999999776655443 58
Q ss_pred EEcc
Q 016446 385 HVWS 388 (389)
Q Consensus 385 rlW~ 388 (389)
.++|
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=139.93 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=158.4
Q ss_pred CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---CeEEEEeCC
Q 016446 55 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLK 131 (389)
Q Consensus 55 dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---~tiklWdl~ 131 (389)
.+..++.++..+... ...+.++|...++ .+.+.. ....+.+.+|| |||+.||..+.+ .+|++||+.
T Consensus 154 ~~~~~~~~~~~~~~~-----~~~l~~~d~~g~~---~~~l~~--~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~ 222 (417)
T TIGR02800 154 FSTRIAYVSKSGKSR-----RYELQVADYDGAN---PQTITR--SREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLA 222 (417)
T ss_pred cCCEEEEEEEeCCCC-----cceEEEEcCCCCC---CEEeec--CCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECC
Confidence 355566655443111 1345566643222 233432 22234568898 999999988754 489999999
Q ss_pred CCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CC
Q 016446 132 NYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE 208 (389)
Q Consensus 132 ~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~ 208 (389)
+|+...... ...+.+++|| +|+.|+.+........|.+||+.+|+.. .+..+........|+ |++.+|+..+. ++
T Consensus 223 ~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g 300 (417)
T TIGR02800 223 TGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGG 300 (417)
T ss_pred CCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCC
Confidence 887543322 3557789999 5777876554444568999999988654 444444445567887 68888887653 33
Q ss_pred --cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC---eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 209 --NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 209 --tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~---tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
.|.++|+.+++..+ +..+...+..++|+|||++|+..+ ++ .|.+||+.+...+.+..+.. ....+|+
T Consensus 301 ~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~------~~~p~~s 373 (417)
T TIGR02800 301 SPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL------DESPSFA 373 (417)
T ss_pred CceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC------CCCceEC
Confidence 57778888877543 444556778889999999999887 65 78899987433344443321 3467899
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|||++|+..+.+. ....+.+.+ .+|+....+..+
T Consensus 374 pdg~~l~~~~~~~--------~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 374 PNGRMILYATTRG--------GRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred CCCCEEEEEEeCC--------CcEEEEEEE-CCCceeeECCCC
Confidence 9999999888652 123567767 457766666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=133.90 Aligned_cols=130 Identities=12% Similarity=0.195 Sum_probs=100.2
Q ss_pred CcEEEEECCC-CeEEEEcc-cCCCceEEEEEcCCCcEEEEE--c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 208 ENLQILDVRN-AELMEVSR-TEFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 208 ~tIklWd~~t-g~~~~~l~-gh~~~v~sv~fspdg~~laS~--s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+...|+-+.. +.....+. ....+|.+++|+|+|+.||.. . ++.|.|||++++.+.++..+ . ++.|.||
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWS 109 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEEC
Confidence 3445555522 22233332 234569999999999987654 4 78999999999999888632 2 5899999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+|++||.|+.+ ...|.|++||+.+.+++.+.. |. .
T Consensus 110 P~G~~l~~~g~~--------n~~G~l~~wd~~~~~~i~~~~-~~-----------------------------------~ 145 (194)
T PF08662_consen 110 PDGRFLVLAGFG--------NLNGDLEFWDVRKKKKISTFE-HS-----------------------------------D 145 (194)
T ss_pred CCCCEEEEEEcc--------CCCcEEEEEECCCCEEeeccc-cC-----------------------------------c
Confidence 999999999864 335889999999999998864 33 5
Q ss_pred EEEEEECCCCCEEEEecC------CCcEEEcc
Q 016446 363 ITSLFYDEERNEIYTGNR------HGLVHVWS 388 (389)
Q Consensus 363 V~svafSpdg~~LaSgs~------D~tIrlW~ 388 (389)
+..++|||||++|+++.. |+.++||+
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 789999999999999984 89999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-15 Score=142.28 Aligned_cols=281 Identities=14% Similarity=0.202 Sum_probs=189.6
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
-.||++.-+|+|||+|..||+.|..+.++. ..++-|.|.-+ ...++++ +.| .+|++||++..... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~----ssD------G~Vr~wD~Rs~~e~-a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-ATTNGVRFISCDSPHGVISC----SSD------GTVRLWDIRSQAES-A 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-CcccceEEecCCCCCeeEEe----ccC------CeEEEEEeecchhh-h
Confidence 458999999999999999999999999986 89999999874 5677774 456 78899998655431 2
Q ss_pred ceeEeeecccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEE
Q 016446 92 FALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 92 ~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklW 170 (389)
+..|+... +- .+..|.- -+++++++|..- ...|-.+.||
T Consensus 109 ~~~~~~~~-~~-~f~~ld~nck~~ii~~GtE~--------------------------------------~~s~A~v~lw 148 (376)
T KOG1188|consen 109 RISWTQQS-GT-PFICLDLNCKKNIIACGTEL--------------------------------------TRSDASVVLW 148 (376)
T ss_pred heeccCCC-CC-cceEeeccCcCCeEEecccc--------------------------------------ccCceEEEEE
Confidence 33444221 11 2355541 156677766310 0112346677
Q ss_pred EcCCCeE-EEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEEcccCCCceEEEEEcCCC--cE
Q 016446 171 SIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN--QL 242 (389)
Q Consensus 171 d~~tG~~-l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh~~~v~sv~fspdg--~~ 242 (389)
|++..+- ++.+. .|..-|..|.|.|.++..|++||-||-|.|+|++.-. ++++ -.|...|..+.|+.++ +
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykr- 226 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKR- 226 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcce-
Confidence 7765554 55544 6788899999998889999999999999999997533 2333 3466789999999888 6
Q ss_pred EEEEc-CCeEEEEeCC-CcEEEEeccCcC-----C-cCCC-CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE-e
Q 016446 243 FLTFR-NRTVAVWNFR-GELVTSFEDHLL-----W-HPDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS-S 312 (389)
Q Consensus 243 laS~s-D~tIklWd~~-G~~l~tl~gh~~-----~-~~~~-~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW-d 312 (389)
|-+-+ ..+.++|+++ |.+...|+...- + ..+| ||-...--.|+.+.+.++.+ ++.++|-.- |
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~--------~n~~~~~~~~~ 298 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD--------SNKGTIFPLVD 298 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc--------cCceeEEEeee
Confidence 44456 9999999997 887666653210 0 0000 12222223467777777654 222333222 2
Q ss_pred CCC---CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 313 ILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 313 ~~t---g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+ ++.++.|+||. .+.|.++.|...+..|+||++||.+.+|.+
T Consensus 299 ~~s~~~~~~~a~l~g~~---------------------------------~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGH---------------------------------EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccccCccccccCCc---------------------------------HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 222 44566666643 168999999999999999999999999974
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=141.14 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=157.1
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+..+. +.+.+..|||||+.|+.++... .. .++.++++.+|+. ..+.. ..+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~---~~l~~--~~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRR---EQITN--FEGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEecCC-CceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCE---EEccC--CCCCc
Confidence 46777875 66667776654 7899999999999999875321 22 4688889888864 22321 22334
Q ss_pred eeEEEecCCCeEEE-EecCCC--eEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLT-YSAQDS--IYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~La-s~s~D~--tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
...+|| |||+.|+ +.+.++ .|.+||+.+++... +. ...+.+..|| +|+.|+..+.......|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 468998 8999887 444454 68888998887533 33 2345678999 688887765444446788899988885
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--e
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--t 250 (389)
.+ +...........|+ |++..++..+ .++ .|.+||+.+|+......+ .......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceE
Confidence 43 33222333456776 7888888765 333 588899999886544332 2334568999999998775 33 4
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|.+.+++|...+.|..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66677778776666644332 46667776
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=148.05 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=149.5
Q ss_pred EEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE
Q 016446 145 QEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 223 (389)
Q Consensus 145 ~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~ 223 (389)
..|||+ +|..||++ +.|+++|+|+...=+.+.....|...|..+.|+ ||++.|++-+.| ..++|++++|.+++.
T Consensus 148 k~vaf~~~gs~latg---g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG---GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeec---cccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 789999 78999886 667999999987777777777788999999999 788888888888 999999999998887
Q ss_pred cc--cCCCceEEEEEcCCC-----cEEEEEc-CCeEEEEeCC---C----cEEEEeccCcCCcCCCCeeEEEECCCCCEE
Q 016446 224 SR--TEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 288 (389)
Q Consensus 224 l~--gh~~~v~sv~fspdg-----~~laS~s-D~tIklWd~~---G----~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l 288 (389)
+. .-.....++.|+-|+ +++++-. -+.|++||+. | ++.+-+..|.. |.+++.|+||+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s------iSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS------ISSLAVSDDGKFL 296 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc------ceeEEEcCCCcEE
Confidence 65 233456778999888 4444445 5677777752 3 33333334432 7999999999999
Q ss_pred EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec-CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE
Q 016446 289 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 367 (389)
Q Consensus 289 aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva 367 (389)
|-|+.| |.|-|.+..+=|+++-.+ .|. .-|+.|.
T Consensus 297 AlGT~d-----------GsVai~~~~~lq~~~~vk~aH~----------------------------------~~VT~lt 331 (398)
T KOG0771|consen 297 ALGTMD-----------GSVAIYDAKSLQRLQYVKEAHL----------------------------------GFVTGLT 331 (398)
T ss_pred EEeccC-----------CcEEEEEeceeeeeEeehhhhe----------------------------------eeeeeEE
Confidence 999875 999999998878877664 354 5899999
Q ss_pred ECCCCCEEEEecCCCcEEE
Q 016446 368 YDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 368 fSpdg~~LaSgs~D~tIrl 386 (389)
|+||.+.+++-|.|.+++|
T Consensus 332 F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EcCCcCcccccccCCceeE
Confidence 9999999999999998876
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=151.35 Aligned_cols=257 Identities=16% Similarity=0.161 Sum_probs=182.1
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC---CcceeEe-eecccCceeEEEecCCC
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFALFE-SESLKWPGFVEFDDVNG 113 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~---~~~~l~~-~~~~~~~~~v~Fs~pdG 113 (389)
|+.- |.+.|+.++|-|=-.-||++ +.| +.+++|.++..+.+ ...++++ ..|.+.|.+|+.+ ++|
T Consensus 289 tl~s-~~d~ir~l~~~~sep~lit~----sed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TLRS-HDDCIRALAFHPSEPVLITA----SED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred eeec-chhhhhhhhcCCCCCeEEEe----ccc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 4443 45899999999988889995 467 67778887221111 1123554 4566777889996 899
Q ss_pred eEEEEecCCCeEEEEeCC------C-Ce---EE--EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 114 KVLTYSAQDSIYKVFDLK------N-YT---ML--YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~------~-g~---~l--~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
+.+-||+.||+||.|++. + +. +. +..|.+.||.+++| --++|+++ +.|+|+|+|+...+.. .+
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cc
Confidence 999999999999999543 1 11 11 22345789999999 45556665 5568999999755444 44
Q ss_pred EeecCCce--eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC-------CCceEEEEEcCCCcEEEEEc-CCe
Q 016446 181 FYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 181 l~~~~~~~--~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh-------~~~v~sv~fspdg~~laS~s-D~t 250 (389)
|..-..+. .+|+|.......+++...-+--.+.|++++.-++++.-. ...+.-|+..|.+.+..++- |++
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 54222222 455554211122222233344455566666666655321 24677888999999999998 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
||+.|.. |+++.....|... |.++||-|+|-+|++++.| +.|++|.+....|+.....|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~d-----------~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSHD-----------GSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecCC-----------ceeehhhccchheeecccccc
Confidence 9999996 9999999999876 7999999999999998765 999999998899998888886
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=148.78 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=128.0
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
.++.++.|...+..++++++.|..||||-+..++ -+..|..|...|+.|.|+|+|.+||||+ +|.|-||.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5677788864444589999999999999876533 3557899999999999999999999999 89999997
Q ss_pred CC--------C---------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 256 FR--------G---------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 256 ~~--------G---------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
.. . ...+.+.+|..- +..++++||+++++++|.| +++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~d-----------ns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSVD-----------NSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeecc-----------ceEEEEEecccee
Confidence 54 2 235688888765 7899999999999999986 7999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
++.+.+|. .-|..+++.|-+|++++=|.|...+
T Consensus 158 ~~~~~dh~----------------------------------~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHE----------------------------------HYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeeccccc----------------------------------cccceeecchhhhhhhhhccCcccc
Confidence 99999998 4888999999999999999887443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=140.25 Aligned_cols=236 Identities=12% Similarity=0.061 Sum_probs=157.0
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+.... +.+.+..|||||+.|+.++... .. .++.++++..|+. ..+.. ..+..
T Consensus 199 ~l~i~d~d-G~~~~~l~~~~-~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~---~~lt~--~~g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLRSP-EPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVR---EKVTS--FPGIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeecCC-CcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCe---EEecC--CCCCc
Confidence 56666875 66566666654 7899999999999999876432 22 4677888887764 22321 12233
Q ss_pred eeEEEecCCCeEEEE-ecCCCe--EEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTY-SAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las-~s~D~t--iklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
...+|| |||+.||. .+.++. |.++|+.+++...... ...+...+|| +|+.|+..+..+....|.++|+.+|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 468998 99998875 455664 7777888777533222 3456788999 6888877654444467888899888754
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tI 251 (389)
+ +..........+|+ |++++|+..+ .++. |-++|+.+|+......+. ...+.+|+|||+.|+..+ ++ .+
T Consensus 344 ~-Lt~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 344 R-LTFEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred E-EecCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 4 33222334556786 7888888865 4454 455788888764433322 233558999999988765 44 36
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
.+++.+|+..+.+..+... +...+|||
T Consensus 420 ~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 6778889888888765443 46777877
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=135.97 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=153.4
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 103 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~ 103 (389)
.+.++|.+ |...+.+..+. ..+.+.+|||||+.|+.++..+ .. .++++|++.+|+. ..+. ...+..
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~-~~------~~i~v~d~~~g~~---~~~~--~~~~~~ 236 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSR-EPILSPAWSPDGQKLAYVSFES-GK------PEIYVQDLATGQR---EKVA--SFPGMN 236 (417)
T ss_pred eEEEEcCC-CCCCEEeecCC-CceecccCCCCCCEEEEEEcCC-CC------cEEEEEECCCCCE---EEee--cCCCCc
Confidence 57777774 66667776654 6799999999999999875432 23 5788899888864 1221 122334
Q ss_pred eeEEEecCCCeEEEE-ecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTY-SAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las-~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
.+++|+ |||+.|+. .+.++ .|.+||+.+++...... ...+...+|+ +|++|+..+..+....|.++|+.+|+.
T Consensus 237 ~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 237 GAPAFS-PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred cceEEC-CCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 568998 89987764 44444 58889998776533222 2345577899 688887765444445788899888775
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCC---cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC---eE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~---tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~---tI 251 (389)
..+..+......+.|+ |++..++.++.++ .|.+||+.+++...... + ......+|+|||+.|+..+ ++ .+
T Consensus 315 ~~l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 RRLTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred EEeecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4455445566778887 7888888887665 89999999877654433 2 2345668999999988876 43 45
Q ss_pred EEEeCCCcEEEEeccC
Q 016446 252 AVWNFRGELVTSFEDH 267 (389)
Q Consensus 252 klWd~~G~~l~tl~gh 267 (389)
.+.+.+|+....+..+
T Consensus 392 ~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 392 GLVSTDGRFRARLPLG 407 (417)
T ss_pred EEEECCCceeeECCCC
Confidence 5556667766666543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=133.57 Aligned_cols=204 Identities=10% Similarity=0.076 Sum_probs=140.0
Q ss_pred ceeEEEecCCCeEEEEecCC---CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D---~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+.+.+|| |||+.||..+.+ ..|.+||+.+|+...... ...+.+.+|| +|++||.+...+.+..|.+||+.+|+.
T Consensus 201 ~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 4568998 999999987754 368899999887543222 3445679999 588887655444446799999998875
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--e
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D--~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--t 250 (389)
. .+..+.....+..|+ |++..|+..+ .+ ..|.++|+.+|+..+.... .......+|+|||+.|+-.+ ++ .
T Consensus 280 ~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred E-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceE
Confidence 4 455554556678887 7888888766 33 4677778888886543221 12334578999999998775 43 5
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|.+||+. |+. +.|.. ... ..+..|||||+.|+-.+.+ +....|.+.++ +|+..+.|..+.
T Consensus 357 l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~-~g~~~~~l~~~~ 417 (430)
T PRK00178 357 VAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSI-NGRVRLPLPTAQ 417 (430)
T ss_pred EEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEECcCCC
Confidence 7788987 553 44542 222 2356899999999987764 12346888886 466666676543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=125.58 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=109.3
Q ss_pred EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE--EecCCCeE
Q 016446 48 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDSIY 125 (389)
Q Consensus 48 ~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La--s~s~D~ti 125 (389)
-.+.|+|.|+.|+.-.....+.=..-......|+.+..-+.. ...+ ....-+.+.+++|+ |+|+.+| +|..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i-~l~~~~~I~~~~Ws-P~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESI-ELKKEGPIHDVAWS-PNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-ccee-eccCCCceEEEEEC-cCCCEEEEEEccCCccc
Confidence 467888888877664431101100011123445555222210 1111 11223347789998 8998864 45568899
Q ss_pred EEEeCCCCeEEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 126 KVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 126 klWdl~~g~~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
.|||++ ++++.++....+..|.||| |++||+++.++..+.|++||+++.+++.+++
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------------------- 142 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---------------------- 142 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----------------------
Confidence 999995 8889999888899999995 8888887655444566777766655555443
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-------CCeEEEEeCCCcEEEEec
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 265 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-------D~tIklWd~~G~~l~tl~ 265 (389)
|. .+..++|||||++|+++. |+.++||+.+|+++....
T Consensus 143 ----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 143 ----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred ----------------------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 22 356788999999999873 789999999999876543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=149.36 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=172.4
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
|+.+.|+ .||+.|+-|+..|-+-..|..++++...+. .+.|.+|+|= ..+++|++.. ..+.++| ..|..|+.
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 6779998 899999999999999999999999999998 6889999999 7889988742 5899999 78999999
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 258 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G 258 (389)
++.| ..+..+.|. |..-.|+++++-|-++--|+.+|+++..++.....+....-+|-.-.+-.|- .|||-+|... -
T Consensus 206 lk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhccc-chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 9876 788999998 4444555578999999999999999999988888888888999999999996 9999999997 7
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.|.-+-.|.++ |.+|||.|+|+|+|+.+.| ..+||||+..=..+.++..
T Consensus 284 ePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~D-----------r~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 284 EPLVKILCHRGP-----VSSIAVDRGGRYMATTGLD-----------RKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred chHHHHHhcCCC-----cceEEECCCCcEEeecccc-----------cceeEeeeccccccceeec
Confidence 777667779888 7999999999999998775 8999999987666655544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=147.63 Aligned_cols=183 Identities=12% Similarity=0.099 Sum_probs=143.3
Q ss_pred ecCCCeEEEEeCC-CCeEE----EEec-CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCe-------EEEEEee
Q 016446 119 SAQDSIYKVFDLK-NYTML----YSIS-DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFYH 183 (389)
Q Consensus 119 ~s~D~tiklWdl~-~g~~l----~tl~-~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~-------~l~tl~~ 183 (389)
++.-|.|-|+++. .|++- -+|. +..|.++++. |.++||.+ .+|+.|+||.+.++- ..+.|+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeec
Confidence 3457899999986 46532 2333 5689999999 58999987 456899999998653 3467889
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc-E
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-L 260 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~-~ 260 (389)
|+..+.++.|.+--.+.|+++++|-||+|||++++.....|.||++.|..+||||||+++||.+ ||+|++++.. ++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999966668888899999999999999999999999999999999999999999999 9999999986 44 3
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
++.=.|-..- + --.|.|-=||++++..+.|+ ++...|-++|.++
T Consensus 756 v~Eg~gpvgt-R---gARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 756 VYEGKGPVGT-R---GARILWACDGRIVIVVGFDK-------SSERQVQMYDAQT 799 (1012)
T ss_pred cccCCCCccC-c---ceeEEEEecCcEEEEecccc-------cchhhhhhhhhhh
Confidence 4322222110 1 13566677999999999885 4456788888653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-12 Score=136.53 Aligned_cols=325 Identities=10% Similarity=0.102 Sum_probs=206.8
Q ss_pred EEee-ccEEEEEecCceEEEEecccce---eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 9 IVAA-RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 9 i~~~-~~~~a~~~~~gtiklW~~~tg~---~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
|++. .-.++...++..+-+|+..++. +.+....+|...+.++++||.+..+|+ +..| .+|.+|. .
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa----~d~d------GrI~vw~-d 234 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA----GDSD------GRILVWR-D 234 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE----eccC------CcEEEEe-c
Confidence 4444 3335555666777788876533 233345556666899999999999888 4455 5688886 3
Q ss_pred cC--CCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEe
Q 016446 85 RG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 85 ~g--~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~ 159 (389)
-| +-..+..+|. =|-.-+.+++|| +||.+|.||+..+-+-+|.+++++ .+-|+ +..|..+++| |+...+...
T Consensus 235 ~~~~~~~~t~t~lH-WH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 235 FGSSDDSETCTLLH-WHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred cccccccccceEEE-ecccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 33 1112333432 111135679999 899999999999999999999998 33344 6899999999 566555543
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCc-----------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---- 224 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~-----------~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l---- 224 (389)
.|+.|.|-...+=+...+..|-... ...+.+. |....++.-+..++|++||+.+-+.+..+
T Consensus 312 ---~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 312 ---EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred ---cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence 3577888776655555555432222 2344544 34567777889999999999886654332
Q ss_pred -c------cCCCceEEEEEcCCCcEEEEEc---------CC--eEEEEeCCCc----EEEEeccCcCCcCCCCeeEEEEC
Q 016446 225 -R------TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE----LVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 225 -~------gh~~~v~sv~fspdg~~laS~s---------D~--tIklWd~~G~----~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+ -+.-.+.+++++-.|..++|.- || .+|.|-.++. .|.|-- ..||.++.|-.+.++
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I--~~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI--NNPHGNAFVATIFLN 465 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE--ecCCCceeEEEEEec
Confidence 1 2334688899999999999862 33 5789987532 222221 233444545556666
Q ss_pred CCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccC
Q 016446 283 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 361 (389)
Q Consensus 283 pdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
|-.. ..++++. ||.+|||-+..-+-+ ..|. + -|.-.-+ -.+|-.
T Consensus 466 ~~rs~~~vta~~-----------dg~~KiW~~~~~~n~---~k~~-------------s-----~W~c~~i---~sy~k~ 510 (792)
T KOG1963|consen 466 PTRSVRCVTASV-----------DGDFKIWVFTDDSNI---YKKS-------------S-----NWTCKAI---GSYHKT 510 (792)
T ss_pred CcccceeEEecc-----------CCeEEEEEEeccccc---CcCc-------------c-----ceEEeee---eccccC
Confidence 6544 7788765 599999986432211 1111 0 0100000 001235
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 362 DITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
++.+++||.||. |.+.|.|++|.+||.
T Consensus 511 ~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 511 PITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred cccchhhcCCCc-EEEEecCCEEEEecC
Confidence 899999999995 666778999999983
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-14 Score=150.57 Aligned_cols=264 Identities=10% Similarity=0.035 Sum_probs=193.3
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.++|.+++ ---+.+++...|..++-+...+-..+. .+.|+..+- +..-++..+..++..++.++..
T Consensus 17 ~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~---------~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 17 SDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLL---------SGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred cceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceec---------cceEEEEEeecceeecchhhhh
Confidence 56776664 446779999889888887776544455 445553322 3333455555555555442211
Q ss_pred eeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-C-----cEEEEEEcC-CceEEEEecCCCCe
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQEIKISP-GIMLLIFNRSSSHV 165 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~-----~V~~vafS~-g~~la~~~~~s~d~ 165 (389)
. .....|+..-.|. -+.+.++....+..+-+||.+.+..++.... + ...-+-+|+ --++++++. -+
T Consensus 83 ~---~~~s~wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~ 155 (967)
T KOG0974|consen 83 I---ERFSDWIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FG 155 (967)
T ss_pred h---hhccccccccchh-hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cc
Confidence 1 1223344444444 3456777777888999999988887766653 2 233455663 445555432 36
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEE
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~la 244 (389)
.|-+|+..--+.-..+.+|.+.++++.++ .++.++++.|+|.+||+|++++++.+. +.=||+..||.+.|+|+ +++
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 89999987322223588999999999998 689999999999999999999998776 77799999999999999 899
Q ss_pred EEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 245 TFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 245 S~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
|++ |-|.++|+.+|+.+.++++|...+ ++.++..++.-.+++++. |+++|+||+.+
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 999 999999999999999999999876 899999999999998765 59999999763
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-13 Score=124.58 Aligned_cols=199 Identities=11% Similarity=0.023 Sum_probs=136.6
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCC---------Ce-EEEEe--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEc
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~---------g~-~l~tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~ 172 (389)
+-+.| |-+|+|+.|..+|+|-+..++. |+ .+.+. |...|..++|.+.-.| ++ .|+.||=|-.
T Consensus 15 ~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Ll-s~----gdG~V~gw~W 88 (325)
T KOG0649|consen 15 AQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLL-SG----GDGLVYGWEW 88 (325)
T ss_pred HHhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhee-ec----cCceEEEeee
Confidence 35676 7799999999999999998753 33 23333 3568999999966555 43 3478887764
Q ss_pred CCCeE------EEE--EeecC-----CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE-cC
Q 016446 173 EDGTV------LKV--FYHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LY 238 (389)
Q Consensus 173 ~tG~~------l~t--l~~~~-----~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f-sp 238 (389)
..-+. +-. .+.|. ..++++-.. |....++.++.|+.|.-||+++|+..++++||++.|.+|+- +.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 32111 111 11222 233444444 33445555559999999999999999999999999999999 67
Q ss_pred CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc---CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 239 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~---~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.+|. .||+ |||+||||.. ++++++++--..+. |+..-|--|.--|..+|++|+. ..+-||++
T Consensus 168 ~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------------p~lslwhL 234 (325)
T KOG0649|consen 168 NGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------------PKLSLWHL 234 (325)
T ss_pred Ccce-eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------------CceeEEec
Confidence 7775 4777 9999999996 99999887432210 0001122344456778888764 46889999
Q ss_pred CCCeEEEEec
Q 016446 314 LTGKCLAKIN 323 (389)
Q Consensus 314 ~tg~~l~tl~ 323 (389)
..-+|..++.
T Consensus 235 rsse~t~vfp 244 (325)
T KOG0649|consen 235 RSSESTCVFP 244 (325)
T ss_pred cCCCceEEEe
Confidence 9888777664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=136.53 Aligned_cols=192 Identities=15% Similarity=0.229 Sum_probs=138.7
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
++....|||+ +||..||+++.||++|+|+..+-+.+.... +..|.++.|| ||+.||+-+. | ..++|++++|-
T Consensus 144 ~g~~k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 144 FGQQKVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGA 218 (398)
T ss_pred cCcceEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCc
Confidence 3444569998 899999999999999999976666554443 5799999999 6778887643 3 79999999999
Q ss_pred EEEEEeec-CC-ceeEEEEEecCC---C-eEEEEe-CCCcEEEEECCC--C----eEEEEcccCCCceEEEEEcCCCcEE
Q 016446 177 VLKVFYHL-LH-RNKKVDFIEQFN---E-KLLVKQ-ENENLQILDVRN--A----ELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 177 ~l~tl~~~-~~-~~~~v~f~~~~~---~-~l~~~s-~D~tIklWd~~t--g----~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
++++++.. .. ....+.|+ .++ . ++++.. .-+.|++||+.. + +..+.+.. ...+.+++.|+||+++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFL 296 (398)
T ss_pred hhhhcCCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEE
Confidence 98887621 11 12566776 333 2 333332 456667666532 2 22222233 3479999999999999
Q ss_pred EEEc-CCeEEEEeCC-CcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 244 LTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|-|+ ||.|-|.+.. =++++ .-+.|... |..|.|+||-+++++-|.| .+++|--+.
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~~svSs~-----------~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYLASVSSD-----------NEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCcccccccC-----------CceeEEEEe
Confidence 9999 9999999996 55544 44567765 8999999999999997664 566666543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=134.86 Aligned_cols=203 Identities=10% Similarity=0.108 Sum_probs=137.0
Q ss_pred ceeEEEecCCCeEEEEecCCC---eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~---tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+.+.+|| |||+.||..+.+. .|.+||+.+|+...... .....+.+|| +|+.||.+........|.++|+.+|+.
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 3468998 9999999876532 68888998887532211 2334578999 688887764444445688899988875
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc--CCeE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRTV 251 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s--D~tI 251 (389)
. .+..+........|+ |++..|+..+ .++ .|.++|+.+|+..+. +.++ .....+|+|||++|+-.+ ++..
T Consensus 299 ~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 299 T-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred E-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCce
Confidence 4 455444556778898 7888888765 344 466668888886553 2333 334578999999988765 5545
Q ss_pred EE--EeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 252 AV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 252 kl--Wd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+| +|+. |+. +.+.... . ..+..|+|||++|+-.+.+. ....+.++|+ +|+..+.|..+.
T Consensus 375 ~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~~--------g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 375 NIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTYQ--------GKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEecC--------CceEEEEEEC-CCCceEECcCCC
Confidence 55 5776 543 4454331 1 23568999999998876541 2245888895 688888887665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-12 Score=128.52 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=195.8
Q ss_pred cCceEEEEecccceeeeeeecCC--cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee
Q 016446 21 HSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 98 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~--~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~ 98 (389)
.+-.+.+|+.-.-+...+..... ....+..++|++|+..|.+ .+ ..++|.+...++. +++..
T Consensus 9 sSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-----~~------~~v~i~~~~~~~~-----~lt~~ 72 (566)
T KOG2315|consen 9 SSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-----DN------QVVKVFEIATLKV-----VLCVE 72 (566)
T ss_pred ccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-----cC------CeEEEEEccCCcE-----EEEec
Confidence 35567788865323333333331 3568899999999988873 44 6788888877764 45544
Q ss_pred cccCceeEEEecCCCeEEEEec-----CC-----CeEEEEeCCCCeEEEEec---CCcEEEEEEcCCceEEEEecCCCCe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSA-----QD-----SIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHV 165 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s-----~D-----~tiklWdl~~g~~l~tl~---~~~V~~vafS~g~~la~~~~~s~d~ 165 (389)
.. ....+.|| |-|.+|.+=- .| -.+++|+++++.....++ +.. |...||++..|++--.. +
T Consensus 73 ~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~---n 146 (566)
T KOG2315|consen 73 LK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVS---N 146 (566)
T ss_pred cc-eeeeeeec-ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhc---c
Confidence 44 66789998 8898887532 23 346699999977666664 222 68999955544332222 4
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC----------------------------------------------
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE---------------------------------------------- 199 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~---------------------------------------------- 199 (389)
.++++++..-+... -+.|..++....++ |.++
T Consensus 147 ev~f~~~~~f~~~~-~kl~~~~i~~f~lS-pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~ 224 (566)
T KOG2315|consen 147 EVQFYDLGSFKTIQ-HKLSVSGITMLSLS-PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMK 224 (566)
T ss_pred eEEEEecCCcccee-eeeeccceeeEEec-CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEE
Confidence 67888865422110 01233444444444 2111
Q ss_pred -------eEEEE--eCC---------CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc---CCeEEEEeCCC
Q 016446 200 -------KLLVK--QEN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRG 258 (389)
Q Consensus 200 -------~l~~~--s~D---------~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~tIklWd~~G 258 (389)
.|+.. --| .++.+.+.++-+|+--| .-.++|.+|.|+|.|+-++... --++-|+|++|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 11111 122 35666666522333322 2367999999999998888763 77999999999
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
..+..|- .++ =+.+.|||.|++|+-++.++ --|.|-+||+.+-++|.++..-.
T Consensus 304 ~~v~df~--egp-----RN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~n~K~i~~~~a~~------------ 356 (566)
T KOG2315|consen 304 KPVFDFP--EGP-----RNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVPNRKLIAKFKAAN------------ 356 (566)
T ss_pred CEeEeCC--CCC-----ccceEECCCCCEEEEeecCC--------CCCceEEEeccchhhccccccCC------------
Confidence 9998774 333 27999999999999999863 45899999999999999987643
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCCCCEEEEec------CCCcEEEcc
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN------RHGLVHVWS 388 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs------~D~tIrlW~ 388 (389)
-+-+.|+|||++++++. -|+-+|||+
T Consensus 357 ------------------------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 357 ------------------------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ------------------------ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34489999999999988 389999996
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=126.96 Aligned_cols=203 Identities=10% Similarity=0.066 Sum_probs=131.9
Q ss_pred eeEEEecCCCeE--EEEec-CC--CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC--CCCeeEEEEEcCC
Q 016446 104 GFVEFDDVNGKV--LTYSA-QD--SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS--SSHVPLKILSIED 174 (389)
Q Consensus 104 ~~v~Fs~pdG~~--Las~s-~D--~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~--s~d~tiklWd~~t 174 (389)
.+-+|| |||+. ++.-| .+ ..|.+.++.+|+...... .......+|| ||++||..+.. ..|..+.+|++.+
T Consensus 188 ~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 346898 99975 33233 23 356677888877432222 3345578999 68888876532 3355677788876
Q ss_pred C---eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 175 G---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 175 G---~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~--~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
| +..+.+.++.+...+..|+ ||+.+|+..+ .++..+||.+ .. +...+.+..+...+...+|||||+.|+..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 3 4444443333444678887 7888888866 6777777754 32 333455555556778899999999998764
Q ss_pred --C--CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 248 --N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 248 --D--~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ ..|.+||+. |++ +.|...... +.+..|||||++|+-.+.+ .....|.+||+.+|+.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~-~~Lt~~~~~-----~~~p~wSpDG~~L~f~~~~--------~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRD-YQLTTSPEN-----KESPSWAIDSLHLVYSAGN--------SNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCe-EEccCCCCC-----ccceEECCCCCEEEEEECC--------CCCceEEEEECCCCCEEEee
Confidence 3 379999997 655 444433222 4689999999999865433 23468999999877754433
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-12 Score=132.44 Aligned_cols=256 Identities=10% Similarity=0.069 Sum_probs=178.9
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEe------cCCcEEEEE
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSI------SDKHVQEIK 148 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl------~~~~V~~va 148 (389)
.+.||++...- .-...| +....+..++|+|-+..+||.|..+|+|-+||+..+.. ...+ |...|..|.
T Consensus 223 ~~~vW~~~~p~--~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNPN--TPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCCC--CceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 57788886541 112233 34444567999977889999999999999999986664 3222 135677766
Q ss_pred Ec--C-CceEEEEecCCCCeeEEEEEcCC------CeEEEEEe------ecCCceeEEEEEecCCCeEEEEeCCCcEEE-
Q 016446 149 IS--P-GIMLLIFNRSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI- 212 (389)
Q Consensus 149 fS--~-g~~la~~~~~s~d~tiklWd~~t------G~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl- 212 (389)
.- + +.-+++++ .|+.|..|++.- +.++.... .-...+..+.|.+-++..+++|.++|.|.-
T Consensus 299 W~~~~~~~~f~s~s---sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLS---SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEEe---cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 65 2 44566664 368999998753 22222222 112345889998777889999999999876
Q ss_pred --EECCCCe-----EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 213 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 213 --Wd~~tg~-----~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
++.+.+. .+.++..|.+.|+++-++|-+..+..++ |-+||||.-. -..+..++.+... |.++++|
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWS 450 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWS 450 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEc
Confidence 3443333 2446778999999999999988777666 9999999864 4456667666654 7999999
Q ss_pred CCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 283 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 283 pdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
|--- .+|++.. ||.|.|||+..-.+ +.+..-+.
T Consensus 451 ptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~--------------------------------- 486 (555)
T KOG1587|consen 451 PTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS--------------------------------- 486 (555)
T ss_pred CcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc---------------------------------
Confidence 9653 4444433 69999999875332 22222221
Q ss_pred cCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 360 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 360 ~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+.++|+|+.|+.|...|++++|+.
T Consensus 487 -~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 487 -PALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -cccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 46777899999999999999999999863
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=127.85 Aligned_cols=239 Identities=7% Similarity=-0.004 Sum_probs=150.4
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEE--EEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT--VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s--~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
.+.+.|.+ |...+.|.... +.+.+=+|||||+.++. +|... .. .++.+.++..|+. ..+- ...+
T Consensus 166 ~l~~~d~d-G~~~~~lt~~~-~~~~sP~wSPDG~~~~~~y~S~~~-g~------~~I~~~~l~~g~~---~~lt--~~~g 231 (428)
T PRK01029 166 ELWSVDYD-GQNLRPLTQEH-SLSITPTWMHIGSGFPYLYVSYKL-GV------PKIFLGSLENPAG---KKIL--ALQG 231 (428)
T ss_pred eEEEEcCC-CCCceEcccCC-CCcccceEccCCCceEEEEEEccC-CC------ceEEEEECCCCCc---eEee--cCCC
Confidence 45566665 66666676654 67788899999987433 44322 22 5777788877763 2232 1233
Q ss_pred CceeEEEecCCCeEEEEecC-----CCeEEEEeCCCC---eEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNY---TMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g---~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
.....+|| |||+.||..+. |-.+.+|++.++ +....... ....+.+|| ||+.|+..+..+....|.+.
T Consensus 232 ~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFS-PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEEC-CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34568998 99999886553 334566887653 33333322 345678999 68888876533222234444
Q ss_pred EcCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 171 SIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 171 d~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~---D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
++.. |...+.+..+...+....|+ |++++|+..+. ...|.+||+.+|++.+...+ ...+...+|+|||+.|+-.
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ECcccccceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEE
Confidence 5432 34455565544566778887 78988887653 35799999999988665443 3467789999999988744
Q ss_pred -c---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 247 -R---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 247 -s---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
. ...|.+||++ |+..+ |...... +...+|||-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~-----~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRK-IVIGSGE-----KRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEE-eecCCCc-----ccCceecCCC
Confidence 2 3578888997 54433 3322222 4567788754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-12 Score=133.71 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=174.7
Q ss_pred EEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC--CCeEEEEecCCCeEE
Q 016446 49 SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYK 126 (389)
Q Consensus 49 sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p--dG~~Las~s~D~tik 126 (389)
--.||+|++.|+.. .+ ..+.++.+.+|++.. .| .++.....++.+.+. +--++..++.||+|+
T Consensus 21 ~avfSnD~k~l~~~----~~-------~~V~VyS~~Tg~~i~--~l--~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC----TG-------NFVKVYSTATGECIT--SL--EDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred ccccccCCcEEEEe----eC-------CEEEEEecchHhhhh--hc--ccccCccceeeecCCCccceEEEEEecCccEE
Confidence 34799999999883 23 578889999999842 22 234444556777632 224677999999999
Q ss_pred EEeCCCCeEEEEec-CCcEEEEEEcC----CceEEEEecC----------CCCeeEEEEEcCC--CeEEEEEeecCCcee
Q 016446 127 VFDLKNYTMLYSIS-DKHVQEIKISP----GIMLLIFNRS----------SSHVPLKILSIED--GTVLKVFYHLLHRNK 189 (389)
Q Consensus 127 lWdl~~g~~l~tl~-~~~V~~vafS~----g~~la~~~~~----------s~d~tiklWd~~t--G~~l~tl~~~~~~~~ 189 (389)
+||...+.++.++. +-.|.+..+.| -...+.-+.. ..-.+++-..+.+ +.....+..|.- -.
T Consensus 86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~ 164 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PK 164 (792)
T ss_pred EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Cc
Confidence 99999999999886 34555555532 1112211111 0001111111111 000011111111 13
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-----cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC-----
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG----- 258 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-----l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G----- 258 (389)
.|.++ + .+.+..--.+..+.+|++.++. ..+ -..|...+..++|||.++++|++- ||.|.+|.--|
T Consensus 165 ~I~~~-~-~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 165 SIVDN-N-SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred cEEEc-C-CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 34443 2 3344444577889999998865 222 245777889999999999999997 99999998544
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 338 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~ 338 (389)
+-.++|.=|... |++++||+||-+|.||+. .+-+-+|.+.|++ -+-|.-=.
T Consensus 242 ~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~-kqfLPRLg------------ 292 (792)
T KOG1963|consen 242 ETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK-KQFLPRLG------------ 292 (792)
T ss_pred ccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC-cccccccC------------
Confidence 223445445544 899999999999999876 4889999999887 33332211
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
.+|..+.+|||+...+..-+|+.|.|
T Consensus 293 ----------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 ----------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ----------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 59999999999999999999999876
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-12 Score=124.81 Aligned_cols=184 Identities=11% Similarity=0.162 Sum_probs=142.5
Q ss_pred eEEEEecCCC--eEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CCcee
Q 016446 114 KVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNK 189 (389)
Q Consensus 114 ~~Las~s~D~--tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~~~ 189 (389)
.+||-.+.+. .+|+-+.+.+..+-.+. ...|.+|++.-..+++.- .. .|.+.|+.+=++|+|+..- .+...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~L-ee----~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCL-EE----SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEE-cc----cEEEEecccceeehhhhccCCCccc
Confidence 3555555444 48999988777665554 578999999976666544 22 4999999999999999743 22333
Q ss_pred EEEEEecC-CCeEEE-Ee-CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC-eEEEEeCC-CcEEEE
Q 016446 190 KVDFIEQF-NEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTS 263 (389)
Q Consensus 190 ~v~f~~~~-~~~l~~-~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~-tIklWd~~-G~~l~t 263 (389)
-.|+++.. +-+++- ++ .-|.|.|||+.+-+...+++.|...+-+++|+|+|.+|||+| .| -||+..+. |+.+..
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 55555222 236666 44 669999999999999999999999999999999999999999 66 57999995 999999
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
|+--.-+ +.|.+++||||+++|++.|. -+||.|+-+.+-
T Consensus 212 FRRG~~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred eeCCcee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 9855444 35899999999999998754 489999998643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=137.21 Aligned_cols=262 Identities=13% Similarity=0.138 Sum_probs=175.4
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-------CeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-------g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
+++...+..++-++|++.+++|||.|||||+||+.. .++..+++ +..|..|.+. .|+.+|.+ +.|+.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGS 1121 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCe
Confidence 455555566788778889999999999999999742 12334444 6789999999 68999887 45688
Q ss_pred EEEEEcCC-------CeEEEEEeecC-Cce-eEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEE
Q 016446 167 LKILSIED-------GTVLKVFYHLL-HRN-KKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAF 234 (389)
Q Consensus 167 iklWd~~t-------G~~l~tl~~~~-~~~-~~v~f~~~~~~-~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv 234 (389)
|++-++.- +++.+....+. +.+ .--+|...... .++.+-.-+-|..||+++.+-..+++ -..+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 98888764 22222222111 111 22233222233 44446678899999998877655542 345689999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEE---ECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY---ITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~---fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
+.+|.++.++.|. -|.+-+||++ +.++...+ |....+ ++-|. +.|..-..++++. +..+-|-
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~---i~~v~~~~~~~~~S~~vs~~~---------~~~nevs 1268 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAP---IRHVWLCPTYPQESVSVSAGS---------SSNNEVS 1268 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeeccc-CcccCC---cceEEeeccCCCCceEEEecc---------cCCCcee
Confidence 9999999999997 9999999998 99888776 222111 44444 4455567887764 1347899
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+|++++|.|-++|..-++.|..-.+.++...-+ +.- -.....++..-+..+.+|+.|..||.||.
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~k--------------p~~-~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARK--------------PDS-LAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCC--------------CCc-ccceeeecccCCceeeecCCccceeeccC
Confidence 999999999999987644333323333321100 111 23334555666678999999999999983
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-11 Score=135.80 Aligned_cols=253 Identities=14% Similarity=0.181 Sum_probs=167.0
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC----------------CcEEEEEEc-CCceEEEEecC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~----------------~~V~~vafS-~g~~la~~~~~ 161 (389)
.+..|..|++++.+|.+.++-+..+.|+++|. +|+.+..+.. +.-..|+|. +++.|.++...
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 34567789998447889999999999999997 5665544321 124789998 57777776433
Q ss_pred CCCeeEEEEEcCCCeEEEEEeec-----------------CCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEE
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEV 223 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~-----------------~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~ 223 (389)
.+.|+..|+.+|. +.+|.+- ...-+.|+|. |+++.+.+ -..+++|++||..+|.+...
T Consensus 645 --n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 --NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred --CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3789999987764 5555321 0122578887 54555544 56899999999988876432
Q ss_pred c--------cc------CCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-CcEEEEecc--------------CcCC--
Q 016446 224 S--------RT------EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFED--------------HLLW-- 270 (389)
Q Consensus 224 l--------~g------h~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G~~l~tl~g--------------h~~~-- 270 (389)
. .+ ....++.++|+|||+ ++++.+ +++|++||++ |+.. .+.+ +.+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchh
Confidence 1 11 123567899999998 555666 8999999996 5421 1110 0000
Q ss_pred -cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 271 -HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 271 -~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
.....-..|+|+|||+++++-+. +++|++||..++++. ++-|.-. ..+.+|.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~-----~G~~dG~---------- 852 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGK-----AGFKDGK---------- 852 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCC-----cCCCCCc----------
Confidence 00000158999999998887654 489999998877765 4444220 0011110
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+.....|+++|||+.+++-+.+++||+||.
T Consensus 853 -----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 -----ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred -----ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 11223356789999999999999999999999973
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-10 Score=114.40 Aligned_cols=273 Identities=15% Similarity=0.093 Sum_probs=170.0
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
++..+++|.+++.+|.+..+|..+|+.+-..+... ....+++. ++..++. +..+ ..+..+|..+|+.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v----~~~~------g~l~ald~~tG~~ 127 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGGLVFV----GTEK------GEVIALDAEDGKE 127 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCCEEEE----EcCC------CEEEEEECCCCcE
Confidence 45558899999999999999998999887666542 22233333 4566655 3345 5666677788887
Q ss_pred CCcceeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-CcEE------EEEEcCCceEEEEec
Q 016446 89 DSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------EIKISPGIMLLIFNR 160 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~------~vafS~g~~la~~~~ 160 (389)
+|.....+.+.+ .... ++++ ..++.|+.+..||+++|+.+..... .... +.++. +..+..+.
T Consensus 128 -----~W~~~~~~~~~~~p~v~--~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~- 197 (377)
T TIGR03300 128 -----LWRAKLSSEVLSPPLVA--NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGF- 197 (377)
T ss_pred -----eeeeccCceeecCCEEE--CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEEC-
Confidence 565332221111 1221 4544 4467799999999999999877652 2221 11222 33454443
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCC-------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 232 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~-------~~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~ 232 (389)
.++.+.-+|+++|+.+.+...... +...+...+ ..++.+.+++.++.+..+|.++|+.+-..+... ..
T Consensus 198 --~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~ 273 (377)
T TIGR03300 198 --AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQ 273 (377)
T ss_pred --CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--cc
Confidence 346899999999998876542110 000111110 136788888899999999999999876544211 11
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 233 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 233 sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
..+. .++++++...||.+..+|.. |+.+-..+.-.... ..+.++ .|.+|..++. ||.|.++
T Consensus 274 ~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~~ 335 (377)
T TIGR03300 274 GPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHWL 335 (377)
T ss_pred CceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEEE
Confidence 1221 24444444449999999996 98876543211110 122222 4667777765 4999999
Q ss_pred eCCCCeEEEEecCCC
Q 016446 312 SILTGKCLAKINATN 326 (389)
Q Consensus 312 d~~tg~~l~tl~gH~ 326 (389)
|..+|+.+.+++.+.
T Consensus 336 d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 336 SREDGSFVARLKTDG 350 (377)
T ss_pred ECCCCCEEEEEEcCC
Confidence 999999999998665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-12 Score=135.78 Aligned_cols=236 Identities=18% Similarity=0.224 Sum_probs=168.8
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-----CcEEEEEEc---CCceEEEEecCCCCeeEEEEEc-C
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKIS---PGIMLLIFNRSSSHVPLKILSI-E 173 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-----~~V~~vafS---~g~~la~~~~~s~d~tiklWd~-~ 173 (389)
+..+.|+ |=...++.+.....|++||-+.++++..++. ..|.++.+= |..+|+++ +.|+.||||+- .
T Consensus 1067 pk~~~~h-pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta---s~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFH-PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA---SSDGVIRIWKDYA 1142 (1387)
T ss_pred Cceeeec-CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee---ccCceEEEecccc
Confidence 5668887 6677888888888999999999999887762 478888776 35566665 55689999963 2
Q ss_pred CC----eEEEEE---eecCCc----eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEE-cCCC
Q 016446 174 DG----TVLKVF---YHLLHR----NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIF-LYEN 240 (389)
Q Consensus 174 tG----~~l~tl---~~~~~~----~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~f-spdg 240 (389)
++ +++.-. .++... -.-++|. +..++|+++++=..|||||...-.+++-+ .+-...|+++.- .+.|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 32 222222 222111 1334443 45678999988999999999877766654 444456666633 4668
Q ss_pred cEEEEEc-CCeEEEEeCC-C---cEEEEeccCcCCcCCCCeeEEEECCCCCE-EEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 241 QLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~-laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
.++|.|- ||.||++|.+ . .++...+.|+.+.+ |..+.|-+.|-- |+|||.| |.|++||++
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~~-----------G~I~~~DlR 1287 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQD-----------GDIQLLDLR 1287 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeeccC-----------CeEEEEecc
Confidence 8999997 9999999985 2 36888899998743 688899887766 9998764 999999997
Q ss_pred CCeEEEE--ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 315 TGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 315 tg~~l~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
....... +..|-. -| ..++++..+++..+||||+. +.|+||+.
T Consensus 1288 ~~~~e~~~~iv~~~~------------yG-------------------s~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWE------------YG-------------------SALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cCcccccceeeeccc------------cC-------------------ccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 5322222 222220 00 25899999999999999999 99999973
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-11 Score=118.41 Aligned_cols=288 Identities=9% Similarity=0.023 Sum_probs=178.0
Q ss_pred EEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
+.|+ |.++.+.++||.+.++|+.+++.++++... ..-+++++||||++|+.+.. .+ .++.+.|.++.
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~---~~------~~v~v~D~~tl 110 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANY---EP------GTVSVIDAETL 110 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEE---ET------TEEEEEETTT-
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEec---CC------CceeEeccccc
Confidence 4556 788999999999999999999999999986 45789999999999988643 23 56777777776
Q ss_pred CCCCcceeEeee---cccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEE--EEec-CCcEEEEEEc-CCceEEEE
Q 016446 87 KPDSGFALFESE---SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML--YSIS-DKHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 87 ~~~~~~~l~~~~---~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l--~tl~-~~~V~~vafS-~g~~la~~ 158 (389)
++....+.-... ....+.+|..+ |... ++++-=.-+.|-+=|..+.+.+ ..+. +..-.+..|+ ++.+++++
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred cceeecccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeec
Confidence 652211111000 01123356676 6666 4444433355555576665533 3444 5678889999 57777776
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEee-cCCce-eEEE---------EEecC-CCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYH-LLHRN-KKVD---------FIEQF-NEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~-~~~~~-~~v~---------f~~~~-~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
...+ ..|-++|+++++....+.. ...+- .-.. |.... +...++.-....+.+||..+.+.++++..
T Consensus 190 ~~~s--n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 190 ANGS--NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EGGG--TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred cccc--ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 5443 5899999999998887642 11111 1111 11111 11221222334666899999999999887
Q ss_pred CCCceEEEEEcCCCcEEEEE---c--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 227 EFMTPSAFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~---s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
.... .-+.-+||++++... + .++|.++|.+ -+.+.++...... .+..+.|+|||+++-.+..+
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h~ef~~dG~~v~vS~~~------ 336 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVVHMEFNPDGKEVWVSVWD------ 336 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE-------
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEeccEECCCCCEEEEEEec------
Confidence 7666 566779999999988 3 5799999997 7888888744331 15789999999988777765
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecC
Q 016446 301 MEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.++.|.++|..|.++++.+..
T Consensus 337 ---~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 337 ---GNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp ----TTEEEEEETTTTEEEEEEE-
T ss_pred ---CCCEEEEEECCCcEEEEEEEe
Confidence 245999999999999999873
|
... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-11 Score=111.55 Aligned_cols=240 Identities=11% Similarity=0.181 Sum_probs=162.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC--CCcceeEe-eecccCceeEEEecCCCeEEEEecC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~--~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
+.|.+-++||-+++|+.++.| .++.+..+ -.+..|.. -...+++. +.+-+.+++++|. ...|.||+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~-----G~iav~sl--~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g- 79 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLF-----GDIAVLSL--KSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG- 79 (325)
T ss_pred HHHHHHhhCCcceEEEEecCC-----CeEEEEEe--hhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-
Confidence 456677899999998885433 33333322 22222211 11123555 5677778899996 34777776
Q ss_pred CCeEEEEeCCCCe------EEEEec----C-----CcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 122 DSIYKVFDLKNYT------MLYSIS----D-----KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 122 D~tiklWdl~~g~------~l~tl~----~-----~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
||.||=|--+.-. .+.... . -.|+++-.-| +..|.+ +.|+.+.-||+++|+..++++||
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A----gGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA----GGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe----cCCeEEEEEEecCCEEEEEEcCC
Confidence 5999998754322 122221 1 2566666664 555543 35789999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc---------C-CCceEEEEEcCCCcEEEEEcCCeEEEE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---------E-FMTPSAFIFLYENQLFLTFRNRTVAVW 254 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g---------h-~~~v~sv~fspdg~~laS~sD~tIklW 254 (389)
++-+.+|.-- .....+++|++|||+||||.+|++++++++. | ..+|-+++- +...|+.|.-..+-||
T Consensus 156 tDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 156 TDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLW 232 (325)
T ss_pred cceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEE
Confidence 9999999973 3468999999999999999999999998743 2 224555544 4556888877788899
Q ss_pred eCC-CcEEEEec--cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 255 NFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 255 d~~-G~~l~tl~--gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
++. -++.++|. +| |..|.| +.+.+++++.- +.|.-|.+ .|.+-...++
T Consensus 233 hLrsse~t~vfpipa~--------v~~v~F--~~d~vl~~G~g-----------~~v~~~~l-~Gvl~a~ip~ 283 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPAR--------VHLVDF--VDDCVLIGGEG-----------NHVQSYTL-NGVLQANIPV 283 (325)
T ss_pred eccCCCceEEEecccc--------eeEeee--ecceEEEeccc-----------cceeeeee-ccEEEEeccC
Confidence 996 77766664 44 567777 44556666532 68989985 4777666654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=140.70 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=150.4
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEE--ecCCCeEEEEeCCCcEEEEECC
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFI--EQFNEKLLVKQENENLQILDVR 216 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~--~~~~~~l~~~s~D~tIklWd~~ 216 (389)
+||..-.+. ...++|..... +.+-|||...+..+..+..- ... ...... .+..=++++|+.=+.|-+|+..
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~---ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSR---NSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred ccccccchhhhcceEEEEEcC---ceEEEEecccCceehhcCCC-ceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 566666666 66666665433 67889998887777665521 111 111111 1223467778888999999987
Q ss_pred CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 217 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 217 tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
--+.-..+.||.+.+.++.+|-||++++|.| |++||+|+++ ++.+. +.=||... ||.+.|.|+ +|++++.
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVGE 236 (967)
T ss_pred ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEecc
Confidence 4333336899999999999999999999999 9999999996 77655 77799987 899999999 9999876
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
| -|.|+|+. .|+.+.++.+|.. +.||.++.+++-.
T Consensus 237 d-----------ctcrvW~~-~~~~l~~y~~h~g---------------------------------~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 237 D-----------CTCRVWGV-NGTQLEVYDEHSG---------------------------------KGIWKIAVPIGVI 271 (967)
T ss_pred c-----------eEEEEEec-ccceehhhhhhhh---------------------------------cceeEEEEcCCce
Confidence 5 89999984 5888889999984 6899999999999
Q ss_pred EEEEecCCCcEEEccC
Q 016446 374 EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 374 ~LaSgs~D~tIrlW~~ 389 (389)
+++|++.|+++|+|+.
T Consensus 272 ~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEeeccCcchhhhhh
Confidence 9999999999999973
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-09 Score=108.01 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=176.7
Q ss_pred EEEEEecC----ceEEEEec--ccceee--eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-
Q 016446 15 IVFALAHS----GVCAAFSR--ETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR- 85 (389)
Q Consensus 15 ~~a~~~~~----gtiklW~~--~tg~~l--~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~- 85 (389)
++.++++. +.|..+++ ++|++- ..+.. ...-.-++++|+++.|-++...+..+ ..+..+.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~ 72 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPD 72 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETT
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCC
Confidence 45667777 78999887 556543 33322 23445689999999998876432123 3444444432
Q ss_pred -CCCCCcceeEeee-cccCceeEEEecCCCeEEEEec-CCCeEEEEeCCC-CeEEE---Eec------------CCcEEE
Q 016446 86 -GKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLY---SIS------------DKHVQE 146 (389)
Q Consensus 86 -g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~-g~~l~---tl~------------~~~V~~ 146 (389)
|++. .+-... ....|..++++ |||++|..+. .+++|-++++.. |++.. .+. .....+
T Consensus 73 ~g~L~---~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 73 TGTLT---LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp TTEEE---EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred cceeE---EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 5541 121111 33446679998 8999988887 499999999975 66432 221 246889
Q ss_pred EEEc-CCceEEEEecCCCCeeEEEEEcCCCe--EE--EEEee-cCCceeEEEEEecCCCeEEEE-eCCCcEEEEECC--C
Q 016446 147 IKIS-PGIMLLIFNRSSSHVPLKILSIEDGT--VL--KVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 217 (389)
Q Consensus 147 vafS-~g~~la~~~~~s~d~tiklWd~~tG~--~l--~tl~~-~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~--t 217 (389)
+.|+ +|+++++..-+. ..|.++++..+. +. ..+.. ....=+.++|+ |++.++... ..+++|-++++. +
T Consensus 149 v~~~pdg~~v~v~dlG~--D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGA--DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEE-TTSSEEEEEETTT--TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEECCCCCEEEEEecCC--CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 9999 578887775443 478888886654 32 23331 22333789998 677777665 589999999998 5
Q ss_pred CeE--EEEccc------CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---CcE--EEEeccCcCCcCCCCeeEEEEC
Q 016446 218 AEL--MEVSRT------EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 218 g~~--~~~l~g------h~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~~--l~tl~gh~~~~~~~~v~sv~fS 282 (389)
|+. +++... .......++++|||++|-.+. .++|-+++++ |++ +..+.-.... -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 543 332221 123688999999999877764 8899999983 443 2333211111 2799999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeC--CCCeEEEEe
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKI 322 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~--~tg~~l~tl 322 (389)
|||++|+.++.+ +++|.++++ .+|++...-
T Consensus 301 ~~g~~l~Va~~~----------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 301 PDGRYLYVANQD----------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTSSEEEEEETT----------TTEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecC----------CCeEEEEEEeCCCCcEEEec
Confidence 999999999876 488999966 678765443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-13 Score=136.63 Aligned_cols=225 Identities=18% Similarity=0.193 Sum_probs=178.3
Q ss_pred EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEE
Q 016446 48 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 127 (389)
Q Consensus 48 ~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tikl 127 (389)
..+-|+.+|..|+. |+.. ..+-..|..++++ .|......-+.+|.|- -+.+++|- .+.+-+.|
T Consensus 133 Y~~~ytrnGrhlll----gGrK------GHlAa~Dw~t~~L-----~~Ei~v~Etv~Dv~~L-Hneq~~AV-AQK~y~yv 195 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLL----GGRK------GHLAAFDWVTKKL-----HFEINVMETVRDVTFL-HNEQFFAV-AQKKYVYV 195 (545)
T ss_pred eeeeecCCccEEEe----cCCc------cceeeeeccccee-----eeeeehhhhhhhhhhh-cchHHHHh-hhhceEEE
Confidence 67899999999888 6666 5666678888887 3333333345678997 68888885 57788889
Q ss_pred EeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC
Q 016446 128 FDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 128 Wdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
+| ..|..++-+. ...|..+.|=|-.+|++++ +.-+.++--|+.+|+++..+..-.+.+....-+ |-+..+-.|..
T Consensus 196 YD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~--~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Ghs 271 (545)
T KOG1272|consen 196 YD-NNGTELHCLKRHIRVARLEFLPYHFLLVAA--SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGHS 271 (545)
T ss_pred ec-CCCcEEeehhhcCchhhhcccchhheeeec--ccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcCC
Confidence 99 6899888887 4789999999988887764 344799999999999998887555666666655 55777777889
Q ss_pred CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 207 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 207 D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.|||-||...+.+++-.+--|..+|.+||+.|+|+++||.+ |..+||||+. -..+.++.- +++ ...++||--
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~---a~~ls~Sqk 345 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHP---ASNLSLSQK 345 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCC---ccccccccc
Confidence 99999999999999888889999999999999999999999 9999999997 344444432 222 578999988
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|-+.++.+ .-|.||-
T Consensus 346 glLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 346 GLLALSYG-------------DHVQIWK 360 (545)
T ss_pred cceeeecC-------------Ceeeeeh
Confidence 88777654 3688894
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=132.18 Aligned_cols=285 Identities=13% Similarity=0.190 Sum_probs=205.0
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCcee---EEEecCCC
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF---VEFDDVNG 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~---v~Fs~pdG 113 (389)
.-|++|+ ..|+.|-|+..|..|+| +++| +++-+||...++... -|...|...++. +-|+ +-
T Consensus 136 ~kL~~H~-GcVntV~FN~~Gd~l~S----gSDD------~~vv~WdW~~~~~~l---~f~SGH~~NvfQaKFiP~s--~d 199 (559)
T KOG1334|consen 136 KKLNKHK-GCVNTVHFNQRGDVLAS----GSDD------LQVVVWDWVSGSPKL---SFESGHCNNVFQAKFIPFS--GD 199 (559)
T ss_pred hcccCCC-CccceeeecccCceeec----cCcc------ceEEeehhhccCccc---ccccccccchhhhhccCCC--CC
Confidence 4578876 99999999999999999 7799 999999998887621 222233333333 4443 45
Q ss_pred eEEEEecCCCeEEEEeC-CCCeEEEEe----cCCcEEEEEEcCC--ceEEEEecCCCCeeEEEEEcCCCeEEEEEe---e
Q 016446 114 KVLTYSAQDSIYKVFDL-KNYTMLYSI----SDKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFY---H 183 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl-~~g~~l~tl----~~~~V~~vafS~g--~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~ 183 (389)
+.|++++.||.||+=.+ .+|.+..+- |.+.|.-+|.-|+ ..|.+ ++.|.-++-.|+.++..-.++. .
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S---~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS---CGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc---cccccceeeeeeccCCccceeeeecc
Confidence 78999999999999885 355554232 2467777776642 23334 4667888888888876555443 2
Q ss_pred cCC---ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE------EEEc------ccCCCceEEEEEc-CCCcEEEEEc
Q 016446 184 LLH---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL------MEVS------RTEFMTPSAFIFL-YENQLFLTFR 247 (389)
Q Consensus 184 ~~~---~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~------~~~l------~gh~~~v~sv~fs-pdg~~laS~s 247 (389)
+.. ....++..|.....++.++.|.-+|+||.+.-.. +..+ ....-.|..++|+ ..+.+|||-+
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 222 2356666544345778899999999999874211 1222 1223468999999 5566666666
Q ss_pred CCeEEEEeCC---C----------cEEEE-eccCcCCcCCCCeeEEE-ECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 248 NRTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNIY-ITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 248 D~tIklWd~~---G----------~~l~t-l~gh~~~~~~~~v~sv~-fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|-.|-|.+.+ | .+++. ++||.+.. .|..|- |-|...|++|||. + |-|-||+
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~---TVKgVNFfGPrsEyVvSGSD-C----------GhIFiW~ 422 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR---TVKGVNFFGPRSEYVVSGSD-C----------GHIFIWD 422 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhccccccc---ccceeeeccCccceEEecCc-c----------ceEEEEe
Confidence 9999999753 5 34444 88998753 366664 6899999999874 2 8999999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
=.+|+.|+-|.|-. ..|++|-=+|--..|||.+-|.-||||-
T Consensus 423 K~t~eii~~MegDr----------------------------------~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 423 KKTGEIIRFMEGDR----------------------------------HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred cchhHHHHHhhccc----------------------------------ceEeccCCCCCCchhhccCCccceeeec
Confidence 99999999999865 3899999999999999999999999994
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=128.96 Aligned_cols=199 Identities=11% Similarity=0.126 Sum_probs=152.0
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.++-++.||.+.+=+ +.|+.-... |...|.+-+++ +|.-|+++ ++|+.||+|. ++|-+.-++......++++
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~---GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTA---GEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeee---cCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 566678888887777 466644444 45689999999 68878775 6779999999 7888877777666889999
Q ss_pred EEEecCCCeEEEEeCC-CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcC
Q 016446 192 DFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 269 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D-~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~ 269 (389)
++. |+...++-...+ -.|| -++-...+-..+.|.+-|-++.|+|...+++||+ |-..|+||..|..|.+-..|..
T Consensus 152 ~W~-p~S~~vl~c~g~h~~IK--pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWA-PNSNSIVFCQGGHISIK--PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEY 228 (737)
T ss_pred EEC-CCCCceEEecCCeEEEe--ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhcc
Confidence 997 555565554433 3334 3333333444589999999999999999999999 9999999999999888888887
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
+ |.+|+|.|| +..+-+|. +|.|+ ..-. .
T Consensus 229 ~-----ITSva~npd-~~~~v~S~------------nt~R~------------~~p~-------------~--------- 256 (737)
T KOG1524|consen 229 A-----ITSVAFNPE-KDYLLWSY------------NTARF------------SSPR-------------V--------- 256 (737)
T ss_pred c-----eeeeeeccc-cceeeeee------------eeeee------------cCCC-------------c---------
Confidence 7 799999999 55555654 57772 2111 1
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
..|..+++||||..++.|...|.+
T Consensus 257 -----------GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 257 -----------GSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred -----------cceEEEEEcCCCceeeccccCceE
Confidence 379999999999999999988865
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=128.93 Aligned_cols=261 Identities=12% Similarity=0.065 Sum_probs=172.3
Q ss_pred ceEEEEecccc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc--eeEeeec
Q 016446 23 GVCAAFSRETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF--ALFESES 99 (389)
Q Consensus 23 gtiklW~~~tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~--~l~~~~~ 99 (389)
+.+-+|++..- ++=..+. -...|.++.|+|....|+.+ |.++ .++-+||++.+...... ..-.+.+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~p~ll~g---G~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh 290 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE--SPSEVTCLKFCPFDPNLLAG---GCYN------GQVVLWDLRKGSDTPPSGLSALEVSH 290 (555)
T ss_pred ceEEEEecCCCCCceEEEe--cCCceeEEEeccCCcceEEe---eccC------ceEEEEEccCCCCCCCcccccccccC
Confidence 57889998643 3333333 34789999999997766664 6688 99999999777642111 1111234
Q ss_pred ccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCe------EEEEec--------CCcEEEEEEcC--CceEEEEecCC
Q 016446 100 LKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYT------MLYSIS--------DKHVQEIKISP--GIMLLIFNRSS 162 (389)
Q Consensus 100 ~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~------~l~tl~--------~~~V~~vafS~--g~~la~~~~~s 162 (389)
...+..+.+-. +.+.-++|+|.||.|+.|++..-. ++-... ...+.+++|.+ -..++++...
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~- 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE- 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC-
Confidence 44444444431 222458899999999999865322 111111 13688899983 3344455333
Q ss_pred CCeeEEE---EEcCCCe-----EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEE
Q 016446 163 SHVPLKI---LSIEDGT-----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSA 233 (389)
Q Consensus 163 ~d~tikl---Wd~~tG~-----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~s 233 (389)
|.|.- ++...+. .+.++..|.+.+..|.++ |+...+..++.|-++|||.-. .-.++-.+.-+.+.|.+
T Consensus 370 --G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 370 --GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred --cEEEEEeccCCcccccccccccccccccCcceEeeecC-CCccceeeeeccceeEeccccCCCCcchhhhhccceeee
Confidence 44433 4443332 133555677889999999 455444444449999999987 56667777888889999
Q ss_pred EEEcCCCc-EEEEEc-CCeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 234 FIFLYENQ-LFLTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 234 v~fspdg~-~laS~s-D~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
++|||-.- .|+++. ||.|.|||+. - +.+.+..-+... .+-+.++|+|+.||.|.. -|+|
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~-----l~~~~~s~~g~~lavGd~-----------~G~~ 510 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA-----LTRVRWSPNGKLLAVGDA-----------NGTT 510 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccc-----cceeecCCCCcEEEEecC-----------CCcE
Confidence 99999774 566777 9999999984 2 334444433222 577889999999999864 4999
Q ss_pred EEEeCC
Q 016446 309 NVSSIL 314 (389)
Q Consensus 309 klWd~~ 314 (389)
.++++.
T Consensus 511 ~~~~l~ 516 (555)
T KOG1587|consen 511 HILKLS 516 (555)
T ss_pred EEEEcC
Confidence 999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-12 Score=122.25 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=138.1
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE--EEEcccCC-C
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAEL--MEVSRTEF-M 229 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~--~~~l~gh~-~ 229 (389)
.+|++-+. ++|||+|..||+.+..|++|...++.|.|+.- .+..+.+++.||+||+||+++... +....+|. .
T Consensus 42 ~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecC---CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 34454434 68999999999999999999999999999843 356788889999999999997543 34445565 4
Q ss_pred ceEEEEEcCCCcEEEEEc-----CCeEEEEeCC--CcEEEEec-cCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccc
Q 016446 230 TPSAFIFLYENQLFLTFR-----NRTVAVWNFR--GELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQW 300 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-----D~tIklWd~~--G~~l~tl~-gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~ 300 (389)
+-.+++..-.+++++.|. |-.|-+||++ -++++.|. .|.+- |..|.|.| |-.+|+|||-|
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD-----VT~lrFHP~~pnlLlSGSvD------ 187 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD-----VTQLRFHPSDPNLLLSGSVD------ 187 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc-----ceeEEecCCCCCeEEeeccc------
Confidence 556666676889999883 6789999996 44455544 56654 89999999 67899998764
Q ss_pred cCCCCCeEEEEeCCCCe----EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEE
Q 016446 301 MEGSAGSINVSSILTGK----CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEI 375 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~L 375 (389)
|.|.|+|++.-. ++++++ |. ..|..+.|..++ +.|
T Consensus 188 -----GLvnlfD~~~d~EeDaL~~viN-~~----------------------------------sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 188 -----GLVNLFDTKKDNEEDALLHVIN-HG----------------------------------SSIHLIGWLSKKYKRI 227 (376)
T ss_pred -----ceEEeeecCCCcchhhHHHhhc-cc----------------------------------ceeeeeeeecCCcceE
Confidence 999999986432 222222 11 469999999999 559
Q ss_pred EEecCCCcEEEcc
Q 016446 376 YTGNRHGLVHVWS 388 (389)
Q Consensus 376 aSgs~D~tIrlW~ 388 (389)
.+=+.+++..+|+
T Consensus 228 ~clTH~Etf~~~e 240 (376)
T KOG1188|consen 228 MCLTHMETFAIYE 240 (376)
T ss_pred EEEEccCceeEEE
Confidence 9999999999997
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-09 Score=106.12 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=168.1
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee---ec
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ES 99 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~---~~ 99 (389)
++|.+.|.++++.+.++.... ..- -+ +||||+.|..+..+-+.--..-.-..+.++|+++++......+=.. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999999998764 332 34 9999999988765211111111116888999999887322221000 01
Q ss_pred ccCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 100 LKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
...+..++|| |||++|.-.. .+..|-+.|+++++.+.++. .+...-+..++....+.+ .++. ..++=.=.+|+
T Consensus 104 ~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~-~Dg~--~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC-RDGS--LAKVGYGTKGN 179 (352)
T ss_pred cCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe-ecCc--eEEEEecCCCc
Confidence 2334478998 9999877444 48999999999999988876 232333333322222111 1211 11111112333
Q ss_pred EE-EEEe-ecC--Cc--eeEEEEEecCCCeEEEEeCCCcEEEEECC-----CCeEEEEccc-------CCCceEEEEEcC
Q 016446 177 VL-KVFY-HLL--HR--NKKVDFIEQFNEKLLVKQENENLQILDVR-----NAELMEVSRT-------EFMTPSAFIFLY 238 (389)
Q Consensus 177 ~l-~tl~-~~~--~~--~~~v~f~~~~~~~l~~~s~D~tIklWd~~-----tg~~~~~l~g-------h~~~v~sv~fsp 238 (389)
.. ++.+ .|. .. .+. .|.+.++..+-.+.+ |+|.+-|+. ..+...++.. ......-++++|
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 21 1111 111 00 011 444335544444555 999999953 3444444321 223344499999
Q ss_pred CCcEEEEEc---C--------CeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCC
Q 016446 239 ENQLFLTFR---N--------RTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 239 dg~~laS~s---D--------~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~ 304 (389)
||+++-... . +.|-+.|.. ++.+..+. |+. ++.|+|||||+ +|...+..
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~~---------- 320 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALSTG---------- 320 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCCC----------
Confidence 988776632 2 689999996 89888776 442 58999999999 77776542
Q ss_pred CCeEEEEeCCCCeEEEEec
Q 016446 305 AGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~ 323 (389)
+++|-+.|+.+++.++++.
T Consensus 321 s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 321 DKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCcEEEEECcCCeEEeeec
Confidence 5899999999999999983
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=130.19 Aligned_cols=125 Identities=13% Similarity=0.177 Sum_probs=96.6
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCC--------------CeEEEEc--------------ccCCCceEEEEEc
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------------AELMEVS--------------RTEFMTPSAFIFL 237 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--------------g~~~~~l--------------~gh~~~v~sv~fs 237 (389)
..+..+.+.+-++..++++-.++.+.++|..- +....++ .--...|..++||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 45678888866677888888999999996532 1111111 1123478899999
Q ss_pred CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
|||++||+.+ ||.+||.|+. -+++..++---+ ...+|++||||||||+|++| .-|-+|.+..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGED-----------DLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGED-----------DLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCc-----------ceEEEEEecc
Confidence 9999999999 9999999998 566555542222 26899999999999998765 7999999999
Q ss_pred CeEEEEecCCC
Q 016446 316 GKCLAKINATN 326 (389)
Q Consensus 316 g~~l~tl~gH~ 326 (389)
++.++-=+||.
T Consensus 364 rRVVARGqGHk 374 (636)
T KOG2394|consen 364 RRVVARGQGHK 374 (636)
T ss_pred ceEEEeccccc
Confidence 99999999998
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=129.07 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=163.0
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecCCcEEEEEEc-C--------CceEEEEecCCCCeeEEEEEcCC
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKIS-P--------GIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~~~V~~vafS-~--------g~~la~~~~~s~d~tiklWd~~t 174 (389)
+|.++ .+..++-+++++..++-||+.+-+ .+..++...|...-|= + ...++.+ +.|+.+.|-+ ..
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~il~-k~ 93 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVILN-KS 93 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEEec-cc
Confidence 57776 566666666666666666664433 3444443333222221 1 2355555 4457888888 68
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 254 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklW 254 (389)
|+..+....|-+.+.+-.++ |+|--|++.++||.||+|.- +|-+..++.....+|++++|-|+..-++-+.-+.+-|=
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred chhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe
Confidence 89999999888888888888 88999999999999999986 89988888888889999999999998887763433343
Q ss_pred eC--CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 255 NF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 255 d~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
-+ +-+.+ ..+.|.+- |.++.++|...+|+||++| -.-|+|| ..|+.+.+=..|+
T Consensus 172 pL~~n~k~i-~WkAHDGi-----iL~~~W~~~s~lI~sgGED-----------~kfKvWD-~~G~~Lf~S~~~e------ 227 (737)
T KOG1524|consen 172 PLAANSKII-RWRAHDGL-----VLSLSWSTQSNIIASGGED-----------FRFKIWD-AQGANLFTSAAEE------ 227 (737)
T ss_pred eccccccee-EEeccCcE-----EEEeecCccccceeecCCc-----------eeEEeec-ccCcccccCChhc------
Confidence 44 34444 47788875 8999999999999998765 7999999 5599998888887
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
.+|++|+|.|| +..+-|| -++.|
T Consensus 228 ----------------------------y~ITSva~npd-~~~~v~S-~nt~R 250 (737)
T KOG1524|consen 228 ----------------------------YAITSVAFNPE-KDYLLWS-YNTAR 250 (737)
T ss_pred ----------------------------cceeeeeeccc-cceeeee-eeeee
Confidence 59999999999 6666665 34444
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-09 Score=102.52 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=158.1
Q ss_pred cccCceeEEEecCCCeEEEEecC----CCeEEEEeCCC--CeE--EEEec--CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~----D~tiklWdl~~--g~~--l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
....|..++++ |++++|-+... ++.|-.|.+.. |++ +.+.. +..-..|+++ ++.+|+++.-. +++|
T Consensus 35 ~~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--~g~v 111 (345)
T PF10282_consen 35 EGENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--GGSV 111 (345)
T ss_dssp ESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--TTEE
T ss_pred CCCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--CCeE
Confidence 34456679998 88888877765 57998888764 564 33333 4566789999 68888887544 4789
Q ss_pred EEEEcCC-CeEEEEE--ee-----------cCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCe--EEE--Ec-ccC
Q 016446 168 KILSIED-GTVLKVF--YH-----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME--VS-RTE 227 (389)
Q Consensus 168 klWd~~t-G~~l~tl--~~-----------~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~--~~~--~l-~gh 227 (389)
-++++.. |.+.... .. -..+...+.|. |++..+++.. ....|.++++.... +.. .+ ...
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 9999986 6655432 11 12455789998 7888888764 45589999997654 322 22 234
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCeEEEEeCC---CcE--EEEeccCc-CCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 228 FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s--D~tIklWd~~---G~~--l~tl~gh~-~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
...++-++|+|||+++-... +++|-++++. |++ +++..-.. .+.....-..|++||||++|..+.+.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----- 265 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----- 265 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----
Confidence 45688999999999886664 9999999985 432 33322110 11000124789999999999887764
Q ss_pred ccCCCCCeEEEEeC--CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 300 WMEGSAGSINVSSI--LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 300 ~~~s~D~tIklWd~--~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
.++|-++++ .+|++ ..+..-. +.+ ..-+.++|+|||++|+.
T Consensus 266 -----~~sI~vf~~d~~~g~l-~~~~~~~----------------------------~~G---~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 266 -----SNSISVFDLDPATGTL-TLVQTVP----------------------------TGG---KFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp -----TTEEEEEEECTTTTTE-EEEEEEE----------------------------ESS---SSEEEEEE-TTSSEEEE
T ss_pred -----CCEEEEEEEecCCCce-EEEEEEe----------------------------CCC---CCccEEEEeCCCCEEEE
Confidence 489999998 34543 2222111 000 35688999999999998
Q ss_pred ec-CCCcEEEcc
Q 016446 378 GN-RHGLVHVWS 388 (389)
Q Consensus 378 gs-~D~tIrlW~ 388 (389)
+. .+++|.+++
T Consensus 309 a~~~s~~v~vf~ 320 (345)
T PF10282_consen 309 ANQDSNTVSVFD 320 (345)
T ss_dssp EETTTTEEEEEE
T ss_pred EecCCCeEEEEE
Confidence 87 556888774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-11 Score=130.11 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=154.9
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEeccc-------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcc
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 72 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~t-------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~ 72 (389)
++.|..+..+ +.+++++|.|||||+|+... -++-+|.... ...+..|.+-+.|+++|.+ +.|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~~vt~~~~~~~~Av~----t~D--- 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-GSRVEKVTMCGNGDQFAVS----TKD--- 1119 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-CCceEEEEeccCCCeEEEE----cCC---
Confidence 4566677777 57999999999999999642 2455555543 3789999999999999985 455
Q ss_pred eeeeeeeEeEecc--CCC-CCcce-eEeeecccC-ceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec----CC
Q 016446 73 LKCRSTKIEYIRR--GKP-DSGFA-LFESESLKW-PGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS----DK 142 (389)
Q Consensus 73 l~~~~~~l~~i~~--g~~-~~~~~-l~~~~~~~~-~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~----~~ 142 (389)
..+.+-.+.. ++. .-.+. .-.....+. +.--+|...++. .|+.+..-+-|-.||...-.-+.+++ .+
T Consensus 1120 ---G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1120 ---GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred ---CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 4444444422 111 00000 000011111 111244433444 78888888899999976655444443 57
Q ss_pred cEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCC--CeEEEE-e-CCCcEEEEECC
Q 016446 143 HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFN--EKLLVK-Q-ENENLQILDVR 216 (389)
Q Consensus 143 ~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~--~~l~~~-s-~D~tIklWd~~ 216 (389)
.|.+++.+| +.+++++.+. +.+-+||++=+.++..-. .+..++..|...+..+ ...+++ + ..+.|-+||++
T Consensus 1197 ~vTSi~idp~~~WlviGts~---G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSR---GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ceeEEEecCCceEEEEecCC---ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 899999996 7788887544 689999999888777655 1224455555543223 555554 4 78999999999
Q ss_pred CCeEEEEcccC-------------------CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 016446 217 NAELMEVSRTE-------------------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 217 tg~~~~~l~gh-------------------~~~v~sv~fspdg~~laS~s-D~tIklWd~~G 258 (389)
+|.|..++..- .-......+..-+..+.+|+ |..||.||...
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 99998887433 11122233333344555665 99999999863
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-10 Score=126.35 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=161.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCc-------------ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~-------------~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
+.+.++-+.++.|++++.. |+.+.++.+... +.-..|++.|+|+.|..+ +. .. +.|+
T Consensus 580 g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa--Dt-~n------~~Ir 649 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA--DT-EN------HALR 649 (1057)
T ss_pred CeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE--eC-CC------ceEE
Confidence 6678888899999999985 887776654211 124789999998876553 22 33 4556
Q ss_pred EeEeccCCCCC----ccee--Ee------eecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEE-EEecC----
Q 016446 80 IEYIRRGKPDS----GFAL--FE------SESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTML-YSISD---- 141 (389)
Q Consensus 80 l~~i~~g~~~~----~~~l--~~------~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l-~tl~~---- 141 (389)
..|...+.... +... +. ...+.+|..|+|+ | +|.+.++.+.++.|++||..++... +...+
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 55654443200 0000 00 0125578899998 6 7888899999999999999887643 11110
Q ss_pred -----------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee---------------------cCCce
Q 016446 142 -----------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---------------------LLHRN 188 (389)
Q Consensus 142 -----------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~---------------------~~~~~ 188 (389)
.....|+|+ +|++|.++. ..++.|++||+.+|.......+ ...+-
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 234679999 577677764 4458999999988764211100 01122
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-------------ccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-------------~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
..|+|. +++..+++-+.+++|++||..++.+.... .++...+..++++|+|+++++.+ +++|++|
T Consensus 807 ~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 577886 56666666789999999999998876442 12334788999999999999988 9999999
Q ss_pred eCC-CcE--EEEec
Q 016446 255 NFR-GEL--VTSFE 265 (389)
Q Consensus 255 d~~-G~~--l~tl~ 265 (389)
|++ ++. +.+++
T Consensus 886 d~~~~~~~~~~~l~ 899 (1057)
T PLN02919 886 DLNKGEAAEILTLE 899 (1057)
T ss_pred ECCCCccceeEeec
Confidence 997 654 34454
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-10 Score=115.61 Aligned_cols=322 Identities=16% Similarity=0.211 Sum_probs=215.0
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC---CCcceeee---e
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD---NFSSLKCR---S 77 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~---d~~~l~~~---~ 77 (389)
|..+.+| |.+|| ..+-.-|++|.-..+-.|.++. | .-|+-+-|||+|++|.+=+.- +. +....+.+ +
T Consensus 35 ~~~~~~SP~G~~l~-~~~~~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~-pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 35 VAYVSESPLGTYLF-SEHAAGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSRE-PIIEPEIEISPFTSKNN 109 (561)
T ss_pred hhheeecCcchhee-hhhccceEEccccchhheeeee--c-CCceecccCcccceeeeeccC-CccChhhccCCccccCc
Confidence 4556777 55544 5566778899866544444433 3 578999999999999985542 22 22333333 4
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE----EEEecCCcEEEEEEcCC-
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKHVQEIKISPG- 152 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~----l~tl~~~~V~~vafS~g- 152 (389)
..+||+..|.+.++...-.+..++|+ -+.|+ -|.+++|-- --..+++.++ ++.. ...+.-..|....|||+
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 88999999988333222112233432 47888 677787755 3457889997 5552 23444578999999975
Q ss_pred --ceEEEEe--cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE------e-----CCCcEEEEECCC
Q 016446 153 --IMLLIFN--RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVRN 217 (389)
Q Consensus 153 --~~la~~~--~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~------s-----~D~tIklWd~~t 217 (389)
..||.-. ..+.+.++++|.+.-+..|.+-+...-.--.+.+. +.+.+|+.- + ...++.|.+++.
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3344332 23556799999999888876544211222334444 346655531 1 347888999974
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc---CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s---D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
..+ ....+-.+.|..++|+|.++.++..+ +.++-+.|+.|.+...+.. .. =+.+.|||.+++++.++.|
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe--~~-----rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE--QK-----RNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--cc-----cccccccCcccEEEEecCC
Confidence 444 33336678999999999999887653 8999999999997655432 22 2789999999999999987
Q ss_pred CCcccccCCCCCeEEEEeCCCCe-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 295 EPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
+ --|.|-+||..... |+.++.|-. ..-+.|||||+
T Consensus 337 n--------l~gni~i~~~~~rf~~~~~~~~~n------------------------------------~s~~~wspd~q 372 (561)
T COG5354 337 N--------LQGNIEIFDPAGRFKVAGAFNGLN------------------------------------TSYCDWSPDGQ 372 (561)
T ss_pred c--------cccceEEeccCCceEEEEEeecCC------------------------------------ceEeeccCCce
Confidence 4 34789999976433 344676643 33478999999
Q ss_pred EEEEec------CCCcEEEccC
Q 016446 374 EIYTGN------RHGLVHVWSN 389 (389)
Q Consensus 374 ~LaSgs------~D~tIrlW~~ 389 (389)
.+.+.- .|..|+||+.
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EEEecCCCcccccCcceEEEEe
Confidence 988775 5889999984
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-10 Score=109.10 Aligned_cols=174 Identities=10% Similarity=0.186 Sum_probs=132.1
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
..|.|||=...+|+.++. ..+|.+|.++++..++.. . +.|++|... +-+.++.+..-..+.--.+..+..+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl--~---~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL--E---NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe--c---CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 478899966777999988 689999999988777665 2 689999987 556666665332232222222222333
Q ss_pred EEE-Ee-CCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CC-eEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 201 LLV-KQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 201 l~~-~s-~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~-tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
+++ -+ .=|.|+|=|+..-+. ..+.+.|...|..++.+-+|.++||+| .| -|||||.+ |++++.|.--....
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A-- 227 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA-- 227 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh--
Confidence 333 33 669999999987665 477889999999999999999999999 77 58999996 99999987433332
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.|.+++||||+++||.+|. .||+.|+.++.
T Consensus 228 -~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 228 -DIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred -eEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 3899999999999998764 49999998864
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-11 Score=113.94 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=129.1
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEEEcC--CCc
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLY--ENQ 241 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fsp--dg~ 241 (389)
..+-|||=...+|+.+|.. ...|.+|.+. .++|++ --.++|.+|... .-+.++.++....+=--++..| +..
T Consensus 75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~---r~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-NSEIKAVKLR---RDRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEe-ccceeeEEEc---CCeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 4688999778889999884 4888999886 344443 467899999987 3444554444332222334443 555
Q ss_pred EEEEEc--CCeEEEEeCCCcEE---EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe-EEEEeCCC
Q 016446 242 LFLTFR--NRTVAVWNFRGELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILT 315 (389)
Q Consensus 242 ~laS~s--D~tIklWd~~G~~l---~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t-IklWd~~t 315 (389)
+||-=+ -|.|+|=|+..... .....|... |..|+.+-+|..+||+|.. || |||||.++
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaStk-----------GTLIRIFdt~~ 213 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATASTK-----------GTLIRIFDTED 213 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEeccC-----------cEEEEEEEcCC
Confidence 666545 78999999863333 677889887 7999999999999999764 66 89999999
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+.++.|+--.+. ..|++++||||+++||.+|+.||+++..
T Consensus 214 g~~l~E~RRG~d~--------------------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 214 GTLLQELRRGVDR--------------------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CcEeeeeecCCch--------------------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 9999998653321 4899999999999999999999999864
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=124.19 Aligned_cols=205 Identities=10% Similarity=0.133 Sum_probs=148.5
Q ss_pred cCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe-EEEEEeecCCce
Q 016446 110 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRN 188 (389)
Q Consensus 110 ~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~~~~~ 188 (389)
||-+.++|....||-+|+||..++++...+. |...+ +.-++--.|.+.-+. |.+.+.- .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----------p~~~~------s~t~~~~~w~L~~~~s~~k~~~~----~ 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA----------PIASL------SGTCTYTKWGLSADYSPMKWLSL----E 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec----------cchhc------cCcceeEEEEEEeccchHHHHhH----H
Confidence 4668899999999999999998888765553 22222 111344444422111 1111100 0
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
+....+ .+-..++-|-..|.|.++++..|+....+. .|...|.++..+.+-.-|=|++ |..+-.|+.. +..++.+
T Consensus 62 ~~~~~s-~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 62 KAKKAS-LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred HHhhcc-CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 000001 112233346689999999999999987775 6999999999999888899998 9999999997 8888888
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
.+-... +.+++++|||++|++|| ++||+||+++++.+.++.||.
T Consensus 141 ~~~~~~-----~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv~~ftgh~------------------ 184 (541)
T KOG4547|consen 141 KEQKPL-----VSSLCISPDGKILLTAS-------------RQIKVLDIETKEVVITFTGHG------------------ 184 (541)
T ss_pred ccCCCc-----cceEEEcCCCCEEEecc-------------ceEEEEEccCceEEEEecCCC------------------
Confidence 876654 78999999999999987 699999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCC-----CCEEEEe-cCCCcEEEc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEE-----RNEIYTG-NRHGLVHVW 387 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpd-----g~~LaSg-s~D~tIrlW 387 (389)
.+|.+++|--+ |+++.|+ ..+.-|-+|
T Consensus 185 ----------------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 185 ----------------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ----------------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 59999999888 6655544 344445555
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-11 Score=113.48 Aligned_cols=257 Identities=12% Similarity=0.111 Sum_probs=174.1
Q ss_pred ccEEEEEec----CceEEEE--ecccceeeeeeecCCcceEEEEEEeeCC-----CEEEEEEEeecCCCcceeeeeeeEe
Q 016446 13 RDIVFALAH----SGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~----~gtiklW--~~~tg~~l~tl~~~~~~~v~sv~~spdg-----~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
...||.++. +..|.|- +-++|+.+..-++.|.-++..+-|.|+- +.||++ . ...|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-----~-------D~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-----S-------DFLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-----c-------CeEEEE
Confidence 567777764 3445553 3446887777777776789999999997 367773 2 256777
Q ss_pred Eec--cCCCCCcceeEe---eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-----EEEEecCCcEEEEEEc-
Q 016446 82 YIR--RGKPDSGFALFE---SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKIS- 150 (389)
Q Consensus 82 ~i~--~g~~~~~~~l~~---~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-----~l~tl~~~~V~~vafS- 150 (389)
.+- .+++.....|-+ .++-....+..+..-|=++|.++|-|-|..+||+++|. -....|..+|.+|+|+
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 764 333310000111 12222233455555566899999999999999999973 2334467899999999
Q ss_pred CC-ceEEEEecCCCCeeEEEEEcCCCeE---EEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCC-CeEEEEc
Q 016446 151 PG-IMLLIFNRSSSHVPLKILSIEDGTV---LKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVS 224 (389)
Q Consensus 151 ~g-~~la~~~~~s~d~tiklWd~~tG~~---l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~t-g~~~~~l 224 (389)
.+ +.+|+ .+.|+.+|++|++.-+. ++.-.....+...++++.+|..++|+ +-....|.|-|++. ...+..|
T Consensus 207 ~s~~~FAS---vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 207 GSRDVFAS---VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred CccceEEE---ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 43 45544 46789999999875322 11111112345778888777778887 45678999999986 5678899
Q ss_pred ccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC--Cc-------EEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEe
Q 016446 225 RTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYC 292 (389)
Q Consensus 225 ~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~--G~-------~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s 292 (389)
++|...|+.|+|-|.. ..|+|++ |-.+-|||++ .. +..+ .++ .|+.+.++| .+..|+.++
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~-------EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGG-------EVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccc-------eeeeeeecccCCCEEEEEe
Confidence 9999999999999865 4677888 8999999985 32 1122 122 389999996 578888765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=118.85 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=187.7
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
...-+.|-.+|||++|..+ |.+. -+|+++|+..=-+ -|. +.-..-+.+.-.| .|=..++---.|
T Consensus 51 p~ast~ik~s~DGqY~lAt---G~YK------P~ikvydlanLSL-----KFERhlDae~V~feiLs-DD~SK~v~L~~D 115 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLAT---GTYK------PQIKVYDLANLSL-----KFERHLDAEVVDFEILS-DDYSKSVFLQND 115 (703)
T ss_pred ccccceeEecCCCcEEEEe---cccC------CceEEEEccccee-----eeeecccccceeEEEec-cchhhheEeecC
Confidence 3567899999999998775 5677 6778888754322 121 0000011122222 333334444567
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~ 200 (389)
++|.+=. +-|.- +++. ...-++++++ |.--|..++++ ..|.-.|++.|+-|..|....+.++.|..+ +-.+.
T Consensus 116 R~IefHa-k~G~h-y~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~hgL 189 (703)
T KOG2321|consen 116 RTIEFHA-KYGRH-YRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEHGL 189 (703)
T ss_pred ceeeehh-hcCee-eeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Cccce
Confidence 7775543 22321 2221 2334567777 64333333333 368889999999999999777889999987 55788
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEccc------CCC-----ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRT------EFM-----TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 267 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~g------h~~-----~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh 267 (389)
|++|..|+.|..||.++.+.+.+|.- |.. .|+++.|+.||=.++.|. +|.|-|+|+. -+.+. ...|
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh 268 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDH 268 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-eccc
Confidence 88899999999999999887666532 333 499999999999999997 9999999997 44332 3567
Q ss_pred cCCcCCCCeeEEEECCC--CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 268 LLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpd--G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
....| +..+.|-+. +..++| .|+ ..+||||-.+|+....+..-.
T Consensus 269 ~~e~p---i~~l~~~~~~~q~~v~S--~Dk----------~~~kiWd~~~Gk~~asiEpt~------------------- 314 (703)
T KOG2321|consen 269 GYELP---IKKLDWQDTDQQNKVVS--MDK----------RILKIWDECTGKPMASIEPTS------------------- 314 (703)
T ss_pred CCccc---eeeecccccCCCceEEe--cch----------HHhhhcccccCCceeeccccC-------------------
Confidence 66544 688888776 556665 442 799999999999988887543
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
.+..+.|=|++-++.+|-++..+.-
T Consensus 315 ----------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ----------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----------------CcCceeeecCCceEEEecCCCccee
Confidence 6778899999999999988877653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-11 Score=114.64 Aligned_cols=225 Identities=13% Similarity=0.157 Sum_probs=159.7
Q ss_pred CeEEEEecC----CCeEEEEeC--CCCeEEEE--ec-CCcEEEEEEcCCc------eEEEEecCCCCeeEEEEEcCC--C
Q 016446 113 GKVLTYSAQ----DSIYKVFDL--KNYTMLYS--IS-DKHVQEIKISPGI------MLLIFNRSSSHVPLKILSIED--G 175 (389)
Q Consensus 113 G~~Las~s~----D~tiklWdl--~~g~~l~t--l~-~~~V~~vafS~g~------~la~~~~~s~d~tiklWd~~t--G 175 (389)
.-+||-||. ...|.|=.+ .+++.+.. +. ...+..+-|.|.+ .||++ + ..+|||.+.. +
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~----D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-S----DFLRLWRIGDEES 133 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-c----CeEEEEeccCcCC
Confidence 446777763 344555443 34554322 22 3578889998644 56654 2 3799999863 2
Q ss_pred eEE--EEE-----eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCCc-EEE
Q 016446 176 TVL--KVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ-LFL 244 (389)
Q Consensus 176 ~~l--~tl-----~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg~-~la 244 (389)
+.. ..| ..+..+..+..+++.++.+|.++|-|-|.-|||+++|.. ...|-.|.+.|..|+|+.+|. .||
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA 213 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA 213 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence 211 112 134456678888888889999999999999999999743 556889999999999998764 678
Q ss_pred EEc-CCeEEEEeCC-CcE-EEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEE
Q 016446 245 TFR-NRTVAVWNFR-GEL-VTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCL 319 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~-l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l 319 (389)
|.+ ||.||+.|++ -+- --..|+-+...+ ...+++++ |-+|+|+-.+|. ..|-|-|++- +..+
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~p---LlRLswnkqDpnymATf~~dS----------~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTP---LLRLSWNKQDPNYMATFAMDS----------NKVVILDIRVPCTPV 280 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCc---ceeeccCcCCchHHhhhhcCC----------ceEEEEEecCCCcce
Confidence 888 9999999986 321 112333332211 45677766 567888876652 6788999975 6678
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+ ..|+.+++.|.. ..|.|++.|..+-+||.
T Consensus 281 a~L~~H~----------------------------------a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 281 ARLRNHQ----------------------------------ASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ehhhcCc----------------------------------ccccceEecCCCCceeeecCCcceEEEEec
Confidence 9999999 589999999976 68999999999999984
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-08 Score=102.06 Aligned_cols=263 Identities=12% Similarity=0.113 Sum_probs=156.4
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC----------CCeEEEEeCCCCeEEEEec-C---
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSIS-D--- 141 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~----------D~tiklWdl~~g~~l~tl~-~--- 141 (389)
.++.+-|..++++... +.... .|..+ +| |||+.|..+.. +..|.+||+++++.+..+. .
T Consensus 27 ~~v~ViD~~~~~v~g~---i~~G~--~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM---TDGGF--LPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEE---EEccC--CCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4555566566554211 11111 23344 87 89987765554 8899999999999998886 1
Q ss_pred -----CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 142 -----KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 142 -----~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
..-..+++| +|.+|.++. -+.+..|-+.|+++++.+.++.- .....+.-. ..+...+-+.|+...--.+
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t--~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPT--ANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEe--cCCccEEEeecCceEEEEe
Confidence 234589999 677887664 23368999999999999998873 111111111 1112222233433333222
Q ss_pred C-CCeEE----EEcccCCCceEEE-EEcC-CCcEEEEEcCCeEEEEeCCCc------EEEEeccC---cCCcCCCCeeEE
Q 016446 216 R-NAELM----EVSRTEFMTPSAF-IFLY-ENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDCNTNNI 279 (389)
Q Consensus 216 ~-tg~~~----~~l~gh~~~v~sv-~fsp-dg~~laS~sD~tIklWd~~G~------~l~tl~gh---~~~~~~~~v~sv 279 (389)
. +|+.. ..+.+-...+..= .|+| ||+++-.+..|+|.+=|+.+. .+.++... ..|.+.. ..-+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g-~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG-WQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCc-ceeE
Confidence 2 12211 1111111000000 4555 888776665699999996432 23333221 1344432 3559
Q ss_pred EECCCCCEEEEEecC-CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccc
Q 016446 280 YITSDQDLIISYCKA-EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 358 (389)
Q Consensus 280 ~fSpdG~~laS~s~D-~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (389)
+++|||++|...... ..+++-. ..+.|-++|..+++.+..+.--
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~--~~~~V~ViD~~t~kvi~~i~vG--------------------------------- 298 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKT--ASRFLFVVDAKTGKRLRKIELG--------------------------------- 298 (352)
T ss_pred EEcCCCCEEEEEecCCccccccC--CCCEEEEEECCCCeEEEEEeCC---------------------------------
Confidence 999999999874311 0000001 1258999999999999998632
Q ss_pred ccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 359 ALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 359 ~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
..+++++|||||+ .|+..+ .+++|.+-|
T Consensus 299 --~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 299 --HEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred --CceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 3799999999999 999888 578887765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-10 Score=111.29 Aligned_cols=273 Identities=10% Similarity=0.083 Sum_probs=192.3
Q ss_pred EEEEEee--ccEEEEEecCceEEEEeccc------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRET------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~t------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
|-.|.|+ ++.||++..|..++||+++. -+++.....+|-.-|.|++|+..+..|.| |..+ .+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S----G~~~------~~ 128 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS----GERW------GT 128 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec----CCCc------ce
Confidence 5678899 89999999999999999863 35665444455478999999999998888 6777 67
Q ss_pred eeEeEeccCCCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe----EEEEec-CCcEEEEEEcC
Q 016446 78 TKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKHVQEIKISP 151 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~----~l~tl~-~~~V~~vafS~ 151 (389)
+-+-||.+.+. .-+|.++ ..+.++.+.-+ |-..+||+.+.|+-|-+||....+ +..-.. +....++-|.|
T Consensus 129 VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQS---IYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeeccccee---eeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 77777776654 3355533 45566777887 667799999999999999986544 222222 45788999996
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCeE-E------EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGTV-L------KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~~-l------~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
-..||+.++. +-+-|||+.--+. + +.|+........+.|+ |.|.++++--....=-++|+-+.+|.-
T Consensus 205 ~~P~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 205 ETPALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred CCceeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeeccccee
Confidence 4566665444 4578999864221 1 1122111123678887 556666665555566678888777744
Q ss_pred EcccCCC-------ceEEEEEcCCCcEEEEEc-CCeEEEEeCC------C-----c-------------EEEEeccCcCC
Q 016446 223 VSRTEFM-------TPSAFIFLYENQLFLTFR-NRTVAVWNFR------G-----E-------------LVTSFEDHLLW 270 (389)
Q Consensus 223 ~l~gh~~-------~v~sv~fspdg~~laS~s-D~tIklWd~~------G-----~-------------~l~tl~gh~~~ 270 (389)
.--.|+. .+.+++|-.|-. ++||+ |=.|.+|.+- | . .+..|+||-.-
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 3333432 577888887766 89999 6799999741 2 1 34678999875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
++.|.|+|-..+|+|.+- .+.||||.-
T Consensus 360 -----~NQVRF~~H~~~l~SSGV-----------E~~~KlWS~ 386 (609)
T KOG4227|consen 360 -----PNQVRFSQHNNLLVSSGV-----------ENSFKLWSD 386 (609)
T ss_pred -----ccceeecCCcceEeccch-----------hhheecccc
Confidence 789999999999998654 379999973
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=111.79 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=130.3
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCC-C--
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIED-G-- 175 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~t-G-- 175 (389)
..||+. +.=-.+|.+..|-+||++|-+ .++...|+ +..|.++||-| +.-||++... -|-||.... +
T Consensus 102 r~~aWh-qH~~~fava~nddvVriy~ks-st~pt~Lks~sQrnvtclawRPlsaselavgCr~----gIciW~~s~tln~ 175 (445)
T KOG2139|consen 102 RGVAWH-QHIIAFAVATNDDVVRIYDKS-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA----GICIWSDSRTLNA 175 (445)
T ss_pred eeEeec-hhhhhhhhhccCcEEEEeccC-CCCCceecchhhcceeEEEeccCCcceeeeeecc----eeEEEEcCccccc
Confidence 458886 655567888999999999964 46655554 57899999997 6788887655 488997542 1
Q ss_pred ---------eEEEEEe--ecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 176 ---------TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 176 ---------~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
-+++.|+ +| -.|.++++. +|+..+++++ .|..|.|||+.+|.++-...-.-..+.-+.|||||.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 1222333 33 456888887 6788888877 88999999999999876654445567889999999999
Q ss_pred EEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 244 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 244 aS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
..+. |++.+||+-+ ..+.+=..+.. . |.+..+||+|.+|.-.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsg-r-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSG-R-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEecccceeeeehhcccceecceeccCC-c-----eeeeeecCCCCEEEEEEc
Confidence 9998 9999999653 33333222322 3 789999999999987764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=111.01 Aligned_cols=247 Identities=13% Similarity=0.164 Sum_probs=161.0
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCC---Ce--EEEEec--------------CCcEEEEEEc-CCc---eEEEEe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YT--MLYSIS--------------DKHVQEIKIS-PGI---MLLIFN 159 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~---g~--~l~tl~--------------~~~V~~vafS-~g~---~la~~~ 159 (389)
+..|+|+ -.|.+||+|.-+|-|-++.-+. ++ ...+++ .+.|..++.- +++ .|++
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-- 104 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-- 104 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe--
Confidence 4569998 7999999999999999997432 22 112221 1468888888 432 4433
Q ss_pred cCCCCeeEEEEEcCCCeE-----------------------------------EEEEe-ecCCceeEEEEEecCCCeEEE
Q 016446 160 RSSSHVPLKILSIEDGTV-----------------------------------LKVFY-HLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~-----------------------------------l~tl~-~~~~~~~~v~f~~~~~~~l~~ 203 (389)
..|+|||||-+..... .+.+. .|.=+++++.++ .|.+.+ .
T Consensus 105 --tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~-l 180 (433)
T KOG1354|consen 105 --TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETF-L 180 (433)
T ss_pred --cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceE-e
Confidence 4579999998864221 11222 466678888887 444444 4
Q ss_pred EeCCCcEEEEECC-CCeEEEE--cccCC-----CceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-Cc-EE---EEeccCc
Q 016446 204 KQENENLQILDVR-NAELMEV--SRTEF-----MTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GE-LV---TSFEDHL 268 (389)
Q Consensus 204 ~s~D~tIklWd~~-tg~~~~~--l~gh~-----~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G~-~l---~tl~gh~ 268 (389)
+..|=.|.||+++ +-++... .+.|. .-|++.-|+|. ..+|+-++ -|+|||-|++ .. |. +.++...
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5688999999987 3333222 33443 35778889884 45666665 9999999996 22 22 2233222
Q ss_pred CCcC-------CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC-CCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 269 LWHP-------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 269 ~~~~-------~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~-~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
++.+ ...|..|.||++|+||+|-.- -||||||+ ...+.+.+.+-|...
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy------------ltvk~wD~nme~~pv~t~~vh~~l------------ 316 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY------------LTVKLWDLNMEAKPVETYPVHEYL------------ 316 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc------------ceeEEEeccccCCcceEEeehHhH------------
Confidence 2110 013688999999999998532 79999999 678889999988721
Q ss_pred CCccccccccceeccc-ccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTV-GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~-~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.++-+.+ +...-.=..++||-++..+.|||..+.+|+.+
T Consensus 317 --------r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 317 --------RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred --------HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 00000000 00001345689999999999999999999876
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=107.07 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=168.8
Q ss_pred ccccEEEEEee----ccEEEEEecCceEEEEecccceeeee------eecCCcceEEEEEEeeCCCEEEEEEEeecCCCc
Q 016446 2 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICF------LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 71 (389)
Q Consensus 2 ~~~~v~~i~~~----~~~~a~~~~~gtiklW~~~tg~~l~t------l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~ 71 (389)
++.+|...+|. .+++...+-+..+.....+-+.+... +.+. ...|..++.. || +|+++. .+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~-~~~I~gl~~~-dg-~Litc~----~s-- 124 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLG-TKSIKGLKLA-DG-TLITCV----SS-- 124 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccc-cccccchhhc-CC-EEEEEe----cC--
Confidence 34556666666 44444444666666666654444433 2333 2456666553 34 455532 22
Q ss_pred ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC--CeEEEEeCCCCeEEEEecCCcEEEEEE
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISDKHVQEIKI 149 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D--~tiklWdl~~g~~l~tl~~~~V~~vaf 149 (389)
..+.+|.+..+........+- ........|.=++.+-.++|+|+-. ..+++||+++++.+++.+. |
T Consensus 125 ----G~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN--v----- 192 (412)
T KOG3881|consen 125 ----GNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN--V----- 192 (412)
T ss_pred ----CcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC--C-----
Confidence 445666666665432211111 1112223354443334577788888 8999999988866555431 1
Q ss_pred cCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCe-EEEEcccC
Q 016446 150 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTE 227 (389)
Q Consensus 150 S~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh 227 (389)
|+.+| +.-|.+|+. .+.|.+++ ..++|++..-+.+|+||.+.++ ++..+.--
T Consensus 193 -pnD~L--------~LrVPvW~t-----------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~ 246 (412)
T KOG3881|consen 193 -PNDRL--------GLRVPVWIT-----------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL 246 (412)
T ss_pred -CCccc--------cceeeeeec-----------------cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc
Confidence 45454 245777873 23454332 4677777888899999988754 56666666
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...+.++..-|.|+.+.++. -+.+...|.+ |+++.. |.|-.+. +.+|.-.|.+++|||++-|
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs-----irsih~hp~~~~las~GLD---------- 311 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGLD---------- 311 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC-----cceEEEcCCCceEEeeccc----------
Confidence 77899999999999999998 9999999997 776654 7777765 7999999999999999765
Q ss_pred CCeEEEEeCCCCeEEEEe
Q 016446 305 AGSINVSSILTGKCLAKI 322 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl 322 (389)
..+||.|++|-+++...
T Consensus 312 -RyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 312 -RYVRIHDIKTRKLLHKV 328 (412)
T ss_pred -eeEEEeecccchhhhhh
Confidence 99999999998877554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=107.20 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=166.0
Q ss_pred eEEEe-cCCCeEEEEecCCCeEEEEeCCCCeEEEEe------c--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCC
Q 016446 105 FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------S--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 105 ~v~Fs-~pdG~~Las~s~D~tiklWdl~~g~~l~tl------~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+++|- .++.+.|.-.+.|..+.........+...+ + ...|...+..+|..++ +-+ ++.+++|.++.|
T Consensus 60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Lit-c~~---sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLIT-CVS---SGNLQVRHDKSG 135 (412)
T ss_pred hheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEE-Eec---CCcEEEEeccCC
Confidence 45554 133455766767777777777665554332 2 3578888888877664 422 268999998843
Q ss_pred e----EEEEEeecCCceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCeEEEEcccC-----------CCceEEEEEcC
Q 016446 176 T----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLY 238 (389)
Q Consensus 176 ~----~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D--~tIklWd~~tg~~~~~l~gh-----------~~~v~sv~fsp 238 (389)
- .+..+..+ ..+..|.-.+.++..+|+|+.. ..++|||+++. .+++.+- .-|+.++.|.|
T Consensus 136 d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 136 DLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred ccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccceecC
Confidence 3 33344422 4444555444445666778887 89999999887 3444332 23678899999
Q ss_pred C--CcEEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 239 E--NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 239 d--g~~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+ .+.||++. -+.+|+||.+ + +.+..+.--..+ +.++...|+|++|..|-. -+.+..+|+
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~ 276 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDL 276 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecc
Confidence 8 99999998 9999999996 4 467666544444 799999999999999854 388999999
Q ss_pred CCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 314 LTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 314 ~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+|+++.. ++|-+ ..|.+|-.+|.++.|||++-|.-|||.|.
T Consensus 277 r~~kl~g~~~kg~t----------------------------------Gsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 277 RGGKLLGCGLKGIT----------------------------------GSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCceeeccccCCcc----------------------------------CCcceEEEcCCCceEEeeccceeEEEeec
Confidence 99998866 77776 47999999999999999999999999873
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=104.61 Aligned_cols=236 Identities=9% Similarity=0.052 Sum_probs=146.9
Q ss_pred EEEeeccEEEEEecCc--eEEEEecc-cceeeeeeecCCcceEEEEEEeeCCCE-EEEEEEeecCCCcceeeeeeeEeEe
Q 016446 8 EIVAARDIVFALAHSG--VCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 8 ~i~~~~~~~a~~~~~g--tiklW~~~-tg~~l~tl~~~~~~~v~sv~~spdg~~-l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+.|+..+++...+.+ .-+||=.+ .|...+.+... ....+-.|||||+. ++.++. .+.+ .++.++++
T Consensus 150 ~~~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~-~~~~------~~Iyv~dl 220 (419)
T PRK04043 150 SIDWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSY-GERK------PTLYKYNL 220 (419)
T ss_pred CcCceeeEEEEEEccCCCcceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEc-cCCC------CEEEEEEC
Confidence 3456666666665443 34444322 27666666654 37789999999996 555443 3234 57888898
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEE-ecCC--CeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQD--SIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las-~s~D--~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~ 157 (389)
.+|+. ..+.. ..+.....+|| |||+.|+. .+.+ ..|.+.|+.+++.. .+. . .....-.|| ||+.|+.
T Consensus 221 ~tg~~---~~lt~--~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F 293 (419)
T PRK04043 221 YTGKK---EKIAS--SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVF 293 (419)
T ss_pred CCCcE---EEEec--CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEE
Confidence 88874 33432 22333457898 89987664 3333 45667788777743 333 2 223456899 6888877
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC---------CcEEEEECCCCeEEEEcccCC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---------ENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D---------~tIklWd~~tg~~~~~l~gh~ 228 (389)
.+.......|.+.|+.+|+..+.... +. ....++ |+++.|+..+.. ..|.+.|+++|+..+...+
T Consensus 294 ~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-- 367 (419)
T PRK04043 294 VSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-- 367 (419)
T ss_pred EECCCCCceEEEEECCCCCeEeCccC--CC-cCceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--
Confidence 76444444788899999887544331 21 234676 789988886532 3678889999987554433
Q ss_pred CceEEEEEcCCCcEEEEEc--CCe--EEEEeCCCcEEEEec
Q 016446 229 MTPSAFIFLYENQLFLTFR--NRT--VAVWNFRGELVTSFE 265 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s--D~t--IklWd~~G~~l~tl~ 265 (389)
..-....|+|||+.|+-.+ .+. +.+.+++|.-.+.|.
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 2334688999999887664 333 445556676544443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=114.59 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=122.2
Q ss_pred EecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeE-EEEeCCCcEEEEE
Q 016446 138 SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKL-LVKQENENLQILD 214 (389)
Q Consensus 138 tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd 214 (389)
+.|.+=|++++++ +|..||++ |+|..+-+||...-+++..+. +|+..|++|.|.|..+..| +++..|..|||+|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SG---SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASG---SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecCCCCEEeec---CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4455679999999 89999875 667899999999888998886 9999999999997666555 4567999999999
Q ss_pred CCC----------CeEEEEcccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCCC--cEEEEeccCcCCcC----CCCe
Q 016446 215 VRN----------AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFRG--ELVTSFEDHLLWHP----DCNT 276 (389)
Q Consensus 215 ~~t----------g~~~~~l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~G--~~l~tl~gh~~~~~----~~~v 276 (389)
+.. -+......-|...|..+|--|++ ..+-|++ ||||+-+|+.- .|-.....|+..+. .-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 12344456799999999999999 8899999 99999999852 33222221211000 0125
Q ss_pred eEEEECCC-CCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 277 NNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 277 ~sv~fSpd-G~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.++.+||. -.+||.|+. |--+||+|.
T Consensus 204 k~ltisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eeeeecCCCCceEEecCC-----------Cchhhhhhh
Confidence 78999995 567777654 578999994
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=110.88 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=106.4
Q ss_pred CCCeeEEEEEcCCCeE----------EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CeE--EEEcccC
Q 016446 162 SSHVPLKILSIEDGTV----------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AEL--MEVSRTE 227 (389)
Q Consensus 162 s~d~tiklWd~~tG~~----------l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--g~~--~~~l~gh 227 (389)
-+++.+-+||+.+|.. ......|.+++.+|.|. +.-..=++++.+..+-.|+++. |.+ .....--
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 3457899999999833 33334577889999996 3334556677888888888763 444 2222223
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
+-.|..|..-||++.|||++ |+.||++.-+ +..|..|+-|... |++||||||-..+|++|+|
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaaskD----------- 314 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASKD----------- 314 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccCC-----------
Confidence 44688899999999999999 9999999997 9999999999876 8999999999999999876
Q ss_pred CeEEEEeC
Q 016446 306 GSINVSSI 313 (389)
Q Consensus 306 ~tIklWd~ 313 (389)
++|-||++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 89999985
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=106.49 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=183.3
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|.+||++++.+.+ +-|.+|=|.++-+.- -+.|--|-++.|.-.++.+. + .| --+.+|++.+.+. ..
T Consensus 20 g~yiAs~~~yrlv-iRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~-y--k~------~~vqvwsl~Qpew--~c 85 (447)
T KOG4497|consen 20 GNYIASLSRYRLV-IRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA-Y--KD------PKVQVWSLVQPEW--YC 85 (447)
T ss_pred CCeeeeeeeeEEE-EeccchhhHHHHHHH--HHHhhheeeeccceeeeeee-e--cc------ceEEEEEeeccee--EE
Confidence 8888888877443 556553332221111 13455667777777766642 1 23 3567788877765 12
Q ss_pred eeEeeecccCceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 93 ALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
++ .+......++.+| ||| .+|.+...|-.|.+|.+.|.++.+.-+ ...+..++|. +|++.|..+.-.--..+.|
T Consensus 86 kI--deg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 86 KI--DEGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred Ee--ccCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 21 1222223468998 899 577788899999999998888755444 5678999999 6887777643322123334
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s- 247 (389)
..-+.-++++.+.-.+--...+.++ |+ +.-+-+||--- --+++.-|- -.+..++++|-+|+||-|+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWs-Pd---------g~~laVwd~~L--eykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWS-PD---------GNWLAVWDNVL--EYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceEC-CC---------CcEEEEecchh--hheeeeeeeccceeEEEeccccceEEeecc
Confidence 3333344555555433444677787 54 44555665210 011111122 3577899999999999999
Q ss_pred CCeEEEEe-----CCCcEE--------------------------------------------------------EEecc
Q 016446 248 NRTVAVWN-----FRGELV--------------------------------------------------------TSFED 266 (389)
Q Consensus 248 D~tIklWd-----~~G~~l--------------------------------------------------------~tl~g 266 (389)
|+.+|+-| .-||.+ .+|+.
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998754 112211 01110
Q ss_pred Cc-CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 267 HL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 267 h~-~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
-. -+.|-|.+--++||||.+|+|+-.. .--+.+-|||++.-++-+.|..-
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd---------~~PnalW~Wdlq~l~l~avLiQk-------------------- 361 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRND---------KYPNALWLWDLQNLKLHAVLIQK-------------------- 361 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecC---------CCCceEEEEechhhhhhhhhhhc--------------------
Confidence 00 0223346678999999999998532 23467999998865554444321
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+|.+..++|....|+-.-.---+.+|
T Consensus 362 ---------------~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 362 ---------------HPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred ---------------cceeEEEeCCCCceEEEEcCCceEEEE
Confidence 489999999998887765544335555
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-08 Score=102.13 Aligned_cols=201 Identities=8% Similarity=0.039 Sum_probs=133.1
Q ss_pred ceeEEEecCCCeE-EEEecCC---CeEEEEeCCCCeEEEEe-cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 103 PGFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~-Las~s~D---~tiklWdl~~g~~l~tl-~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
..+-.|| |||+. ++..+.+ ..|.++|+.+|+...-. ..+.+...+|| ||..||.......+..|.+.|+.+|+
T Consensus 190 ~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 190 NIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred eEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 3468998 99984 6655443 57888899988854322 34556678899 68788776655556788889998887
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C----
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---- 248 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---- 248 (389)
. +.++.+........|+ |||..|+..+ ..+ .|-+.|+.+|+..+...... . ...|||||+.||-.+ .
T Consensus 269 ~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 269 L-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred E-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcc
Confidence 4 4455433334456787 7898888876 333 67777999988866543211 1 248999999988765 3
Q ss_pred ---C--eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 249 ---R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 249 ---~--tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ .|.+-|+++...+.|.... . .....|||||++|+-.+.+ +....+.+.++. |+-...|.
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~~--------~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANG-V-----NQFPRFSSDGGSIMFIKYL--------GNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCC-C-----cCCeEECCCCCEEEEEEcc--------CCcEEEEEEecC-CCeeEEee
Confidence 2 5666687743445566442 1 2468899999999877653 222347777754 65555554
Q ss_pred C
Q 016446 324 A 324 (389)
Q Consensus 324 g 324 (389)
.
T Consensus 409 ~ 409 (419)
T PRK04043 409 L 409 (419)
T ss_pred c
Confidence 3
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-08 Score=97.88 Aligned_cols=286 Identities=10% Similarity=0.065 Sum_probs=171.9
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcce
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 93 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~ 93 (389)
-+|-.+..++.|.+|++.+-+--|.+.-+. ..+-++.+||||.-|...|. .+ -.|.+|.+.+.+..
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~-agls~~~WSPdgrhiL~tse---F~------lriTVWSL~t~~~~---- 127 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQ-AGLSSISWSPDGRHILLTSE---FD------LRITVWSLNTQKGY---- 127 (447)
T ss_pred eeeeeeeccceEEEEEeecceeEEEeccCC-CcceeeeECCCcceEeeeec---ce------eEEEEEEeccceeE----
Confidence 356677888999999998888888888876 78999999999976766654 44 56788998776641
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC---eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g---~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
+-.+- ...+..++|. ||||+.|-++....-..-++... +++..+. .-....+-+| ||..||
T Consensus 128 ~~~~p-K~~~kg~~f~-~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----------- 194 (447)
T KOG4497|consen 128 LLPHP-KTNVKGYAFH-PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----------- 194 (447)
T ss_pred Eeccc-ccCceeEEEC-CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE-----------
Confidence 11100 0112459997 99999998875311101111000 0122222 1234556666 355544
Q ss_pred EEEEcCCCeEEEEEeec-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------------------------
Q 016446 168 KILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--------------------------- 219 (389)
Q Consensus 168 klWd~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~--------------------------- 219 (389)
+||.- -.-+.+..| +-.+..|+++ |-++.|+.|+.|+.+|+-|--+-+
T Consensus 195 -Vwd~~--Leykv~aYe~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 195 -VWDNV--LEYKVYAYERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred -Eecch--hhheeeeeeeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 44411 001111211 1345666666 556666667777777664322210
Q ss_pred ---------------------------------EEEEccc------CCCceEEEEEcCCCcEEEEEcC---CeEEEEeCC
Q 016446 220 ---------------------------------LMEVSRT------EFMTPSAFIFLYENQLFLTFRN---RTVAVWNFR 257 (389)
Q Consensus 220 ---------------------------------~~~~l~g------h~~~v~sv~fspdg~~laS~sD---~tIklWd~~ 257 (389)
.++.++. -.-.+.-++||+|.+++||-.| +-+-|||++
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence 1112221 1224667899999999999864 578899998
Q ss_pred -CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccC
Q 016446 258 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 336 (389)
Q Consensus 258 -G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~ 336 (389)
-++-..|.. ..+ |....+.|....|+-.-.. --+.+|-..--.++.. .+.
T Consensus 351 ~l~l~avLiQ-k~p-----iraf~WdP~~prL~vctg~-----------srLY~W~psg~~~V~v-P~~----------- 401 (447)
T KOG4497|consen 351 NLKLHAVLIQ-KHP-----IRAFEWDPGRPRLVVCTGK-----------SRLYFWAPSGPRVVGV-PKK----------- 401 (447)
T ss_pred hhhhhhhhhh-ccc-----eeEEEeCCCCceEEEEcCC-----------ceEEEEcCCCceEEec-CCC-----------
Confidence 555544542 233 7889999998888875421 3478898542222211 111
Q ss_pred CCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 337 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
| -.|..|.+..+|..|+-.++|.
T Consensus 402 --G---------------------F~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 402 --G---------------------FNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred --C---------------------ceeeeEEecCCCcEEEEEcCCc
Confidence 1 2688889999999888888875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-08 Score=96.65 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=130.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCc-eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE-EEEcCC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE-IKISPG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~-~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~-vafS~g 152 (389)
..+.-.|..+|+. +|.......+ ..++. ++..+..++.|+.+.-+|.++|+.+.... ...+.+ ..+. +
T Consensus 75 g~v~a~d~~tG~~-----~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~-~ 145 (377)
T TIGR03300 75 GTVVALDAETGKR-----LWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA-N 145 (377)
T ss_pred CeEEEEEccCCcE-----eeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE-C
Confidence 3455567788886 6653322221 12443 24455567789999999999999987665 333332 2222 4
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe--cCCCeEEEEeCCCcEEEEECCCCeEEEEcccC---
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTE--- 227 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~--~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh--- 227 (389)
+++... ..++.+..||.++|+.+.+++............. ..++.++++..++.+..+|+++|+.+-...-.
T Consensus 146 ~~v~v~---~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 146 GLVVVR---TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CEEEEE---CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 445444 2357899999999999988764322110000000 12467778889999999999999876543211
Q ss_pred --CC--ceEEEE---EcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 228 --FM--TPSAFI---FLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 228 --~~--~v~sv~---fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
.. .+..+. .-.++.++++..++.+..+|.+ |+.+-..+.. .. ...+ .++..+..++.
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~------~~p~--~~~~~vyv~~~------ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SY------QGPA--VDDNRLYVTDA------ 287 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-Cc------cCce--EeCCEEEEECC------
Confidence 00 001111 1125555554459999999996 9987766521 11 1222 24555655543
Q ss_pred ccCCCCCeEEEEeCCCCeEEEEe
Q 016446 300 WMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg~~l~tl 322 (389)
||.|..+|..+|+.+...
T Consensus 288 -----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 -----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred -----CCeEEEEECCCCcEEEcc
Confidence 599999999999988665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=110.13 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=86.2
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
+.+++.+|+ ||+..||.-|.|+.+||+|..+.+++-+++--.....+|+|||||++|++|+ |..|.+|.+. ++.+..
T Consensus 291 g~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 291 GSINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ccccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 567888898 6899999999999999999999999999999999999999999999999999 9999999996 999999
Q ss_pred eccCcCCcCCCCeeEEEECC
Q 016446 264 FEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSp 283 (389)
=+||..| |..|+|.|
T Consensus 370 GqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSW-----VSVVAFDP 384 (636)
T ss_pred ccccccc-----eeeEeecc
Confidence 9999999 79999986
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-07 Score=86.57 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=132.8
Q ss_pred eeeEeEeccCCCCCcceeEeeec---ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE-EEEcC
Q 016446 77 STKIEYIRRGKPDSGFALFESES---LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE-IKISP 151 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~---~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~-vafS~ 151 (389)
++..+|.++|+. +|.... ..++...++ +++..|..++.++.+..||..+|+.+.+.. ...+.. ....+
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 444566667765 666432 222111134 234455556899999999999999886665 222211 23334
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEE-eecCC--ce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLH--RN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl-~~~~~--~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
+..+ ... .++.|..+|+++|+.+.+. ..... .. ...... ..++.++++..++.|..+|+++|+.+-....+
T Consensus 77 ~~v~-v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVY-VGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TEEE-EEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccc-ccc---ceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 5444 443 3358999999999999985 32211 11 111221 23788888889999999999999997776554
Q ss_pred CCc----------eEEEEEcCCCcEEEEEcCC-eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCC
Q 016446 228 FMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 295 (389)
Q Consensus 228 ~~~----------v~sv~fspdg~~laS~sD~-tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~ 295 (389)
... +..-....++.++++..++ .+.+ |+. |+.+-... ... +.. .+.++|.+|+.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~-----~~~-~~~~~~~~l~~~~~-- 220 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISG-----IYS-LPSVDGGTLYVTSS-- 220 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS------ECE-CEECCCTEEEEEET--
T ss_pred CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCC-----ccC-CceeeCCEEEEEeC--
Confidence 322 1222333456666666666 5878 996 88654322 111 122 24678899988874
Q ss_pred CcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 296 PEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 296 ~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|+.|..||+.||+.+.+
T Consensus 221 ---------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 ---------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ---------TTEEEEEETTTTEEEEE
T ss_pred ---------CCEEEEEECCCCCEEeE
Confidence 49999999999998754
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=98.51 Aligned_cols=213 Identities=10% Similarity=0.025 Sum_probs=149.7
Q ss_pred CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC-
Q 016446 141 DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 215 (389)
Q Consensus 141 ~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~- 215 (389)
-+.|.+-||+ |++++|.+. .+ +.|.|..... -+..++|..|-..+..|.++ |...+|++++.|..-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~-~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-NN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEecc-CC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 4789999999 888998864 33 4566655443 45789999999999999998 66789999999999999998
Q ss_pred CCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcC-CcCCCCeeEEEECCCCCEEEEE
Q 016446 216 RNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 216 ~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~-~~~~~~v~sv~fSpdG~~laS~ 291 (389)
..|+- .-.|.-|+.+...|.|+|....||.|+ -+.|-+|-+++|---=...|.. +++ ..|.++.+.|++-+||.|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir-Stv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR-STVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc-cceeeeeccCCcceeccc
Confidence 44543 223456888999999999999999999 8999999987652110111211 111 238999999999999998
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc-cccceecccccccCCEEEEEECC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN-KSSYIRSTVGEALEDITSLFYDE 370 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~svafSp 370 (389)
|.| +..|++.. .|+-+..-. .+.+-|+.+ .+. -|.+.... + .+|..|.|||
T Consensus 165 s~D-----------~k~rVfSa----yIK~Vdekp------ap~pWgsk~---PFG~lm~E~~~~-g---gwvh~v~fs~ 216 (361)
T KOG1523|consen 165 STD-----------GKCRVFSA----YIKGVDEKP------APTPWGSKM---PFGQLMSEASSS-G---GWVHGVLFSP 216 (361)
T ss_pred ccC-----------cceeEEEE----eeeccccCC------CCCCCccCC---cHHHHHHhhccC-C---CceeeeEeCC
Confidence 765 89999973 233332211 001111100 000 02222111 1 5999999999
Q ss_pred CCCEEEEecCCCcEEE
Q 016446 371 ERNEIYTGNRHGLVHV 386 (389)
Q Consensus 371 dg~~LaSgs~D~tIrl 386 (389)
+|..||=.+.|.+|-+
T Consensus 217 sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSF 232 (361)
T ss_pred CCCEeeEecCCCceEE
Confidence 9999999999999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-09 Score=107.15 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=147.2
Q ss_pred eCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-C
Q 016446 54 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N 132 (389)
Q Consensus 54 pdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~ 132 (389)
|-++++|. .+.| ..+++|+...+++ ..+|- |.- +.+.-++.-.|.|. .
T Consensus 3 ~~~~~~A~----~~~~------g~l~iw~t~~~~~----------------~~e~~-p~~----~~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFAL----STGD------GRLRIWDTAKNQL----------------QQEFA-PIA----SLSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEee----cCCC------CeEEEEEccCcee----------------eeeec-cch----hccCcceeEEEEEEec
Confidence 33566666 4456 7788999888874 25665 643 34556788899864 3
Q ss_pred CeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCc
Q 016446 133 YTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENEN 209 (389)
Q Consensus 133 g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~t 209 (389)
+.|+....-.++ ..-| +-.+|+-+.. .+.|-+.++..|+.-.+|. .|-++|.++... ..-+.|-+++.|+.
T Consensus 52 ~s~~k~~~~~~~--~~~s~~t~~lvlgt~---~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 52 YSPMKWLSLEKA--KKASLDTSMLVLGTP---QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLK 125 (541)
T ss_pred cchHHHHhHHHH--hhccCCceEEEeecC---CccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCcee
Confidence 335433321111 1112 2223333221 2578888999999999998 677888888876 45678889999999
Q ss_pred EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC----
Q 016446 210 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---- 284 (389)
Q Consensus 210 IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd---- 284 (389)
+-.|+.+++..+....+.+..+.+++.+|||..|++++ ++||+||++ +|.+.+|+||.++ |+++.|.-+
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGI 199 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEecccc
Confidence 99999999999999999999999999999999998775 789999997 9999999999998 799999988
Q ss_pred -CCEEEEEe
Q 016446 285 -QDLIISYC 292 (389)
Q Consensus 285 -G~~laS~s 292 (389)
|+++.|+.
T Consensus 200 ~G~~vLssa 208 (541)
T KOG4547|consen 200 IGKYVLSSA 208 (541)
T ss_pred ccceeeecc
Confidence 88888853
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=109.87 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=199.8
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeC--CCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd--g~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
-|--|.|- |+.+++++.|..|-+||-.+++....+..+|.+-|.---|=|+ -++|++. +.| .++++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~----s~d------gqvr~ 213 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS----SRD------GQVRV 213 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec----ccc------Cceee
Confidence 35556676 9999999999999999988888877777777666555556666 5678884 455 67766
Q ss_pred eEe-ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--c--C-C---cEEEEEEcC
Q 016446 81 EYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S--D-K---HVQEIKISP 151 (389)
Q Consensus 81 ~~i-~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~--~-~---~V~~vafS~ 151 (389)
-.+ .+|.+..+..+-.++- ++.-++--|..-.-+.|++.|+.++=.|+.++.+...+ . . . ...+++..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g--~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEG--PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccC--ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 665 6676655555655443 33344443223356889999999999999877754333 2 1 2 457788876
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCe------EEEEEe-ecC-----CceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGT------VLKVFY-HLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~------~l~tl~-~~~-----~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t 217 (389)
-..+|++ +.|..+|++|...=+ .+.+|. .|. -.|..++|+ .++.-|+++-.|.-|.|.+-.-
T Consensus 292 ~nt~~faVg---G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 292 RNTNEFAVG---GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred CCccccccC---ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEecccc
Confidence 3366664 667899999865311 223332 221 245788887 5678899999999999996543
Q ss_pred --C----------eEE-EEcccCCC--ceEEEEE-cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 218 --A----------ELM-EVSRTEFM--TPSAFIF-LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 218 --g----------~~~-~~l~gh~~--~v~sv~f-spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
| ..+ ++.+||.. .|..|-| -|...+++||| -|.|-||+.. |++++-|+|-.. + |+++
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-V----VNCL 442 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-V----VNCL 442 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-e----Eecc
Confidence 3 222 33788865 5667766 69999999999 7999999997 999999998665 3 8999
Q ss_pred EECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 280 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.=.|-=-.|||.+-| ..||||--.+-+
T Consensus 443 EpHP~~PvLAsSGid-----------~DVKIWTP~~~e 469 (559)
T KOG1334|consen 443 EPHPHLPVLASSGID-----------HDVKIWTPLTAE 469 (559)
T ss_pred CCCCCCchhhccCCc-----------cceeeecCCccc
Confidence 999999999997664 799999865433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-06 Score=79.74 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=146.7
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
.+++|.+.+|.++.+.-..++|.-|+..+++... +.......+++. +++.|+.+... .+.+.|+.+|+....+.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~----~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSG----GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETT----CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcC----ceEEEecCCCcEEEEee
Confidence 5688983389999998899999999998877532 222227888888 76777666543 45666999997655554
Q ss_pred e-----cCCceeEEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE-EEc-
Q 016446 183 H-----LLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR- 247 (389)
Q Consensus 183 ~-----~~~~~~~v~f~~~~~~~l~~~s~D--------~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la-S~s- 247 (389)
. .....+.+++. ++|...++.... +.|-.++.. +++..... .....+.++|+|||+.|. +-+
T Consensus 78 ~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 3 23445888887 556655554322 456777776 66555443 456789999999998665 556
Q ss_pred CCeEEEEeCC--Cc-E-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 248 NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 248 D~tIklWd~~--G~-~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
.+.|.-++++ +. + +..+.+-.. ..-.+++.++|++.++... .+.|...|.. |+.+
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-----~pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPG-----YPDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GKLL 217 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSC-----EEEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SCEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCc-----CCCcceEcCCCCEEEEEcC-----------CCEEEEECCC-ccEE
Confidence 8888888874 33 2 222222211 1358999999999887543 2799999955 9999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE-CCCCCEEEEec
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 379 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf-Spdg~~LaSgs 379 (389)
..+.--. ..+++++| -||.++|+-.+
T Consensus 218 ~~i~~p~----------------------------------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 REIELPV----------------------------------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE-SS----------------------------------SSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCC----------------------------------CCEEEEEEECCCCCEEEEEe
Confidence 8886543 47999999 58888776544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=112.82 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=129.3
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcC--CCcEEEEEc-CCeEE
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVA 252 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fsp--dg~~laS~s-D~tIk 252 (389)
..+.|+||++.|+.++|+ .+|+.|++||.|-.+-|||.-..++++.+ .||..-|.++.|.| +.++++||. |..||
T Consensus 42 lE~eL~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 346789999999999998 67999999999999999999887776654 79999999999988 577899998 99999
Q ss_pred EEeCCC-----------cEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEE
Q 016446 253 VWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCL 319 (389)
Q Consensus 253 lWd~~G-----------~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l 319 (389)
|.|++. +..+.+..|... |..+|--|+| ...-|+|+ |||||=.|+.. -.|-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~r-----VKria~~p~~PhtfwsasE-----------DGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDR-----VKRIATAPNGPHTFWSASE-----------DGTIRQYDIREPHVCN 184 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhh-----hhheecCCCCCceEEEecC-----------CcceeeecccCCccCC
Confidence 999851 234456677776 6888888988 77777765 59999999873 1222
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEcc
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~ 388 (389)
.....|+ .+++-.++ +-...+++.||.. .+||-|+.|--+||+|
T Consensus 185 p~~~~~~------------------------~l~ny~~~-lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 185 PDEDCPS------------------------ILVNYNPQ-LIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred ccccccH------------------------HHHHhchh-hheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 2222222 11111111 1246789999977 6899999999999987
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-07 Score=95.50 Aligned_cols=309 Identities=15% Similarity=0.232 Sum_probs=198.9
Q ss_pred EEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCc----ceeeeeeeEeE
Q 016446 9 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS----SLKCRSTKIEY 82 (389)
Q Consensus 9 i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~----~l~~~~~~l~~ 82 (389)
+.+| |-+|++- +-+-|.||--++-..++.+ +| -.|.-|-|||.-++|++=|. .... -=..+++.|||
T Consensus 216 v~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTF-HKQGIALWGGESFDRIQRF--YH-PGVQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEE-eccceeeecCccHHHHHhc--cC-CCceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 4455 7777765 4555679975544444433 45 57899999999999999443 1100 01237899999
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEcC-CceEEEEe
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS~-g~~la~~~ 159 (389)
|++|.+..+.+.+......|| -+.+| -|++++|--.. .+|-|++...-.++ .+++-..|....+|| ++.||.=.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999998544444433344443 36888 79999997665 57889985443332 344457899999998 66666554
Q ss_pred cCCCCe--eEEEEEcCCCeEEEEEeecCCceeEEEEE-ecCCCeEEEEeCC----C------cEEEEECCCCeE-EEEcc
Q 016446 160 RSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFI-EQFNEKLLVKQEN----E------NLQILDVRNAEL-MEVSR 225 (389)
Q Consensus 160 ~~s~d~--tiklWd~~tG~~l~tl~~~~~~~~~v~f~-~~~~~~l~~~s~D----~------tIklWd~~tg~~-~~~l~ 225 (389)
..-.+. ++-|-.+.+++.|++-.- .+|-.+... ...|++|...-.- + .+.|.-++.... +.. -
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-v 442 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-V 442 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-e
Confidence 443332 566788889999988663 344333322 2346677664311 1 233343333322 111 1
Q ss_pred cCCCceEEEEEcCCCcEEEEEc----CCeEEEEeCC--C---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s----D~tIklWd~~--G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
.-...|-.++|-|.|..++.-+ -.|+..+.++ + +++..|..- . .+.|.|||.|+++|.+.-
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-~------~N~vfwsPkG~fvvva~l--- 512 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-F------ANTVFWSPKGRFVVVAAL--- 512 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-c------cceEEEcCCCcEEEEEEe---
Confidence 2345788899999999987654 4589999875 2 467777652 2 489999999999999865
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 375 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L 375 (389)
.|.-|.+...|..-..|..+ ...|- .-+.+.+.|-|+++
T Consensus 513 -----~s~~g~l~F~D~~~a~~k~~~~~eh~-----------------------------------~at~veWDPtGRYv 552 (698)
T KOG2314|consen 513 -----VSRRGDLEFYDTDYADLKDTASPEHF-----------------------------------AATEVEWDPTGRYV 552 (698)
T ss_pred -----cccccceEEEecchhhhhhccCcccc-----------------------------------ccccceECCCCCEE
Confidence 35668899999764344322 12232 45668999999999
Q ss_pred EEecC
Q 016446 376 YTGNR 380 (389)
Q Consensus 376 aSgs~ 380 (389)
+++|.
T Consensus 553 vT~ss 557 (698)
T KOG2314|consen 553 VTSSS 557 (698)
T ss_pred EEeee
Confidence 99985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-08 Score=97.28 Aligned_cols=283 Identities=11% Similarity=0.108 Sum_probs=162.2
Q ss_pred EEEEee--ccEEEEEecCceEEEEecccce-----eeeeeecCCc-----------ceEEEEEEeeCCCEEEEEEEeecC
Q 016446 7 IEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPD-----------EVIRSLFYNKNNDSLITVSVYASD 68 (389)
Q Consensus 7 ~~i~~~--~~~~a~~~~~gtiklW~~~tg~-----~l~tl~~~~~-----------~~v~sv~~spdg~~l~s~s~~~~~ 68 (389)
..|-|. |++||+|..+|.|-++.++.-. ..-+++-|.- +.|+.|.+-++++.--. -..+.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F--LlstN 106 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF--LLSTN 106 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE--EEecC
Confidence 345555 9999999999999999875422 2334444321 24889999998772111 11346
Q ss_pred CCcceeeeeeeEeEeccCCCCC--cceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEecCCcEE
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDS--GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQ 145 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~--~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl~~~~V~ 145 (389)
| +++++|-+.....-. ..... ....+.+.++.. .+-+..|-.|-. ..+.+ ...|...|.
T Consensus 107 d------ktiKlWKi~er~~k~~~~~~~~-~~~~~~~~~lr~-------p~~~~~~~~vea----~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 107 D------KTIKLWKIRERGSKKEGYNLPE-EGPPGTITSLRL-------PVEGRHDLEVEA----SPRRVYANAHTYHIN 168 (433)
T ss_pred C------cceeeeeeeccccccccccccc-cCCCCccceeec-------eeeccccceeee----eeeeeccccceeEee
Confidence 6 566666553322100 00000 111111222211 111112222210 11111 122445788
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEEE-------eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 216 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl-------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~ 216 (389)
++.++ |+++++++ +|-.|-||+++ +-++.... +..+.-+.+..|+|..--.++-++.-|+|||-|++
T Consensus 169 SIS~NsD~Et~lSA----DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 169 SISVNSDKETFLSA----DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeeecCccceEeec----cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 88888 78887654 35688888876 22333221 11122245666764333455557888999999998
Q ss_pred CCe-EE---EEc------------ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--CcEEEEeccCcC--------C
Q 016446 217 NAE-LM---EVS------------RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLL--------W 270 (389)
Q Consensus 217 tg~-~~---~~l------------~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~--G~~l~tl~gh~~--------~ 270 (389)
... |. +.+ .+--..|..|-||+.|++++|=.=-||||||++ .+.+.|..-|.. .
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 432 21 111 222346888999999999987666899999984 777777776653 1
Q ss_pred cCCC--CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-EEEEecC
Q 016446 271 HPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINA 324 (389)
Q Consensus 271 ~~~~--~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-~l~tl~g 324 (389)
..|| .-..++||-|+.++++||-. +-.|++++..|. .-.++.+
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~-----------n~frvf~~~~gsk~d~tl~a 370 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYN-----------NVFRVFNLARGSKEDFTLEA 370 (433)
T ss_pred hccchhheeEEEEcCCcceEeccccc-----------ceEEEecCCCCcceeecccc
Confidence 1112 12568899999999999864 689999976654 2344444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=101.44 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=112.8
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcE-E
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQL-F 243 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~-l 243 (389)
.+++|. .-+|+-+.-|+ |+ -.++++..|-+||++|-.. .|...| ..-+..|.+++|-|.+.. |
T Consensus 92 ~vt~ws---~~dlr~~aWhq-H~----------~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 92 DVTLWS---EIDLRGVAWHQ-HI----------IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhhhhh---hcceeeEeech-hh----------hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCccee
Confidence 356665 24566665553 22 2344456899999999987 443333 334567999999997665 4
Q ss_pred EEEcCCeEEEEeCCCcE-------------EEEe--ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 244 LTFRNRTVAVWNFRGEL-------------VTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 244 aS~sD~tIklWd~~G~~-------------l~tl--~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
|-|.-+-|-||..+-.+ .+.| .||. .|.++.+.|||..|+++|.+ |..|
T Consensus 157 avgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------pVtsmqwn~dgt~l~tAS~g----------sssi 220 (445)
T KOG2139|consen 157 AVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------PVTSMQWNEDGTILVTASFG----------SSSI 220 (445)
T ss_pred eeeecceeEEEEcCcccccccccccccccchhheeCCCCc------eeeEEEEcCCCCEEeecccC----------cceE
Confidence 44457788899864221 1222 2442 28999999999999999987 5899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 309 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 309 klWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|||+.+|+++.-.. -. +..+.-|-|||||..|..+.-|++.+||+
T Consensus 221 ~iWdpdtg~~~pL~~-~g---------------------------------lgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIP-KG---------------------------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred EEEcCCCCCcccccc-cC---------------------------------CCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 999999999874441 11 13788899999999999999999999994
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-07 Score=93.67 Aligned_cols=286 Identities=14% Similarity=0.194 Sum_probs=164.1
Q ss_pred EEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 8 EIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 8 ~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
...++ +..+++.+.++.+++++..++..+.+.... -++.+-|||-|.+|.+==..+..+=.+-..-.+.+|++.+|
T Consensus 39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred eEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence 34445 667888888999999999888544444432 57999999999998761100000002222345557888775
Q ss_pred CCCCcceeEeee-cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecCCcEEEEEEcCC---ceEEEEe--
Q 016446 87 KPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKISPG---IMLLIFN-- 159 (389)
Q Consensus 87 ~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~~~V~~vafS~g---~~la~~~-- 159 (389)
...+. ++.- .-+ +...|+ +|..+.| ==..+.+.++++.+-+ ....|+...|..+++||| -.+|+--
T Consensus 116 ~~~s~---~q~k~Q~~--W~~qfs-~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 116 VQRSQ---IQKKMQNG--WVPQFS-IDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eehhh---eehhhhcC--cccccc-cchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 44211 0000 111 134444 3332111 1112344444443322 223333334444444433 1111110
Q ss_pred ------------------------------------------------cCCCC---------eeEEEEEcCCCeEEEEEe
Q 016446 160 ------------------------------------------------RSSSH---------VPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 160 ------------------------------------------------~~s~d---------~tiklWd~~tG~~l~tl~ 182 (389)
+..-| .++.+.++++-.|.-.|.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 01111 356666665444555554
Q ss_pred ecCCceeEEEEEecCCCeEEE--EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc----CCeEEEEeC
Q 016446 183 HLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF 256 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~--~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s----D~tIklWd~ 256 (389)
. .++|.+|.|+ +++..+++ |-.=.++-|+|++ |..+..+ -+++-+.+-|+|.|++|+-++ -|.|.+||+
T Consensus 269 k-~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 K-EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred C-CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 2 4789999998 55655555 4478899999984 4444433 234567788999999988664 589999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
. -+++..++.-. -.-..|+|||++++++... |-- =-|+.||||+. +|..+..
T Consensus 344 ~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTa-PRl----rvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTA-PRL----RVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred cchhhccccccCC-------ceEEEEcCCCcEEEEEecc-ccE----EecCCeEEEEe-cCceeeh
Confidence 5 78888887532 2457899999999998742 000 03688999995 5877643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-06 Score=85.02 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=130.0
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEE-EE--ec------C-------CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTML-YS--IS------D-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l-~t--l~------~-------~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t 174 (389)
.||+.++- +.-|.|.++|.++-++- .. |. . ......+.++|.++|.-+.+ .+-|-+...
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWD 350 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCC
Confidence 47887774 45678999998765521 11 11 0 11233455589999876544 566666555
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCC-cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~-tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
|-.++. +|.+.|+=..+. .+++..+.|-.|+ .+-|+|..+|+..+ +++.-..|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 666655 345667777775 5678888898888 99999999888644 456677899999999999999988 55777
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
+.|++ |.....=+...+. |...++||++++||=+-.+ +---+.|||.|+.+|+...
T Consensus 427 vididngnv~~idkS~~~l-----Itdf~~~~nsr~iAYafP~-------gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGL-----ITDFDWHPNSRWIAYAFPE-------GYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeeEecccccce-----eEEEEEcCCceeEEEecCc-------ceeeeeEEEEecCCCeEEE
Confidence 77886 7642211111222 7899999999999966432 2233689999999888643
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=72.95 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
|+|++++++|+ ..|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~----------------------------------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS----------------------------------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS----------------------------------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC----------------------------------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 68999999998 6999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-06 Score=79.07 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=134.5
Q ss_pred CCCeEEEEeCCCCeEEEEecC----CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 121 QDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~~----~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
.+++|..||+.+|+.+.+..- ......++.+++++.+++ .++.+..||+.||+.+.++... ..+..... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~--~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLP-GPISGAPV--V 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECS-SCGGSGEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecc-ccccceee--e
Confidence 378999999999999876641 222222443555665553 4479999999999999888742 32222112 3
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCC---CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 270 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~---~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~ 270 (389)
.++.++....|+.|..+|.++|+.+... .... ......+...++..++.+. ++.|...|+. |+++.....+...
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4778888888899999999999998773 3221 1112223333366666666 9999999986 9998877764422
Q ss_pred cCC-----CCeeEEEECCCCCEEEEEecCCCcccccCCCCC-eEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 271 HPD-----CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 271 ~~~-----~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~-tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
... ..+..-.+..+|..+++ +. ++ .+.+ |+.+|+.+....-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~-----------~g~~~~~-d~~tg~~~w~~~~~------------------- 202 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDGRVYVS-SG-----------DGRVVAV-DLATGEKLWSKPIS------------------- 202 (238)
T ss_dssp SS--EEEETTEEEEEECCTTEEEEE-CC-----------TSSEEEE-ETTTTEEEEEECSS-------------------
T ss_pred CCcceeeecccccceEEECCEEEEE-cC-----------CCeEEEE-ECCCCCEEEEecCC-------------------
Confidence 100 00122233335644444 32 24 5888 99999977544311
Q ss_pred ccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+.. ...+++..|+.++.|+.|..||
T Consensus 203 -----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 203 -----------------GIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp ------------------ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred -----------------CccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 2222 2568888999999999999987
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-07 Score=90.71 Aligned_cols=195 Identities=10% Similarity=0.112 Sum_probs=149.9
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEc-C
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI-E 173 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~-~ 173 (389)
..|..-||+ +|++.+|.+-....|-|+.....+ +.++|+ ...|..|.++| ..+|.++ +.|....+|.. .
T Consensus 11 ~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc---s~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC---SHDRNAYVWTQPS 86 (361)
T ss_pred Cceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc---cCCCCccccccCC
Confidence 345678997 899999999999999999875544 567776 45799999995 7788776 55688999998 5
Q ss_pred CCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----EEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 174 DGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 174 tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~----~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
.|+=-.+|. -+-.....|.++ |-..+++.+|.-+.|-+|-.+..+- .++-+.+...|.++.|.|++-+||.|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 555333332 344677899998 6688999999999999998865442 223345677899999999999999999
Q ss_pred -CCeEEEEe------------------CC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 248 -NRTVAVWN------------------FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 248 -D~tIklWd------------------~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
|+..|+.. +- |+++..+....+| |..|.|||+|..||=.+.| .+
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-----vh~v~fs~sG~~lawv~Hd-----------s~ 229 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-----VHGVLFSPSGNRLAWVGHD-----------ST 229 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-----eeeeEeCCCCCEeeEecCC-----------Cc
Confidence 99999985 22 5555555444455 7999999999999987654 78
Q ss_pred EEEEeCCCC
Q 016446 308 INVSSILTG 316 (389)
Q Consensus 308 IklWd~~tg 316 (389)
+.+=|....
T Consensus 230 v~~~da~~p 238 (361)
T KOG1523|consen 230 VSFVDAAGP 238 (361)
T ss_pred eEEeecCCC
Confidence 988885533
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-07 Score=95.76 Aligned_cols=256 Identities=9% Similarity=0.100 Sum_probs=171.9
Q ss_pred EEee--ccE-EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 9 IVAA--RDI-VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 9 i~~~--~~~-~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
|-.+ |++ +|++-+--.||+||+. .--|++=..-.++.|.=.-+|-|-..++. --.| +.|.+.. .-
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~----L~~D------R~IefHa-k~ 124 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVF----LQND------RTIEFHA-KY 124 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheE----eecC------ceeeehh-hc
Confidence 4445 554 6788899999999995 55565444334455555555544332222 2233 3332221 22
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCC
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSS 162 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s 162 (389)
|.- .+.++ -.+| +.++++.|.-.++.-|+.. .|.-.+|+.|+-|..+. ...++.|.+++ .+.||++ .
T Consensus 125 G~h-y~~RI---P~~G--RDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G---t 194 (703)
T KOG2321|consen 125 GRH-YRTRI---PKFG--RDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG---T 194 (703)
T ss_pred Cee-eeeec---CcCC--ccccccCCCccEEEeecCc-ceEEEEccccccccccccccccceeeeecCccceEEec---c
Confidence 321 11111 1122 3477777777666655554 45556999999888876 47899999996 6667654 4
Q ss_pred CCeeEEEEEcCCCeEEEEEeecC------C-----ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCc
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLL------H-----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT 230 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~------~-----~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~ 230 (389)
.++.|..||..+-....+|.... + .+.++.|. .+|=.++.|..+|.|-|+|+++.+++..- .+...+
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 46899999999877777775321 2 27888886 34567777889999999999998876652 334457
Q ss_pred eEEEEEcCC--CcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 231 PSAFIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 231 v~sv~fspd--g~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+..+.|.+. +..++|.....+||||-. |+....++.-.. ++.++|-|++-++..|-.
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~------lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD------LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC------cCceeeecCCceEEEecC
Confidence 888889765 556777767899999996 998888875433 689999999999998754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=81.10 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=157.9
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEE----------EEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~----------sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
.++.++.|.+.+.+|.+..+|.+||+.+=..+......+. +++. ++..|+. +..+ ..+
T Consensus 65 Pvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v----~~~~------g~l 132 (394)
T PRK11138 65 PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYI----GSEK------GQV 132 (394)
T ss_pred cEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEE----EcCC------CEE
Confidence 3556888999999999999999999988655433210000 1111 2344444 3344 455
Q ss_pred eEeEeccCCCCCcceeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-cE------EEEEEc
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HV------QEIKIS 150 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-~V------~~vafS 150 (389)
.-.|..+|+. +|.....+.+.+ -... ++++++ +..++.+.-.|+++|+.+...... .. .+-++.
T Consensus 133 ~ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 133 YALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred EEEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 5567788987 665333232222 1222 565554 667899999999999998776521 11 111222
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc-------eeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR-------NKKVDFIE-QFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~-------~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
++ .+..+. .++.+.-.|.++|+.+...+..... ...+...| ..++.+.+++.++.+...|+++|+.+-
T Consensus 205 ~~-~v~~~~---~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 205 FG-GAIVGG---DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred CC-EEEEEc---CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence 23 343432 3467888899999988765421110 01111111 136778888899999999999998765
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 223 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 223 ~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
...- .....++. .++++++...|+.+...|.. |+.+-....-.... ..+.++ -+|. |..++.
T Consensus 281 ~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-~~g~-l~v~~~-------- 343 (394)
T PRK11138 281 KREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-YNGY-LVVGDS-------- 343 (394)
T ss_pred eecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-ECCE-EEEEeC--------
Confidence 4321 11112222 34555554458999999986 87654332111110 112222 1444 455544
Q ss_pred CCCCCeEEEEeCCCCeEEEEecC
Q 016446 302 EGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~g 324 (389)
||.|...|..+|+.+...+-
T Consensus 344 ---~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 ---EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ---CCEEEEEECCCCCEEEEEEc
Confidence 59999999999999887754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-08 Score=98.03 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=113.5
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
|.-.-|..+.+..+.+|+..+. +.....++++++-+.... .-.......|+|+.... . ..-.++
T Consensus 50 ~~~~~~~~s~~~~~a~~~~~~s------~~~~llAv~~~~K~~~~f-~~~~~~~~~kl~~~~~v------~---~~~~ai 113 (390)
T KOG3914|consen 50 DKGEEAKASEILSLAPALVLTS------DSGRLVAVATSSKQRAVF-DYRENPKGAKLLDVSCV------P---KRPTAI 113 (390)
T ss_pred ccccchhhhhhhhccccccccC------CCceEEEEEeCCCceEEE-EEecCCCcceeeeEeec------c---cCccee
Confidence 3334444555556666664210 123455666664332111 11222234566654221 1 333566
Q ss_pred EEEecCCCeEEE--EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc-EEEEe-cc
Q 016446 192 DFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSF-ED 266 (389)
Q Consensus 192 ~f~~~~~~~l~~--~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~-~l~tl-~g 266 (389)
.|...+-..+++ +++...+.+|.+..|.++- +-||-..+..|+++||++.++++. |..||+=...+. -+.+| -|
T Consensus 114 ~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG 192 (390)
T KOG3914|consen 114 SFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG 192 (390)
T ss_pred eeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc
Confidence 665433333333 3688999999988755544 468999999999999999999998 999998776432 23332 38
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|... |..++.-|+ +.|+|||.| +|||+||+.+|+++.++.-
T Consensus 193 H~eF-----VS~isl~~~-~~LlS~sGD-----------~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 193 HKEF-----VSTISLTDN-YLLLSGSGD-----------KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cHhh-----eeeeeeccC-ceeeecCCC-----------CcEEEEecccCCcccccch
Confidence 9887 788887664 568998764 8999999999999977743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=90.20 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=178.2
Q ss_pred cCceEEE-EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeec
Q 016446 21 HSGVCAA-FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 99 (389)
Q Consensus 21 ~~gtikl-W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~ 99 (389)
.+..+.+ |+.+ .....+........+..+.+||.|.+|++ .+. ..|.+|+-..+.. |-. ..
T Consensus 9 ~s~~i~~f~~~~-s~~~~~~~~~~~~p~~~~~~SP~G~~l~~------~~~-----~~V~~~~g~~~~~-----l~~-~~ 70 (561)
T COG5354 9 YSAVISVFWNSQ-SEVIHTRFESENWPVAYVSESPLGTYLFS------EHA-----AGVECWGGPSKAK-----LVR-FR 70 (561)
T ss_pred ccceEEEeecCc-cccccccccccCcchhheeecCcchheeh------hhc-----cceEEccccchhh-----eee-ee
Confidence 3444444 6654 44555555545578999999999999988 222 4455555433221 111 12
Q ss_pred ccCceeEEEecCCCeEEEEecCC---------------CeEEEEeCCCCeEEEEecC--C--cEE-EEEEc-CCceEEEE
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKNYTMLYSISD--K--HVQ-EIKIS-PGIMLLIF 158 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D---------------~tiklWdl~~g~~l~tl~~--~--~V~-~vafS-~g~~la~~ 158 (389)
...+..+.|| |+|++|.+=+.. ..+.+||.++|..++++.. . -.| -+.|| ++.++|--
T Consensus 71 ~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 2346789998 999999987753 3599999999999998863 2 255 68899 66655433
Q ss_pred ecCCCCeeEEEEEcCCCeEE----EEEeecCCceeEEEEEec-CCCeEEE-----EeCCCcEEEEECCCCeEEEEcccCC
Q 016446 159 NRSSSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFIEQ-FNEKLLV-----KQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l----~tl~~~~~~~~~v~f~~~-~~~~l~~-----~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
. + ..+++.++ |+..- ++|+ ..++..-.++|- ++..|+. +..+++++||.+-.+..+.+-.=-.
T Consensus 150 v-~---~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 150 V-G---SSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred c-c---CeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 1 2 36888886 44322 2222 134455555532 1223333 3588999999998766655411111
Q ss_pred CceEEEEEcCCCcEEEEE------------cCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 229 MTPSAFIFLYENQLFLTF------------RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~------------sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
..=-.+-|.+.|++|..= +..++.|.++++.-+....+-.++ |.+.+|+|+++..+..+
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~---- 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVIS---- 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEe----
Confidence 111235567888876521 135677778775433333233444 78999999999887765
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
|-.+-++-+.|+. |+...-+.... =..+.|||.+++++
T Consensus 294 -----g~~pa~~s~~~lr-~Nl~~~~Pe~~------------------------------------rNT~~fsp~~r~il 331 (561)
T COG5354 294 -----GYMPASVSVFDLR-GNLRFYFPEQK------------------------------------RNTIFFSPHERYIL 331 (561)
T ss_pred -----cccccceeecccc-cceEEecCCcc------------------------------------cccccccCcccEEE
Confidence 2235789999976 67655554322 23467888888888
Q ss_pred EecCCC---cEEEcc
Q 016446 377 TGNRHG---LVHVWS 388 (389)
Q Consensus 377 Sgs~D~---tIrlW~ 388 (389)
.++.|+ .|-+|+
T Consensus 332 ~agF~nl~gni~i~~ 346 (561)
T COG5354 332 FAGFDNLQGNIEIFD 346 (561)
T ss_pred EecCCccccceEEec
Confidence 877764 455554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-06 Score=82.53 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=30.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
-|+|| ||+.+||.+...|+|+++|+ .|..++.++
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl-~g~~lf~I~ 81 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDL-MGSELFVIP 81 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEec-ccceeEEcC
Confidence 49998 99999999999999999998 567777775
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=116.09 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=138.7
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|--.+-++|++||.||+|.-..++.+..+. ...|..++|+ .|+...++ ..|+.+-+|.+. -+....-+-|..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 566788899999999999998888776664 3689999999 89998776 456899999975 355555555655
Q ss_pred ceeEEEEEecCCCeEEEEe---CCCcEEEEECC-C--CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C
Q 016446 187 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-N--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 258 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~-t--g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G 258 (389)
....+.|. +..+++++ .++.+-+||-- . ..++. ..|...++.+++-|.-|+|+||+ +|-|+|||+. .
T Consensus 2294 ~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeee---ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 66778887 34555543 88999999943 2 23455 68999999999999999999999 9999999996 7
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
++.++++. + . -..++++|+. .|+||||++.+=.+++++..
T Consensus 2369 ql~h~~~~---~-----------~-~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---L-----------D-TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---h-----------h-hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 77766643 1 1 3467777654 59999999988888888764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-06 Score=83.48 Aligned_cols=207 Identities=15% Similarity=0.141 Sum_probs=137.5
Q ss_pred eEEEecCCCeEEEEecCCCe-EEEEeCCCCeEEEEecC---CcEE-EEEEc-CCceEEEEecC--CCCeeEEEEEcC-CC
Q 016446 105 FVEFDDVNGKVLTYSAQDSI-YKVFDLKNYTMLYSISD---KHVQ-EIKIS-PGIMLLIFNRS--SSHVPLKILSIE-DG 175 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~t-iklWdl~~g~~l~tl~~---~~V~-~vafS-~g~~la~~~~~--s~d~tiklWd~~-tG 175 (389)
.++.+|..+..+|.+-.-|+ ..+||..+|+.+..+.. ..-+ --+|| ||++|.++..+ ...+-|-+||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 35555225555555554443 45899999998887752 1222 26799 78888876433 234799999998 66
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEE--e-----CCC-----------cEEEEECCCCeEEEE--c--ccCCCceEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVK--Q-----ENE-----------NLQILDVRNAELMEV--S--RTEFMTPSA 233 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~--s-----~D~-----------tIklWd~~tg~~~~~--l--~gh~~~v~s 233 (389)
+.+.++..|.-.=.++.+. ||++.|+++ + +.+ .+-+-|..+|++++. | .-|..+++=
T Consensus 89 ~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6777777544344788887 778777774 3 223 344568899999887 6 448889999
Q ss_pred EEEcCCCcEEEEEc-CC-------eEEEEeCCCcEEEEeccCcC--CcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 234 FIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 234 v~fspdg~~laS~s-D~-------tIklWd~~G~~l~tl~gh~~--~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+++.++|..+...- .+ -|-+++. |+.++.+..-.. .-...|+-||+|++||.++|..|.-
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr--------- 237 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR--------- 237 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---------
Confidence 99999998877663 22 2223332 332333332110 0111358999999999999877753
Q ss_pred CCCeEEEEeCCCCeEEEEec
Q 016446 304 SAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~ 323 (389)
-+.+-+||..+|+++....
T Consensus 238 -Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 -GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred -CCEEEEEECCCCCEeeccc
Confidence 4899999999999986654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=68.83 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=36.6
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
|++++++++|...|++++|+|++++|+|++ |++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 588999999999999999999999999999 99999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-05 Score=77.21 Aligned_cols=264 Identities=13% Similarity=0.177 Sum_probs=167.3
Q ss_pred eeeeEeEe--ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC---CCeEEEEeCC--CCeEEEE----ecCCcE
Q 016446 76 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLYS----ISDKHV 144 (389)
Q Consensus 76 ~~~~l~~i--~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~---D~tiklWdl~--~g~~l~t----l~~~~V 144 (389)
..|..|++ .+|++...+.+ +..+.|..++|+ |+++.|-++-. ++.|--+.+. +|++.+. +.+..=
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhhhc---cccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 67788887 56766433333 356677889997 89988877654 4666665554 4775422 234444
Q ss_pred EEEEEc-CCceEEEEecCCCCeeEEEEEcCC-CeEEEE--EeecCCc----------eeEEEEEecCCCeEEEEe-CCCc
Q 016446 145 QEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GTVLKV--FYHLLHR----------NKKVDFIEQFNEKLLVKQ-ENEN 209 (389)
Q Consensus 145 ~~vafS-~g~~la~~~~~s~d~tiklWd~~t-G~~l~t--l~~~~~~----------~~~v~f~~~~~~~l~~~s-~D~t 209 (389)
.-|+++ +|+.+.++.-.+ +.|.+.-+++ |.+... +..|.+. +..+.|. |++.++++.. .--.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~Dr 168 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTDR 168 (346)
T ss_pred eEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEEEeecCCce
Confidence 779999 788888876554 6888888755 544322 1123333 6677776 7777888765 3345
Q ss_pred EEEEECCCCeEEEEcc---cCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCCC--cEEEEeccCcC----CcCCCCeeE
Q 016446 210 LQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRG--ELVTSFEDHLL----WHPDCNTNN 278 (389)
Q Consensus 210 IklWd~~tg~~~~~l~---gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~G--~~l~tl~gh~~----~~~~~~v~s 278 (389)
|.++++..|.+...-. .-....+=++|+|+|++.-.-. ++||-+|..++ ..+..|+-+.. ..-......
T Consensus 169 i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 8899999887633211 2234577899999999887776 99999999863 23333332221 000011468
Q ss_pred EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 279 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 279 v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
|.+||||++|-.+-+- ...|-++.+.. |..+..+.-+. +.+
T Consensus 249 Ihis~dGrFLYasNRg----------~dsI~~f~V~~~~g~L~~~~~~~----------------------------teg 290 (346)
T COG2706 249 IHISPDGRFLYASNRG----------HDSIAVFSVDPDGGKLELVGITP----------------------------TEG 290 (346)
T ss_pred EEECCCCCEEEEecCC----------CCeEEEEEEcCCCCEEEEEEEec----------------------------cCC
Confidence 9999999999976542 24677776643 23343333222 111
Q ss_pred cccCCEEEEEECCCCCEEEEecCCC-cEEEc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHG-LVHVW 387 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~-tIrlW 387 (389)
..=....|+|.|+.|+.+.+|. .|.+.
T Consensus 291 ---~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 291 ---QFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ---cCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 2346789999999999999764 45443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.8e-08 Score=95.10 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=111.7
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCC-C---eEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN-Y---TMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g---~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
..+.++ |.|++||.+-.++..-+.++.. . +++.... ...-.++.|- .......+...+.++.+.+|.+..|.+
T Consensus 66 ~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 346775 8888888887777766666532 1 2232222 1122233333 334444455667788999999887666
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
+-.+ ||...+..|+++ ||++.|+++-.|+.||+=....--.++. +-||...|..++.-|+- .|+|++ |+|+++||
T Consensus 145 ~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred chhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 6555 688889999998 7889999999999999977654333333 46899999999876655 477777 99999999
Q ss_pred CC-CcEEEEec
Q 016446 256 FR-GELVTSFE 265 (389)
Q Consensus 256 ~~-G~~l~tl~ 265 (389)
.. |+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 96 99987775
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-06 Score=84.09 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=132.4
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|+..+|.++|..| .|.+-|-+...|--++..+...|+=..|. ++.-++.+..++ -.+-+.|..+|+.- .+....+
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg--D~l~iyd~~~~e~k-r~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG--DKLGIYDKDGGEVK-RIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC--ceEEEEecCCceEE-EeeCCcc
Confidence 7777899999887 46666777666666666666779999999 666676664443 27889998887654 4455568
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-----CCeEEEEeCC-CcE
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GEL 260 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-----D~tIklWd~~-G~~ 260 (389)
.+.+|..+ ++|.+++++-....|-+.|+.+|+....=+...+-|..++++|+++.+|-+- -+.|||+|+. |+.
T Consensus 403 ~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999998 7788888888889999999999998777677888999999999999999874 4689999998 465
Q ss_pred EE--EeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 261 VT--SFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 261 l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.. |-.+| -.+=||.|||++|-==
T Consensus 482 y~vTT~ta~--------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDVTTPTAY--------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEecCCccc--------ccCcccCCCCcEEEEE
Confidence 33 32233 2577899999987543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-08 Score=94.54 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=119.5
Q ss_pred EEecCCcEEEEEEc-C--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 137 YSISDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 137 ~tl~~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
.+|+...-|++|+| . |-.++ .+.+..|-|=|++||-- +.|. ...-|++..|. ..+..+..|+.+|.|-..
T Consensus 207 ~SlQi~~a~~CawSlni~gyhfs----~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~i 279 (425)
T KOG2695|consen 207 CSLQIPKAWSCAWSLNIMGYHFS----VGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVI 279 (425)
T ss_pred eeecCCcchhhhhhhccceeeec----ccccceeEEEEeecccc-cccc-cchhHHHHHhc-ccCCeeEecccCCcEEEE
Confidence 44544444555666 2 22221 24456788888888632 3333 23567888886 335566668899999999
Q ss_pred ECCCC-----eEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcE---EEEeccCcCCcCCCCeeEEEEC
Q 016446 214 DVRNA-----ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 214 d~~tg-----~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~---l~tl~gh~~~~~~~~v~sv~fS 282 (389)
|++.+ .|.+.+- |...|.++-... ++|.|.+++ +|+|||||.+ -+| +.+.+||.+.+. =.-+-+.
T Consensus 280 DLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a---~l~~~v~ 355 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA---YLPAHVK 355 (425)
T ss_pred EeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc---ccccccc
Confidence 99865 4555543 778888888777 888888888 9999999997 677 999999976431 1345567
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|....++|++.| -..|||.+..|+++.+++-..
T Consensus 356 ~eeg~I~s~GdD-----------cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 356 EEEGSIFSVGDD-----------CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccceEEEccCe-----------eEEEEEecccCceeeccCCCC
Confidence 788888887664 799999999999999987543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-06 Score=86.04 Aligned_cols=219 Identities=10% Similarity=0.094 Sum_probs=147.2
Q ss_pred ccEEEEEecCceEEEEe-cccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 13 RDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~-~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
.+.|.++++|.++|+|- ++.||.-..+..+....+.+..|+++-..|.. +-+. .++.-..+. -.+ .
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v----g~~n------gtvtefs~s-edf--n 102 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV----GQDN------GTVTEFALS-EDF--N 102 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE----EEec------ceEEEEEhh-hhh--h
Confidence 78899999999999997 77789888877766678899999998887766 3233 111111111 111 1
Q ss_pred ceeEee---ecccCceeEEEecCCCeEEEEecCCCeEEEEeC-CCCeEE--EEec---C---CcEEEEEEc-C--CceEE
Q 016446 92 FALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL-KNYTML--YSIS---D---KHVQEIKIS-P--GIMLL 156 (389)
Q Consensus 92 ~~l~~~---~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl-~~g~~l--~tl~---~---~~V~~vafS-~--g~~la 156 (389)
..+|-. .+.+.+..+-|+.| -..+.|.+.|+.+ .|.- +.|..+ +.+. . ..+. ++|= + |+..
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt- 178 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSGQIT- 178 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCC-ceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeE-EEEecccccceE-
Confidence 111211 23333456788854 5678888999887 6653 445543 2221 1 1222 5554 2 2221
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFI 235 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~ 235 (389)
.+|+-. +.=.++.++.+|.+.+....+- +.++.+.++..|..|-+||+--++- ...+.+|.+-|.++.
T Consensus 179 ---------~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 179 ---------MLKLEQ-NGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred ---------EEEEee-cCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 234443 4556788999999999999997 4466777788999999999965443 445789999999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
..+--+.|.|.. ||.|.+||.+-+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccce
Confidence 988888888888 999999998643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-08 Score=94.59 Aligned_cols=241 Identities=15% Similarity=0.212 Sum_probs=146.6
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEE----Eec--------------CCcEEEEEEc-CCc---eEEEEe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLY----SIS--------------DKHVQEIKIS-PGI---MLLIFN 159 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~----tl~--------------~~~V~~vafS-~g~---~la~~~ 159 (389)
+.+|.|. ..|.+||+|.-.|-|-++.-+... |-+ .++ .+.|.++..- |++ .|++
T Consensus 29 ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls-- 105 (460)
T COG5170 29 ITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS-- 105 (460)
T ss_pred eeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe--
Confidence 4579998 689999999988999999754322 322 122 1368888887 643 5554
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---------CCCcEEEEECCCCeEEEEcccCCCc
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---------ENENLQILDVRNAELMEVSRTEFMT 230 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---------~D~tIklWd~~tg~~~~~l~gh~~~ 230 (389)
..|+|||||.+.. +-|+... ..-.+=.|..|-++-+++.+ .|.-|-. ..|.---+.|.-.
T Consensus 106 --tNdktiKlWKiye-knlk~va---~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvyaNaH~yh 174 (460)
T COG5170 106 --TNDKTIKLWKIYE-KNLKVVA---ENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVYANAHPYH 174 (460)
T ss_pred --cCCceeeeeeeec-ccchhhh---ccccccccccccCCCcCCHHHhhcccccccceEEEe-----ccceeccccceeE
Confidence 4579999999875 3333221 11111112112222222211 2222221 1222223679999
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeCC--CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 231 PSAFIFLYENQLFLTFRNRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 231 v~sv~fspdg~~laS~sD~tIklWd~~--G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
+.++.|..|.+.++|+.|=.|.||+++ -.+ +...+.|.....-.+|++..|+|.-..+..+|.. .|
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS----------kG 244 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS----------KG 244 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC----------CC
Confidence 999999999999999999999999985 233 3445555431111237899999999888888754 59
Q ss_pred eEEEEeCCCCe-EEE--EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 307 SINVSSILTGK-CLA--KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 307 tIklWd~~tg~-~l~--tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
+|||=|+++.- |.. +|..-+- ++ .. .+..-+....|..+-|||+|++|+|-+ --|
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~----------D~----v~-------~~ff~eivsSISD~kFs~ngryIlsRd-ylt 302 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTI----------DG----VD-------VDFFEEIVSSISDFKFSDNGRYILSRD-YLT 302 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhcc----------Cc----cc-------chhHHHHhhhhcceEEcCCCcEEEEec-cce
Confidence 99999987322 221 1111110 00 00 001111125788899999999998865 478
Q ss_pred EEEccC
Q 016446 384 VHVWSN 389 (389)
Q Consensus 384 IrlW~~ 389 (389)
|+|||.
T Consensus 303 vkiwDv 308 (460)
T COG5170 303 VKIWDV 308 (460)
T ss_pred EEEEec
Confidence 999984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00015 Score=72.01 Aligned_cols=268 Identities=14% Similarity=0.140 Sum_probs=171.0
Q ss_pred CceEEEEeccc--ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCCcceeEee
Q 016446 22 SGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFES 97 (389)
Q Consensus 22 ~gtiklW~~~t--g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~~~~l~~~ 97 (389)
++-|..|++++ |+.-............=++|+|+++.|-++-..+. + ..|--..+ ..|++-+ +-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~------ggvaay~iD~~~G~Lt~---ln~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-E------GGVAAYRIDPDDGRLTF---LNRQ 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-c------CcEEEEEEcCCCCeEEE---eecc
Confidence 67889999873 43322222222355678999999999888765432 2 22222333 4476621 1111
Q ss_pred ecccC-ceeEEEecCCCeEEEEecC-CCeEEEEeCC-CCeEE---EEe-cCC----------cEEEEEEcC-CceEEEEe
Q 016446 98 ESLKW-PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK-NYTML---YSI-SDK----------HVQEIKISP-GIMLLIFN 159 (389)
Q Consensus 98 ~~~~~-~~~v~Fs~pdG~~Las~s~-D~tiklWdl~-~g~~l---~tl-~~~----------~V~~vafS~-g~~la~~~ 159 (389)
...+. +..|+++ ++|++|.++.. -+.|.+.-+. .|.+. ..+ +.. .+....|.| +++|++..
T Consensus 85 ~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 85 TLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred ccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 23333 4679998 89999999884 6889999885 47653 222 222 388999995 77887764
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEee---cCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCC--Ce--EEEEc---cc--
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN--AE--LMEVS---RT-- 226 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~---~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~t--g~--~~~~l---~g-- 226 (389)
-+ .| .|.++++..|++-..-+. -+..-+-++|+ |.+...-. .--++||-+|.... |+ ++|++ ..
T Consensus 164 LG-~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 164 LG-TD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred cC-Cc-eEEEEEcccCccccccccccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 33 33 577999998876643321 12333789998 54544444 45899999998876 44 34432 11
Q ss_pred -CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--CcEEEEecc---CcC-CcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 227 -EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFED---HLL-WHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 227 -h~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G~~l~tl~g---h~~-~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
...+.-+|..+|||++|-.+. ...|-++.++ |..|..++- |.. | +...|+|+|++|+.+..+
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~~g~~Liaa~q~--- 311 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINPSGRFLIAANQK--- 311 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCCCCCEEEEEccC---
Confidence 234677899999999998884 6688888874 444433321 111 2 688999999999999887
Q ss_pred ccccCCCCCeEEEEeC--CCCeEE
Q 016446 298 DQWMEGSAGSINVSSI--LTGKCL 319 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~--~tg~~l 319 (389)
..+|.++-+ +||++-
T Consensus 312 -------sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 312 -------SDNITVFERDKETGRLT 328 (346)
T ss_pred -------CCcEEEEEEcCCCceEE
Confidence 256888854 567653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-05 Score=78.26 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=140.8
Q ss_pred EEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe-----cC
Q 016446 48 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-----AQ 121 (389)
Q Consensus 48 ~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~-----s~ 121 (389)
..++.+|. +..++.+- . +.....++|..+|+.. +.+...+-...-+-..|| |||++|-+. +.
T Consensus 8 H~~a~~p~~~~avafaR----R-----PG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFAR----R-----PGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETG 75 (305)
T ss_pred cceeeCCCCCeEEEEEe----C-----CCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCC
Confidence 46788884 44333321 1 2356677888888863 222211100001238898 999998764 34
Q ss_pred CCeEEEEeCC-CCeEEEEecCCcE--EEEEEc-CCceEEEEecC---------------CCCeeEEEEEcCCCeEEEE--
Q 016446 122 DSIYKVFDLK-NYTMLYSISDKHV--QEIKIS-PGIMLLIFNRS---------------SSHVPLKILSIEDGTVLKV-- 180 (389)
Q Consensus 122 D~tiklWdl~-~g~~l~tl~~~~V--~~vafS-~g~~la~~~~~---------------s~d~tiklWd~~tG~~l~t-- 180 (389)
.|.|-|||+. +++.+..+..+.| .++.+. ||.+|+++..+ .++-.+-+-|..+|+++..
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 7899999998 7778888875433 567788 56688877533 1223556678899999976
Q ss_pred E--eecCCceeEEEEEecCCCeEEEE-eCCCc-----EEEEECCCCeEEEEcc-------cCCCceEEEEEcCCCcEEEE
Q 016446 181 F--YHLLHRNKKVDFIEQFNEKLLVK-QENEN-----LQILDVRNAELMEVSR-------TEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 181 l--~~~~~~~~~v~f~~~~~~~l~~~-s~D~t-----IklWd~~tg~~~~~l~-------gh~~~v~sv~fspdg~~laS 245 (389)
| ..|.-.++-++.. .+ +..+.+ ++.+. =-|.-.+.|+.++.+. .-...+-||+|+++|.++|.
T Consensus 156 Lp~~~~~lSiRHLa~~-~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVD-GD-GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cCccccccceeeEEec-CC-CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 5 3355567777775 33 444443 43222 1122222333333322 23468999999999998887
Q ss_pred Ec--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 246 FR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 246 ~s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.+ -+.+-+||.. |+++....=. | +..|+-.++| +++|.+
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~-----D--~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLP-----D--ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccC-----c--eeeeeecCCc-eEEeCC
Confidence 77 7899999996 9988654322 1 5788888888 888854
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=105.95 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=156.6
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCc-eEEEEecCCCCeeEEEEEcCCCeEEEEEee-cCCce
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRN 188 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~~-~~~~~ 188 (389)
|.++..+....+++.-=|..+-+..+..-+-+.|+.+.=+|-. .-++ ++.|+.||.|-...|+.+.++.. -...+
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Ylt---gs~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLT---GSQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEe---cCCCceEEEEeccCCCeEEEeeccCcchh
Confidence 4566677777777777777644333322223567666666633 3334 35678999999999998888872 22667
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE--c--CCeEEEEeC--CC--cE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF--R--NRTVAVWNF--RG--EL 260 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~--s--D~tIklWd~--~G--~~ 260 (389)
....|+ ..|.+..++-.||.+-+|.+. .+..-..+-|+.....++|-. .+++++ + ++.+-+||. .+ -|
T Consensus 2255 tr~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhc-ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 888888 458899999999999999985 555556677999999999987 667766 3 679999996 33 35
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+. +.|... +..+++-|..|.|+||++ +|-|+|||+...|++++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 55 667665 689999999999999876 49999999998888766653
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.. ..+++++|+..|.||||+.
T Consensus 2377 ---------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 ---------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ---------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4578999999999999973
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.3e-08 Score=101.56 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=136.5
Q ss_pred eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEE
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd 171 (389)
+.+...+..+.|.+.+-..||+++.|-.+..||+.+.. +++... ...-..|+++ ++..||++. + +-|++||
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh-g---~~i~vwd 186 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH-G---NDIFVWD 186 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc-C---CceEEEe
Confidence 44555556678875556689999999999999998665 677665 3556678999 677887542 2 5899999
Q ss_pred cCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CeEEEEcccCCCceEEEEEcCCCcEEEE---
Q 016446 172 IED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLT--- 245 (389)
Q Consensus 172 ~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--g~~~~~l~gh~~~v~sv~fspdg~~laS--- 245 (389)
+.- +..|.++++|...++.++|+..--..+++.+.|+|||.||-.. .+.-++ ..-...|+.-.|.|-|+-...
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccc
Confidence 875 5688999999888999999854456778889999999999763 233332 233456777777774442211
Q ss_pred --------Ec-CCeEEEEeC-C-CcEEEEeccCcCCcCCCCeeEEEECC----CC------CEEEEEecCCCcccccCCC
Q 016446 246 --------FR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS----DQ------DLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 246 --------~s-D~tIklWd~-~-G~~l~tl~gh~~~~~~~~v~sv~fSp----dG------~~laS~s~D~~~~~~~~s~ 304 (389)
-. ++.-+.|++ + -+.+.+|.||.+.| ...-+=. || =.|++=|.|
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V-----~eFlWR~r~e~~~d~d~rdfQLVTWSkD---------- 330 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV-----LEFLWRKRKECDGDYDSRDFQLVTWSKD---------- 330 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHH-----HHHhhhhcccccCCCCccceeEEEeecC----------
Confidence 11 445556776 4 46799999999753 2222211 11 147777765
Q ss_pred CCeEEEEeCC
Q 016446 305 AGSINVSSIL 314 (389)
Q Consensus 305 D~tIklWd~~ 314 (389)
.++|||-|.
T Consensus 331 -~~lrlWpI~ 339 (1081)
T KOG0309|consen 331 -QTLRLWPID 339 (1081)
T ss_pred -CceEeeecc
Confidence 899999874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-07 Score=98.30 Aligned_cols=170 Identities=11% Similarity=0.177 Sum_probs=122.9
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-------CeEEEEcccCCCceEEEEEcCCCcEEEEEcCC
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 249 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-------g~~~~~l~gh~~~v~sv~fspdg~~laS~sD~ 249 (389)
.|..|.||+..++.++.. .....++++|.|+|||||.++. ..|.-+...|..+|.++.|..|-++++|. |+
T Consensus 727 rL~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cC
Confidence 456778898999888875 2345778889999999998873 34788899999999999999999998643 89
Q ss_pred eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 250 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 250 tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
-|.+||.- |+++..++.-...-...+|..+- +-|..++..||.- ..|||+.|.+.++....++-....
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa----------eSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA----------ESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc----------hhhheeeecccccceeeEEeccCC
Confidence 99999985 98876444211100011233332 3356666666543 379999999998877777654310
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+ + -.-+.+++.-|.|+.||.|=..|+|.+-|
T Consensus 874 ---------~------------------P--na~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 874 ---------G------------------P--NALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ---------C------------------C--chheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 0 0 03688999999999999998888887644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00051 Score=64.83 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=118.5
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec-----CCcEEEEEEcC-CceEEEEecCCCC------eeEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKISP-GIMLLIFNRSSSH------VPLK 168 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~-----~~~V~~vafS~-g~~la~~~~~s~d------~tik 168 (389)
+..++|..++|+++++.. +.+.+.|+++++. +.... ....+++++.| |... .+...... +.|.
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly-~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLY-VTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EE-EEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEE-EEecCCCccccccccceE
Confidence 667888757888877654 3445559999874 34442 24689999995 5544 44333211 3466
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECC--CCeE-----EEEcccCCCceEEEEEcCCC
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAEL-----MEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~--tg~~-----~~~l~gh~~~v~sv~fspdg 240 (389)
.++.. |+......+ ...-+.++|+ |++..|... +..+.|.-+++. +++. ...+.+....+-.+++.++|
T Consensus 119 ~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 119 RIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred EECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 66755 665555543 4667899998 777777654 688999999985 3312 22233333458889999999
Q ss_pred cEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE-CCCCCEEEEE
Q 016446 241 QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 291 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f-SpdG~~laS~ 291 (389)
++.++.. .+.|...|.+|+++..++--... +.+++| -||.+.|...
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 9999886 89999999999998887644222 689999 5887777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-07 Score=86.53 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=154.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccce-----eeeeeecCCcc-----------eEEEEEEeeCCC---EEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDE-----------VIRSLFYNKNND---SLITV 62 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~-----~l~tl~~~~~~-----------~v~sv~~spdg~---~l~s~ 62 (389)
.+|..|.|. |.+||++...|.|-++.++.-+ .+-.+++|..+ .|+.|-+-.+++ .|++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls- 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS- 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe-
Confidence 356777777 8999999999999999986432 33346666433 377787777754 4555
Q ss_pred EEeecCCCcceeeeeeeEeEeccCCCC--CcceeEeeecccCceeEEEecCCCeEEEE--------ec-CCCeEEEEeCC
Q 016446 63 SVYASDNFSSLKCRSTKIEYIRRGKPD--SGFALFESESLKWPGFVEFDDVNGKVLTY--------SA-QDSIYKVFDLK 131 (389)
Q Consensus 63 s~~~~~d~~~l~~~~~~l~~i~~g~~~--~~~~l~~~~~~~~~~~v~Fs~pdG~~Las--------~s-~D~tiklWdl~ 131 (389)
+.| ++++||-+....+- ....|- .++.| |-|--|.| .+ .|..| -+.
T Consensus 106 ----tNd------ktiKlWKiyeknlk~va~nnls--------~~~~~--~~~g~~~s~~~l~lprls~hd~ii---aa~ 162 (460)
T COG5170 106 ----TND------KTIKLWKIYEKNLKVVAENNLS--------DSFHS--PMGGPLTSTKELLLPRLSEHDEII---AAK 162 (460)
T ss_pred ----cCC------ceeeeeeeecccchhhhccccc--------ccccc--ccCCCcCCHHHhhcccccccceEE---Eec
Confidence 467 67777776444320 000010 01111 11100110 01 12222 111
Q ss_pred CCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-eEEEEE--e-----ecCCceeEEEEEecCCCeEE
Q 016446 132 NYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVF--Y-----HLLHRNKKVDFIEQFNEKLL 202 (389)
Q Consensus 132 ~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl--~-----~~~~~~~~v~f~~~~~~~l~ 202 (389)
..+.-...|...+.++.|. |.++++++ .|-.|-||+++-- .+.... + ..+.-+.+..|+|.---.+.
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 1111123455678999999 77777653 4578899987521 122111 1 11122456667643233444
Q ss_pred EEeCCCcEEEEECCCCe-EE---E------------EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC--CcEEEEe
Q 016446 203 VKQENENLQILDVRNAE-LM---E------------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSF 264 (389)
Q Consensus 203 ~~s~D~tIklWd~~tg~-~~---~------------~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~--G~~l~tl 264 (389)
-++.-|+|||-|++... |. + .+++-...|..+-|+|+|+++++-.=-||||||++ ..+++|.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee
Confidence 57789999999998432 21 1 12333456888999999999998778899999996 6788888
Q ss_pred ccCcC--------CcCCC--CeeEEEECCCCCEEEEEecC
Q 016446 265 EDHLL--------WHPDC--NTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 265 ~gh~~--------~~~~~--~v~sv~fSpdG~~laS~s~D 294 (389)
.=|.. ...++ .-..+.||-|.+-+.|||-.
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 65532 11111 01468899999999998764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-07 Score=98.22 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=124.6
Q ss_pred EEecCCcEEEEE-EcCCceEEEEecCCCCeeEEEEEcC-------CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCC
Q 016446 137 YSISDKHVQEIK-ISPGIMLLIFNRSSSHVPLKILSIE-------DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 208 (389)
Q Consensus 137 ~tl~~~~V~~va-fS~g~~la~~~~~s~d~tiklWd~~-------tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~ 208 (389)
++.|++.|++++ +++..-++++ +.|+|||||.++ |..|..|++.|..++.++-|.+ + .--+.|-|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSA---SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~--lr~i~ScD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISA---SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-D--LRSIASCDG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeec---cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-c--cceeeeccC
Confidence 344567788865 4444444344 567999999986 3458888889999999999984 2 223456799
Q ss_pred cEEEEECCCCeEEEEccc--CCCceEEEEEcC--CCcEEEEE-c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEE
Q 016446 209 NLQILDVRNAELMEVSRT--EFMTPSAFIFLY--ENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~g--h~~~v~sv~fsp--dg~~laS~-s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~f 281 (389)
-|.+||.--|+++..... ....+.-|.-.| |..+++.+ + ..|||+.|.+ ++....++--..+-|+..++.++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999988887664321 122334444433 56667666 5 8999999997 887777775544445556899999
Q ss_pred CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 282 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 282 SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
-|.|+.||.+= +.|+|-+-|.++|+.+...+.-+
T Consensus 885 a~~GN~lAa~L-----------SnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 885 ADKGNKLAAAL-----------SNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ccCcchhhHHh-----------cCCcEEEEecCCCceeccCCccc
Confidence 99999999864 34999999999999988776654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00011 Score=82.69 Aligned_cols=340 Identities=11% Similarity=0.078 Sum_probs=178.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEE----ecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAF----SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW----~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+|..+-+. .+.+..+..+|-|-+. +.. ..-...-|.-...|.+.+||||+++||.+. +...+=.| +
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~m---t 148 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLM---T 148 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEE---e
Confidence 456666666 5667778888988888 553 222234444456899999999999998854 21111111 0
Q ss_pred eeEeEeccCCCCCcceeEee---ecccC-ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CC
Q 016446 78 TKIEYIRRGKPDSGFALFES---ESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PG 152 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~---~~~~~-~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g 152 (389)
+=|++..-... ....|+. -..|| -..--|.-.-||..|-.-.|-++. .+..|.. + ..+.-..|.+- ||
T Consensus 149 -~~fd~i~E~~l-~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 149 -RDFDPISEVPL-DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWRGDG 221 (928)
T ss_pred -ccceEEEEeec-CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEECCCC
Confidence 11221100000 0000110 01111 001233212233222111122221 1111111 1 12222355566 89
Q ss_pred ceEEEEecCCC---CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCeEEE----
Q 016446 153 IMLLIFNRSSS---HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELME---- 222 (389)
Q Consensus 153 ~~la~~~~~s~---d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg~~~~---- 222 (389)
+++|+++-+.. -+.||+|+- .|++..+-+--.+--..++|- |.|..||+.+ ....|-.+.- +|....
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l 298 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTL 298 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEec
Confidence 99988875222 479999994 588777665222223567775 6777777776 3567777764 343322
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC---CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcc
Q 016446 223 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPED 298 (389)
Q Consensus 223 ~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~---G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~ 298 (389)
.+......|..+.|++|+.+||---...|+||... .-+.+.+.-.... .+..+.|+| +...|...+..
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~~---- 370 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTSN---- 370 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEecC----
Confidence 23355678999999999999998764459999874 3356666533321 134588888 34445555432
Q ss_pred cccCCCCCeEEEEe----CCCCe--------EEEEecCCCCC--CCcccccCCCCCCCccccccccceecccccccCCEE
Q 016446 299 QWMEGSAGSINVSS----ILTGK--------CLAKINATNCS--PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 364 (389)
Q Consensus 299 ~~~~s~D~tIklWd----~~tg~--------~l~tl~gH~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 364 (389)
|.+...+ +..+. .+..+.|.... |+-...+|+- |... .-.-...|.
T Consensus 371 -------g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP----------Ms~~---~l~~~~~v~ 430 (928)
T PF04762_consen 371 -------GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP----------MSSY---ELELPSPVN 430 (928)
T ss_pred -------CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch----------Hhce---EEcCCCCcE
Confidence 3333322 22111 12222222100 1111111111 1000 001115899
Q ss_pred EEEECCCCCEEEEecCCCcEEEcc
Q 016446 365 SLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 365 svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.|+|+|++..+|.-..||+|.+|.
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEE
Confidence 999999999999999999999986
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-07 Score=96.81 Aligned_cols=264 Identities=13% Similarity=0.165 Sum_probs=163.7
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEecC---CcEEEEEEcC----CceEEEEecCCCCeeEEEEEcC
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD---KHVQEIKISP----GIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~~---~~V~~vafS~----g~~la~~~~~s~d~tiklWd~~ 173 (389)
+..++..+ |-|+-+|.++.-|-+ +=|+. .+.+-+-|+. =.|..+.+|| ...+++. +...+ -+|++.
T Consensus 26 ~~~a~si~-p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst---s~qka-iiwnlA 99 (1081)
T KOG0309|consen 26 GFNAVSIN-PSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST---SNQKA-IIWNLA 99 (1081)
T ss_pred cccceeec-cccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec---Ccchh-hhhhhh
Confidence 34568886 889999988877665 45654 4554444442 3577788883 5566544 22234 488876
Q ss_pred C---CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEEEEcC-CCcEEEEEcC
Q 016446 174 D---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLY-ENQLFLTFRN 248 (389)
Q Consensus 174 t---G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~fsp-dg~~laS~sD 248 (389)
- ....-.|-+|+..+..+.|.++.++.+++.+.|-.+.+||+++-. .+-...--...-..|++++ ++..+|+.-.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 3 334455668888899999998888999999999999999998744 3333322222345588886 6666666658
Q ss_pred CeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCC--eEEEEec
Q 016446 249 RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKIN 323 (389)
Q Consensus 249 ~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg--~~l~tl~ 323 (389)
+-|.+||.+ +..+.++++|... |++++|..-- ..|.+. ++|+|||.||-... +.-++..
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~-----vn~~~fnr~~~s~~~s~-----------~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSS-----VNSIDFNRFKYSEIMSS-----------SNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred CceEEEeccCCCcceEEeccccee-----eehHHHhhhhhhhhccc-----------CCCCceeeecccccccccceecc
Confidence 899999996 6789999999875 7888886532 223333 45799999996421 1111111
Q ss_pred -------CCCCCCCcc--ccc-CCCC-------CCCcccccc---ccceecccccccCCEEEE--------EECCCCC--
Q 016446 324 -------ATNCSPKVD--DEL-GSSS-------TGKSKKLNK---SSYIRSTVGEALEDITSL--------FYDEERN-- 373 (389)
Q Consensus 324 -------gH~~~~~~~--~~~-~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~V~sv--------afSpdg~-- 373 (389)
|-.. |++. .+- ..|+ -...+++|| ...-..+..||++.|-.. .|..|.+
T Consensus 244 t~~piw~~r~~-Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 244 TNFPIWRGRYL-PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred ccCcceecccc-ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccce
Confidence 1100 1111 000 0111 011233443 244455566666655432 2333333
Q ss_pred EEEEecCCCcEEEcc
Q 016446 374 EIYTGNRHGLVHVWS 388 (389)
Q Consensus 374 ~LaSgs~D~tIrlW~ 388 (389)
.|+|=|.|.++|||.
T Consensus 323 QLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWP 337 (1081)
T ss_pred eEEEeecCCceEeee
Confidence 699999999999995
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=74.26 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=136.2
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEE-EEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~s-v~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
++..++.|..++.+|.+..+|.+||+.+=..+... .+.+ .... ++ +|+. +..+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v~-~~-~v~v----~~~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVVS-DG-LVLV----HTSN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEEE-CC-EEEE----ECCC------CEEEEEEccCCC
Confidence 45557888889999999999999999887665532 2222 1221 33 3443 2234 455556778888
Q ss_pred CCCcceeEeeecccCc------eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC------Cc---EEEEEEcC-
Q 016446 88 PDSGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KH---VQEIKISP- 151 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~------~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~------~~---V~~vafS~- 151 (389)
. +|........ .+-... +|. +..++.++.+...|+++|+.+....- .. ...+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 6 6653321100 111121 344 44466788898899999987655421 01 11111223
Q ss_pred --CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC
Q 016446 152 --GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 229 (389)
Q Consensus 152 --g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~ 229 (389)
++.+..++ .++.+.-.|+.+|+.+-+.+. .....+. ..++.+...+.|+.+...|.++|+.+-....-..
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 45555543 246899999999998876542 2212222 2478888889999999999999987643221111
Q ss_pred c-eEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec
Q 016446 230 T-PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 230 ~-v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~ 265 (389)
. ..+.+. .+|.+++...||.+...|.. |+.+...+
T Consensus 326 ~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 326 RLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 1 111111 26666655459999999996 99887665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00034 Score=78.81 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=154.8
Q ss_pred ccEEEEEec------CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 13 RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 13 ~~~~a~~~~------~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
|+++|+.+- -+.+|+|+++ |++-.+-..- ...-.+++|.|.|+.||++-. .+++ +.|-++. +.|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v-~gLe~~l~WrPsG~lIA~~q~-~~~~------~~VvFfE-rNG 290 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV-DGLEGALSWRPSGNLIASSQR-LPDR------HDVVFFE-RNG 290 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC-CCccCCccCCCCCCEEEEEEE-cCCC------cEEEEEe-cCC
Confidence 899999885 3699999997 9877765533 356679999999999999765 3344 5555554 444
Q ss_pred CCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec---CCcEEEEEEcC--CceEEEEe
Q 016446 87 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKHVQEIKISP--GIMLLIFN 159 (389)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~---~~~V~~vafS~--g~~la~~~ 159 (389)
-......|.-...-..+..++|+ +|+.+||---.|. |+||-..++. +-+.+. ...+..+.|+| ..+|....
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 32111111100112234679998 8999999876555 9999988887 334444 23455588884 33444332
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEE---ecCCCeEEEEeCCCcEEEEECCCCe-----EEEEcccCCCce
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI---EQFNEKLLVKQENENLQILDVRNAE-----LMEVSRTEFMTP 231 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~---~~~~~~l~~~s~D~tIklWd~~tg~-----~~~~l~gh~~~v 231 (389)
..+ .+...+ ..+.+..+ +|++.-+++-=...+++|=.++... +...+. -...|
T Consensus 369 ~~g---~~~~~~---------------~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v 429 (928)
T PF04762_consen 369 SNG---QYEIYD---------------FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPV 429 (928)
T ss_pred cCC---cEEEEE---------------EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCc
Confidence 211 111111 11223322 1112223333355677877776654 122222 23579
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--------EEEEeccC-----cCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~--------~l~tl~gh-----~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
..|+|++++..+|.-. ||+|.+|... .. +...+..+ ........+..++|..+..+++..+.+
T Consensus 430 ~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 507 (928)
T PF04762_consen 430 NDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD-- 507 (928)
T ss_pred EEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC--
Confidence 9999999998777776 9999999953 21 11122111 011111236788888888877776542
Q ss_pred cccccCCCCCeEEEEeCC
Q 016446 297 EDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~ 314 (389)
.+-..|.++++.
T Consensus 508 ------~~~~~i~~~~~~ 519 (928)
T PF04762_consen 508 ------SNQSKIVLVDID 519 (928)
T ss_pred ------cccceEEEEEec
Confidence 123678888874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=77.00 Aligned_cols=164 Identities=10% Similarity=0.068 Sum_probs=112.0
Q ss_pred CCe-EEEEecCCCeEEEEeCCCCeEEEEec---C---C--cEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEE--
Q 016446 112 NGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---D---K--HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK-- 179 (389)
Q Consensus 112 dG~-~Las~s~D~tiklWdl~~g~~l~tl~---~---~--~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~-- 179 (389)
+|. .|+=+-.+|.|.+.....-+....|. . . .-.++.|++ +..++++.+. +.+..=+...+.+.+
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~---G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSR---GSISGVYETEMVLEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCC---CcEEEEecceeeeeecc
Confidence 444 45556667788887753333223332 1 1 134567774 6666655333 444433433344444
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEE-cccCCCceEEEEEc-CCCcEEEEEc-CCeEEEEe
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~-l~gh~~~v~sv~fs-pdg~~laS~s-D~tIklWd 255 (389)
+.+.|.-..|...|+..+++.+.+|++|+.+..||++ .++++-. -+-|...|-++--| |.+.++++|+ |-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 6777888889999987778888889999999999999 5666655 56788999998776 5788999999 99999999
Q ss_pred CC--CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 256 FR--GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 256 ~~--G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+ |+.+..-. .. +.||.+.-+|-
T Consensus 240 tRnm~kPl~~~~--v~----GGVWRi~~~p~ 264 (339)
T KOG0280|consen 240 TRNMGKPLFKAK--VG----GGVWRIKHHPE 264 (339)
T ss_pred hhcccCccccCc--cc----cceEEEEecch
Confidence 95 88764222 11 23899999994
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00018 Score=72.21 Aligned_cols=253 Identities=12% Similarity=0.097 Sum_probs=150.9
Q ss_pred cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeE
Q 016446 21 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALF 95 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~ 95 (389)
..+..-++|+++++.-.-... ...+....|||||+.||.+. + +.+.++++..++.. ....++
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-----~------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-----D------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-----T------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-----c------CceEEEECCCCCeEEeccccceeEE
Confidence 456788999987665543332 35788899999999999863 3 56666665555331 000011
Q ss_pred e--------eecccCceeEEEecCCCeEEEEecCCC------------------------------------eEEEEeCC
Q 016446 96 E--------SESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------IYKVFDLK 131 (389)
Q Consensus 96 ~--------~~~~~~~~~v~Fs~pdG~~Las~s~D~------------------------------------tiklWdl~ 131 (389)
. .|.+....++-|| |||+.||....|. .+.|+|++
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 1 1124445568998 9999999875422 34457777
Q ss_pred CCeEE-EEec------CCcEEEEEEc-CCceE--EEEecCCCCeeEEEEEcCCCeEEEEEeec-CCce---eEEEEEecC
Q 016446 132 NYTML-YSIS------DKHVQEIKIS-PGIML--LIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRN---KKVDFIEQF 197 (389)
Q Consensus 132 ~g~~l-~tl~------~~~V~~vafS-~g~~l--a~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~~---~~v~f~~~~ 197 (389)
+++.. .... ...+..+.++ ++..| ...+.......+.+.|+.+|++-..+... .+.+ ....|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 77632 1211 2468889998 56623 33445555567788899998876655532 2333 355555244
Q ss_pred CCeEEE-EeCCCcEEEE--ECCCCeEEEEcccCCCceEE-EEEcCCCcEEE-EEc-C--CeEEEEeC--C-CcEEEEecc
Q 016446 198 NEKLLV-KQENENLQIL--DVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFED 266 (389)
Q Consensus 198 ~~~l~~-~s~D~tIklW--d~~tg~~~~~l~gh~~~v~s-v~fspdg~~la-S~s-D--~tIklWd~--~-G~~l~tl~g 266 (389)
+..++- ...||--+|+ +..++... .+......|.. +.+.++++.|. ++. + ..-.||-+ + +.-++.|+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 544444 5577666655 56556544 55656667755 67788877554 443 2 35667765 5 567777886
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
....+ .++.|||||++++-.+.
T Consensus 326 ~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred CCCCc-----eEEEECCCCCEEEEEEc
Confidence 65542 49999999999997664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.2e-05 Score=77.35 Aligned_cols=262 Identities=11% Similarity=0.134 Sum_probs=152.5
Q ss_pred cEEEEEee--ccEEEEEe-----------cCceEEEEecccceeeeeeec--CCcceEEEEE-EeeCCCEEEEEEEeecC
Q 016446 5 KVIEIVAA--RDIVFALA-----------HSGVCAAFSRETNRRICFLNV--SPDEVIRSLF-YNKNNDSLITVSVYASD 68 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~-----------~~gtiklW~~~tg~~l~tl~~--~~~~~v~sv~-~spdg~~l~s~s~~~~~ 68 (389)
.|+-|-|| ..+|++=+ +.+.|.+||+.||.+++++.- .. -.+|.+| ||.|++++|-.- .
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm~----~ 325 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARMT----G 325 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEec----c
Confidence 46667777 66676644 447899999999999998876 43 5677665 899999887732 1
Q ss_pred CCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEEEecCCc
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDKH 143 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~tl~~~~ 143 (389)
.+|.+....=..+..++. + ....|...+|| |.+++||.=.. --++-|=.+.+++.+++-.=..
T Consensus 326 --~sisIyEtpsf~lld~Ks-----l----ki~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 326 --NSISIYETPSFMLLDKKS-----L----KISGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred --ceEEEEecCceeeecccc-----c----CCccccCcccC-CCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 223333222222233332 1 11234557887 78888885432 1133334444444443332234
Q ss_pred EEEEEEc---CCceEEEEec-------CCCCeeEEEEEcCCCe-EEEEEeecCCceeEEEEEecCCCeEEEEe---CCCc
Q 016446 144 VQEIKIS---PGIMLLIFNR-------SSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENEN 209 (389)
Q Consensus 144 V~~vafS---~g~~la~~~~-------~s~d~tiklWd~~tG~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~t 209 (389)
|..+... .|.+|+.--. .+.-..+.|..+..-+ .+..++ ....+..-++- |.|+++++-+ .-.|
T Consensus 394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWE-P~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWE-PHGDKFAVISGNTVKNT 471 (698)
T ss_pred eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeec-cCCCeEEEEEccccccc
Confidence 5556555 3666653210 0000112223222111 011111 11344555564 7788887743 4589
Q ss_pred EEEEECCC-C---eEEEEcccCCCceEEEEEcCCCcEEEEE---c-CCeEEEEeCC-CcEEEEe-ccCcCCcCCCCeeEE
Q 016446 210 LQILDVRN-A---ELMEVSRTEFMTPSAFIFLYENQLFLTF---R-NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNI 279 (389)
Q Consensus 210 IklWd~~t-g---~~~~~l~gh~~~v~sv~fspdg~~laS~---s-D~tIklWd~~-G~~l~tl-~gh~~~~~~~~v~sv 279 (389)
++.|-+++ . ++++.|.. ..-+.|-|+|.|+.++.+ | .|.+...|.+ .++..+- ..|-. -+.+
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~------at~v 543 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA------ATEV 543 (698)
T ss_pred eeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc------cccc
Confidence 99999884 2 23444443 456788899999998877 4 7899999997 5554432 23443 3789
Q ss_pred EECCCCCEEEEEec
Q 016446 280 YITSDQDLIISYCK 293 (389)
Q Consensus 280 ~fSpdG~~laS~s~ 293 (389)
.+.|.|+|.+++|.
T Consensus 544 eWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSS 557 (698)
T ss_pred eECCCCCEEEEeee
Confidence 99999999999874
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=85.76 Aligned_cols=160 Identities=8% Similarity=0.102 Sum_probs=116.6
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-----CeEEEEEeecCCceeE
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-----GTVLKVFYHLLHRNKK 190 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t-----G~~l~tl~~~~~~~~~ 190 (389)
++.+.+..|-|=|+++|-...-.....|.+..|. -+..+..+... +.|-.-|++. |.|-+.|. |...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRn---geI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRN---GEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccC---CcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 5667788888999888764333345789999998 46777666544 5788888875 45666665 6677888
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeE---EEEcccCCCceEEE--EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAF--IFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~tg~~---~~~l~gh~~~v~sv--~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
+.....++++|++++.+++|+|||++--+| +++.+||-..-.-+ ...|....+++++ |--.|||.++ |.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 877744688999999999999999998777 99999996543333 3345566666777 9999999997 999999
Q ss_pred eccCcCCcCCCCeeEEEE
Q 016446 264 FEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~f 281 (389)
+.-..... ...+++|+|
T Consensus 384 ipf~~s~~-e~d~~sv~~ 400 (425)
T KOG2695|consen 384 IPFPYSAS-EVDIPSVAF 400 (425)
T ss_pred cCCCCccc-cccccceeh
Confidence 87544322 112466666
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0022 Score=65.18 Aligned_cols=249 Identities=16% Similarity=0.124 Sum_probs=146.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC--
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-- 123 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~-- 123 (389)
.+....+||||+.||.+...++.+ ...+++.|+.+|+.... .+. . ....+++|. +||+.+.....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e-----~~~l~v~Dl~tg~~l~d--~i~--~-~~~~~~~W~-~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSE-----WYTLRVFDLETGKFLPD--GIE--N-PKFSSVSWS-DDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSS-----EEEEEEEETTTTEEEEE--EEE--E-EESEEEEEC-TTSSEEEEEECSTTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCc-----eEEEEEEECCCCcCcCC--ccc--c-cccceEEEe-CCCCEEEEEEeCccc
Confidence 344678999999999876666666 36788899999976211 111 0 111238998 8999887776444
Q ss_pred ---------eEEEEeCCCCe----EEEEecCC-c-EEEEEEc-CCceEEEEecCCCC-eeEEEEEcCCC----eEEEEEe
Q 016446 124 ---------IYKVFDLKNYT----MLYSISDK-H-VQEIKIS-PGIMLLIFNRSSSH-VPLKILSIEDG----TVLKVFY 182 (389)
Q Consensus 124 ---------tiklWdl~~g~----~l~tl~~~-~-V~~vafS-~g~~la~~~~~s~d-~tiklWd~~tG----~~l~tl~ 182 (389)
.|++|.+.++. +++.-... . ...+..| ++++|...+..+.+ ..+.+-++.++ ...+.+.
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 48888887664 34444432 3 6788999 89998877777777 78899998875 2333333
Q ss_pred ecCCce-eEEEEEecCCCeEEEEe----CCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCC-cEEEEEc-CC--e
Q 016446 183 HLLHRN-KKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR--T 250 (389)
Q Consensus 183 ~~~~~~-~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg-~~laS~s-D~--t 250 (389)
.....+ ..+... ++.+..-+ .++.|---++.+... ...+-.|...+.-..+...+ .++++-. ++ .
T Consensus 274 ~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 274 PREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp ESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 222222 333332 55554432 456666667776652 33555666543333334444 4455555 55 7
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
|+++++. +.....+.--.. +.|..+...+++..+.-...+ --.-.+|.-+|+.+|+..
T Consensus 351 l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss-------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 351 LRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSS-------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEE-------TTEEEEEEEEETTTTCEE
T ss_pred EEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeC-------CCCCCEEEEEECCCCCEE
Confidence 8899998 877666553222 125666666666554432211 123478999999998863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00014 Score=77.56 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=115.7
Q ss_pred EEEecCCCeEEE-EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 106 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 106 v~Fs~pdG~~La-s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
+=++ |||+.|- +.-..+.+-+.|.++-+...++. +..-.-++++ +|.++.+++.++ +.|..+..+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs----------E~G~tl~em~ 266 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS----------EEGVTLAEMM 266 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCc----------ccCcceeeec
Confidence 4453 7887663 33457788888988877766665 4555778999 688887764322 3344444442
Q ss_pred ecCCceeEEEEEe-------cCCCeEEEEeCCCcEEEEECCC----C-eEEEEcccCCCceEEEEEcCCCcEEEEEc--C
Q 016446 183 HLLHRNKKVDFIE-------QFNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--N 248 (389)
Q Consensus 183 ~~~~~~~~v~f~~-------~~~~~l~~~s~D~tIklWd~~t----g-~~~~~l~gh~~~v~sv~fspdg~~laS~s--D 248 (389)
-. ..-..+.|.. +++.+... .+++|.+.|.++ + +.+..+. =...++.|++||||+++..++ +
T Consensus 267 a~-e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 267 AA-ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cc-cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 10 1124444432 23444333 478999999998 4 4444332 334678899999999988886 9
Q ss_pred CeEEEEeCC-Cc------------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 249 RTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 249 ~tIklWd~~-G~------------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.+|-+-|++ -+ .+.+.+--..+ .-.+|.++|....|-.-| ..|-.||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~d-----------sqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFLD-----------SQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEeec-----------ceeEEEehHH
Confidence 999999986 33 23333322233 478999999988777665 5777899876
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-07 Score=98.19 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=132.3
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKV 180 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~t 180 (389)
.++|| .+-+.|+-|+..|.||++++.+|... ...|+..|.-|--| +|.+++++++.|. --..||++. +|...++
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-PLSALWDASSTGGPRHS 1183 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC-chHHHhccccccCcccc
Confidence 58998 78889999999999999999999976 44567889999999 8888877754442 245799975 4555566
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-ccc---CCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRT---EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~g---h~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
|. ....|.|+.. -+.-+.|..-....|||++|+..+++ |.+ .+-.-+.+.|||+.+++. .||- |||+
T Consensus 1184 f~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDv 1254 (1516)
T KOG1832|consen 1184 FD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDV 1254 (1516)
T ss_pred cc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeee
Confidence 54 3467888732 33344455557788999999998887 433 222235578899888774 3553 7998
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
. .+-++.|.--... -.=.|+|.|.-++--|+ |||+.|=+++++...
T Consensus 1255 R~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 7 5555555432211 23358999999998653 899998877766543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=81.36 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=168.0
Q ss_pred CccccEEEEEee-ccEEEEEecCceEEEEecc--cc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC-CCcceee
Q 016446 1 MKRTKVIEIVAA-RDIVFALAHSGVCAAFSRE--TN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFSSLKC 75 (389)
Q Consensus 1 ~~~~~v~~i~~~-~~~~a~~~~~gtiklW~~~--tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~-d~~~l~~ 75 (389)
|-|--|.-++.. -+++.++|.||.+|.|... .| +.+.-+.. |...|-+++.|-||.+.+|+ .+ |
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~L~~Sv----~d~D------ 75 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGWLFRSV----EDPD------ 75 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccceeEeec----cCcc------
Confidence 557778888877 9999999999999999963 12 23333333 34688999999999999884 35 7
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC----eEEEEecCCCeEEEEeCCCCeE-E---EEecCCcEEEE
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM-L---YSISDKHVQEI 147 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG----~~Las~s~D~tiklWdl~~g~~-l---~tl~~~~V~~v 147 (389)
+.++++|+..=...+..+|- . -|.++.+...-| .+-++.-.++.|-+.|-....| . ..+|-..|..+
T Consensus 76 hs~KvfDvEn~DminmiKL~---~--lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLV---D--LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cceeEEEeeccchhhhcccc---c--CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence 88888888654443233321 1 233443322224 3334455688899998643332 2 23345788888
Q ss_pred EEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 148 KISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 148 afS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
.+++ +....+. ...+.|+-|..+ | ..+..+ ..+. |.+++-+-+--+..
T Consensus 151 ~y~qa~Ds~vSi---D~~gmVEyWs~e-~-~~qfPr------~~l~--------------------~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 151 RYNQAGDSAVSI---DISGMVEYWSAE-G-PFQFPR------TNLN--------------------FELKHETDLYGFPK 199 (558)
T ss_pred Eeeccccceeec---cccceeEeecCC-C-cccCcc------cccc--------------------ccccccchhhcccc
Confidence 8885 5554333 223688999854 2 121111 1122 22333222222233
Q ss_pred CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec--------------------------------cCcCCcC
Q 016446 227 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHLLWHP 272 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~--------------------------------gh~~~~~ 272 (389)
-...+.++.|+|+|..+++-+ |.+|++.++. |++++.++ -|....
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~- 278 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV- 278 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc-
Confidence 445678899999999999998 9999999986 77665443 232221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
-..+.|...|++|+=|+. =-||+-++.|+++.+.|--
T Consensus 279 ---~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 279 ---GTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILGK 315 (558)
T ss_pred ---cceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEecc
Confidence 256778899999997765 3599999999999998843
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=75.61 Aligned_cols=193 Identities=11% Similarity=-0.028 Sum_probs=129.3
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEec--CCcEEEEEEc--CCceEEEEecCCCCeeEEEEEcC-CCeE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIE-DGTV 177 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~--~~~V~~vafS--~g~~la~~~~~s~d~tiklWd~~-tG~~ 177 (389)
++.|+ +-|..++++-.+|.+-+=+-..+.+. ++++ .-+.|-.+|+ .-..+.+ +++|+.+.-||++ .+++
T Consensus 126 slD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt---GgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 126 SLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT---GGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred EEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe---cCCCceEEEEEecCCcce
Confidence 46787 77888888888888875554444433 2554 3478999999 2445544 4678999999998 5666
Q ss_pred EEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCc--EEEEEcCCeEEE
Q 016446 178 LKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAV 253 (389)
Q Consensus 178 l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~--~laS~sD~tIkl 253 (389)
+-+ -+-|...|-++..++|.+-+|++|++|.+|++||.++ |+++.-- .-.+.||.+..+|.-+ +|++.=-+-.||
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceE
Confidence 655 4567788999999988889999999999999999984 6665432 2337899999998543 444333344566
Q ss_pred EeCC---Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE-EEeCCCCe
Q 016446 254 WNFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN-VSSILTGK 317 (389)
Q Consensus 254 Wd~~---G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk-lWd~~tg~ 317 (389)
-+.+ +| .+.+.+.|... +..-.+..-.-+||++|. -|+.|+ +|=.-||+
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl-----~YG~DWd~~~~~lATCsF----------YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSL-----CYGGDWDSKDSFLATCSF----------YDKKIRQLWLHITGE 336 (339)
T ss_pred EEecccccchheeeeccccccce-----eeccccccccceeeeeec----------cccceeeeeeeccCC
Confidence 6663 44 45556666543 122222112346888764 367766 88655543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=77.17 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=143.5
Q ss_pred CCCeEEEEecCCCeEEEEe-CCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC----CeEEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFD-LKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED----GTVLKVF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWd-l~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t----G~~l~tl 181 (389)
|-..-+.+.|.|.++|||= ...|+--..++ ...+.+..++ .-.+|..+... +++.-..+.. -..++..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n---gtvtefs~sedfnkm~~~r~~ 110 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN---GTVTEFALSEDFNKMTFLKDY 110 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec---ceEEEEEhhhhhhhcchhhhh
Confidence 4555688999999999995 44566433443 3578888888 56666655433 3443333221 1233444
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc--EEEEEc-CCeEEEEeC--
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--LFLTFR-NRTVAVWNF-- 256 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~--~laS~s-D~tIklWd~-- 256 (389)
.-|..++..+-|+. ..+.+++.+.|+.+.--=.+.|..+. ++...-.+. .++-. +.--|- -+.|.+-.+
T Consensus 111 ~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg---~Y~~~~~~t--~~~~d~~~~fvGd~~gqvt~lr~~~ 184 (404)
T KOG1409|consen 111 LAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLG---GYNFETPAS--ALQFDALYAFVGDHSGQITMLKLEQ 184 (404)
T ss_pred hhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCccc---ceEeeccCC--CCceeeEEEEecccccceEEEEEee
Confidence 46888999999985 47888888999887644444444322 111000000 00000 011111 233333333
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCCCCcccc
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDE 334 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~~~~~~~ 334 (389)
+ -.++.++.+|.+. +.++++.|-.+.|.||+.| ..|-+||+--.+- ...++||.
T Consensus 185 ~~~~~i~~~~~h~~~-----~~~l~Wd~~~~~LfSg~~d-----------~~vi~wdigg~~g~~~el~gh~-------- 240 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGE-----VTCLKWDPGQRLLFSGASD-----------HSVIMWDIGGRKGTAYELQGHN-------- 240 (404)
T ss_pred cCCceEEEEcCcccc-----eEEEEEcCCCcEEEecccc-----------CceEEEeccCCcceeeeeccch--------
Confidence 2 4578899999987 7999999999999998765 7899999864443 45688887
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.|..+.+-+--+.|.|+++||.|.+|+.
T Consensus 241 --------------------------~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 241 --------------------------DKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred --------------------------hhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 57888889899999999999999999984
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.6e-05 Score=71.48 Aligned_cols=171 Identities=8% Similarity=0.037 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCCCe-EEEEecCCcEEEEEEcCCc------eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE
Q 016446 121 QDSIYKVFDLKNYT-MLYSISDKHVQEIKISPGI------MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 121 ~D~tiklWdl~~g~-~l~tl~~~~V~~vafS~g~------~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f 193 (389)
.--.|.+|++.+.. -+..+ -..+.|-|++ +||.+ +.-+..++|...|.+.+..+.. .+.+.|..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~----y~g~~F~p~s~~~kc~~la~g---G~~g~fd~~~~~tn~~h~~~cd--~snn~v~~ 120 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEF----YTGMTFTPGSFINKCVTLADG---GASGQFDLFACNTNDGHLYQCD--VSNNDVTL 120 (344)
T ss_pred ceeeeEeccccCCchhhEEe----eecccccchHhhccccEEEec---cccceeeeecccCcccceeeec--ccccchhh
Confidence 33456778764332 11111 1345666543 56654 3347899999988776666552 22233322
Q ss_pred E---ecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--CcE-EEEecc
Q 016446 194 I---EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL-VTSFED 266 (389)
Q Consensus 194 ~---~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G~~-l~tl~g 266 (389)
. +...-.+..++.|+|+|+-++..+.....+.-.+-.+.+++++||++++++.+ -..|-++.++ ++. +++.+.
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 1 11123577789999999999987665443222223389999999999999998 6789899884 664 342322
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
...-+ =..+.||......|.++.| |++-|||++.
T Consensus 201 ~t~D~----gF~~S~s~~~~~FAv~~Qd-----------g~~~I~DVR~ 234 (344)
T KOG4532|consen 201 PTSDH----GFYNSFSENDLQFAVVFQD-----------GTCAIYDVRN 234 (344)
T ss_pred ccCCC----ceeeeeccCcceEEEEecC-----------CcEEEEEecc
Confidence 22111 2678899999999998764 9999999975
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0016 Score=66.10 Aligned_cols=313 Identities=12% Similarity=0.114 Sum_probs=145.9
Q ss_pred ecccceeeeeeecCCcc----eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce
Q 016446 29 SRETNRRICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 104 (389)
Q Consensus 29 ~~~tg~~l~tl~~~~~~----~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~ 104 (389)
|..||-.+-.|..++.. ....=.|.+||+.|+.+|.+. .. ++..+-|+.+|+.. .| +........
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~---QL-Tdg~g~~~~ 84 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEIT---QL-TDGPGDNTF 84 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEE---E----SS-B-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEE---EC-ccCCCCCcc
Confidence 45677777666655321 111125789999999977643 33 77788888888751 12 211101111
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEecCCcEEEEEEc---CCceEEEEecCCC----------------
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIS---PGIMLLIFNRSSS---------------- 163 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~~~~V~~vafS---~g~~la~~~~~s~---------------- 163 (389)
....+ |+.+.|..--..++++-=|+++.+ ++++++..++-...++ ++..++-......
T Consensus 85 g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 23344 788888877667888888999887 5788888887655554 4555533222211
Q ss_pred ---CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe---CCC-cEEEEECCC-CeEEEEcccCCCceEEE-
Q 016446 164 ---HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPSAF- 234 (389)
Q Consensus 164 ---d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~-tIklWd~~t-g~~~~~l~gh~~~v~sv- 234 (389)
.+.|.--|+.||+....+.. .....-+.|+|.++..|+-+- .|. +-|||=+.+ |.-.+-+..|.. -.++
T Consensus 164 a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~g 241 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVG 241 (386)
T ss_dssp C---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEE
T ss_pred hCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-Ccccc
Confidence 23566678999998777763 366688999977777777653 454 347775543 443333333322 1222
Q ss_pred --EEcCCCcEEEEE-----c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc-----c
Q 016446 235 --IFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-----W 300 (389)
Q Consensus 235 --~fspdg~~laS~-----s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~-----~ 300 (389)
-|.|||..|.-- . +..|.=.|+. ++..... +..+ ..-.--||||+++|-=+.|.|-.. .
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 378999877642 1 3355555664 5432211 1122 235556899999987665533111 0
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN- 379 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs- 379 (389)
..-+|--|+|+++++++.. .|--|.. .|+. .....+.+. .-+.|||||+.++=.|
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~~------------------sw~v---~~~~~q~~h--Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHDT------------------SWKV---LDGDRQVTH--PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEEE-
T ss_pred eecCCcEEEEeccccCcee-eeeeccC------------------ccee---ecCCCccCC--CCCccCCCCCEEEEECC
Confidence 0113457889999877753 4555641 1110 000011111 3579999999765444
Q ss_pred CCCcEEE
Q 016446 380 RHGLVHV 386 (389)
Q Consensus 380 ~D~tIrl 386 (389)
..|...|
T Consensus 371 ~~G~~~v 377 (386)
T PF14583_consen 371 MEGPPAV 377 (386)
T ss_dssp TTSS-EE
T ss_pred CCCCccE
Confidence 5565444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.014 Score=64.13 Aligned_cols=243 Identities=10% Similarity=0.156 Sum_probs=138.8
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--- 122 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D--- 122 (389)
.+..+.+||||+.|+.+...++++ -.++++.++.+|+.... .+ . ... .+++|+ +||+.|.....|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E-----~~~l~v~d~~tg~~l~~-~i-~--~~~--~~~~w~-~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRR-----QYGIRFRNLETGNWYPE-LL-D--NVE--PSFVWA-NDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcE-----EEEEEEEECCCCCCCCc-cc-c--Ccc--eEEEEe-eCCCEEEEEEecCCC
Confidence 467788999999988865444443 46677788888874211 11 1 111 358998 899887776543
Q ss_pred ---CeEEEEeCCCC--e--EEEEecCCcEE-EEEEc-CCceEEEEecCCCCeeEEEEEc--CCCeEEEEEeecCCceeEE
Q 016446 123 ---SIYKVFDLKNY--T--MLYSISDKHVQ-EIKIS-PGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 123 ---~tiklWdl~~g--~--~l~tl~~~~V~-~vafS-~g~~la~~~~~s~d~tiklWd~--~tG~~l~tl~~~~~~~~~v 191 (389)
..|.++++.++ + +++.-..+..+ ++..+ +++.+...+....+..+.+++. .+|+....+..-.+...
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 273 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-- 273 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--
Confidence 36778888888 3 45543333333 55556 8888777777777889999994 35553222321111112
Q ss_pred EEEecCCCeEEEEe-C-CCcEEEE--ECC-CCeEEEEcccCC-CceEEEEEcCCCcEEEEEc-CCeEEEEeC--CCcEEE
Q 016446 192 DFIEQFNEKLLVKQ-E-NENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVT 262 (389)
Q Consensus 192 ~f~~~~~~~l~~~s-~-D~tIklW--d~~-tg~~~~~l~gh~-~~v~sv~fspdg~~laS~s-D~tIklWd~--~G~~l~ 262 (389)
.+. ..++.+...+ . ..+-+|. ++. .++....+.... ..+..+.+. .+.++++.. ++.-+|+-+ .+..+.
T Consensus 274 ~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 274 SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 222 2244444433 1 2333444 554 333323333323 368888887 446666666 776666654 455555
Q ss_pred Eec-cCcCCcCCCCeeEEEEC--CC-CCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 263 SFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 263 tl~-gh~~~~~~~~v~sv~fS--pd-G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.+. +.... +..+.++ ++ +.++++.+.. ..-+++..+|+.+++
T Consensus 352 ~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss~--------~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDDPAY-----VTWIAYNPEPETSRLRYGYSSM--------TTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCCCce-----EeeecccCCCCCceEEEEEecC--------CCCCEEEEEECCCCc
Confidence 554 22111 3334455 44 4466665532 355889999998875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0039 Score=65.48 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=150.8
Q ss_pred EeeccEEEEEecCceEEEEecccceeeeeeecCCc-----c--eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 10 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPD-----E--VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 10 ~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~-----~--~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
++.+++|...+.++.+...|..||+.+=..+.... . ..+.+++. ++..++. +..+ ..+.-.|
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v----~~~~------g~v~AlD 126 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFF----GTFD------GRLVALD 126 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEE----ecCC------CeEEEEE
Confidence 34477788888899999999999998866554321 0 01111111 2244444 2344 4555567
Q ss_pred eccCCCCCcceeEeeecccC------c-eeEEEecCCCeEEEEe--------cCCCeEEEEeCCCCeEEEEecC------
Q 016446 83 IRRGKPDSGFALFESESLKW------P-GFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------ 141 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~------~-~~v~Fs~pdG~~Las~--------s~D~tiklWdl~~g~~l~tl~~------ 141 (389)
.++|+. +|..+.... + .+..+. ++.+++.. ..++.+.-.|+++|+.+.....
T Consensus 127 ~~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 127 AETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred CCCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 788887 666443222 1 123443 35544432 2367888889999998866531
Q ss_pred ----------------CcEE-EEEEc-CCceEEEEecCC---------------CCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 142 ----------------KHVQ-EIKIS-PGIMLLIFNRSS---------------SHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 142 ----------------~~V~-~vafS-~g~~la~~~~~s---------------~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
..|+ +.++. .+.++..+..++ .++.|.-.|+.||+.+-.++.-.+..
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 1122 24444 245555554332 12478889999999998876211111
Q ss_pred eE------EEEEe---cCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE----------
Q 016446 189 KK------VDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---------- 246 (389)
Q Consensus 189 ~~------v~f~~---~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~---------- 246 (389)
+. ..+.. .+++ .+++++.++.+...|.++|+.+-..+.- ...++.+| +.+.+.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCccc
Confidence 11 11110 1222 4666789999999999999987653211 01122233 2222211
Q ss_pred -------c-CCeEEEEeCC-CcEEEEeccCc--------CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 247 -------R-NRTVAVWNFR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 247 -------s-D~tIklWd~~-G~~l~tl~gh~--------~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
. ++.+---|+. |+.+-+.+-.. .+.. -..++. .|.+|..++. ||.|.
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~---~~~~~~--~g~~v~~g~~-----------dG~l~ 419 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW---GGSLAT--AGNLVFAGAA-----------DGYFR 419 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc---CcceEe--cCCeEEEECC-----------CCeEE
Confidence 1 2334444443 44433322110 0000 012222 5667777654 59999
Q ss_pred EEeCCCCeEEEEecC
Q 016446 310 VSSILTGKCLAKINA 324 (389)
Q Consensus 310 lWd~~tg~~l~tl~g 324 (389)
-.|..||+.+...+-
T Consensus 420 ald~~tG~~lW~~~~ 434 (488)
T cd00216 420 AFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCceeeEEEC
Confidence 999999999988753
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0023 Score=64.23 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=148.5
Q ss_pred eeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 53 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 53 spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
||||+.++.+... ...+..=.-....|+|+.+++. .++... ........|| |||+.||... ++.|.++++.+
T Consensus 1 S~d~~~~l~~~~~-~~~~r~s~~~~y~i~d~~~~~~---~~l~~~--~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNY-TKQWRHSFKGDYYIYDIETGEI---TPLTPP--PPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEE-EEESSSEEEEEEEEEETTTTEE---EESS-E--ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECc-EEeeeeccceeEEEEecCCCce---EECcCC--ccccccceee-cCCCeeEEEe-cCceEEEECCC
Confidence 7899887775432 1222222235677888888764 223321 2334568998 9999999875 68899999888
Q ss_pred CeEEE-EecC------------------CcEEEEEEc-CCceEEEEecCCC-----------------------------
Q 016446 133 YTMLY-SISD------------------KHVQEIKIS-PGIMLLIFNRSSS----------------------------- 163 (389)
Q Consensus 133 g~~l~-tl~~------------------~~V~~vafS-~g~~la~~~~~s~----------------------------- 163 (389)
++..+ |..+ ..-.++-+| ||++||...-+..
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 76442 2212 012457788 5888876544321
Q ss_pred ----CeeEEEEEcCCCeEEE-EEe----ecCCceeEEEEEecCCCeEEEE--eCC---CcEEEEECCCCeEEEEccc-CC
Q 016446 164 ----HVPLKILSIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QEN---ENLQILDVRNAELMEVSRT-EF 228 (389)
Q Consensus 164 ----d~tiklWd~~tG~~l~-tl~----~~~~~~~~v~f~~~~~~~l~~~--s~D---~tIklWd~~tg~~~~~l~g-h~ 228 (389)
.-.+.++|+.+|+... ... .-..-+..+.|. +++..++.. ..+ -.+.+.|..+|++....+. ..
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 1134557887776532 211 112334778886 455545553 333 4567779988877444322 22
Q ss_pred Cce---EEEEEc-CCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCe-eEEEECCCCCEEE-EEecCCCcc
Q 016446 229 MTP---SAFIFL-YENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNT-NNIYITSDQDLII-SYCKAEPED 298 (389)
Q Consensus 229 ~~v---~sv~fs-pdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v-~sv~fSpdG~~la-S~s~D~~~~ 298 (389)
.+| ....|. +++..++-.+ ||--.|+ +.+|...+-|+.. .+. | .-+.++++++.|. ++..++
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iyf~a~~~~--- 303 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIYFTANGDN--- 303 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEEEEESSGG---
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEEEEecCCC---
Confidence 333 356665 6666655543 8855555 4567766667633 332 6 4478899987665 443321
Q ss_pred cccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 299 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
....-|..=++.++..+..|..... .-.++.|||||++++-.
T Consensus 304 ----p~~r~lY~v~~~~~~~~~~LT~~~~----------------------------------~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 ----PGERHLYRVSLDSGGEPKCLTCEDG----------------------------------DHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ----TTSBEEEEEETTETTEEEESSTTSS----------------------------------TTEEEEE-TTSSEEEEE
T ss_pred ----CCceEEEEEEeCCCCCeEeccCCCC----------------------------------CceEEEECCCCCEEEEE
Confidence 1112333334442344455554331 11689999999988743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00045 Score=66.63 Aligned_cols=225 Identities=11% Similarity=-0.004 Sum_probs=148.3
Q ss_pred CeEEEEecCCCeEEEEeCCCCe-EEEEec--CC---cEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~-~l~tl~--~~---~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
-.+||-|+.-|..++|.+++.+ .++... .+ -|...+.+.-..+ . ++.|+|+|+.+++.+- .+... |..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~-i---~sndht~k~~~~~~~s-~~~~~-h~~ 157 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLN-I---ASNDHTGKTMVVSGDS-NKFAV-HNQ 157 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccccee-e---ccCCcceeEEEEecCc-cccee-ecc
Confidence 3589999999999999998666 333332 22 2333333322233 2 3677999999986543 33322 333
Q ss_pred c--eeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeE-EE-EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--C
Q 016446 187 R--NKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL-ME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G 258 (389)
Q Consensus 187 ~--~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~-~~-~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--G 258 (389)
. .++++.+ +|+..+++-+....|-++.+.. ++- ++ ++..-++.-....||.....+|.+. ||++-|||++ +
T Consensus 158 ~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 3 5788887 6777777788889999998763 443 33 3455566678889999999999999 9999999995 6
Q ss_pred cEEEEeccCcCCcCCCCeeEEEECCCCC---EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 259 ELVTSFEDHLLWHPDCNTNNIYITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 259 ~~l~tl~gh~~~~~~~~v~sv~fSpdG~---~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
.+..+... +-+++++.++.+.|||-|- ++.|-.. +-+.+=|+++++-.+.+.--.+. .
T Consensus 237 tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhf------------s~~hv~D~R~~~~~q~I~i~~d~------~ 297 (344)
T KOG4532|consen 237 TPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHF------------SRVHVVDTRNYVNHQVIVIPDDV------E 297 (344)
T ss_pred cchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCc------------ceEEEEEcccCceeeEEecCccc------c
Confidence 66554432 2233445589999998543 2333221 57888998888766665443310 0
Q ss_pred CCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 336 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
..-+.+.|..-.|+.++..+...+++.-
T Consensus 298 --------------------~~~~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 298 --------------------RKHNTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred --------------------ccccccccccccccCCCcccccccchhh
Confidence 0112256888889999988888887653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=73.47 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=112.8
Q ss_pred CeEEEEec--CCcEEEEEEc-CCceEEEEecCCCC-eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CC
Q 016446 133 YTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN 207 (389)
Q Consensus 133 g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d-~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D 207 (389)
|.-.+.+. ...+..-+++ +++.++..+..... ..+.++|+.+|+..+.+.. .++...-+|+ ||+.+++.+. .|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCC
Confidence 55444454 4578888999 68888777655554 4699999999998877762 3566777887 8898888864 66
Q ss_pred CcEEE--EECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEE--eCCCcEEEEeccCcCCcCCCCeeEEEE
Q 016446 208 ENLQI--LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 208 ~tIkl--Wd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklW--d~~G~~l~tl~gh~~~~~~~~v~sv~f 281 (389)
+...| .|+.+++..+ |..-...-..=.|+|||+.++-.+ .|.-+|| |.+|.-++.+.-+... + ..-.+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~---~--~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG---N--SNPVW 333 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC---C--cCccC
Confidence 65555 5887777555 333222223456899999998776 5554555 5566654444433332 0 24567
Q ss_pred CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 282 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 282 SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
||||++||..+.. ++ .-.|-+-|+.+|.-++.|.
T Consensus 334 SpdG~~i~~~~~~-------~g-~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 334 SPDGDKIVFESSS-------GG-QWDIDKNDLASGGKIRILT 367 (425)
T ss_pred CCCCCEEEEEecc-------CC-ceeeEEeccCCCCcEEEcc
Confidence 9999999997632 11 1236666666555444444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.003 Score=63.19 Aligned_cols=275 Identities=12% Similarity=0.151 Sum_probs=156.0
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----CcceeEeee
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFESE 98 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~~~l~~~~ 98 (389)
.+.+.|-++|+.|-.+.... .-.++.||||+.+.+++.|-+.-..+-.---+.+||..+=++. ...+-+.
T Consensus 18 rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-- 92 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-- 92 (342)
T ss_dssp EEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred eEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence 68899999999999888653 3557889999999998887665544444445667776433221 1110011
Q ss_pred cccCceeEEEecCCCeEEE--EecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcC-CC
Q 016446 99 SLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~La--s~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~-tG 175 (389)
...+....++| +||+++. -.+.-..|-|=|++..+.+.++..-..+.+=-++.+.+.+.+.+ +++.--.+. .|
T Consensus 93 ~~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~D---Gsl~~v~Ld~~G 168 (342)
T PF06433_consen 93 VVPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGD---GSLLTVTLDADG 168 (342)
T ss_dssp BS--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETT---SCEEEEEETSTS
T ss_pred ecccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecC---CceEEEEECCCC
Confidence 22344557888 8898765 34566788899998888877776433333333422233333333 334333333 67
Q ss_pred eEEEEEeecCCceeEEEEEe----cCCCeEEEEeCCCcEEEEECCCCeE--EEE---cc---cCCCc----eEEEEEcCC
Q 016446 176 TVLKVFYHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDVRNAEL--MEV---SR---TEFMT----PSAFIFLYE 239 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~----~~~~~l~~~s~D~tIklWd~~tg~~--~~~---l~---gh~~~----v~sv~fspd 239 (389)
+..++-+.-.....+-.|.. ..++.++.-+.+|.|+--|+..... ... +. .-..| -.-+|+++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 77654432122222222211 2356777788888888888754432 111 10 00011 123677654
Q ss_pred C-cEEEEE------c--CCeEEEE--eCC-CcEEEEecc-CcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCC
Q 016446 240 N-QLFLTF------R--NRTVAVW--NFR-GELVTSFED-HLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 240 g-~~laS~------s--D~tIklW--d~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D 305 (389)
. ++.+-- + |+-=.|| |+. ++.++.++- |. +.+|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4 444321 2 4444566 555 899998873 32 68999999998 4444443 35
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 016446 306 GSINVSSILTGKCLAKINA 324 (389)
Q Consensus 306 ~tIklWd~~tg~~l~tl~g 324 (389)
+++.++|..||+.++++.+
T Consensus 312 ~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TEEEEEETTT--EEEEE--
T ss_pred CeEEEEeCcCCcEEeehhc
Confidence 8999999999999999975
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=49.46 Aligned_cols=28 Identities=14% Similarity=0.475 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|+++.|+|+++.+++|+.|+.|++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=70.02 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=127.8
Q ss_pred eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc---------CCceEEEEecCCC
Q 016446 94 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS---------PGIMLLIFNRSSS 163 (389)
Q Consensus 94 l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS---------~g~~la~~~~~s~ 163 (389)
.|+-..-+.+..++|+ |||+++.+.+.+ .+.|.-+..+. ...=+.++|+ +|++... .
T Consensus 228 ~~qV~Vdgnpd~v~~s-pdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-----~ 294 (635)
T PRK02888 228 AWQVMVDGNLDNVDTD-YDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-----G 294 (635)
T ss_pred EEEEEeCCCcccceEC-CCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-----C
Confidence 4554444566779998 899999887653 22344333332 1111455555 2444433 1
Q ss_pred CeeEEEEEcCC----C-eEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeE------------EEEcc
Q 016446 164 HVPLKILSIED----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------MEVSR 225 (389)
Q Consensus 164 d~tiklWd~~t----G-~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~------------~~~l~ 225 (389)
+++|.+.|..+ | +.+..++- ...-+.|+++ ||+.++.+++ .+.+|-+.|+++.+. ....+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 36899999988 3 56666652 2555889998 8899888865 899999999988551 22222
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC-----------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G-----------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
- ...+.-.+|.++|....|-- |..|-.||++. ..+..+.-|..+--++.-..=.-.|||++|++.+.
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 1 22344578999999888877 99999999752 34444443433210000111123789999999875
Q ss_pred CCCcccccCC--CCCeEEEEeCCCCeEEEEecCCC
Q 016446 294 AEPEDQWMEG--SAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 294 D~~~~~~~~s--~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
=..++..-.+ .-..-.|-|| +|.-+.-+..|.
T Consensus 452 ~skdrfl~vgpl~pen~qlidI-sgdkM~lv~d~p 485 (635)
T PRK02888 452 FSKDRFLPVGPLHPENDQLIDI-SGDKMKLVHDGP 485 (635)
T ss_pred cccccccCCCCCCCCcceeEEc-cCCeeEEEecCC
Confidence 3211111111 1133456676 466666664443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.038 Score=56.28 Aligned_cols=269 Identities=11% Similarity=0.095 Sum_probs=180.8
Q ss_pred EEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce
Q 016446 25 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 104 (389)
Q Consensus 25 iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~ 104 (389)
+.+++..+.+....+..+ .....++++|+|..+..+.... ++ +--+... .+ ....+-.-...++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n-~~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--RGPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SN-TVTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeecC--CCCceeEEcCccCEEEEEeecC-ce----------eeecccc-cc-eeeeeccCCCcccc
Confidence 667777666666666654 3678899999997665543321 12 1111122 11 11111101113455
Q ss_pred eEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 105 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 105 ~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.++++ ++|. ..+....+..|.+-|.++.+++.+.. +..-..++|+ ++..+..+.......++-+-|..+++.+++.
T Consensus 78 ~i~v~-~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVN-PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeC-CCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 68887 5555 77777778999999988888887776 5577889999 5778877755434689999999999999986
Q ss_pred eecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEE-E---cccCCCceEEEEEcCCCcEEEEEc--C--CeEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVA 252 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~-~---l~gh~~~v~sv~fspdg~~laS~s--D--~tIk 252 (389)
.--..+ ..+++. |++.++... ..+++|.+.|.++-...+ . .-+-.....-++++|+|+++-... + +++-
T Consensus 157 ~vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 157 PVGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred ecCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 632223 788887 778866665 589999999987766663 1 112234567789999999666553 3 6888
Q ss_pred EEeCC-CcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 253 VWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 253 lWd~~-G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.-|.. +....+ +..-... -..++++|+|+++-..... .+++.+-|..+.+...+.....
T Consensus 235 ~id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~~----------~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANSQ----------GGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EEeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEecC----------CCeEEEEeCCCCceeeeecccc
Confidence 88886 665554 2222211 2579999999999886432 4799999988888888776655
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00065 Score=65.25 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=95.5
Q ss_pred CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-C-cEEEEeccCcCCcCCCCeeEEEECC
Q 016446 208 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G-~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
...+.|+++--..+..-..--+.|.+++-.|..+ +++.|+ ||.+-|||.+ + .....|..|... ++.|-|.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 4556777764333222122223488888888555 555666 9999999996 4 356678899887 79999999
Q ss_pred -CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc-cceecccccccC
Q 016446 284 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS-SYIRSTVGEALE 361 (389)
Q Consensus 284 -dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 361 (389)
++..|.++|+ ||.+--||. +++.+. + +.+..+ -...-+..+-|. .++-+.+++-..
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i-~~~~s~--------~s~WLsgD~v~s~i~i~~ll~~~~~ 291 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-I-SNQASV--------ISSWLSGDPVKSRIEITSLLPSRSL 291 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-e-cCcccc--------ccccccCCcccceEeeeccccccce
Confidence 7888998865 599999994 456655 2 112000 000000111122 334444444334
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 362 DITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.|.+ |.--|.+|++|+.-+.|.|.++
T Consensus 292 Sins--fDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 292 SINS--FDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred eeee--eeccCceEEeccccceEEEecc
Confidence 5544 5556889999999999988764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.016 Score=56.12 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=71.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.-+|+++|++|.++.-|.++|+.+=.-.-. ..+.+-+.= =|+.++. |-+. .-+++-++.+|..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~----GCy~------g~lYfl~~~tGs~---- 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVL----GCYS------GGLYFLCVKTGSQ---- 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEE----EEcc------CcEEEEEecchhh----
Confidence 578999999999999999999876432221 334433322 2454444 4444 4555666688865
Q ss_pred eeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec
Q 016446 93 ALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 140 (389)
Q Consensus 93 ~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~ 140 (389)
.|......-+.. ..- .++|+++-.+++|++...=|.+++.|++..+
T Consensus 86 -~w~f~~~~~vk~~a~~-d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 86 -IWNFVILETVKVRAQC-DFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -eeeeeehhhhccceEE-cCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222122222222 122 2579999999999999999999999998876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.9e-05 Score=80.33 Aligned_cols=151 Identities=11% Similarity=0.141 Sum_probs=108.7
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCe---------------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---------------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
..++|+ ...++|+.|+.||.+|+--+.+.. .-|+|+||...|.-|.|+.+.|.|-|+. +|.|-
T Consensus 18 ~c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 18 HCAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 445555 446899999999999999776522 2467899999999999999999999998 99999
Q ss_pred EEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 253 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
+|-+- |.-...+...... ..|.++.+..||+.|+-...|. .-+-||-||. |||. + .|+|..
T Consensus 97 VWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDG--avIVGsvdGN-RIwg----K---eLkg~~----- 158 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDG--AVIVGSVDGN-RIWG----K---ELKGQL----- 158 (1189)
T ss_pred EEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccC--CEEEEeeccc-eecc----h---hcchhe-----
Confidence 99984 7543333333222 2489999999999999988761 1122222332 4553 1 233322
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...|.+|||.+.+.-+-..|.++|+||
T Consensus 159 -------------------------------l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 159 -------------------------------LAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred -------------------------------ccceeecccHHHHHhhhcCCcEEEecc
Confidence 224788999998888889999999886
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.041 Score=56.04 Aligned_cols=226 Identities=13% Similarity=0.110 Sum_probs=146.9
Q ss_pred CceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 102 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 102 ~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
++..++.. |+| +..+.-....++..=+.....-..... + ..-..++++ ++.++.... ..+..|.+-|+.+-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~--~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT--GDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec--CCCCeEEEEcCcccce
Confidence 55678886 788 333333222255555433111111111 2 334678888 577665553 3357999999888888
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVA 252 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIk 252 (389)
+.+..- ...-..+++. ++++.+..+. .+++|-+-|-.+++..++......+ ..+++.|+|+.+... . +++|-
T Consensus 109 ~~~~~v-G~~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 109 LGSIPV-GLGPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eeEeee-ccCCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 887762 1234677876 6676776653 4899999999999988875443333 889999999966555 4 99999
Q ss_pred EEeCCCcEEEE------eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCC
Q 016446 253 VWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INAT 325 (389)
Q Consensus 253 lWd~~G~~l~t------l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH 325 (389)
+-|.++.-+.. ..-+..+ ..++++|||+++-..... +.++++-.-|..+++...+ +..-
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~~--------~~~~~v~~id~~~~~v~~~~~~~~ 251 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVANDG--------SGSNNVLKIDTATGNVTATDLPVG 251 (381)
T ss_pred EEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEecc--------CCCceEEEEeCCCceEEEeccccc
Confidence 99988554432 2222333 689999999977765542 3357898999888887665 2221
Q ss_pred CCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 326 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
+ . .-..++++|+|+.++.....
T Consensus 252 ~---------------------------------~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 252 S---------------------------------G-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred c---------------------------------C-CCCceeECCCCCEEEEEecC
Confidence 1 0 23458899999999888443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0025 Score=66.07 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecc
Q 016446 21 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 100 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~ 100 (389)
.-..+.+=|.+ |.....+.... ..+..-.|+|+++.|+..+-..+.. ..+.++++.+|+. ..+- ...
T Consensus 171 ~~~~l~~~D~d-g~~~~~l~~~~-~~~~~p~ws~~~~~~~y~~f~~~~~------~~i~~~~l~~g~~---~~i~--~~~ 237 (425)
T COG0823 171 LPYELALGDYD-GYNQQKLTDSG-SLILTPAWSPDGKKLAYVSFELGGC------PRIYYLDLNTGKR---PVIL--NFN 237 (425)
T ss_pred CCceEEEEccC-CcceeEecccC-cceeccccCcCCCceEEEEEecCCC------ceEEEEeccCCcc---ceee--ccC
Confidence 34555566664 77777788765 7899999999999999976543332 5788889888875 1111 133
Q ss_pred cCceeEEEecCCCeEEEEec-CCCeEEEE--eCCCCeEEEEec-CCcE-EEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS-DKHV-QEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s-~D~tiklW--dl~~g~~l~tl~-~~~V-~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
++...-+|| |||+.||-++ .|+...|| |+.+++ +..|. ...+ ..=.|| +|.+++-.+..+..-.|.+-|+++
T Consensus 238 g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 238 GNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CccCCccCC-CCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 444557898 9999888554 56665555 665555 33354 2222 256678 699998876665555677778777
Q ss_pred CeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~t--IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
++. ..++...+.-..-..+ |++.+|+.-+ .++. |-+.|+.++.-.+.+. +......-.+.|+|+.+...+
T Consensus 316 ~~~-~riT~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 316 SQV-TRLTFSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred Cce-eEeeccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 665 3333222322233334 7888998855 3444 6677777766544443 233444556899999888776
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.006 Score=63.55 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=115.3
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.|..+.++ |+|+.++-+ .||.+-|......+.... +.-.+.+|++.+..|+-.. ..+|++..--..+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~-g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVC-GDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEE-ETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEE-cCCEEEEEEccCCccccc---CceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 46789998 999998874 578888888434333222 2234567776556666643 367888532222222233
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCCc--
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 259 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G~-- 259 (389)
+-. ..+..+- ++.++.-..++.|.+||+++++.+..+.-. .|..|.|||+|+++|-.++.++-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 310 1122222 245555444559999999999999987643 389999999999999999778889987744
Q ss_pred ----------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 016446 260 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 329 (389)
Q Consensus 260 ----------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~ 329 (389)
.+..+..-... |.+.+|--| -+| ++.. .-||- +..|+. .++. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d-~fi--YtT~-----------~~lkY--l~~Ge~-~~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISER-----IKSGCWVED-CFI--YTTS-----------NHLKY--LVNGET-GIIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT-EEE--EE-T-----------TEEEE--EETTEE-EEEE-E-S--
T ss_pred ccccccCchhceEEEEEecce-----eEEEEEEcC-EEE--EEcC-----------CeEEE--EEcCCc-ceEE-EcC--
Confidence 44444331222 678888665 222 3321 35665 344543 2222 111
Q ss_pred CcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 330 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
.+++=+.+.|+.+.|+.-.+|+.|...
T Consensus 233 -------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 478889999988899999999888654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.7e-05 Score=46.12 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=34.5
Q ss_pred CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 218 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 218 g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
++++..+..|...|.++.|.|+++++++++ |+++++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567777889999999999999999999998 99999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.027 Score=54.84 Aligned_cols=222 Identities=11% Similarity=0.090 Sum_probs=119.3
Q ss_pred ccEEEEEecCceEEEEeccc------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 13 RDIVFALAHSGVCAAFSRET------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~t------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
|+.||+. .|..|.+-.... |+| ++.....-.=+-|+||||+..||.+. .. .+|++.|+.-.
T Consensus 9 Gk~lAi~-qd~~iEiRsa~Ddf~si~~kc--qVpkD~~PQWRkl~WSpD~tlLa~a~----S~------G~i~vfdl~g~ 75 (282)
T PF15492_consen 9 GKLLAIL-QDQCIEIRSAKDDFSSIIGKC--QVPKDPNPQWRKLAWSPDCTLLAYAE----ST------GTIRVFDLMGS 75 (282)
T ss_pred CcEEEEE-eccEEEEEeccCCchheeEEE--ecCCCCCchheEEEECCCCcEEEEEc----CC------CeEEEEecccc
Confidence 5555544 577777755331 333 45544433457899999999998853 22 56777775422
Q ss_pred CCCCcce---eEeeecccCceeEEEecCC-----CeEEEEecCCCeEEEEeCC-----CCeEEEEec-----CCcEEEEE
Q 016446 87 KPDSGFA---LFESESLKWPGFVEFDDVN-----GKVLTYSAQDSIYKVFDLK-----NYTMLYSIS-----DKHVQEIK 148 (389)
Q Consensus 87 ~~~~~~~---l~~~~~~~~~~~v~Fs~pd-----G~~Las~s~D~tiklWdl~-----~g~~l~tl~-----~~~V~~va 148 (389)
++ +..+ -+..+....+..+.|-++. -..|.--..+|.+|=+-+. .++..++++ .+.|.++.
T Consensus 76 ~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 21 0000 0111111223345665332 1123334567666666542 344555553 35899999
Q ss_pred EcCC-ceEEEEecCCC-Cee-------EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCc------EEEE
Q 016446 149 ISPG-IMLLIFNRSSS-HVP-------LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN------LQIL 213 (389)
Q Consensus 149 fS~g-~~la~~~~~s~-d~t-------iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~t------IklW 213 (389)
+.|+ +.|++++.... |++ +--|.+-++..- -+++...+|+. -.+|
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py--------------------yk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY--------------------YKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--------------------EEEccccCcccccccccccee
Confidence 9986 45555432221 111 222332222111 11122222222 2344
Q ss_pred ECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCc
Q 016446 214 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 268 (389)
Q Consensus 214 d~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~ 268 (389)
.+-+...........+.|..+..||||++||+.. +|.|-||++- -++.+.++-+.
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 4444333222234567899999999999999999 9999999984 66666555443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.11 Score=52.18 Aligned_cols=262 Identities=13% Similarity=0.125 Sum_probs=156.2
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC----------CCeEEEEeCCCCeEEEEe--cCC-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSI--SDK- 142 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~----------D~tiklWdl~~g~~l~tl--~~~- 142 (389)
..+.+-|-..|++ .+.-..+....+..| |||+.+..++. .--|.+||.+|-++...+ +..
T Consensus 17 ~rv~viD~d~~k~------lGmi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKL------LGMIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEE------EEEEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcE------EEEeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3566667666664 221122233457787 89999988763 447999999998877643 321
Q ss_pred ------cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 143 ------HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 143 ------~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
..+..++| +|.+++...-. --..|-+=|++.++.+.++.- ....-+. |..+..+.+-|.||++.-..+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFT-PATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEES-SSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSCEEEEEE
T ss_pred hheecccccceEEccCCcEEEEEccC-CCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCceEEEEE
Confidence 23457899 78887765432 236899999999999998872 3444443 223567888899999999888
Q ss_pred C-CCeEEEE----cccCCCceE-EEEEcC-CCcEEEEEcCCeEEEEeCCCcE---EEEec------cCcCCcCCCCeeEE
Q 016446 216 R-NAELMEV----SRTEFMTPS-AFIFLY-ENQLFLTFRNRTVAVWNFRGEL---VTSFE------DHLLWHPDCNTNNI 279 (389)
Q Consensus 216 ~-tg~~~~~----l~gh~~~v~-sv~fsp-dg~~laS~sD~tIklWd~~G~~---l~tl~------gh~~~~~~~~v~sv 279 (389)
. .|+..++ |..-.+++. .=+++. +++++-..-.|.|.-=|+.|+- ...++ .-.+|-|.+. .-+
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~-Q~~ 243 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW-QLI 243 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS-S-E
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce-eee
Confidence 7 5665433 222122111 122333 3344443337777777776542 22222 1124544332 458
Q ss_pred EECCCCCEEEEEecCCC--cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 280 YITSDQDLIISYCKAEP--EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~--~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
|+++..+.|..- +++. +++-..+ ..|-++|+.|+|.+..+.--
T Consensus 244 A~~~~~~rlyvL-Mh~g~~gsHKdpg--teVWv~D~~t~krv~Ri~l~-------------------------------- 288 (342)
T PF06433_consen 244 AYHAASGRLYVL-MHQGGEGSHKDPG--TEVWVYDLKTHKRVARIPLE-------------------------------- 288 (342)
T ss_dssp EEETTTTEEEEE-EEE--TT-TTS-E--EEEEEEETTTTEEEEEEEEE--------------------------------
T ss_pred eeccccCeEEEE-ecCCCCCCccCCc--eEEEEEECCCCeEEEEEeCC--------------------------------
Confidence 888766655542 2210 0010001 24778899999999999742
Q ss_pred cccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 358 EALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
.++.+|+.|.|.+ .|+..+ .++++.++|
T Consensus 289 ---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 289 ---HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 2678999999998 665554 588999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.065 Score=53.27 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=115.1
Q ss_pred CCCe-EEEEecCCCeEEEEeCCCCeE-EEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC---
Q 016446 111 VNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL--- 185 (389)
Q Consensus 111 pdG~-~Las~s~D~tiklWdl~~g~~-l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~--- 185 (389)
|++. ++-+.-..+.|.-|+..+|+. .+..+...-....+.++..|+++. .-+.++++++|.....+..-.
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCC
Confidence 4444 555666788888999877763 344444444455666677776653 347888888777643332110
Q ss_pred --CceeEEEEEecCCCeEEEEeC---------CCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeE
Q 016446 186 --HRNKKVDFIEQFNEKLLVKQE---------NENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 251 (389)
Q Consensus 186 --~~~~~v~f~~~~~~~l~~~s~---------D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tI 251 (389)
.+-+.+... |+|...+..-. -.+-.||=+. .|..++.+.+|-...+.++|||||+.|--+ + -+.|
T Consensus 109 ~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 122444443 44443333211 1222566555 688888888888889999999999777666 5 6777
Q ss_pred EEEeCC---CcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 252 AVWNFR---GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 252 klWd~~---G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.-+++. |.. ..-.......-+ -.++.-.||.+-+++-.+ -+.|..|+.. |+++..+.-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~P----DG~~vDadG~lw~~a~~~----------g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLP----DGMAVDADGNLWVAAVWG----------GGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCC----CceEEeCCCCEEEecccC----------CceEEEECCC-CcEEEEEEC
Confidence 777654 321 111111111111 255666777777644321 1389999966 999988876
Q ss_pred CC
Q 016446 325 TN 326 (389)
Q Consensus 325 H~ 326 (389)
..
T Consensus 253 P~ 254 (307)
T COG3386 253 PV 254 (307)
T ss_pred CC
Confidence 63
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00044 Score=70.55 Aligned_cols=198 Identities=12% Similarity=0.122 Sum_probs=130.7
Q ss_pred CCeEEEEecCCCeEEEEeCCC--CeEE-EEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE--ee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKN--YTML-YSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YH 183 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~--g~~l-~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl--~~ 183 (389)
-.+++.++|.||-+|.|--.. |-.. .-+. -..|.+++.| +|-.+.+. +..|+.+|+.|+++=....-+ ..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv--~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV--EDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec--cCcccceeEEEeeccchhhhccccc
Confidence 467999999999999998532 2221 1122 2467888888 77766553 333789999998864433221 11
Q ss_pred cCCceeEEEEEecCC-CeEEEEe-CCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 016446 184 LLHRNKKVDFIEQFN-EKLLVKQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 258 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~-~~l~~~s-~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G 258 (389)
..+....+. ++-+. ..++++. .++.|.+.|-....| ...-.-|..+|..+-++|-+.-++|.. .|.|+-|..+|
T Consensus 97 lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 112222222 11111 1444444 889999999876665 233355999999999999999999998 99999999876
Q ss_pred c-------EEEEeccCcCC-----cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 259 E-------LVTSFEDHLLW-----HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 259 ~-------~l~tl~gh~~~-----~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
. +.-.++ |... -.-.+-.++.|||+|..++.=+. |.+||+.++.+|++++.+..
T Consensus 176 ~~qfPr~~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 176 PFQFPRTNLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccCcccccccccc-ccchhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhc
Confidence 2 111111 1110 00012368999999999998654 69999999999999988855
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.088 Score=53.74 Aligned_cols=265 Identities=13% Similarity=0.169 Sum_probs=119.3
Q ss_pred ccEEEEEecCceEEEE--ecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCC
Q 016446 13 RDIVFALAHSGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 90 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW--~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~ 90 (389)
.+.|+++..+|.-.|| |+++|+-. +|+.+..+.....+.+|+.+.|+-+. .. +.+.--++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4677777777776665 56655544 56654323333677888888776532 21 2222233345442
Q ss_pred cceeEeeecccCceeEEEe-cCCCeEEEEecC----------------------CCeEEEEeCCCCeEEEEec-CCcEEE
Q 016446 91 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 146 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs-~pdG~~Las~s~----------------------D~tiklWdl~~g~~l~tl~-~~~V~~ 146 (389)
..++. ..-.+.....+. +.|+..++-.-. ...|.-=|+.+|+.--.+. ..|+.-
T Consensus 115 -~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 23443 112222333342 356666553211 2244455788888654444 578999
Q ss_pred EEEcC--CceEEEEecCCCCe-eEEEEEcCC-CeEEEEEeecCC-ceeEEEEEecCCCeEEE-E----eCCCcEEEEECC
Q 016446 147 IKISP--GIMLLIFNRSSSHV-PLKILSIED-GTVLKVFYHLLH-RNKKVDFIEQFNEKLLV-K----QENENLQILDVR 216 (389)
Q Consensus 147 vafS~--g~~la~~~~~s~d~-tiklWd~~t-G~~l~tl~~~~~-~~~~v~f~~~~~~~l~~-~----s~D~tIklWd~~ 216 (389)
+.||| ..+|+-+..+--|. +-|+|-+.+ |.-.+.+..|.. .+..=.|-.|+|..|.- + +.+..|.=.|++
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99995 66776666555444 457886553 444444432221 11222333367776665 2 256678888999
Q ss_pred CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC----------------eEEEEeCCCcEEEEeccCcC-Cc-----CC
Q 016446 217 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHLL-WH-----PD 273 (389)
Q Consensus 217 tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~----------------tIklWd~~G~~l~tl~gh~~-~~-----~~ 273 (389)
+++..+..+ ..+..-+--++||++++.-+ |. -|.|++++..-...|.-|.. |. +.
T Consensus 273 t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 987654322 12333344489999998655 53 45567776332233333321 00 00
Q ss_pred CCeeEEEECCCCCEEEEEecC
Q 016446 274 CNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D 294 (389)
..=.-+.|||||++++=.|.-
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp TT----EE-TTSSEEEEEE-T
T ss_pred cCCCCCccCCCCCEEEEECCC
Confidence 001467899999999987653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0045 Score=65.11 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=77.3
Q ss_pred CcEEEEEEc---CCceEEEEecCCCCeeE----EEEEcCCCeEE--EEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 142 KHVQEIKIS---PGIMLLIFNRSSSHVPL----KILSIEDGTVL--KVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 142 ~~V~~vafS---~g~~la~~~~~s~d~ti----klWd~~tG~~l--~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
..-.++.|| |.+....-.+-+.++.+ .++++..++.- .... -+...+.+++++ |+.++++.|++||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEE
Confidence 345678888 34444333332333322 23454444322 1111 244677888887 7889999999999999
Q ss_pred EEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 016446 212 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 212 lWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~ 257 (389)
|||...+.... ..+.-.+.-++|+|+|-+++.++ -|.+++||+.
T Consensus 285 LyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 285 LYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99997774433 34556788999999999999999 7999999975
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.28 Score=52.26 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=106.5
Q ss_pred eccEEEEEecCceEEEEecccceeeeeeecCCcceE----------EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 12 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v----------~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.+.+|...+.++.|...|.+||+.+=.........+ +.+++. +..|+.+ ..| ..+.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~----t~d------g~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFG----TLD------ARLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEE----cCC------CEEEEE
Confidence 477888888889999999999998876553211111 122332 2344442 233 223333
Q ss_pred EeccCCCCCcceeEeeecccCcee-EEEecC---CCeEEEEec-----CCCeEEEEeCCCCeEEEEecC-----------
Q 016446 82 YIRRGKPDSGFALFESESLKWPGF-VEFDDV---NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD----------- 141 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~p---dG~~Las~s-----~D~tiklWdl~~g~~l~tl~~----------- 141 (389)
|..+|+. +|......+... ...++| +|++++..+ .++.|.-.|+++|+.+..++.
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~ 210 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA 210 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence 4577876 554322111000 001112 566665432 378899999999998865431
Q ss_pred ----------------------CcEEE-EEEcC-CceEEEEecC-----C----CCe----eEEEEEcCCCeEEEEEeec
Q 016446 142 ----------------------KHVQE-IKISP-GIMLLIFNRS-----S----SHV----PLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 142 ----------------------~~V~~-vafS~-g~~la~~~~~-----s----~d~----tiklWd~~tG~~l~tl~~~ 184 (389)
..||. .++-| -.++..+... . .|+ .|-=-|++||+..-.++..
T Consensus 211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 12332 23333 3333333211 1 111 5556799999999888743
Q ss_pred CCceeEEE-------EE-ecCCC---eEEEEeCCCcEEEEECCCCeEE
Q 016446 185 LHRNKKVD-------FI-EQFNE---KLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 185 ~~~~~~v~-------f~-~~~~~---~l~~~s~D~tIklWd~~tg~~~ 221 (389)
.|-++.-. +- +.+++ .++.++.+|-+.+.|.+||+++
T Consensus 291 ~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 33333222 21 12344 3445789999999999999986
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00018 Score=78.28 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=97.8
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--C-CeEEEEe
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--N-RTVAVWN 255 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D-~tIklWd 255 (389)
++|..|......++|+ -+...|+.|+..|.||++|+.+|.-....+.|+.+|+-|-=|-||.++++.+ . --..||+
T Consensus 1095 ~~frd~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4566666677889998 5567888899999999999999999999999999999998888999888774 3 3788999
Q ss_pred CC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 256 FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 256 ~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+. |....+|.+- ..|.||..-+.-|-|+.- ..+-|+|++|+..+.|+
T Consensus 1174 ~~s~~~~~Hsf~ed---------~~vkFsn~~q~r~~gt~~-----------d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED---------KAVKFSNSLQFRALGTEA-----------DDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred cccccCcccccccc---------ceeehhhhHHHHHhcccc-----------cceEEEecccCcHHHHh
Confidence 94 7778777643 478898876655555432 35779999999888883
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.26 Score=51.78 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=125.4
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCCcc-----eEEEEEEeeCCCEEEEEEEeecCCC-cceeeeeeeEeEeccCC
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDNF-SSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~-----~v~sv~~spdg~~l~s~s~~~~~d~-~~l~~~~~~l~~i~~g~ 87 (389)
+.|..++.+|.+..+|.+||+.+=........ ...+..+. +..++.++.. .++ ..-....+.--|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~--~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSG--AEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccc--cccccCCCCcEEEEEECCCCc
Confidence 88999999999999999999998766543210 11122222 2334432211 110 00001334445667787
Q ss_pred CCCcceeEeeeccc---------------------Cce-eEEEecCCCeEEEEecCCC------------------eEEE
Q 016446 88 PDSGFALFESESLK---------------------WPG-FVEFDDVNGKVLTYSAQDS------------------IYKV 127 (389)
Q Consensus 88 ~~~~~~l~~~~~~~---------------------~~~-~v~Fs~pdG~~Las~s~D~------------------tikl 127 (389)
. +|..+... .++ +.+++ +.+.++..++.|+ +|--
T Consensus 187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~A 260 (488)
T cd00216 187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVA 260 (488)
T ss_pred e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEE
Confidence 6 55422110 011 24554 3333444444443 7888
Q ss_pred EeCCCCeEEEEecC--CcEEE--E----EEc-----CCc---eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 128 FDLKNYTMLYSISD--KHVQE--I----KIS-----PGI---MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 128 Wdl~~g~~l~tl~~--~~V~~--v----afS-----~g~---~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
.|+++|+++...+. ...+. . .+. +|. .++.++ .++.+.-.|.+||+.+-..+.. ...+
T Consensus 261 ld~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~---~~G~l~ald~~tG~~~W~~~~~---~~~~ 334 (488)
T cd00216 261 LDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP---KNGFFYVLDRTTGKLISARPEV---EQPM 334 (488)
T ss_pred EcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC---CCceEEEEECCCCcEeeEeEee---cccc
Confidence 89999999876641 21211 1 111 232 344442 3478999999999999876521 1111
Q ss_pred EEEecCCCeEEEE------------------eCCCcEEEEECCCCeEEEEcccC--C------Cce--EEEEEcCCCcEE
Q 016446 192 DFIEQFNEKLLVK------------------QENENLQILDVRNAELMEVSRTE--F------MTP--SAFIFLYENQLF 243 (389)
Q Consensus 192 ~f~~~~~~~l~~~------------------s~D~tIklWd~~tg~~~~~l~gh--~------~~v--~sv~fspdg~~l 243 (389)
+.. ++.+... ..++.+.-.|+.+|+.+-..... . ... ..++ -.+.+|
T Consensus 335 ~~~---~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v 409 (488)
T cd00216 335 AYD---PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLV 409 (488)
T ss_pred ccC---CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeE
Confidence 211 1222221 24677888888888876554322 0 011 1111 245566
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEec
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
..++ ||.+...|.+ |+++-+++
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEE
Confidence 6666 9999999996 99987765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=62.79 Aligned_cols=159 Identities=8% Similarity=0.098 Sum_probs=96.1
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEEcC------CeE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRN------RTV 251 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~sD------~tI 251 (389)
++|..|+.+-..-+.+. .+..++++..|+.+-+.+.+.-.. .+..+.-....-+......++.+.++.= +..
T Consensus 83 ~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 34444444333333332 255778888999999988765111 1111111111222333445666655532 334
Q ss_pred EEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCC
Q 016446 252 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCS 328 (389)
Q Consensus 252 klWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~ 328 (389)
+.|+++ +.+.. .+... ..|.+++-.|..+.++.++.| ||.|-|||..+... .-.|..|.
T Consensus 162 ~a~~~~p~~t~~~---~~~~~---~~v~~l~~hp~qq~~v~cgt~----------dg~~~l~d~rn~~~p~S~l~ahk-- 223 (319)
T KOG4714|consen 162 YANTLDPIKTLIP---SKKAL---DAVTALCSHPAQQHLVCCGTD----------DGIVGLWDARNVAMPVSLLKAHK-- 223 (319)
T ss_pred eeecccccccccc---ccccc---ccchhhhCCcccccEEEEecC----------CCeEEEEEcccccchHHHHHHhh--
Confidence 566664 32221 11211 127888999988777766543 79999999987643 34467776
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECC-CCCEEEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~tIrlW~ 388 (389)
..|+.|-|+| ++..|.++|+||.+--||
T Consensus 224 --------------------------------~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 224 --------------------------------AEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred --------------------------------hhhhheeccCCCchheeEecCCCcEEEEc
Confidence 6999999999 568899999999998887
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.16 Score=51.53 Aligned_cols=206 Identities=14% Similarity=0.109 Sum_probs=112.7
Q ss_pred eeEEEecCCCeEEEEe-----cCCCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCCC--------CeeEE
Q 016446 104 GFVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSSS--------HVPLK 168 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~-----s~D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~--------d~tik 168 (389)
...++| |||++||.+ +...++++.|+++|+.+. .+....-..++|+ +|..+.....+.. ...|+
T Consensus 127 ~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357887 999999855 233579999999998764 3332222238999 6677766655543 56789
Q ss_pred EEEcCCCeEE--EEEeecCCc--eeEEEEEecCCCeEEEEe---CC-CcEEEEECCCC----eEEEEcccCCCceEEEEE
Q 016446 169 ILSIEDGTVL--KVFYHLLHR--NKKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNA----ELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 169 lWd~~tG~~l--~tl~~~~~~--~~~v~f~~~~~~~l~~~s---~D-~tIklWd~~tg----~~~~~l~gh~~~v~sv~f 236 (389)
+|.+-+++.- ..+...... ...+..+ .++..+++.+ .+ ..+.+-|+..+ ...+.+..+...+...+-
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 9998776532 344432233 3456655 6777777643 34 55788888875 233333344444544444
Q ss_pred cCCCcEEEEEc----CCeEEEEeCC-Cc---EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 237 LYENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 237 spdg~~laS~s----D~tIklWd~~-G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
..++.+++... .+.|---++. .. -...+-.|...+ .+..+ +..+++|+-...++ -...|
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~---~l~~~--~~~~~~Lvl~~~~~--------~~~~l 351 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV---SLEDV--SLFKDYLVLSYREN--------GSSRL 351 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE---EEEEE--EEETTEEEEEEEET--------TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce---eEEEE--EEECCEEEEEEEEC--------CccEE
Confidence 44665555442 3444444554 32 122444444321 13333 34555555544431 12478
Q ss_pred EEEeCCCCeEEEEecC
Q 016446 309 NVSSILTGKCLAKINA 324 (389)
Q Consensus 309 klWd~~tg~~l~tl~g 324 (389)
+++|+..++....+..
T Consensus 352 ~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEETT-TEEEEEEES
T ss_pred EEEECCCCcEEeeecC
Confidence 9999774666555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.049 Score=58.88 Aligned_cols=250 Identities=11% Similarity=0.048 Sum_probs=154.7
Q ss_pred ccEEEEEecCceEEEEecccce---------------eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 13 RDIVFALAHSGVCAAFSRETNR---------------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~---------------~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
..+||++..||.+|+-+++|.. .=++|.||. ..|+-|.|+.+.|.|-+ +..+ .-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-~sV~vvTWNe~~QKLTt----SDt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-ASVMVVTWNENNQKLTT----SDTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-ceEEEEEeccccccccc----cCCC------ce
Confidence 6799999999999999987521 113677875 89999999999999877 3344 56
Q ss_pred eeEeEeccCCCC-----CcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE--EEecCCcEEEEEEc
Q 016446 78 TKIEYIRRGKPD-----SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIS 150 (389)
Q Consensus 78 ~~l~~i~~g~~~-----~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l--~tl~~~~V~~vafS 150 (389)
|-+|.+-.|... .+.+ .-+.+.++. .||+.++..=.||.|-+=.+ +|..+ ..|++.....|..|
T Consensus 95 IiVWmlykgsW~EEMiNnRnK-------SvV~SmsWn-~dG~kIcIvYeDGavIVGsv-dGNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNK-------SVVVSMSWN-LDGTKICIVYEDGAVIVGSV-DGNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCc-------cEEEEEEEc-CCCcEEEEEEccCCEEEEee-ccceecchhcchheccceeec
Confidence 778988777651 2211 113456775 67777777777777766554 34433 23444444567778
Q ss_pred C-CceEEEEecCCCCeeEEEEEcCC-------CeEEEEEee----cCCceeEEEE-------EecCCCeEEEEeCCCcEE
Q 016446 151 P-GIMLLIFNRSSSHVPLKILSIED-------GTVLKVFYH----LLHRNKKVDF-------IEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 151 ~-g~~la~~~~~s~d~tiklWd~~t-------G~~l~tl~~----~~~~~~~v~f-------~~~~~~~l~~~s~D~tIk 211 (389)
+ ...++.. -..+.+.|.|-+. -+|+.+.++ ..+.+.++.+ ++|+--.++..-.+|.++
T Consensus 166 ~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 166 EDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 4 3322221 1224667777442 123322221 1122333333 345556777787888887
Q ss_pred EEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc-C---------CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEE
Q 016446 212 ILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 280 (389)
Q Consensus 212 lWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---------~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~ 280 (389)
|---++ -+++-.-.| ..+...-|+|+|..||.++ | +.|..+..-|+.+.||+-... .|.++.
T Consensus 243 iMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-----~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-----CITGLS 315 (1189)
T ss_pred hhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-----eeeeeE
Confidence 754332 233322222 5677788999999999775 3 367777767888888874433 267888
Q ss_pred ECCCCCEEEEEe
Q 016446 281 ITSDQDLIISYC 292 (389)
Q Consensus 281 fSpdG~~laS~s 292 (389)
+-.-|-.||.+-
T Consensus 316 WEg~gLriA~Av 327 (1189)
T KOG2041|consen 316 WEGTGLRIAIAV 327 (1189)
T ss_pred EcCCceEEEEEe
Confidence 877777777653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.039 Score=60.04 Aligned_cols=235 Identities=13% Similarity=0.145 Sum_probs=151.5
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-------C-----c-eEEEEecCCCCeeEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-------G-----I-MLLIFNRSSSHVPLKI 169 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-------g-----~-~la~~~~~s~d~tikl 169 (389)
++.++ |.| ++|.|+. ..|-|=|..+.+.++++. ...|..|+++| + + +||++ .-.+.|-|
T Consensus 20 A~Dw~-~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa---D~~GrIil 93 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA---DISGRIIL 93 (1062)
T ss_pred ccccC-ccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEec---cccCcEEE
Confidence 57786 655 8998886 467788988999888775 56899999874 1 1 33333 33478999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEec--CC-CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEE-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQ--FN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFL- 244 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~--~~-~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~la- 244 (389)
||...+-.+..|+.|..++..+.|.+. +. +.|++-..-.+|-|||..||+.+-....-......+.|-| |.+.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999999999998899988888633 22 4667778889999999999998765443334555567766 333333
Q ss_pred EEcCCeEEEEeC--------CCcEEEEeccCcCCcC------------CC--------CeeEEEECCCCCEEEEEecCCC
Q 016446 245 TFRNRTVAVWNF--------RGELVTSFEDHLLWHP------------DC--------NTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 245 S~sD~tIklWd~--------~G~~l~tl~gh~~~~~------------~~--------~v~sv~fSpdG~~laS~s~D~~ 296 (389)
.++.|.+-+-+. -|+..+.-..|..... .+ +.-..+|+|.-+-++-.-.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--- 250 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--- 250 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe---
Confidence 333666655552 2455554445443100 00 1123567886443322222
Q ss_pred cccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 297 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
-.-+-|.|++=.+|+.+..-.. ++ .+.-.+-=.|...-|+
T Consensus 251 --------prellv~dle~~~~l~vvpier-----------~~---------------------akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIER-----------GG---------------------AKFVDVLPDPRRDALF 290 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEecc-----------CC---------------------cceeEeccCCCcceEE
Confidence 1568899998888887764433 11 1332333334445799
Q ss_pred EecCCCcEEEcc
Q 016446 377 TGNRHGLVHVWS 388 (389)
Q Consensus 377 Sgs~D~tIrlW~ 388 (389)
+.=.||-+.+|.
T Consensus 291 clH~nG~ltirv 302 (1062)
T KOG1912|consen 291 CLHSNGRLTIRV 302 (1062)
T ss_pred EEecCCeEEEEE
Confidence 999999998884
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=68.94 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=55.7
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecc
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
|.+.+++|+.+.|+-||.| |+|.|||..++ +.++.-+.
T Consensus 262 v~~ca~sp~E~kLvlGC~D-----------gSiiLyD~~~~--~t~~~ka~----------------------------- 299 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCED-----------GSIILYDTTRG--VTLLAKAE----------------------------- 299 (545)
T ss_pred ceEEecCcccceEEEEecC-----------CeEEEEEcCCC--eeeeeeec-----------------------------
Confidence 7899999999999999986 99999997655 33332222
Q ss_pred cccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-...-++++|+|.+++.|++-|.+.+||.
T Consensus 300 -----~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 300 -----FIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred -----ccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 25678999999999999999999999984
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=63.44 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=125.5
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCCCCeeEEE----EEcCCCe
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI----LSIEDGT 176 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~d~tikl----Wd~~tG~ 176 (389)
+-++.|- .++..|.-+..+|.|-+=|.++...-. ..-.+.|.+..+| |++++|..... +|+-+ |++-.-+
T Consensus 71 i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~---~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 71 IVSVQFL-ADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR---QTLLFMTKDFEPIAEK 146 (1265)
T ss_pred eEEEEEe-cccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC---cEEEEEeccccchhcc
Confidence 4467776 566666666777888888888777433 3336889999999 57777655221 33322 2211111
Q ss_pred EE-EEEeecCCce------eEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEE--
Q 016446 177 VL-KVFYHLLHRN------KKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTF-- 246 (389)
Q Consensus 177 ~l-~tl~~~~~~~------~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~-- 246 (389)
.| .....-+.++ .+-+|. -..++.++.. ....+. +.. ....+.-.+|.|--||+++|..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfr-gs~gr~~~~~---------~~~~ek~~~~-~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFR-GSEGRQAARQ---------KIEKEKALEQ-IEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccccccccccceecccccceeee-cchhhhcccc---------cccccccccc-hhhccCCceEEEccCCcEEEEEEE
Confidence 11 0000000000 111221 0011111110 000000 000 0122234568999999999984
Q ss_pred ---cC-CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 247 ---RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 247 ---sD-~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
.+ ++||+||.+|.|-.+=+..... =.++++=|.|..||+--.+ .+|++|.++- .+|-.-..+
T Consensus 216 ~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~~--------~sd~~IvffE-rNGL~hg~f 281 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQCK--------TSDSDIVFFE-RNGLRHGEF 281 (1265)
T ss_pred eccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeeec--------CCCCcEEEEe-cCCcccccc
Confidence 26 8999999997654332221111 1478999999999987654 5677899997 556431111
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE---ecCCCcEEEcc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHGLVHVWS 388 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS---gs~D~tIrlW~ 388 (389)
.- ..+..-..|..|+|+.++..||. ..+...|+||-
T Consensus 282 ~l------------------------------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 282 VL------------------------------PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cc------------------------------CCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 00 00000124899999999999998 66666799994
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.29 Score=47.28 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=104.7
Q ss_pred ceeEEEecCC-CeEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC--Ce
Q 016446 103 PGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED--GT 176 (389)
Q Consensus 103 ~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t--G~ 176 (389)
+..++|. |+ +.+.|.....+.|---++ +|+.+.+++ + +...+|++-.++.++..+ ..++++.+.++.. ..
T Consensus 24 ~SGLTy~-pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYN-PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEE-TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TTTTEEEEEEE----TT
T ss_pred ccccEEc-CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cCCCcEEEEEEeccccc
Confidence 3469998 65 666666777788876675 789887775 3 578999999444444442 3457888877732 11
Q ss_pred E----EEEEe--e---cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC---CeEEEE--c------ccCCCceEEEEE
Q 016446 177 V----LKVFY--H---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AELMEV--S------RTEFMTPSAFIF 236 (389)
Q Consensus 177 ~----l~tl~--~---~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t---g~~~~~--l------~gh~~~v~sv~f 236 (389)
. .+.+. . +-.....+++. +.++.++++.+....+|+.+.. +..+.. . ...-..+.+++|
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 12232 1 11235789998 5577888888888888888764 222221 1 123446889999
Q ss_pred cCC-CcEEEEEc-CCeEEEEeCCCcEEEEec--c--Cc--CCcCCCCeeEEEECCCCCEEEEE
Q 016446 237 LYE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HL--LWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 237 spd-g~~laS~s-D~tIklWd~~G~~l~tl~--g--h~--~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.|. |++++-+. .+.|-..|.+|+.+..+. . |. ..++. -..|+|.|||++.++.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Q--pEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQ--PEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---S--EEEEEE-TT--EEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCC--ccEEEECCCCCEEEEc
Confidence 875 67777776 899999998899776544 2 11 01111 3689999999988873
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.15 Score=49.18 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=105.7
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La 117 (389)
.|.+-. +-+-.|+|+|+.++|.++. ..+ ..+.--+ .+|++....++ .-++-+..|++. .+|++++
T Consensus 16 ~l~g~~-~e~SGLTy~pd~~tLfaV~---d~~------~~i~els-~~G~vlr~i~l---~g~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGIL-DELSGLTYNPDTGTLFAVQ---DEP------GEIYELS-LDGKVLRRIPL---DGFGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT---S-EEEEEEETTTTEEEEEE---TTT------TEEEEEE-TT--EEEEEE----SS-SSEEEEEE--STTEEEE
T ss_pred ECCCcc-CCccccEEcCCCCeEEEEE---CCC------CEEEEEc-CCCCEEEEEeC---CCCCCceeEEEE-CCCEEEE
Confidence 345544 3489999999999998864 222 2222222 56776322222 234556779997 7888888
Q ss_pred EecCCCeEEEEeCCCCe------EEEEec------C-CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCC---CeEEEE
Q 016446 118 YSAQDSIYKVFDLKNYT------MLYSIS------D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKV 180 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~------~l~tl~------~-~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~t---G~~l~t 180 (389)
+.-.++++.+.++.... ....+. + ..+..|++.+ ++.|..+. ...+.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceee
Confidence 77679999999983211 112221 2 3699999995 56666653 235777776653 333332
Q ss_pred Ee--------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--cc-------CCCceEEEEEcCCCcEE
Q 016446 181 FY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RT-------EFMTPSAFIFLYENQLF 243 (389)
Q Consensus 181 l~--------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~g-------h~~~v~sv~fspdg~~l 243 (389)
.. ....-.-+++|.+..+..++.+.+++.|-..| .+|+.+..+ .. ...+...|||.|+|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 12233477888865566666688999999999 578876543 22 12479999999999998
Q ss_pred EEEc
Q 016446 244 LTFR 247 (389)
Q Consensus 244 aS~s 247 (389)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8775
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.55 Score=48.42 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=36.8
Q ss_pred eEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 124 IYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
.|++++. .|+++.++. .+.|-++.|++...|+.-. .|+++++.|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 5999996 888887764 5789999999655444432 34799999986 565
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=64.03 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=119.6
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 197 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.++.++.|+.-..|--.|+.+++..++.+-.... ....-.+++++.+|. -|+|-|-|.+ -+.++++..|++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---- 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---- 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc----
Confidence 3567888886667777888887776664332222 344567889999998 9999999997 8899999999975
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC------C----CcccccCCCC--CCC
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS------P----KVDDELGSSS--TGK 342 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~------~----~~~~~~~~~~--~~~ 342 (389)
| .+|+-.|..|++++... .+---.-|.=||+||++.=+.+..++=|-+- | -.++.+++|+ -+.
T Consensus 220 -i--SDfDv~GNlLitCG~S~--R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 220 -I--SDFDVQGNLLITCGYSM--RRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -e--eeeeccCCeEEEeeccc--ccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence 2 35777899999987531 0001113567999999876666555443321 0 1124455554 222
Q ss_pred ccccccc---cceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 343 SKKLNKS---SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 343 ~~~~~~~---~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.++-|- ..+.+..+ ..+.+..+||.|+-||-|..+|-|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~---s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNG---SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCC---CcceeEEecCCCceEEEecccCcEeeec
Confidence 2233321 12222222 4699999999999999999999999994
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.18 Score=52.01 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=41.7
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
.|++++ ..|+.+.++.--.+++-.+.|.. .+.|+.-..||+++++|+. |+.
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 588999 57899988875557888888863 7889998999999999996 555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.59 Score=53.35 Aligned_cols=207 Identities=13% Similarity=0.139 Sum_probs=119.0
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEe-----ecCCCcceeeee
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY-----ASDNFSSLKCRS 77 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~-----~~~d~~~l~~~~ 77 (389)
.|..+.|. ..-|.....+|.|-+-|.++...- +-|.-++.|.+..||||+++++.+... -+.+|.-+--+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 45666666 444566667888888888765433 334445789999999999998886421 111110000000
Q ss_pred eeEeEeccCCCC---------------CcceeEe---e-------ecccCceeEEEecCCCeEEEEec----CC-CeEEE
Q 016446 78 TKIEYIRRGKPD---------------SGFALFE---S-------ESLKWPGFVEFDDVNGKVLTYSA----QD-SIYKV 127 (389)
Q Consensus 78 ~~l~~i~~g~~~---------------~~~~l~~---~-------~~~~~~~~v~Fs~pdG~~Las~s----~D-~tikl 127 (389)
..--+.+.++.. ..++.+. + +.-.|-.+|.+- -||++.|... .+ ++||+
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEeccCCceeEEE
Confidence 000000111110 0000110 0 011122348886 7999988732 45 89999
Q ss_pred EeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe----ecCCceeEEEEEecCCCe
Q 016446 128 FDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLLHRNKKVDFIEQFNEK 200 (389)
Q Consensus 128 Wdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~----~~~~~~~~v~f~~~~~~~ 200 (389)
||-+ |.+-.+-. ...=.++++-| |..+|+-.....|.+|.++. ++|-....|. -....+..++|+ .+.+.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wn-s~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWN-SNSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeec-CCCCc
Confidence 9975 66543332 12234566666 88998888888888999998 5676555432 122337889998 44566
Q ss_pred EEE---EeCCCcEEEEECCC
Q 016446 201 LLV---KQENENLQILDVRN 217 (389)
Q Consensus 201 l~~---~s~D~tIklWd~~t 217 (389)
|+. ..+...|++|-..+
T Consensus 304 LAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeeecccccceEEEEEecC
Confidence 665 23666699998754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.57 Score=45.60 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=121.3
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
+.+++.+.......-.+.|-.+|..+-|+. -+.- -.++..++.+|+......| ....|+ ..++.- ++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG---~yG~-----S~l~~~d~~tg~~~~~~~l-~~~~Fg--EGit~~--~d 100 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTG---LYGQ-----SSLRKVDLETGKVLQSVPL-PPRYFG--EGITIL--GD 100 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEEC---STTE-----EEEEEEETTTSSEEEEEE--TTT--E--EEEEEE--TT
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCC---CCCc-----EEEEEEECCCCcEEEEEEC-Cccccc--eeEEEE--CC
Confidence 556677766666788899989999888863 3331 3455677788887322221 011222 346664 34
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec--CC---c
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LH---R 187 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~--~~---~ 187 (389)
++..--=..++.-+||.++-+++.+++ ...=|.++ ++|+.|..+..+ ..+..+|.++-+..++++-. .. .
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SDGS---~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSDGS---SRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE-SS---SEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEECCc---cceEEECCcccceEEEEEEEECCEECCC
Confidence 444333468899999999999998887 44566777 677777665322 58999999998888877622 22 3
Q ss_pred eeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcc------------cC---CCceEEEEEcC-CCcEEEEEc
Q 016446 188 NKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR------------TE---FMTPSAFIFLY-ENQLFLTFR 247 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~------------gh---~~~v~sv~fsp-dg~~laS~s 247 (389)
.+++.+. ++.|.+-- ....|-.-|.++|+++..+. .+ .+-.+-||+.| .+++++||.
T Consensus 177 LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4777776 67777764 56667777999999987641 11 45689999966 556777874
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.69 Score=46.18 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=56.3
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE---EEEec------CCcEEEEEEcCC----ceEEEEecC------
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKHVQEIKISPG----IMLLIFNRS------ 161 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~---l~tl~------~~~V~~vafS~g----~~la~~~~~------ 161 (389)
..|.+++|. |||+++++- ..|.|++.+ .+|.. +..+. ......++|+|+ .+|......
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 357899998 899999864 599999999 56664 33442 246899999972 444443321
Q ss_pred CCCeeEEEEEcCCC-------eEE-EEEee---cCCceeEEEEEecCCCeEEE
Q 016446 162 SSHVPLKILSIEDG-------TVL-KVFYH---LLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 162 s~d~tiklWd~~tG-------~~l-~tl~~---~~~~~~~v~f~~~~~~~l~~ 203 (389)
..+..|.-|....+ +.+ ..+.. ..|.-..++|. |++...++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDGKLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTSEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCCcEEEE
Confidence 11123444554443 112 22232 34556889998 66644444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.23 Score=53.64 Aligned_cols=189 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred ceEEEEEEeeCCCEEEEEEEee--cCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYA--SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 122 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~--~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D 122 (389)
..+.+.++||||+.+|.+.... ..| ..-.||-...|.. ...+.. .. ....-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~--~~~lt~-g~--~~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGV--AVQVLE-GH--SLTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCc--ceeeec-CC--CCCCceEC-CCCCceEEEecC
Confidence 4678999999999998865311 112 2233444333332 122321 11 12346887 898888777532
Q ss_pred -CeEEEE-----------eCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEE---EEcCCCe-EE---EEEe
Q 016446 123 -SIYKVF-----------DLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKI---LSIEDGT-VL---KVFY 182 (389)
Q Consensus 123 -~tiklW-----------dl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tikl---Wd~~tG~-~l---~tl~ 182 (389)
..+++. ++..++....+ ...|.++++| ||.++|.... +.|.+ =....|+ .+ +.+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEee
Confidence 223333 34333322211 3569999999 7998887642 34554 4445665 11 1122
Q ss_pred -ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEccc--CCCceEEEEEcCCCcEEEEEcCCeEEE
Q 016446 183 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRT--EFMTPSAFIFLYENQLFLTFRNRTVAV 253 (389)
Q Consensus 183 -~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~g--h~~~v~sv~fspdg~~laS~sD~tIkl 253 (389)
........++|. . ++.|+.+..+....+|-+. .|.....+.+ ....+.+|+=+| +.++++.+++.+++
T Consensus 493 ~~l~~~~~~l~W~-~-~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~~l 564 (591)
T PRK13616 493 PGLGDTAVSLDWR-T-GDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVLQL 564 (591)
T ss_pred cccCCccccceEe-c-CCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceEEe
Confidence 222335778886 3 4556665544444455443 3444333333 356778888777 45666656775543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=64.39 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=104.3
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEcCCceEEEEecCCC------CeeEEEEEcCCCeEEEEEe
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSS------HVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS~g~~la~~~~~s~------d~tiklWd~~tG~~l~tl~ 182 (389)
.|++.|-+|.+.|+|-|=|+++.+.++++.. +.|.++.. .|..|++++-... |.=||+||++.=+.|..+.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5789999999999999999999999988863 45554433 4667766654432 4568999998766665555
Q ss_pred ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeE---EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL---MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~---~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
.+-++ .=+.|.|.-..+++..|.-|..++=|..+ +++ ++....-...+.++.+|+.|+.+|-+. +|.|.+|--
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44333 23455544457888889899999888322 222 333344555699999999999999998 999999974
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00049 Score=72.86 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=107.6
Q ss_pred eecCCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCC--eEEE---EcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELME---VSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg--~~~~---~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
++|......++|++-|...||+|= .|-.++|||+.++ .+.+ ...+--....++++..|-+++.+|. .+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 355566788899876667777763 6889999999988 2222 1122233455889999999999998 8899
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeC-CC-CeEEEEecCCCCC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-LT-GKCLAKINATNCS 328 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~-~t-g~~l~tl~gH~~~ 328 (389)
++.|++..+.+..+-... +|..+.++| .+.|+++.+ |+-|-|||. .. .+.++.+...+
T Consensus 179 ~ifdlRqs~~~~~svnTk-----~vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~-- 239 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTK-----YVQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNE-- 239 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----hcccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCC--
Confidence 999997554433222222 257788899 999999865 589999993 11 23343433222
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCC-CcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRH-GLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D-~tIrlW~ 388 (389)
++|. +.+..++|.|-.. .|++-++| ++|++.+
T Consensus 240 ------------------N~~~----------~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 240 ------------------NKKP----------KQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ------------------CCcc----------cceeeEEeccCCcchhhhhccCcceEEEec
Confidence 1111 4689999999763 46666665 6888876
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=42.32 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEE
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~ 158 (389)
..|+-||.|..||+|+ ..+++..+. .+.|.++.-..+.++|.+
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~ 59 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYA 59 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEE
Confidence 4688899999999998 556777776 467777766654555554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.88 Score=43.28 Aligned_cols=194 Identities=18% Similarity=0.244 Sum_probs=118.7
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE---------------Eec-CCcEEEEEEc----CCceEEEEecCC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SIS-DKHVQEIKIS----PGIMLLIFNRSS 162 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~---------------tl~-~~~V~~vafS----~g~~la~~~~~s 162 (389)
+..++.- |+-+.|+.-+ |+++.+.++..-.... .+. ...|..++.. .+.+|+.+. .
T Consensus 38 I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k- 113 (275)
T PF00780_consen 38 ITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K- 113 (275)
T ss_pred EEEEEEe-cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C-
Confidence 5666666 4444555443 5999999987655333 222 2456666621 345565553 2
Q ss_pred CCeeEEEEEcCCC-----eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC--------
Q 016446 163 SHVPLKILSIEDG-----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-------- 229 (389)
Q Consensus 163 ~d~tiklWd~~tG-----~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~-------- 229 (389)
++|.++..... +.++.+.- ......++|. +..++.+.. ....+.|+.++.....+.....
T Consensus 114 --k~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~ 186 (275)
T PF00780_consen 114 --KKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRN 186 (275)
T ss_pred --CEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcc
Confidence 47888766542 56677663 3677888886 567777764 4488999998887766532221
Q ss_pred ---ceEEEEEcCCCcEEEEEcCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 230 ---TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 230 ---~v~sv~fspdg~~laS~sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
....+.-.+++++|+.. |..--.=|.+|+..+ ++.-.|.. ...++++ ...||+.-+. +
T Consensus 187 ~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~--~~pyli~~~~------------~ 247 (275)
T PF00780_consen 187 SSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSR--KSTIQWSS--APQSVAY--SSPYLIAFSS------------N 247 (275)
T ss_pred cCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCc--ccEEEcCC--chhEEEE--ECCEEEEECC------------C
Confidence 12333334556777654 444446677787655 22222211 1356666 3457776543 6
Q ss_pred eEEEEeCCCCeEEEEecCCC
Q 016446 307 SINVSSILTGKCLAKINATN 326 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~gH~ 326 (389)
.|.||++.+|++++++.++.
T Consensus 248 ~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 248 SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEEECcCCcEEEEEECCC
Confidence 79999999999999998765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0083 Score=60.74 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
++..+..+=+.+.-+.+|+.-+++++|++...+.+..++.+.+|+|-|+++..++.....| ..+|+++|--|....+-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 3444444444455666777888999999444456777999999999999999999999988 799999998777777766
Q ss_pred c--CCeEEEEeCC-C-cEEEEeccCcCCcCCC---CeeEEEECCCCCEEEEEecC
Q 016446 247 R--NRTVAVWNFR-G-ELVTSFEDHLLWHPDC---NTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 247 s--D~tIklWd~~-G-~~l~tl~gh~~~~~~~---~v~sv~fSpdG~~laS~s~D 294 (389)
+ .|.|-++|++ - ..+..|.+.....|-+ .|..-..+|-|-+|+..+.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~ 308 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV 308 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh
Confidence 5 8999999985 2 2344444422211100 01222456677777776653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.1 Score=43.98 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=95.1
Q ss_pred eEEEEeCCCCeEEEEe--c-CCcEEE---EEEcC-----CceEEEEecCC-------CCeeEEEEEcCCC----eEEEEE
Q 016446 124 IYKVFDLKNYTMLYSI--S-DKHVQE---IKISP-----GIMLLIFNRSS-------SHVPLKILSIEDG----TVLKVF 181 (389)
Q Consensus 124 tiklWdl~~g~~l~tl--~-~~~V~~---vafS~-----g~~la~~~~~s-------~d~tiklWd~~tG----~~l~tl 181 (389)
.|||-|..+.+.+.++ . .+.|.+ +.|.. -.+++++..-. ..+.|.+.++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5677777666665443 2 233443 33332 24555553311 1278999999884 233322
Q ss_pred e--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEE--
Q 016446 182 Y--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVW-- 254 (389)
Q Consensus 182 ~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklW-- 254 (389)
. ...+.+.+++-. +++++++ .+++|.+|++...+ ++..-.- ....+.++... +.+++.|. -+.|-+.
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 234666776643 6775554 46999999999888 5443211 22245554433 55777776 6666666
Q ss_pred eCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 255 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 255 d~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+-++..+..+.....+. .+.++.|-+|++.++.+.. +|.|.++...
T Consensus 157 ~~~~~~l~~va~d~~~~---~v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPR---WVTAAEFLVDEDTIIVGDK-----------DGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-B---EEEEEEEE-SSSEEEEEET-----------TSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCc---cEEEEEEecCCcEEEEEcC-----------CCeEEEEEEC
Confidence 44465444444322221 2788999888877776654 4888888754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=2.1 Score=47.12 Aligned_cols=181 Identities=7% Similarity=0.036 Sum_probs=97.5
Q ss_pred eeEEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCC---CCeeEEEEEcC
Q 016446 104 GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSS---SHVPLKILSIE 173 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s---~d~tiklWd~~ 173 (389)
..+.+| |||++||.+-. .-+|++=|+.+|+.+- .+.+.. ..++|+ +++.|+.+..+. ....|.++++.
T Consensus 130 ~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 357887 89999987643 3468888998887432 222222 468999 777776664432 22578889999
Q ss_pred CC--eEEEEEeecCCceeEEEE-EecCCCeEEEEe---CCCcEEEEEC--CCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 174 DG--TVLKVFYHLLHRNKKVDF-IEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 174 tG--~~l~tl~~~~~~~~~v~f-~~~~~~~l~~~s---~D~tIklWd~--~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
|+ +-...++...+... +.. ...++..++..+ .+..+.+++. .+++....+..-......+. ..++.+.+.
T Consensus 208 t~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~ 285 (686)
T PRK10115 208 TPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLR 285 (686)
T ss_pred CChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEE
Confidence 98 33333432222233 332 223667666643 5678999994 34553222222222333332 444555555
Q ss_pred Ec-C-CeEEEEeCC-C--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 246 FR-N-RTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 246 ~s-D-~tIklWd~~-G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.. + ..-+|..+. . ...+++-.|... ..|.++.++. ..++++..
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~---~~i~~~~~~~-~~l~~~~~ 333 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPREN---IMLEGFTLFT-DWLVVEER 333 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCC---CEEEEEEEEC-CEEEEEEE
Confidence 53 2 355555442 1 122344444221 1267788772 24444443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=43.70 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=101.8
Q ss_pred CeEEEEecC---CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce--eEEEEEecCCCeEEE-Ee
Q 016446 133 YTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQ 205 (389)
Q Consensus 133 g~~l~tl~~---~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~--~~v~f~~~~~~~l~~-~s 205 (389)
.+.+.++++ .....+.|- +|..+-++..- ....|+.+|+.||+.++...-. ... ..++.. +++|.- .=
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEES
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEe
Confidence 445666653 467889995 67666555433 3579999999999998776521 222 233332 333333 45
Q ss_pred CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 206 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 206 ~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+++.-+||..+-+.+.++.- ...=|.++ +.+.+++.|-+..++..+|.. -+.+++++-.....+-..++.+.+- |
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-PGEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE--SSS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred cCCeEEEEccccceEEEEEec-CCcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 889999999999998887643 23556676 334444444447788888874 5555555432221111236777764 7
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|.+.|=--.. ..|-.-|..||+++..+.-
T Consensus 185 G~IyANVW~t-----------d~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 185 GKIYANVWQT-----------DRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TEEEEEETTS-----------SEEEEEETTT-BEEEEEE-
T ss_pred CEEEEEeCCC-----------CeEEEEeCCCCeEEEEEEh
Confidence 8877754332 4666779999999888743
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.6 Score=45.95 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=102.3
Q ss_pred eEEEEEcCCCeEEEEEeecC-CceeEEEEEecC------CCeEEEEe-----C-----CCcEEEEECCCC----eEEEEc
Q 016446 166 PLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNA----ELMEVS 224 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~------~~~l~~~s-----~-----D~tIklWd~~tg----~~~~~l 224 (389)
.|||-|..+.+.+.+++... ..+.++...... ..+++.|. + .|.|.++++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888887888777766322 233444443222 24566653 1 188999999884 122222
Q ss_pred --ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-Cc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 225 --RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 225 --~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
....++|.+++-- +|+ |+.+..++|.+|++. .+ ++. ..-+..+. .+.++. .-+.+|+.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~-~~~~~~~~---~i~sl~--~~~~~I~vgD~~------ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLK-KAFYDSPF---YITSLS--VFKNYILVGDAM------ 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEE-EEEE-BSS---SEEEEE--EETTEEEEEESS------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchh-hheecceE---EEEEEe--ccccEEEEEEcc------
Confidence 3456788888665 555 666668999999996 55 443 22222221 244544 446688887543
Q ss_pred cCCCCCeEEEEeCC-CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 301 MEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 301 ~~s~D~tIklWd~~-tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
+.|-+.... .++.+..+..... ..+|+++.|-+|++.++.+.
T Consensus 149 -----~sv~~~~~~~~~~~l~~va~d~~--------------------------------~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 149 -----KSVSLLRYDEENNKLILVARDYQ--------------------------------PRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp -----SSEEEEEEETTTE-EEEEEEESS---------------------------------BEEEEEEEE-SSSEEEEEE
T ss_pred -----cCEEEEEEEccCCEEEEEEecCC--------------------------------CccEEEEEEecCCcEEEEEc
Confidence 566666332 3443444332110 04799999998888999999
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
.+|.+.+..
T Consensus 192 ~~gnl~~l~ 200 (321)
T PF03178_consen 192 KDGNLFVLR 200 (321)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999988754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.3 Score=52.80 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=79.0
Q ss_pred CcEEEEEEc-CCceEEEEec---CCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEe----------C
Q 016446 142 KHVQEIKIS-PGIMLLIFNR---SSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----------E 206 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~---~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s----------~ 206 (389)
..+.+.++| +|+++|.... ...|..-+||=.. .|+. +.+.. ......-.|+ |+++.+...+ .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence 367889999 6888876642 1123334455332 3333 44431 1235556665 5656555432 2
Q ss_pred --CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEE---EeCC-CcE-E---EEeccCcCCcCCCCe
Q 016446 207 --NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAV---WNFR-GEL-V---TSFEDHLLWHPDCNT 276 (389)
Q Consensus 207 --D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIkl---Wd~~-G~~-l---~tl~gh~~~~~~~~v 276 (389)
.+.+.+.++..|+..+ .....|.++.|||||+.+|--.++.|.+ =..+ |+. + +.|..-... .+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~----~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGD----TA 499 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCC----cc
Confidence 2334444777776654 2345699999999999999777777666 2333 651 1 112211111 14
Q ss_pred eEEEECCCCCEEEE
Q 016446 277 NNIYITSDQDLIIS 290 (389)
Q Consensus 277 ~sv~fSpdG~~laS 290 (389)
.+++|.+|+++++.
T Consensus 500 ~~l~W~~~~~L~V~ 513 (591)
T PRK13616 500 VSLDWRTGDSLVVG 513 (591)
T ss_pred ccceEecCCEEEEE
Confidence 78999999996654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0095 Score=60.34 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred eccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
|.+|... |++++|||... +|..+|.+ ++|||-|+++-.++.+...|.
T Consensus 189 lp~~g~~-----IrdlafSp~~~GLl~~asl~-----------nkiki~dlet~~~vssy~a~~---------------- 236 (463)
T KOG1645|consen 189 LPGEGSF-----IRDLAFSPFNEGLLGLASLG-----------NKIKIMDLETSCVVSSYIAYN---------------- 236 (463)
T ss_pred ccccchh-----hhhhccCccccceeeeeccC-----------ceEEEEecccceeeeheeccC----------------
Confidence 4455554 79999999998 67777654 899999999999999998885
Q ss_pred ccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
.+||++|.-|. +.|+.|-..|.|-++|.
T Consensus 237 -------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 -------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred -------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 89999999876 78999999999999874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.29 Score=51.15 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=76.8
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEE-eCCCcEEEEecc
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW-NFRGELVTSFED 266 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklW-d~~G~~l~tl~g 266 (389)
...+.++ |.+..++. +.|+.--|+.....+-... +.-..++|.+.+++.+--+.++|+|. +++.+..+.++-
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 4667776 54544444 8888888888544443332 22345789997775444448999995 555443333332
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
.. .+..+.. |..|+..+. +.|.++|+++++.++.+.-
T Consensus 108 ~~------~~~~If~---G~LL~~~~~------------~~i~~yDw~~~~~i~~i~v---------------------- 144 (443)
T PF04053_consen 108 PF------SVEKIFG---GNLLGVKSS------------DFICFYDWETGKLIRRIDV---------------------- 144 (443)
T ss_dssp SS-------EEEEE----SSSEEEEET------------TEEEEE-TTT--EEEEESS----------------------
T ss_pred Cc------ccceEEc---CcEEEEECC------------CCEEEEEhhHcceeeEEec----------------------
Confidence 11 1455554 999988753 5899999999999999963
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
.+|..|.+||+|+.+|=.+.|..
T Consensus 145 --------------~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 145 --------------SAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp ---------------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred --------------CCCcEEEEECCCCEEEEEeCCeE
Confidence 25889999999999999987743
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.2 Score=42.33 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=126.6
Q ss_pred eeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCC
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 90 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~ 90 (389)
..++.|+.|.++| +-+++.........+..- ..|..+..-|+-+.|+.-+ | +.+.+.++..=....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-----d------~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-----D------GQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-----C------CccEEEEchhhcccc
Confidence 3489999999999 778888333333333332 3499999999877776632 2 344444442211110
Q ss_pred cc-e-eE--------eeecccCceeEEEe---cCCC-eEEEEecCCCeEEEEeCCCC-----eEEEEec-CCcEEEEEEc
Q 016446 91 GF-A-LF--------ESESLKWPGFVEFD---DVNG-KVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 91 ~~-~-l~--------~~~~~~~~~~v~Fs---~pdG-~~Las~s~D~tiklWdl~~g-----~~l~tl~-~~~V~~vafS 150 (389)
.. . .+ .......+ -.|. .+.+ .+|+ ....++|.++..... +.+..+. .+.+.+++|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v--~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGV--SFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred ccccccccccccccccccccCCe--eEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 00 0 00 00111111 1222 1333 4444 455679999987653 3455555 5789999999
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC---------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeE
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAEL 220 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~---------~~~~v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~ 220 (389)
++..+ .+.. ....+-|+.+|+....+..... ....+.... ++++.|+. .|..--.-|. .|+.
T Consensus 148 ~~~i~-v~~~----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~--~~~~g~fv~~-~G~~ 219 (275)
T PF00780_consen 148 GNKIC-VGTS----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC--YDNIGVFVNK-NGEP 219 (275)
T ss_pred CCEEE-EEeC----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE--ecceEEEEcC-CCCc
Confidence 54444 4432 3578889988876554431111 111222211 23444543 2333334444 4443
Q ss_pred EE--EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCc
Q 016446 221 ME--VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 268 (389)
Q Consensus 221 ~~--~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~ 268 (389)
.+ ++.= ...+.++++ ...+|+...++.|.||++. |++++++.++.
T Consensus 220 ~r~~~i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 220 SRKSTIQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred CcccEEEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECCC
Confidence 32 2222 225566666 4458888887889999996 99999998653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0094 Score=56.42 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=84.3
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-------CCcEEEEEc-CCeEEEEeCC--CcEEEEeccCcC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 269 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-------dg~~laS~s-D~tIklWd~~--G~~l~tl~gh~~ 269 (389)
.+.+.+.|++++=.+++..+ ..+.+.-|-. -+..++.|. ||.|.+|+.+ |........-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k---------~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK---------ESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhh---------hhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 35567788888877775322 2222222322 234456665 9999999875 543221111111
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
. ++..|..-.++.+.-+++. |+-||.|+++-++.+.....|+.
T Consensus 103 ~----i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 S----IDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred c----ceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 1 1234444445555555544 69999999999999888888873
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEe--cCCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSg--s~D~tIrlW~~ 389 (389)
.++..+..+--++.|+++ |.|.++|.|+.
T Consensus 146 -----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -----------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 355666667778888888 89999999974
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.028 Score=59.84 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 230 TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
-+.-+.|+|--.++|.+. +|.|-+..++-+.+.++.-|.-.+ ..++++-|||+.||.|-.| |+|
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v----~~sL~W~~DGkllaVg~kd-----------G~I 86 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENV----TASLCWRPDGKLLAVGFKD-----------GTI 86 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCcc----ceeeeecCCCCEEEEEecC-----------CeE
Confidence 456678999999999998 998888888877788887554442 2499999999999999875 999
Q ss_pred EEEeCCCCeEEEE
Q 016446 309 NVSSILTGKCLAK 321 (389)
Q Consensus 309 klWd~~tg~~l~t 321 (389)
+|=|+++|..+..
T Consensus 87 ~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 87 RLHDVEKGGRLVS 99 (665)
T ss_pred EEEEccCCCceec
Confidence 9999999988866
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1 Score=49.80 Aligned_cols=199 Identities=9% Similarity=0.042 Sum_probs=122.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEecC--Cc-EEEEEEcCC-ceEEEEecCCCCe--eEEEEEcCC----
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KH-VQEIKISPG-IMLLIFNRSSSHV--PLKILSIED---- 174 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~~--~~-V~~vafS~g-~~la~~~~~s~d~--tiklWd~~t---- 174 (389)
-.|+ +.+..+|-|+.||.|-+-+ .+. .++.++. .. |..+-.-++ ..|++-..+..-+ .+|+|+++.
T Consensus 29 sc~~-s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCS-SSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEc-CCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3566 7888999999888764444 444 4455552 23 333333333 3555444333212 699999873
Q ss_pred --CeEEEEEe--ec-----CCceeEEEEEecCCCeEEEEeCCCcEEEE--ECC--CCeEEEEcccCCCceEEEEEcCCCc
Q 016446 175 --GTVLKVFY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQIL--DVR--NAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 175 --G~~l~tl~--~~-----~~~~~~v~f~~~~~~~l~~~s~D~tIklW--d~~--tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
-+|+.+.. .| ..+...++.+ .+-..++.|=.||.|-++ |+. -|...........+|+.++|..|++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 34663222 21 1233455555 445677777799999888 322 1333333334556999999999999
Q ss_pred EEEEEc-CCeEEEEeCCCcE--EEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 242 LFLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.++=.. -..|+++.++|+- ++++..|... +++..|++--. +++.++ .-+.++|...-+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~~-------------e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAGS-------------EFLYFYDSDGRG 246 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEecC-------------ceEEEEcCCCcc
Confidence 843334 7789999998664 7778777655 78889988554 555543 578888866444
Q ss_pred EEEEec-CCC
Q 016446 318 CLAKIN-ATN 326 (389)
Q Consensus 318 ~l~tl~-gH~ 326 (389)
.-.++. ||.
T Consensus 247 ~cfaf~~g~k 256 (933)
T KOG2114|consen 247 PCFAFEVGEK 256 (933)
T ss_pred eeeeecCCCe
Confidence 444555 665
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.047 Score=59.41 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=92.8
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecC---------CCeEEE--EeCCCcE
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF---------NEKLLV--KQENENL 210 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~---------~~~l~~--~s~D~tI 210 (389)
+.-.++.++|++.+|.++.. -|-+=|..+-|.+++++.|...|..|.|.+-. ...++. +-..|.|
T Consensus 16 sN~~A~Dw~~~GLiAygshs----lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSHS----LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccceEEEecCc----eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 45678889999999988544 68899999999999999999999999997321 112333 3467999
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEcC---CCc-EEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFLY---ENQ-LFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fsp---dg~-~laS~s-D~tIklWd~~-G~~l~t 263 (389)
-|||+..+..+..+..|.+++..+.|-| +.+ +|+.-. -.+|-|||.. |+.+-.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 9999999999999999999999998864 563 444444 8899999986 887643
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0025 Score=69.83 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=70.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE-----------cCCCcEEEEEc-CCeEEEEeCC--Cc----EEE
Q 016446 201 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNFR--GE----LVT 262 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f-----------spdg~~laS~s-D~tIklWd~~--G~----~l~ 262 (389)
+-.+-.+++|+|-+..+.+. ..+++|..++..++| ||||+.||.+. ||.++.|.+. |+ |+.
T Consensus 198 ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh 276 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH 276 (1283)
T ss_pred eeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh
Confidence 33344789999988755443 667789988887776 99999999998 9999999873 64 677
Q ss_pred EeccCcCCcCCCCeeEEEECCC---------CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 263 SFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpd---------G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
..+.|...- .|..+ |..+ =+++++++.- ..-+|+|.-..=+|+
T Consensus 277 ewkphd~~p---~vC~l-c~~~~~~~v~i~~w~~~Itttd~----------nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 277 EWKPHDKHP---RVCWL-CHKQEILVVSIGKWVLRITTTDV----------NREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCCCCCC---ceeee-eccccccCCccceeEEEEecccC----------CcceeEeeccchhhh
Confidence 777777321 13333 3322 1234444332 256888886666665
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0013 Score=69.63 Aligned_cols=193 Identities=17% Similarity=0.117 Sum_probs=121.9
Q ss_pred ccEEEEEecCceEEEEeccccee--eeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 89 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~--l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~ 89 (389)
+.++|++.-+|.|-|=....-.. --+.+++ +..-.++||++-. +.||.+-.-.-.| -.++|||+.++-.+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~-ar~Ct~lAwneLDtn~LAagldkhrnd------s~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGY-ARPCTSLAWNELDTNHLAAGLDKHRND------SSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccc-cccccccccccccHHHHHhhhhhhccc------CCccceecccccCC
Confidence 46889999999998876532111 1234444 5788899999973 3344422111222 34567888777221
Q ss_pred -CcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-CeEEEEecCCcEEEEEEcC--CceEEEEecCCCCe
Q 016446 90 -SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHV 165 (389)
Q Consensus 90 -~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g~~l~tl~~~~V~~vafS~--g~~la~~~~~s~d~ 165 (389)
+...+|..+....+-++.+. .|.++|.+|...+.|++.|+.. ......+....|..+.+.| +.++++. .|+
T Consensus 143 Pke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~dg 217 (783)
T KOG1008|consen 143 PKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SDG 217 (783)
T ss_pred CccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----ccC
Confidence 12234443344444568887 7899999999999999999852 2222333456788888886 7788643 367
Q ss_pred eEEEEEcC-C-CeEEEEEeecC----CceeEEEEEecCCCeEEEEe-CCCcEEEEECCC
Q 016446 166 PLKILSIE-D-GTVLKVFYHLL----HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 217 (389)
Q Consensus 166 tiklWd~~-t-G~~l~tl~~~~----~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t 217 (389)
-|-+||.. . -..++++.... .....+++.|...+.+++-+ ..+||+++|+..
T Consensus 218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 89999931 1 11222222111 23688999876678888866 569999999873
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.085 Score=57.57 Aligned_cols=138 Identities=8% Similarity=0.086 Sum_probs=89.8
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCC------ceEEEEecCCCCeeEEEEEcC-CCeEEE-EE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG------IMLLIFNRSSSHVPLKILSIE-DGTVLK-VF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g------~~la~~~~~s~d~tiklWd~~-tG~~l~-tl 181 (389)
-+|.++||||.||+|.+-.+-+.+...++. +..+.+|+++|. .++++++.. + +-|..-. =|..-. .+
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~a---g-lvL~er~wlgnk~~v~l 156 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMA---G-LVLSERNWLGNKDSVVL 156 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcc---e-EEEehhhhhcCccceee
Confidence 579999999999999999999888776665 678999999974 455554222 2 3332100 001000 23
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE------EEEcCCCcEEEEEcCCeEEEEe
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA------FIFLYENQLFLTFRNRTVAVWN 255 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s------v~fspdg~~laS~sD~tIklWd 255 (389)
..--+.+.+|.+. +..||=++.+| ||++|..+++.+..++.-...++. +.|.++.+ |+=|.-.+|+|-.
T Consensus 157 ~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICS 231 (846)
T ss_pred ecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEE
Confidence 3334788888885 55555566655 799999998877665444345544 44555554 5557756787777
Q ss_pred CC
Q 016446 256 FR 257 (389)
Q Consensus 256 ~~ 257 (389)
++
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 64
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.8 Score=48.01 Aligned_cols=53 Identities=6% Similarity=0.145 Sum_probs=38.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec-------CCcEEEEEEcCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-------DKHVQEIKISPG 152 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~-------~~~V~~vafS~g 152 (389)
.+.+|+.++|. |||++|++--..|.|++++..++. .+..+. ......|||+|+
T Consensus 28 GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 46689999998 899999876556999999866554 232222 246889999975
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.86 Score=46.05 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCcEEEEEcC--------------------CeEEEEeCCCcEEEEe-ccCcCCcCCCCeeEEEECCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFRN--------------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~sD--------------------~tIklWd~~G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
......++|.|||.+.++-++ +.|--+|.+|..+..+ .|+.. .+.++|+|+|+
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~ 196 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGD 196 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCC
Confidence 345778999999998775542 2333344454333333 34433 37999999999
Q ss_pred EEEEEe
Q 016446 287 LIISYC 292 (389)
Q Consensus 287 ~laS~s 292 (389)
++++-.
T Consensus 197 l~~tdn 202 (367)
T TIGR02604 197 VFFCDN 202 (367)
T ss_pred EEEEcc
Confidence 988744
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.8 Score=41.74 Aligned_cols=212 Identities=10% Similarity=0.054 Sum_probs=123.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCC------CCe-EEEEecC-------CcEEEEEEcCCceEEEEe-----
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKISPGIMLLIFN----- 159 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~------~g~-~l~tl~~-------~~V~~vafS~g~~la~~~----- 159 (389)
.+..++.++|+ |.|..-++...-++..|+|.+ ..+ ++-++.. .....++|+.++-+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 34456789998 899999999889999999986 222 3455541 256777777432221111
Q ss_pred -----cCCCCeeEEEEEcCCCeEE---E--EEe-ecCCce-eEEEEEec-CCCeEEEEe-CCCcEEEEECCCCeEEEEcc
Q 016446 160 -----RSSSHVPLKILSIEDGTVL---K--VFY-HLLHRN-KKVDFIEQ-FNEKLLVKQ-ENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 160 -----~~s~d~tiklWd~~tG~~l---~--tl~-~~~~~~-~~v~f~~~-~~~~l~~~s-~D~tIklWd~~tg~~~~~l~ 225 (389)
..++|+||.=|...-+... . .+. ...+.+ +-+++..- -+.+|-++- ..++|.++|-.=... .+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-PL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-cC-C
Confidence 1255688888885433331 1 111 111333 44444311 134555543 678888887532221 11 1
Q ss_pred cC-CCceEEEEEcC------CCcEEEEE-------------c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC-
Q 016446 226 TE-FMTPSAFIFLY------ENQLFLTF-------------R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS- 283 (389)
Q Consensus 226 gh-~~~v~sv~fsp------dg~~laS~-------------s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp- 283 (389)
+- .++---.-|.| .+++.++- . -|-|-++|.+|.+++.|. +..+-+ . =|.|+.-|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~LN-a-PWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGRLN-A-PWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCccc-C-CceeeeChh
Confidence 10 00000001111 34444443 2 468999999999999985 222211 1 27888866
Q ss_pred -----CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 284 -----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 284 -----dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
.|++|+---- ||+|..+|..+|+.+..|+.-.+
T Consensus 255 ~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 255 SFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 6888886533 69999999999999999987653
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.73 Score=50.60 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=120.6
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
+.+|+ ++.+|-|.++|.|.+.+. .|.+-..+..... -..|.++|++ +.|++|-+-.+-|++...++..+
T Consensus 44 ~~av~---~~~~~~GtH~g~v~~~~~-~~~~~~~~~~s~~----~~~Gey~asC---S~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 44 CCAVH---DKFFALGTHRGAVYLTTC-QGNPKTNFDHSSS----ILEGEYVASC---SDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred HHHhh---cceeeeccccceEEEEec-CCccccccccccc----ccCCceEEEe---cCCCcEEEeeccCCccceeEecC
Confidence 46775 789999999999999996 5554222212112 1269999876 66789999999999988888754
Q ss_pred CCceeEEEEEecC-----CCeEEEEeCCCcEEEEECC-CCeEEE-EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 016446 185 LHRNKKVDFIEQF-----NEKLLVKQENENLQILDVR-NAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 257 (389)
Q Consensus 185 ~~~~~~v~f~~~~-----~~~l~~~s~D~tIklWd~~-tg~~~~-~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~ 257 (389)
-++.+|++. |+ ..+.++|+.-| +-|..-. =|.... .+..-.+.|.+|.| .|.++|=++|--||++|..
T Consensus 113 -rpiksial~-Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~ 187 (846)
T KOG2066|consen 113 -RPIKSIALH-PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTP 187 (846)
T ss_pred -CcceeEEec-cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEecc
Confidence 788999998 43 35777788777 7666422 122222 34556678888866 5889998887779999996
Q ss_pred -CcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 258 -GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 258 -G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
++.+..++- |...-++-.-..+.|.++-+ |+-|=. .+|+|-.++
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~------------d~v~i~~I~ 233 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG------------DSVKICSIK 233 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC------------CeEEEEEEe
Confidence 666655542 22211111113466666555 555543 489999887
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.9 Score=45.90 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred cEEEEECCC--CeE--EEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCC------c---EEEEeccCc--CCcCC
Q 016446 209 NLQILDVRN--AEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 273 (389)
Q Consensus 209 tIklWd~~t--g~~--~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G------~---~l~tl~gh~--~~~~~ 273 (389)
.|.+++-.. |.. .+++...-..+..++|.++| ++++..+...++.|.+| + ++..|.... ..+
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-- 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-- 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc--
Confidence 666665443 332 34444445567899999999 77765566666667643 2 223343310 001
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 016446 274 CNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s 292 (389)
..+.++|.|||++.++-+
T Consensus 125 -~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 -SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -cccCceECCCCCEEEecc
Confidence 147899999999988754
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.41 Score=53.26 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCc-eEEEEEcC--------CCcEEEEEcCCeEEEEeCC--CcEEEEeccCcCCcCC
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPD 273 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~-v~sv~fsp--------dg~~laS~sD~tIklWd~~--G~~l~tl~gh~~~~~~ 273 (389)
.....+.--|+++|+.++...-|.+. |.. |-| ..+.++.-+++.+-.||.+ |..+..-+.|+-. ..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~-~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS-SK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc-cC
Confidence 46688888999999999999888765 444 444 2355665678888899985 5433222334321 11
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccce
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYI 352 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
..-.++|=+.+|.+.+ ||. +|-|||+| ..|+--.| |.|-
T Consensus 578 ~~Fs~~aTt~~G~iav-gs~-----------~G~IRLyd-~~g~~AKT~lp~l--------------------------- 617 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAV-GSN-----------KGDIRLYD-RLGKRAKTALPGL--------------------------- 617 (794)
T ss_pred CCceEEEecCCceEEE-EeC-----------CCcEEeec-ccchhhhhcCCCC---------------------------
Confidence 2357888888887555 554 59999999 55543222 2221
Q ss_pred ecccccccCCEEEEEECCCCCEEEEecC
Q 016446 353 RSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 353 ~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
| .+|..|.-+.||++|+....
T Consensus 618 ----G---~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 618 ----G---DPIIGIDVTADGKWILATCK 638 (794)
T ss_pred ----C---CCeeEEEecCCCcEEEEeec
Confidence 1 69999999999999887663
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.1 Score=47.57 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=128.1
Q ss_pred cEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 5 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+..+--++..||.++-+|.|-+.+.. =+.++.++.+....|-.+ +.-++ ..|+++..+...+ -..+++|++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~n-----p~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGN-----PVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCC-----ceEEEEecc
Confidence 344444458999999999999888863 566688888864423333 33333 5888876554323 136777887
Q ss_pred ccCCCCC------cceeEeeecc--cCc-eeEEEecCCCeEEEEecCCCeEEEEeCC----CCeEE-EEec-CCcEEEEE
Q 016446 84 RRGKPDS------GFALFESESL--KWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML-YSIS-DKHVQEIK 148 (389)
Q Consensus 84 ~~g~~~~------~~~l~~~~~~--~~~-~~v~Fs~pdG~~Las~s~D~tiklWdl~----~g~~l-~tl~-~~~V~~va 148 (389)
..-+.+. ..++|++... ..| .+++.| .+=+.+|.|=.||.|-+..=. -|... +... .+.|..++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 4332221 1123431111 122 337887 678899999999999887411 12211 1222 36899999
Q ss_pred Ec-CCce--EEEEecCCCCeeEEEEEcCCCeE--EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE
Q 016446 149 IS-PGIM--LLIFNRSSSHVPLKILSIEDGTV--LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 223 (389)
Q Consensus 149 fS-~g~~--la~~~~~s~d~tiklWd~~tG~~--l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~ 223 (389)
|- |++. +|++ . ..|+++.+. |+. ++++..|+...+...|+++.++. +...+.-+-++|.....+.-+
T Consensus 179 ~~~d~~s~lFv~T--t---~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qf--Ica~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 179 LRSDGKSVLFVAT--T---EQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQF--ICAGSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EecCCceeEEEEe--c---ceeEEEEec-CCCcceeeeccCCccceeeecCCCCccE--EEecCceEEEEcCCCcceeee
Confidence 99 7776 4433 2 368999987 665 67788888888999997543433 333455677888764333333
Q ss_pred cc-cCCCc
Q 016446 224 SR-TEFMT 230 (389)
Q Consensus 224 l~-gh~~~ 230 (389)
+. ||...
T Consensus 251 f~~g~kk~ 258 (933)
T KOG2114|consen 251 FEVGEKKE 258 (933)
T ss_pred ecCCCeEE
Confidence 33 65543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.3 Score=43.80 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=96.9
Q ss_pred EEEecCCCeE-EEEecCCCeEEEEeCCCCeEEEEe------c-----CCcEEEEEEc--CCceEEEEecCCCCeeEEEEE
Q 016446 106 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSI------S-----DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 106 v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l~tl------~-----~~~V~~vafS--~g~~la~~~~~s~d~tiklWd 171 (389)
-+|..+||++ .|..+.+| +++... | ...=++|+|- ||+.. .++|
T Consensus 40 saf~~~dgs~g~a~~~eaG----------k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~------------~vfD 97 (366)
T COG3490 40 SAFDARDGSFGAATLSEAG----------KIVFATALPARGHGIAFHPALPRAVAFARRPGTFA------------MVFD 97 (366)
T ss_pred eeeeccCCceeEEEEccCC----------ceeeeeecccccCCeecCCCCcceEEEEecCCceE------------EEEC
Confidence 4677788886 45555444 444322 1 1233566666 66543 4677
Q ss_pred cCCCeEEEEEeecCCc-e-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCe-EEEEcccCCCceEEEEEcCCCcEE
Q 016446 172 IEDGTVLKVFYHLLHR-N-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~-~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~-~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
..+++.+.++....++ . --=.|+ |||..|.++-.| |-|-|||...+- .+-.+.+|.-....+.+.+||++|
T Consensus 98 ~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 98 PNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred CCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEE
Confidence 7788877776421111 1 112355 778888776533 889999998543 244577888888899999999999
Q ss_pred EEEcCC-------------------eEEEEe-CCCcEEEEeccCcCC--cCCCCeeEEEECCCCCEEEE
Q 016446 244 LTFRNR-------------------TVAVWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 244 aS~sD~-------------------tIklWd-~~G~~l~tl~gh~~~--~~~~~v~sv~fSpdG~~laS 290 (389)
+-+.-| .+-|-| .+|+++ +.|..+ .....|.-+++-+||+.++-
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~li---ekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI---EKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchh---hhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 876421 122334 346653 223322 11123788999999998774
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.57 Score=46.80 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCcEEEEEcCCeEEEEeCCCcE---EEEeccCcCCcCCCCeeEEEECCC----CCEEEEEec
Q 016446 230 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 293 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~sD~tIklWd~~G~~---l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s~ 293 (389)
.+++++|.|||++|++-..|.|++.+.+|.. +..+.. ...........++|+|+ +.+.++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~-v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPE-VFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TT-TBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccc-ccccccCCcccceeccccCCCCEEEEEEEc
Confidence 5789999999999998789999999966665 333321 00001123689999995 777777763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.07 E-value=5.8 Score=42.35 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-C-----cEEE-EEEcCCceEEEEecC---CCCeeEEEEEcCCC
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQE-IKISPGIMLLIFNRS---SSHVPLKILSIEDG 175 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~-----~V~~-vafS~g~~la~~~~~---s~d~tiklWd~~tG 175 (389)
+++. ++++ ..++.|+.+.--|.++|+.+..... + .+.+ -.+. +.++.++... ..++.|.-.|++||
T Consensus 116 ~av~--~~~v-~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 116 VALY--DGKV-FFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred ceEE--CCEE-EEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCC
Confidence 4554 4544 4467788888889999998865541 1 1111 1122 4455454322 13578999999999
Q ss_pred eEEEEEeecC-------------------------------Ccee-EEEEEecCCCeEEEEe-C----CC----------
Q 016446 176 TVLKVFYHLL-------------------------------HRNK-KVDFIEQFNEKLLVKQ-E----NE---------- 208 (389)
Q Consensus 176 ~~l~tl~~~~-------------------------------~~~~-~v~f~~~~~~~l~~~s-~----D~---------- 208 (389)
+.+-++..-. +.++ ..++- +.-+.+..+. . ++
T Consensus 192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~ 270 (527)
T TIGR03075 192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYT 270 (527)
T ss_pred ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccc
Confidence 9997754210 0111 11221 1123444432 2 22
Q ss_pred -cEEEEECCCCeEEEEcccCCCceEE---------EEEcCCCc---EEEEEc-CCeEEEEeCC-CcEE
Q 016446 209 -NLQILDVRNAELMEVSRTEFMTPSA---------FIFLYENQ---LFLTFR-NRTVAVWNFR-GELV 261 (389)
Q Consensus 209 -tIklWd~~tg~~~~~l~gh~~~v~s---------v~fspdg~---~laS~s-D~tIklWd~~-G~~l 261 (389)
.|---|++||+..-.++...+.++. +....||+ .++.+. +|.+-+-|.. |+++
T Consensus 271 ~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 271 SSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5667799999986554432222222 22234776 777777 9999999996 9987
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=58.36 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=63.2
Q ss_pred CeEEEEeCCCcEEEEECCCCeEE--EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 199 EKLLVKQENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~--~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.-+++++.-|.+-+-|+. |.+. ..-+.-+.+|.+++|+.||++++.|- +|.|++||.+ ++.++.+..|+.++.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~-~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t-- 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMT-GNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT-- 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhh-cccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc--
Confidence 345556666666666653 3221 11122346899999999999999996 9999999997 899999999988753
Q ss_pred CeeEEEECCCCCEEEEE
Q 016446 275 NTNNIYITSDQDLIISY 291 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~ 291 (389)
+|.-+-...++..+.++
T Consensus 177 ~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred eEEEEEEeCCCcEEEEc
Confidence 34555555666667765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.8 Score=36.77 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred eeEEEEEecCC---CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEE
Q 016446 188 NKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 263 (389)
Q Consensus 188 ~~~v~f~~~~~---~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~t 263 (389)
|.++++...++ ..|++||+|..||+++=. +++..+.. ...|.+++-.+.++ |+.+- +|||.+++-.-++-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeee
Confidence 34555554443 478999999999999753 55554443 34678887777755 66665 9999999875554443
Q ss_pred eccCc
Q 016446 264 FEDHL 268 (389)
Q Consensus 264 l~gh~ 268 (389)
=..|+
T Consensus 78 KSK~~ 82 (111)
T PF14783_consen 78 KSKNQ 82 (111)
T ss_pred ccCCC
Confidence 33343
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.71 Score=51.21 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=67.0
Q ss_pred EEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 167 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
|.|+- .||+.-+-.+.. -++.++.|. | .+.+++ |=+-+.+.+|+..+.+.-.....|..++.-+.|||+|..|.|
T Consensus 43 VtIfa-dtGEPqr~Vt~P-~hatSLCWH-p-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t 118 (1416)
T KOG3617|consen 43 VTIFA-DTGEPQRDVTYP-VHATSLCWH-P-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT 118 (1416)
T ss_pred EEEEe-cCCCCCcccccc-eehhhhccC-h-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE
Confidence 44443 678865443321 234567776 2 344444 447799999999999998889999999999999999999999
Q ss_pred Ec-CCeEEEEeCC--Cc
Q 016446 246 FR-NRTVAVWNFR--GE 259 (389)
Q Consensus 246 ~s-D~tIklWd~~--G~ 259 (389)
+. =|.+.+|..+ |+
T Consensus 119 ~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 119 LDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred cCCCceeEEEEeeeccc
Confidence 98 8999999875 65
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.3 Score=43.87 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcE-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 227 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
-...+.+++|.++|.+++.+.+|.+ +|..+ |+- +..+.-.... ..+.+++|.+|++.+++|.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~---~~l~~v~~~~d~~~~a~G~-------- 346 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRG---FGILDVGYRSKKEAWAAGG-------- 346 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCC---cceEEEEEcCCCcEEEEEC--------
Confidence 3456889999999999998888887 66654 642 2222211111 1268999999999999873
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
.|.|.... .-|+.-+..+.-.. . -...+.+.|.++++-.++|.
T Consensus 347 ----~G~v~~s~-D~G~tW~~~~~~~~----------------------------~---~~~ly~v~f~~~~~g~~~G~- 389 (398)
T PLN00033 347 ----SGILLRST-DGGKSWKRDKGADN----------------------------I---AANLYSVKFFDDKKGFVLGN- 389 (398)
T ss_pred ----CCcEEEeC-CCCcceeEccccCC----------------------------C---CcceeEEEEcCCCceEEEeC-
Confidence 47776654 45665444432110 0 03688999999988777765
Q ss_pred CCcEEE
Q 016446 381 HGLVHV 386 (389)
Q Consensus 381 D~tIrl 386 (389)
+|.|--
T Consensus 390 ~G~il~ 395 (398)
T PLN00033 390 DGVLLR 395 (398)
T ss_pred CcEEEE
Confidence 666543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.98 Score=50.35 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=90.3
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCc-eeEEEE----EecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccC----CCceE
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHR-NKKVDF----IEQFNEKLLVKQENENLQILDVRN-AELMEVSRTE----FMTPS 232 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~-~~~v~f----~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh----~~~v~ 232 (389)
....+.--|+++|+.+.....|-.. +..++= ..-.++....|=.+..+-.||.+- |..+-.-..| .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 3467888899999999998855332 333321 111245566677889999999985 3322221222 23456
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCCCcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 233 AFIFLYENQLFLTFRNRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 233 sv~fspdg~~laS~sD~tIklWd~~G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
++|-+.+|.+.+.+.+|-|||+|.-|..-+| |.|=..+ |..|..|.||++|+..|. ..+-|.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc~------------tyLlLi 644 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATCK------------TYLLLI 644 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEeec------------ceEEEE
Confidence 7777888975544449999999976654333 4444445 799999999999998874 688888
Q ss_pred eCC
Q 016446 312 SIL 314 (389)
Q Consensus 312 d~~ 314 (389)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 853
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=54.17 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=53.3
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE-EEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~-sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
.+..+.++ |.-+.||..-++|.|-|.-+. -+.+-++.-|...+. +++|-|||++||-|- ||||+|-|++ |..+..
T Consensus 22 ~i~~~ewn-P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWN-PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEc-CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34555665 445677777777777555554 333444444555555 999999999999996 9999999997 887765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.21 Score=53.95 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
...|.-=++.-.+++++-|+ -|.+-|++..|...+ +.+|-.. .+....+|++..+.|.|+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-----~~~~~~vs~~e~lvAagt~~---------- 97 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-----ITCVRSVSSVEYLVAAGTAS---------- 97 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-----eEEEEEecchhHhhhhhcCC----------
Confidence 33455556788899999997 899999999854333 3333222 25677889999988887653
Q ss_pred CCeEEEEeCCCCeEE-EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 305 AGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 305 D~tIklWd~~tg~~l-~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
|-|-+.-++.++.- ..+-.| .+..|-..|+++.||+||..+++|..-|+
T Consensus 98 -g~V~v~ql~~~~p~~~~~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 98 -GRVSVFQLNKELPRDLDYVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred -ceEEeehhhccCCCcceeecc-----------------------------ccccCCceEEEEEecccccEEeecCCCce
Confidence 77877776543211 111111 11112369999999999999999999999
Q ss_pred EEE
Q 016446 384 VHV 386 (389)
Q Consensus 384 Irl 386 (389)
|.+
T Consensus 148 v~~ 150 (726)
T KOG3621|consen 148 VVL 150 (726)
T ss_pred EEE
Confidence 865
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=56.91 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEE---EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTML---YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l---~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
+..+|.|+.-|-|-+.|+ +|.+- +..+ +..|.+++|+ +|.+++.+- .++-|++||+++++.++.+..|+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~-~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDM-TGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhh-hcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCc
Confidence 456788888888888887 44421 1122 4689999999 888887663 4478999999999999999999888
Q ss_pred eeEEEEEe
Q 016446 188 NKKVDFIE 195 (389)
Q Consensus 188 ~~~v~f~~ 195 (389)
...|-++-
T Consensus 175 ~t~vi~v~ 182 (1206)
T KOG2079|consen 175 VTGVIFVG 182 (1206)
T ss_pred cceEEEEE
Confidence 88887763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=6.7 Score=39.03 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=111.6
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec----C---CcEEEEEEcCCceEEEEecC------CC-CeeEEEEE
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----D---KHVQEIKISPGIMLLIFNRS------SS-HVPLKILS 171 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~----~---~~V~~vafS~g~~la~~~~~------s~-d~tiklWd 171 (389)
..++ +.|+++++ +.-+.+++++++..+..+. + ..-+++.+.|.+.+..+... +. -.+-.||-
T Consensus 72 ~~~d-~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr 147 (307)
T COG3386 72 ALID-AGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYR 147 (307)
T ss_pred eeec-CCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEE
Confidence 5665 56655553 2456788877676643332 1 34567778843344343322 10 11225666
Q ss_pred cC-CCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--CeE-----EEEcccCCCceEEEEEcCCCcE
Q 016446 172 IE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AEL-----MEVSRTEFMTPSAFIFLYENQL 242 (389)
Q Consensus 172 ~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t--g~~-----~~~l~gh~~~v~sv~fspdg~~ 242 (389)
+. .|..++-+..+...-+.++|+ ||+..+..+ +..+.|.-+++.- |.. ...+..+...+-.++.-.+|.+
T Consensus 148 ~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 148 VDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred EcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 66 678888777665666999998 778777776 5678888887752 221 2222334455666667778888
Q ss_pred EEEEc-CC-eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE-CCCCCEEEEEec
Q 016446 243 FLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 293 (389)
Q Consensus 243 laS~s-D~-tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f-SpdG~~laS~s~ 293 (389)
.+++- +| -|..|+.+|+++...+-.... +.+++| .|+.++|...+.
T Consensus 227 w~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 227 WVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEEEEec
Confidence 87554 54 899999999999888766433 456666 667777776654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.2 Score=40.70 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=86.7
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEE-EECCCCe-EEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 262 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIkl-Wd~~tg~-~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~ 262 (389)
+.+..+++. + ++.+++.+..|.+.. +|- .|+ -.....+-...++++++.|++++++.+..|.+++=..+ |+--+
T Consensus 173 g~~~~i~~~-~-~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRS-P-DGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEEC-C-CCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 456777775 4 345555566665542 222 222 22222334457899999999999888878887543344 55332
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
...-+.. .+...+.+++|.|+++.++.|. +|.|. .....|+--+.++.+..
T Consensus 250 ~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~------------~G~v~-~S~d~G~tW~~~~~~~~--------------- 300 (334)
T PRK13684 250 KPIIPEI-TNGYGYLDLAYRTPGEIWAGGG------------NGTLL-VSKDGGKTWEKDPVGEE--------------- 300 (334)
T ss_pred cccCCcc-ccccceeeEEEcCCCCEEEEcC------------CCeEE-EeCCCCCCCeECCcCCC---------------
Confidence 2221100 0001267899999999888752 36553 33344554444432220
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
. ....+.+.|-.+++.++.| ..|+|--|
T Consensus 301 -------------~---~~~~~~~~~~~~~~~~~~G-~~G~il~~ 328 (334)
T PRK13684 301 -------------V---PSNFYKIVFLDPEKGFVLG-QRGVLLRY 328 (334)
T ss_pred -------------C---CcceEEEEEeCCCceEEEC-CCceEEEe
Confidence 0 0367888888888777755 46666444
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.9 Score=45.19 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=41.8
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
+++...-...+.++|.|||++|++-. .|.|++++.. +. .+..+..-...........|+|+||=
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34444556889999999999999998 6999999865 32 23223210000001236899999984
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.01 E-value=6 Score=37.95 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=89.5
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+.+.+.||||+.+|.+.. .++ .-.|+-...+.. ...+.. ......-.|+ ++|.+.+....+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~--~~~-------~~~L~~~~~~~~--~~~~~~---g~~l~~PS~d-~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE--GDG-------GRSLYVGPAGGP--VRPVLT---GGSLTRPSWD-PDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEE--cCC-------CCEEEEEcCCCc--ceeecc---CCcccccccc-CCCCEEEEEcCCCce
Confidence 6899999999999988762 222 122333333332 111211 1122346887 889998888888888
Q ss_pred EEEe-CCCCeEE-EEec--C-C-cEEEEEEc-CCceEEEEecCCCCeeEEEEEcC---CC--eE----EEEEeecCCcee
Q 016446 126 KVFD-LKNYTML-YSIS--D-K-HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE---DG--TV----LKVFYHLLHRNK 189 (389)
Q Consensus 126 klWd-l~~g~~l-~tl~--~-~-~V~~vafS-~g~~la~~~~~s~d~tiklWd~~---tG--~~----l~tl~~~~~~~~ 189 (389)
+++. ..+|+.. ..+. . . .|.++++| ||.++|.-.....+..|.+=-+. .| .. +.........+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 8884 4455532 2222 1 2 89999999 79999888766555666654332 34 11 122222235678
Q ss_pred EEEEEecCCCeEEE-Ee-CCCcEEE-EEC
Q 016446 190 KVDFIEQFNEKLLV-KQ-ENENLQI-LDV 215 (389)
Q Consensus 190 ~v~f~~~~~~~l~~-~s-~D~tIkl-Wd~ 215 (389)
.++|. + +..|+. +. .+..+.. ..+
T Consensus 170 ~v~W~-~-~~~L~V~~~~~~~~~~~~v~~ 196 (253)
T PF10647_consen 170 DVAWS-D-DSTLVVLGRSAGGPVVRLVSV 196 (253)
T ss_pred eeeec-C-CCEEEEEeCCCCCceeEEEEc
Confidence 89997 3 444544 43 5555554 444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.8 Score=40.96 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=85.1
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEE---EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe----
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT---- 176 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l---~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~---- 176 (389)
+..+ +||.+++.+..-.-++-|| .|+.. .... ...+.+++|. +|..++++. . +.+ +|....|+
T Consensus 244 v~~~-~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~---G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 244 VNRS-PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-G---GGL-YVSKGTGLTEED 315 (398)
T ss_pred EEEc-CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC-C---ceE-EEecCCCCcccc
Confidence 4555 7888888766555566666 44421 2222 4678999999 566666542 2 343 55656665
Q ss_pred -EEEEEeec--CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc---ccCCCceEEEEEcCCCcEEEEEcCCe
Q 016446 177 -VLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFRNRT 250 (389)
Q Consensus 177 -~l~tl~~~--~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l---~gh~~~v~sv~fspdg~~laS~sD~t 250 (389)
.+..+... ...+..+.|. +++.+.+.+.+|.+.... ..|+.-+.. .+-....++|.|.++++.+++|.+|.
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred cceeecccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 23333311 1235777775 366777888888877764 345542222 22345688999999999999998887
Q ss_pred EEE
Q 016446 251 VAV 253 (389)
Q Consensus 251 Ikl 253 (389)
|--
T Consensus 393 il~ 395 (398)
T PLN00033 393 LLR 395 (398)
T ss_pred EEE
Confidence 643
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.78 Score=48.50 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred eEEE-EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc--------EEEEEcCCeEEEEeCC--Cc-EEEEeccC
Q 016446 200 KLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--------LFLTFRNRTVAVWNFR--GE-LVTSFEDH 267 (389)
Q Consensus 200 ~l~~-~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~--------~laS~sD~tIklWd~~--G~-~l~tl~gh 267 (389)
.|+. +..-..++=-|++.|+.+....-|.+ |.-+.|.||++ .|+--+|+.|-=||.+ |. .|.--++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3444 44556777789999999999988887 77888888754 4555568889899984 65 45555666
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCcccc
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+-.. ...-.+.+=+.+|-+ |.||. +|.|||+| ..|..-.| |+|--
T Consensus 426 qy~~-k~nFsc~aTT~sG~I-vvgS~-----------~GdIRLYd-ri~~~AKTAlPgLG-------------------- 471 (644)
T KOG2395|consen 426 QYST-KNNFSCFATTESGYI-VVGSL-----------KGDIRLYD-RIGRRAKTALPGLG-------------------- 471 (644)
T ss_pred cccc-ccccceeeecCCceE-EEeec-----------CCcEEeeh-hhhhhhhhcccccC--------------------
Confidence 6421 112356666677764 44554 69999999 46665444 33322
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
++|.-|.-+.||++|+...
T Consensus 472 --------------~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 472 --------------DAIKHVDVTADGKWILATC 490 (644)
T ss_pred --------------CceeeEEeeccCcEEEEec
Confidence 5899999999999887665
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.55 E-value=6.2 Score=39.23 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCcEEEEEc-C------CeEEEEeCCCcEEEEec---cC-------cCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 230 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s-D------~tIklWd~~G~~l~tl~---gh-------~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
-.+++++.++|.+++|.- + ..|.-.+.+|+.++.+. .. .....+....+++++|||++|..+-
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 567899999999999997 8 88888888888876652 11 2233445578999999999777765
Q ss_pred c
Q 016446 293 K 293 (389)
Q Consensus 293 ~ 293 (389)
+
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 4
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=7.4 Score=38.16 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=79.4
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEe-cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl-~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
-.++..||+.+.++-=|.++|++...- -+..+.+=|.==|++++.+.-. +-+.+.+..||+....|... +.+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~---g~lYfl~~~tGs~~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYS---GGLYFLCVKTGSQIWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEcc---CcEEEEEecchhheeeeeeh-hhhccc
Confidence 356778999999999999999987543 3566655554446667676544 56888899999777776632 445444
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVS 224 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l 224 (389)
+-..++++.|-.++.|++...-|.++..|+-.+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 444467889999999999999999998886654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.9 Score=40.52 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=103.1
Q ss_pred CceEEEEecccc-eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC----CCcceeeee------eeEeEeccCCCCC
Q 016446 22 SGVCAAFSRETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD----NFSSLKCRS------TKIEYIRRGKPDS 90 (389)
Q Consensus 22 ~gtiklW~~~tg-~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~----d~~~l~~~~------~~l~~i~~g~~~~ 90 (389)
-|.|-+||...+ +.+-.+..|. -.=..|.+.+||.+|+.+. |+. ||+--++.- .-+-|-.+|+++.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHG-IGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CceEEEEecccccceecccccCC-cCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhh
Confidence 367888886422 3444455543 3446788999999998854 321 443222221 1233446787753
Q ss_pred cceeEeeecccCceeEEEecCCCeEEEEecCCCe-----EEEEeCCCCeEEEEec---------CCcEEEEEEc-CCceE
Q 016446 91 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI-----YKVFDLKNYTMLYSIS---------DKHVQEIKIS-PGIML 155 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t-----iklWdl~~g~~l~tl~---------~~~V~~vafS-~g~~l 155 (389)
...|-.+...-.+..++.. +||..+.-+-..|- --|=-...|+++.-+. .+.|-+||.+ ....+
T Consensus 216 kh~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIG-RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hccCchhhhhcceeeeeeC-CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 3333221222345668886 88887776543221 1111112344443332 2579999999 55555
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
+.+++.+ +..-+||..||..+..-. +.+++=..+..+-+++++.+|.|.++
T Consensus 295 ~lTSP~G--N~~vi~da~tG~vv~~a~-----l~daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 295 ALTSPRG--NRAVIWDAATGAVVSEAA-----LPDAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEecCCC--CeEEEEEcCCCcEEeccc-----ccccccceeccCceEEecCCceEEec
Confidence 5555554 577899999999876532 22333333445667777788888776
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.26 Score=46.83 Aligned_cols=104 Identities=6% Similarity=0.033 Sum_probs=63.6
Q ss_pred CCeEEEEeCCCcEEEEECC-CCeEEEEcccC-CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 198 NEKLLVKQENENLQILDVR-NAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh-~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
+..++.|..|+.|.+|+.. -|........- ..-..-|.-..++.+..++. |+.||.|+.. ++.+-.--.|... +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 4678888999999999874 12221111111 11122222234555666776 9999999997 7766655556521 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+.....+..+++|+++ +-|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a---------~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIA---------DTSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEee---------ccccchhhhhcchh
Confidence 3555566677777776 12345789999875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.49 Score=51.21 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=84.1
Q ss_pred ccccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 2 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 2 ~~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+|.+...+-...++++.++..|.+.|+++.+|+.+..=+......+-....|++..+.|. |+.. ..|-+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa----gt~~------g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA----GTAS------GRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhh----hcCC------ceEEee
Confidence 456677777779999999999999999998776665444333356777778888886666 4555 444444
Q ss_pred EeccCCCCCcceeEeee---cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC
Q 016446 82 YIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 132 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~---~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~ 132 (389)
-+..+.. ..+..+++. +...|.++++| +||..|-+|...|+|-+=.|.+
T Consensus 104 ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 4443322 234455544 34456779998 9999999999999998887755
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.2 Score=55.23 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=74.8
Q ss_pred EEcCCCcEEEEE--c---CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 235 IFLYENQLFLTF--R---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 235 ~fspdg~~laS~--s---D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
.|.|--.+||.+ | -|.|-|+--+|+.-+..+- |+ -+.++++.|.--.||+|=. -|-+.
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~---P~---hatSLCWHpe~~vLa~gwe-----------~g~~~ 84 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY---PV---HATSLCWHPEEFVLAQGWE-----------MGVSD 84 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc---ce---ehhhhccChHHHHHhhccc-----------cceeE
Confidence 455555555544 2 5788888777885432221 11 1578999999999998743 38899
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|...+.+.-.....|. .+|.-|.|||||..|+|+.+=|.|.+|+
T Consensus 85 v~~~~~~e~htv~~th~----------------------------------a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHP----------------------------------APIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred EEecCCceeeeeccCCC----------------------------------CCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 99976655444445566 5899999999999999999999999997
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.2 Score=36.67 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=82.9
Q ss_pred cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE-eecCCceeEEEEEecCCCeEEEEeCCCcEEEEE-CCCCe
Q 016446 143 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLHRNKKVDFIEQFNEKLLVKQENENLQILD-VRNAE 219 (389)
Q Consensus 143 ~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl-~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd-~~tg~ 219 (389)
.+.+.|+| +|+.+|.-........+..+. .|.....+ .+ .....-.|. +++...+....+...+++. ..+|+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 78999999 788777664222234555555 34433333 32 344555665 4555555555666667773 44444
Q ss_pred E--EEEcccCCC-ceEEEEEcCCCcEEEEEc----CCeEEEEeC----CCc--E----EEEeccCcCCcCCCCeeEEEEC
Q 016446 220 L--MEVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE--L----VTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 220 ~--~~~l~gh~~-~v~sv~fspdg~~laS~s----D~tIklWd~----~G~--~----l~tl~gh~~~~~~~~v~sv~fS 282 (389)
. +..-..... .|.++.+||||..+|--. ++.|.+=-+ .|. . +........ .+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-----~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-----DVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-----cceeeeec
Confidence 3 222111111 899999999999988764 556655543 241 1 111111111 27899999
Q ss_pred CCCCEEEEEec
Q 016446 283 SDQDLIISYCK 293 (389)
Q Consensus 283 pdG~~laS~s~ 293 (389)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999888754
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.39 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE
Q 016446 229 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 261 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l 261 (389)
..|..++|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 4688999999999999998 99999999987654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=15 Score=36.58 Aligned_cols=164 Identities=16% Similarity=0.266 Sum_probs=102.1
Q ss_pred ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe
Q 016446 40 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 119 (389)
Q Consensus 40 ~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~ 119 (389)
.|-+ +.|-++.|||+-++|.++- +. ...-++--.+|++..+.+| ..+..+..+++. -+|++.++-
T Consensus 82 ~g~~-~nvS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL---~g~~DpE~Ieyi-g~n~fvi~d 146 (316)
T COG3204 82 LGET-ANVSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPL---TGFSDPETIEYI-GGNQFVIVD 146 (316)
T ss_pred cccc-ccccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecc---cccCChhHeEEe-cCCEEEEEe
Confidence 4444 3499999999999999852 22 2222444478888555444 234556779998 789999988
Q ss_pred cCCCeEEEEeCCCCeEE-------EEec-----CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEE---EEEee
Q 016446 120 AQDSIYKVFDLKNYTML-------YSIS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYH 183 (389)
Q Consensus 120 s~D~tiklWdl~~g~~l-------~tl~-----~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~ 183 (389)
-.|+++.+..+...... .+|. ...-..+|..| +++|..+ .+..+++|+.++.+.-- +....
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE---EccCCcEEEEEecCCcccccccccC
Confidence 89999999998765322 1221 13578899994 6666655 33468888776543311 11111
Q ss_pred cC-------CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 184 LL-------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 184 ~~-------~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
++ .-+-.+.|.++.+..++-+.+++.+.--|. .|+.+.
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~ 268 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIE 268 (316)
T ss_pred cccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeee
Confidence 11 123455666554555555778888887777 455433
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.48 E-value=2.6 Score=45.29 Aligned_cols=146 Identities=10% Similarity=0.175 Sum_probs=91.3
Q ss_pred CCCCeEEEEe----cC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE---EEEeecCCceeEEEEEecC---
Q 016446 130 LKNYTMLYSI----SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQF--- 197 (389)
Q Consensus 130 l~~g~~l~tl----~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~~~~~~~~v~f~~~~--- 197 (389)
|-.|+++++. ++ +.|..+|+.||++++-+. +.+ .+|+.- -+.-|...+|..+.|.|+.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~-------L~l---~~gE~kfGds~viGqFEhV~GlsW~P~~~~~ 71 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTD-------LQL---HNGEPKFGDSKVIGQFEHVHGLSWAPPCTAD 71 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEe-------eee---eCCccccCCccEeeccceeeeeeecCcccCC
Confidence 3456666654 32 789999999988775442 222 233321 0111334678999998542
Q ss_pred CCeEEEEeCCCcEEEEECC--C---CeEE--EEcc---cCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--Cc-EEE
Q 016446 198 NEKLLVKQENENLQILDVR--N---AELM--EVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE-LVT 262 (389)
Q Consensus 198 ~~~l~~~s~D~tIklWd~~--t---g~~~--~~l~---gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G~-~l~ 262 (389)
--.+++-+..+.|-+|.+. + ++.+ ++-+ .-.--...+.|.|....|+--. |-.| +.+++ +. ...
T Consensus 72 ~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVka 150 (671)
T PF15390_consen 72 TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKA 150 (671)
T ss_pred CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEE
Confidence 2378899999999999886 1 2221 1111 1111234567889888887553 6666 77774 33 344
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.++++.. |...+|++||++|+.+=
T Consensus 151 Di~~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 151 DIKTSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred eccCCce------EEEEEecCcCCEEEEEe
Confidence 5655432 78999999999999874
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.47 Score=33.98 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+.|..++|||....||.|+.||.|.+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 5799999999999999999999998876
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.3 Score=43.99 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=87.0
Q ss_pred EecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC---CceEEEEec--CCCCeeEEEEEcC-CCe-EEEEEeecCCcee
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP---GIMLLIFNR--SSSHVPLKILSIE-DGT-VLKVFYHLLHRNK 189 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~---g~~la~~~~--~s~d~tiklWd~~-tG~-~l~tl~~~~~~~~ 189 (389)
++.....++==|++.|+.+-+++ ...|.-+.|.| +++|.+.+. +-.|+.|--||.+ .|. .|..-++| .-..
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k-qy~~ 429 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK-QYST 429 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc-cccc
Confidence 33333344445888899887776 44577777774 333311000 1224677778865 222 33333332 1111
Q ss_pred EEEEE---ecCCCeEEEEeCCCcEEEEECCCCeE-EEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 190 KVDFI---EQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 190 ~v~f~---~~~~~~l~~~s~D~tIklWd~~tg~~-~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
.-.|+ .-.+++|++||.+|.|||||- .|.. ...|.|-..+|.-|.-+.||+.|+.-.+..+-|=++
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 12222 234689999999999999998 5554 445788889999999999999999888888887774
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.12 Score=57.20 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=77.8
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECC--CCeEEEEc-----ccCCCceEEEE---EcCCCcEEEEEc-CCeEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--NAELMEVS-----RTEFMTPSAFI---FLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~--tg~~~~~l-----~gh~~~v~sv~---fspdg~~laS~s-D~tIk 252 (389)
..+.+..++|..-+-.+++ -.=|..-+||+. .|++...| ......+.-|. |-++.-++-.+- +++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 3477777777421112222 122667888876 56653322 22222333344 455676666665 88999
Q ss_pred EEeCCCcEEEEeccCcCCcCCC------CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CCe----EEEE
Q 016446 253 VWNFRGELVTSFEDHLLWHPDC------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGK----CLAK 321 (389)
Q Consensus 253 lWd~~G~~l~tl~gh~~~~~~~------~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg~----~l~t 321 (389)
|-+.+..+..-+.+|..++.+- ++.=-..||||+.+|.++.| |.++.|.+. +|+ |++.
T Consensus 209 lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d-----------G~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 209 LLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD-----------GSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred EeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC-----------CccceeeeeeeccccHhhhhc
Confidence 8777644435566788764221 01111269999999999875 888888763 344 7777
Q ss_pred ecCCCCC
Q 016446 322 INATNCS 328 (389)
Q Consensus 322 l~gH~~~ 328 (389)
.+.|+++
T Consensus 278 wkphd~~ 284 (1283)
T KOG1916|consen 278 WKPHDKH 284 (1283)
T ss_pred cCCCCCC
Confidence 7778744
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.13 E-value=4.4 Score=39.04 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=49.9
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eEEEEeCCC---cEE-E----EeccCcCCcCCCCeeE
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRG---ELV-T----SFEDHLLWHPDCNTNN 278 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tIklWd~~G---~~l-~----tl~gh~~~~~~~~v~s 278 (389)
-+||+.+++..-.-....-.-.+=+|.|||++|.+|+ || .||+++... .|- . .|. ..-| | .+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RW----Y-pT 122 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRW----Y-PT 122 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCc----c-cc
Confidence 4788888876544333333444456899999999996 54 688887532 221 1 121 1123 2 56
Q ss_pred EEECCCCCEEEEEecC
Q 016446 279 IYITSDQDLIISYCKA 294 (389)
Q Consensus 279 v~fSpdG~~laS~s~D 294 (389)
+..=|||+.|+.|+..
T Consensus 123 ~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSN 138 (243)
T ss_pred ceECCCCCEEEEeCcC
Confidence 7778999999999764
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.4 Score=38.99 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=55.2
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-------cc-------cCCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-------l~-------gh~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
+.|....+.++++-..+|.+.+||+++++++-. +. .....|.++.++.+|.-+++-++|..-.|+.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 344445688888889999999999999987443 22 4567888899999999999999888889998
Q ss_pred CCcE
Q 016446 257 RGEL 260 (389)
Q Consensus 257 ~G~~ 260 (389)
+=++
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 8333
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.32 E-value=25 Score=35.03 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=57.3
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEe-ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl-~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+-...+..+..++||+++|.++ -...+-||--...-+.. ..-.. .|.++.|+|||.+.+.+ .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~-~---------- 205 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLA-R---------- 205 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEE-T----------
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc-----eehhceecCCCCEEEEe-C----------
Confidence 3345688888899999999998 45667888632211111 11122 38999999999987764 3
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
.|-|+.=+. ..-..+++.+.. ..+..+ -.+..++|.|+++..|+|+...
T Consensus 206 -Gg~~~~s~~--~~~~~~w~~~~~------~~~~~~---------------------~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 206 -GGQIQFSDD--PDDGETWSEPII------PIKTNG---------------------YGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp -TTEEEEEE---TTEEEEE---B-------TTSS-----------------------S-EEEEEESSSS-EEEEESTT-
T ss_pred -CcEEEEccC--CCCccccccccC------CcccCc---------------------eeeEEEEecCCCCEEEEeCCcc
Confidence 367776651 222333333220 000000 3589999999999999887643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.30 E-value=6.3 Score=38.11 Aligned_cols=86 Identities=8% Similarity=0.064 Sum_probs=55.7
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEE--cCCCeEEEE-----EeecCCceeEEEEEecCC------CeE-EEEeCCCcE
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILS--IEDGTVLKV-----FYHLLHRNKKVDFIEQFN------EKL-LVKQENENL 210 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd--~~tG~~l~t-----l~~~~~~~~~v~f~~~~~------~~l-~~~s~D~tI 210 (389)
.++++ +..++... ++.+.+|.-|| .+||...+. |+.. .+-.-..||| +.| ++.=..++|
T Consensus 162 gl~Wd~d~K~fY~i--Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYI--DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred cccccccCcEEEEE--ccCceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 45555 55555554 66678998898 888876532 2210 0000011222 233 334477999
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
...|..||+.++.+.=-...+++++|-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEec
Confidence 999999999999887778999999994
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=22 Score=38.14 Aligned_cols=203 Identities=8% Similarity=0.003 Sum_probs=101.8
Q ss_pred EeeccEEEEEecC------ceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 10 VAARDIVFALAHS------GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 10 ~~~~~~~a~~~~~------gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+..+.+.++|..+ .++-.+|..+++ .+..++... -...+-.-+|+..|. |+.+ ..-....+..+
T Consensus 301 ~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R---~~~~~~~~~g~IYvi----GG~~-~~~~~~sve~Y 372 (557)
T PHA02713 301 IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR---CRFSLAVIDDTIYAI----GGQN-GTNVERTIECY 372 (557)
T ss_pred EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh---hceeEEEECCEEEEE----CCcC-CCCCCceEEEE
Confidence 3347777777653 345667765543 333332211 111223446776666 4444 22223456677
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC-----------------------eEEEEeCCCCe--EE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--ML 136 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~-----------------------tiklWdl~~g~--~l 136 (389)
|..+.+.....++-. .......+++ +|++.+.|+.++ ++..+|..+.+ .+
T Consensus 373 dp~~~~W~~~~~mp~--~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 373 TMGDDKWKMLPDMPI--ALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred ECCCCeEEECCCCCc--ccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 766554421111110 1111122443 689999998763 46667766654 22
Q ss_pred EEecCCcEE-EEEEcCCceEEEEecCCC---CeeEEEEEcCC-C--eEEEEEeecCCceeEEEEEecCCCeEEEEeCCC-
Q 016446 137 YSISDKHVQ-EIKISPGIMLLIFNRSSS---HVPLKILSIED-G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE- 208 (389)
Q Consensus 137 ~tl~~~~V~-~vafS~g~~la~~~~~s~---d~tiklWd~~t-G--~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~- 208 (389)
..+...... +++.-+|.+.+.++.++. ...+..+|.++ . +.+..++..... ..++. .++...++|+.|+
T Consensus 448 ~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 448 PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-LHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-ceeEE--ECCEEEEEeeecce
Confidence 222222221 233335666666543211 13567899886 3 444555422111 22222 3456666688887
Q ss_pred -cEEEEECCCCeEEEEcccCC
Q 016446 209 -NLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 209 -tIklWd~~tg~~~~~l~gh~ 228 (389)
++..+|+.+.+-...-..|.
T Consensus 525 ~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 525 MLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eehhhcCcccccccchhhhcC
Confidence 88888888877655544554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.49 E-value=4.2 Score=42.20 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=63.1
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC----------------
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS---------------- 283 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp---------------- 283 (389)
..|....-.+.+++.+|++++.|... =|-|-|+|+. +..++-++|=-+.. |. |--...+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~-wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CG-WIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EE-EEEeecccccccccccccCCCCc
Confidence 34555556788999999999888875 6789999996 88888777643321 10 1111111
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
-..+||-+.. ..|.|.||++++|..+..++-
T Consensus 378 ~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 1357777754 469999999999999998864
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.13 E-value=54 Score=37.53 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=104.3
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEE---EeeC-CCEEEEEEE-eecCCCcceeeeeeeEeEecc-CCCCCcceeEee
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLF---YNKN-NDSLITVSV-YASDNFSSLKCRSTKIEYIRR-GKPDSGFALFES 97 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~---~spd-g~~l~s~s~-~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~ 97 (389)
-++++|..|=+.++...+...+.+.|+- |--| +.+++.+-+ .-++. .-.+...+-+..... +++ +.+-.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde-~ep~~GRIivfe~~e~~~L---~~v~e~ 826 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDE-NEPVNGRIIVFEFEELNSL---ELVAET 826 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCC-CCcccceEEEEEEecCCce---eeeeee
Confidence 4778888887877776666556666555 7777 555555322 11222 222333333333333 222 223334
Q ss_pred ecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 98 ESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 98 ~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
...|.|.+ +.| ||++|| +-...|||+++.+.+.++.-. ...+..+... .|..+|++..=. .-|+--++-.
T Consensus 827 ~v~Gav~aL~~f---ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~ 900 (1096)
T KOG1897|consen 827 VVKGAVYALVEF---NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGD 900 (1096)
T ss_pred eeccceeehhhh---CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEecc
Confidence 45566666 466 699998 567899999998886655443 4678888888 788888873221 1233334444
Q ss_pred CCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 016446 174 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 215 (389)
Q Consensus 174 tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~ 215 (389)
.|+..-.-+ .+..+..++++. +++.++-+-.++.+.+--.
T Consensus 901 eg~f~evArD~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 901 EGNFEEVARDYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred CCceEEeehhhCccceeeEEEe--cCceEEeecccccEEEEEe
Confidence 454544433 233344555554 4666666667777766533
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.32 E-value=42 Score=35.34 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=75.8
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--cccCC-CceEEEEEcCCC
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF-MTPSAFIFLYEN 240 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~--l~gh~-~~v~sv~fspdg 240 (389)
...+.+-| .+|.....+.....+...+.+. .++.+++++. ..++..|+ .|+.+.. +.+.. ..=..+.+.|+|
T Consensus 127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l--~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLID-NNGDVRWYLPLDSGSDNSFKQL--PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEE-TTS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEEC-CCccEEEEEccCccccceeeEc--CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCC
Confidence 46778889 5789988887433333333443 3566666554 88888888 4665433 33310 001236688999
Q ss_pred cEEEEEc--------------CCeEEEEeCCCcEEEEe--ccCcCCcCC--------------------CCeeEEEECC-
Q 016446 241 QLFLTFR--------------NRTVAVWNFRGELVTSF--EDHLLWHPD--------------------CNTNNIYITS- 283 (389)
Q Consensus 241 ~~laS~s--------------D~tIklWd~~G~~l~tl--~gh~~~~~~--------------------~~v~sv~fSp- 283 (389)
++|+.+. .-.|-..|.+|+.+..+ ..|-.+.+. .=+++|.+.|
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 9888655 12233444347665542 233211110 1278999988
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
|+.+|+|+ +. -..|-..|-.+|+....|-.|.+.
T Consensus 282 dd~iivSs-R~----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 282 DDSIIVSS-RH----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTEEEEEE-TT----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCeEEEEc-Cc----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 77777774 32 147878888899999999888743
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.04 E-value=30 Score=33.63 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=77.8
Q ss_pred ceeeeeeecCCcceEE-------EEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE--eccCCCCCcceeEeee---cc
Q 016446 33 NRRICFLNVSPDEVIR-------SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY--IRRGKPDSGFALFESE---SL 100 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~-------sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~--i~~g~~~~~~~l~~~~---~~ 100 (389)
|.+-.-+-+|+-+.|+ .++|+.|-++.-.. -+.+ ..+.-|| .++|.+.+...+|... .+
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i---Dsln------~~V~a~dyd~~tG~~snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYI---DSLN------YEVDAYDYDCPTGDLSNRKVIFDLRKSQPF 209 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEE---ccCc------eEEeeeecCCCcccccCcceeEEeccCCCc
Confidence 3333334455544444 56777666643331 1234 5665576 6899887666677622 22
Q ss_pred cC--ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEE
Q 016446 101 KW--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 101 ~~--~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tikl 169 (389)
.+ |...+.+ .+|.+.+..=.-++|.--|+.+|+.+.++. ...|.+++|- + +-+..++ ....|.++++
T Consensus 210 e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~-aa~~~dp~~~ 283 (310)
T KOG4499|consen 210 ESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT-AAKFDDPVRT 283 (310)
T ss_pred CCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe-hhcccCchhc
Confidence 22 4446665 577777766677899999999999887765 7899999999 6 3333333 3334445544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.4 Score=46.82 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.1
Q ss_pred eeEEEECC----CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 276 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 276 v~sv~fSp----dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
+.++++++ +..+|++-|.| +++|+||+.+++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D-----------~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRD-----------HTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETT-----------SEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeCC-----------CeEEEEECCCCeEEEEeccc
Confidence 56778888 88999998875 89999999999998886443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.34 E-value=31 Score=32.90 Aligned_cols=184 Identities=10% Similarity=0.034 Sum_probs=98.0
Q ss_pred EEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe---cCCCeE-EEEeCCCcEEEEECCCCeEEE
Q 016446 147 IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEKL-LVKQENENLQILDVRNAELME 222 (389)
Q Consensus 147 vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~---~~~~~l-~~~s~D~tIklWd~~tg~~~~ 222 (389)
+.+-+|.++.++..-+ -..||.||+.+|+.+..-+-.. .-.|-+ .-++++ +-.=.|+.--.+|..+-+++.
T Consensus 51 L~~~~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~----~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 51 LEYLDGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAP----DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred eeeeCCEEEEeccccc-cceeEEEeccCceEEEEeecCC----ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 3333454444332222 2479999999999987654210 111110 001111 123367788888888888776
Q ss_pred Ec--ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-----CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 223 VS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 223 ~l--~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-----G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
.+ +|.. |.+ -.|++.|..+. ..|++.-|.. ++...|++|-. + ..++.+.+ -||...|--=.+
T Consensus 126 ~~~y~GeG---WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v--~~LNELE~-VdG~lyANVw~t 195 (262)
T COG3823 126 RFSYEGEG---WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--V--SKLNELEW-VDGELYANVWQT 195 (262)
T ss_pred ccccCCcc---eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--c--ccccceee-eccEEEEeeeee
Confidence 54 3332 333 34455555554 6677777642 34455555432 1 11333332 267666643322
Q ss_pred CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-C
Q 016446 295 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-N 373 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~ 373 (389)
..|---|..+|+.++.+.-.. -....+.++.+++..+.+||.|++ +
T Consensus 196 -----------~~I~rI~p~sGrV~~widlS~----------------------L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 196 -----------TRIARIDPDSGRVVAWIDLSG----------------------LLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred -----------cceEEEcCCCCcEEEEEEccC----------------------CchhcCccccccccccceeecCcCCe
Confidence 344455777888877765432 111222334445678889999999 6
Q ss_pred EEEEe
Q 016446 374 EIYTG 378 (389)
Q Consensus 374 ~LaSg 378 (389)
.+++|
T Consensus 243 ~~iTG 247 (262)
T COG3823 243 FLITG 247 (262)
T ss_pred EEEec
Confidence 66666
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.17 E-value=14 Score=35.16 Aligned_cols=117 Identities=8% Similarity=0.049 Sum_probs=70.3
Q ss_pred CCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE----EEEEeecCCce---eEEE
Q 016446 121 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV----LKVFYHLLHRN---KKVD 192 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~----l~tl~~~~~~~---~~v~ 192 (389)
.||..-..|..+.+++..++ .+.=|.++- |+..|..+. ++ .+++.-|.+|=.. ..++.+ .+| +++.
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~-d~~~Limsd-Gs--atL~frdP~tfa~~~~v~VT~~g--~pv~~LNELE 182 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS-DDKNLIMSD-GS--ATLQFRDPKTFAELDTVQVTDDG--VPVSKLNELE 182 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec-CCcceEeeC-Cc--eEEEecCHHHhhhcceEEEEECC--eeccccccee
Confidence 35566667777777776665 445566654 444444432 21 4777777665333 334432 333 6666
Q ss_pred EEecCCCeEEE-EeCCCcEEEEECCCCeEEEEc------------ccCCCceEEEEEcCCC-cEEEEE
Q 016446 193 FIEQFNEKLLV-KQENENLQILDVRNAELMEVS------------RTEFMTPSAFIFLYEN-QLFLTF 246 (389)
Q Consensus 193 f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l------------~gh~~~v~sv~fspdg-~~laS~ 246 (389)
+. ++.+.+ -=.+-.|-.-|.++|+.+... ..|.+-.+.+|+-|++ +++++|
T Consensus 183 ~V---dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 183 WV---DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ee---ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65 344444 335666666788888876553 3466678889999988 777776
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.97 E-value=2.5 Score=28.08 Aligned_cols=29 Identities=3% Similarity=0.006 Sum_probs=20.2
Q ss_pred cCCCceEEEEEcCCCcEEEEEc--C--CeEEEE
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR--N--RTVAVW 254 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s--D--~tIklW 254 (389)
.....-...+|||||+.|+-.+ + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667789999999998775 6 666666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.85 E-value=23 Score=38.76 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=64.5
Q ss_pred eeEEEEEcCCCeEEEEEe-ecCCceeEEEEE-ecCCCeEEEEeCCCcEEEEECC-----CC----eEEEE--cccCC-Cc
Q 016446 165 VPLKILSIEDGTVLKVFY-HLLHRNKKVDFI-EQFNEKLLVKQENENLQILDVR-----NA----ELMEV--SRTEF-MT 230 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~-~~~~~~l~~~s~D~tIklWd~~-----tg----~~~~~--l~gh~-~~ 230 (389)
.++.|||...|.+...-. ...+.|..+.|. .|+++.+++-+..+.|.|+--. .. ..++. +..|+ .+
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~ 130 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP 130 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence 689999999999776544 234788888884 5678899999999999998532 11 12222 24454 57
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 231 PSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 231 v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
|...+|.+||.+++.+ ++.+-|.|-
T Consensus 131 Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 131 IGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred ccceeEecCCeEEEEe-CCEEEEECC
Confidence 8999999999877644 555666664
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.66 E-value=22 Score=38.98 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=66.0
Q ss_pred CeEEE-EeCCCcEEEEECCCCeEEE--EcccCCCceEEEEE--cCCCcEEEEEc-CCeEEEEeC------C-C---cEEE
Q 016446 199 EKLLV-KQENENLQILDVRNAELME--VSRTEFMTPSAFIF--LYENQLFLTFR-NRTVAVWNF------R-G---ELVT 262 (389)
Q Consensus 199 ~~l~~-~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~f--spdg~~laS~s-D~tIklWd~------~-G---~~l~ 262 (389)
++++. .+...++.|||.+.+.+.. .+ .+.+.|..+.| .||||.+++-+ .+.|.|+-- + + ..++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 44444 3466889999999988633 33 34567888876 69999999999 999999852 1 1 2233
Q ss_pred E--eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 263 S--FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 263 t--l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
. +..|.. ++ |.+..+-+||.+++.++ +.+.|.|
T Consensus 120 ~i~i~~~T~-h~---Igds~Wl~~G~LvV~sG-------------Nqlfv~d 154 (631)
T PF12234_consen 120 KIDISSHTP-HP---IGDSIWLKDGTLVVGSG-------------NQLFVFD 154 (631)
T ss_pred EEEeecCCC-CC---ccceeEecCCeEEEEeC-------------CEEEEEC
Confidence 2 234442 22 67899999999888653 4677776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=59 Score=34.94 Aligned_cols=216 Identities=8% Similarity=0.050 Sum_probs=106.7
Q ss_pred eEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 24 VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 24 tiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
.+..||..+++ .+..++.... . .+++. -+|...+. |+.+...-....+..+|..+.+.....++- ....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~-~~~a~-l~~~IYvi----GG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~ 343 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-N-YASAI-VDNEIIIA----GGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRC 343 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-c-eEEEE-ECCEEEEE----cCCCCCCCccceEEEEECCCCeEeeCCCCc--chhh
Confidence 56678876554 3333433221 1 22222 36665555 444322222345556666555431111111 0111
Q ss_pred CceeEEEecCCCeEEEEecCCC-----eEEEEeCCCCe--EEEEecCC-cEEEEEEcCCceEEEEecCCC----------
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYT--MLYSISDK-HVQEIKISPGIMLLIFNRSSS---------- 163 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~-----tiklWdl~~g~--~l~tl~~~-~V~~vafS~g~~la~~~~~s~---------- 163 (389)
.. +++- -+|++.|.|+.++ ++..||..+.+ .+..++.. .-.+++.-+|...+.++.++.
T Consensus 344 ~~-~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 344 RF-SLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred ce-eEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccc
Confidence 11 2333 3689999998764 47889987665 22222211 111222236666666643321
Q ss_pred ----------CeeEEEEEcCCCeE--EEEEeecCCce-eEEEEEecCCCeEEEEeCC------CcEEEEECCC-CeE--E
Q 016446 164 ----------HVPLKILSIEDGTV--LKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN------ENLQILDVRN-AEL--M 221 (389)
Q Consensus 164 ----------d~tiklWd~~tG~~--l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D------~tIklWd~~t-g~~--~ 221 (389)
-.++..+|.++.+= +..+. ..+. ..++. .++...+.|+.+ ..+..+|.++ .+- +
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 13577788777543 22222 1222 22332 234455557643 3467899887 443 2
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CC--eEEEEeCC
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNFR 257 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~--tIklWd~~ 257 (389)
..+.........+++ +|++.+.|+ |+ ++..+|..
T Consensus 497 ~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 497 TTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 333333333344444 889999988 87 78788875
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=60 Score=34.20 Aligned_cols=192 Identities=9% Similarity=-0.005 Sum_probs=93.7
Q ss_pred CCeEEEEecCCC------eEEEEeCCCCeEEE--EecCC-cEEEEEEcCCceEEEEecCCC--CeeEEEEEcCCCeEEE-
Q 016446 112 NGKVLTYSAQDS------IYKVFDLKNYTMLY--SISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLK- 179 (389)
Q Consensus 112 dG~~Las~s~D~------tiklWdl~~g~~l~--tl~~~-~V~~vafS~g~~la~~~~~s~--d~tiklWd~~tG~~l~- 179 (389)
++.+.+.|+.++ .+..+|..+.+-.. .+... .-.+++.-+|...+.++.... -.++..||..+++-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 577888887643 46677776666321 11111 112222236666666643311 1357778887755322
Q ss_pred -EEeecCCce-eEEEEEecCCCeEEEEeC--C----CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC-
Q 016446 180 -VFYHLLHRN-KKVDFIEQFNEKLLVKQE--N----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR- 249 (389)
Q Consensus 180 -tl~~~~~~~-~~v~f~~~~~~~l~~~s~--D----~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~- 249 (389)
.++ ..+. ..++. .++...+.|+. + ..+..||..+++-...-.-....-...+...++++.+.|+ +.
T Consensus 374 ~~lp--~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLI--FPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred CCcC--cCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 222 1111 22222 23445555662 2 4688999988765432110000001122345677777775 32
Q ss_pred -------eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 250 -------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 250 -------tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.+..+|.....-..+..-..+. .....+.+ +|++.+.|+.+. ....++|...|..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPR--INASLCIF--NNKIYVVGGDKY------EYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCccc--ccceEEEE--CCEEEEEcCCcC------CcccceeEEEeCCCCE
Confidence 3778887522222222111110 01122333 888888887541 1113578899987664
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.93 E-value=4.3 Score=26.95 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=15.0
Q ss_pred eeEEEECCCCCEEEEEecC
Q 016446 276 TNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D 294 (389)
-...+|||||++|+-.+.-
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 4788999999999987753
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.93 E-value=61 Score=34.14 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=73.4
Q ss_pred CCeEEEEe---cCCCeEEEEeCCCCeEEEEecCCcEEE--EEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 112 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKHVQE--IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 112 dG~~Las~---s~D~tiklWdl~~g~~l~tl~~~~V~~--vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
+|=++++. ......-+-|. +|.....+....... +.+- +|.+++.. . ..++..|+ .|+.+.....-.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-~----~~~~e~D~-~G~v~~~~~l~~ 186 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGS-G----NRLYEIDL-LGKVIWEYDLPG 186 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEE-B----TEEEEE-T-T--EEEEEE--T
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEec-C----CceEEEcC-CCCEEEeeecCC
Confidence 34455554 23444555563 566555554322222 4444 46555433 2 57888896 588776654222
Q ss_pred Cc---eeEEEEEecCCCeEEEEe--------------CCCcEEEEECCCCeEEEEc--ccCC------------------
Q 016446 186 HR---NKKVDFIEQFNEKLLVKQ--------------ENENLQILDVRNAELMEVS--RTEF------------------ 228 (389)
Q Consensus 186 ~~---~~~v~f~~~~~~~l~~~s--------------~D~tIklWd~~tg~~~~~l--~gh~------------------ 228 (389)
+. -.++... |.|..|+.+. +|. |-..| ++|+.+..+ ..|-
T Consensus 187 ~~~~~HHD~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 187 GYYDFHHDIDEL-PNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp TEE-B-S-EEE--TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccccccEEC-CCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 11 1345554 5555655554 333 55556 677765542 2221
Q ss_pred -------CceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc
Q 016446 229 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 271 (389)
Q Consensus 229 -------~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~ 271 (389)
.+++++.+.| ++.+|+|+. -.+|-.-|.. |++.-.|-.|..|.
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~ 316 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWN 316 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCC
Confidence 3688999988 899999998 5577777854 99998998887663
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.20 E-value=15 Score=35.41 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=72.1
Q ss_pred EEeCCCCeEE-EEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeEE-E----EEeecCCce-eEEEEEe
Q 016446 127 VFDLKNYTML-YSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTVL-K----VFYHLLHRN-KKVDFIE 195 (389)
Q Consensus 127 lWdl~~g~~l-~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~l-~----tl~~~~~~~-~~v~f~~ 195 (389)
+||+.+++.. .... .-...+=+|- +|.+|.++........||+++..+ +.|- . .|. ..+. .++.-.
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~--~~RWYpT~~~L- 126 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ--SGRWYPTATTL- 126 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc--CCCccccceEC-
Confidence 6776665521 1111 1222223333 677776665444456788887543 1121 1 122 2344 333333
Q ss_pred cCCCeEEEEe-CCCcEEEEECCC-C-eE--EEEcc----cCCCceE-EEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEe
Q 016446 196 QFNEKLLVKQ-ENENLQILDVRN-A-EL--MEVSR----TEFMTPS-AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 196 ~~~~~l~~~s-~D~tIklWd~~t-g-~~--~~~l~----gh~~~v~-sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl 264 (389)
+||+.|++|+ ..-+...|.-+. + .. +..+. ......+ -+...|||++|+.+..+.+ |+|.. ++.+++|
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~-i~d~~~n~v~~~l 205 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI-IYDYKTNTVVRTL 205 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE-EEeCCCCeEEeeC
Confidence 7888888876 455677777532 1 11 11221 1112222 2445899999998886666 78987 6666776
Q ss_pred c
Q 016446 265 E 265 (389)
Q Consensus 265 ~ 265 (389)
.
T Consensus 206 P 206 (243)
T PF07250_consen 206 P 206 (243)
T ss_pred C
Confidence 5
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=67 Score=33.80 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=74.2
Q ss_pred CCeEEEEecCC-----CeEEEEeCCCCeEE--EEecCC-cEEEEEEcCCceEEEEecCCCC---eeEEEEEcCCCeEEE-
Q 016446 112 NGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSSH---VPLKILSIEDGTVLK- 179 (389)
Q Consensus 112 dG~~Las~s~D-----~tiklWdl~~g~~l--~tl~~~-~V~~vafS~g~~la~~~~~s~d---~tiklWd~~tG~~l~- 179 (389)
+|++.+.|+.+ .++..||..+.+-. ..++.. .-.+++.-+|...+.++....+ ..+..+|+.+++-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 68888888876 35667887665521 122211 1122333366666665432222 467888988755322
Q ss_pred -EEeecCCce-eEEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEEccc--CCCceEEEEEcCCCcEEEEEc
Q 016446 180 -VFYHLLHRN-KKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 180 -tl~~~~~~~-~~v~f~~~~~~~l~~~s~D--------~tIklWd~~tg~~~~~l~g--h~~~v~sv~fspdg~~laS~s 247 (389)
.++. .+. ..+.. .++...+.|+.+ ..+.++|.++++-.....- .......++ .++++++-|+
T Consensus 422 ~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG 495 (534)
T PHA03098 422 SPLPI--SHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGG 495 (534)
T ss_pred CCCCc--cccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcC
Confidence 1210 111 11222 234444556532 2388999988775443211 111112222 3788888776
Q ss_pred -C-----CeEEEEeCCCcEE
Q 016446 248 -N-----RTVAVWNFRGELV 261 (389)
Q Consensus 248 -D-----~tIklWd~~G~~l 261 (389)
+ ++|..+|.....-
T Consensus 496 ~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CcCCcccceeEEEeCCCCEE
Confidence 4 4778888764433
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=82.57 E-value=24 Score=35.44 Aligned_cols=90 Identities=9% Similarity=0.108 Sum_probs=59.8
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCC-C---------------
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSS-H--------------- 164 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~-d--------------- 164 (389)
.|.+-.|. ||++-++-+..|++.-+|.++|+...... .+..+.++|- |.++.++.+.-. +
T Consensus 204 mPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~ 280 (335)
T TIGR03032 204 MPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA-GDFAFVGLSKLRESRVFGGLPIEERLDAL 280 (335)
T ss_pred CCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee-CCEEEEEeccccCCCCcCCCchhhhhhhh
Confidence 34455563 79999999999999999998887433332 3456677777 666655544322 1
Q ss_pred -eeEEEEEcCCCeEEEEEee--cCCceeEEEEE
Q 016446 165 -VPLKILSIEDGTVLKVFYH--LLHRNKKVDFI 194 (389)
Q Consensus 165 -~tiklWd~~tG~~l~tl~~--~~~~~~~v~f~ 194 (389)
.-|.+-|+.||..+..|+. --..++.|+..
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vL 313 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVL 313 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCceeEEEEEEEe
Confidence 2467779999999988763 22344666665
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.53 E-value=5.5 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCCe-EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc
Q 016446 111 VNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS 150 (389)
Q Consensus 111 pdG~-~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS 150 (389)
|||+ +.++.-.+++|-+.|+++++.+..+. +..=+.++||
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 4555 55556678999999999999887776 4444455554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.22 E-value=7.1 Score=41.43 Aligned_cols=38 Identities=11% Similarity=0.449 Sum_probs=27.6
Q ss_pred CceEEEEEcC----CCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 229 MTPSAFIFLY----ENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 229 ~~v~sv~fsp----dg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
..+.+++..+ +..+|++-+ |+++|+||+. ++|+.+..-
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3456667766 778888888 9999999997 999777643
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.01 E-value=7.9 Score=36.52 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccc
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 357 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.+.+..+|++|+.-.. +|.+++||+.+++++..-. +-.| + ...... ...
T Consensus 15 ~~~l~~~~~~Ll~iT~-----------~G~l~vWnl~~~k~~~~~~--Si~p---l-l~~~~~------------~~~-- 63 (219)
T PF07569_consen 15 VSFLECNGSYLLAITS-----------SGLLYVWNLKKGKAVLPPV--SIAP---L-LNSSPV------------SDK-- 63 (219)
T ss_pred eEEEEeCCCEEEEEeC-----------CCeEEEEECCCCeeccCCc--cHHH---H-hccccc------------ccC--
Confidence 3446678999887665 5999999999999853320 1000 0 000000 000
Q ss_pred cccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 358 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 358 ~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.....|.++.++++|.-|++=+. |..-.|+
T Consensus 64 ~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 64 SSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred CCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
Confidence 12258999999999998888764 4555554
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.71 E-value=6.2 Score=26.18 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=29.3
Q ss_pred cCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 196 QFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 196 ~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
|+++++.++. .+++|-++|..+++.+..+.- ....+.++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 3566666654 789999999999998887665 2445566553
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.71 E-value=25 Score=39.02 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=85.0
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc----ccCCCceEEEEEcCCC
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----RTEFMTPSAFIFLYEN 240 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l----~gh~~~v~sv~fspdg 240 (389)
..|+++++ +|++|.++.-..+..-...|+ +++.|+.-+.||++.++++ .|+.++.. +-....|..+.|...|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~-~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGL-LGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeec-chhhhcccccccccccCceeEEEEecCc
Confidence 56999995 789998776221334444443 4789999999999999998 56554431 1122235555555555
Q ss_pred cEEEEEcCCeE--------EEEeC-C--C-----cEEEEecc----------------------------CcCCcCCCCe
Q 016446 241 QLFLTFRNRTV--------AVWNF-R--G-----ELVTSFED----------------------------HLLWHPDCNT 276 (389)
Q Consensus 241 ~~laS~sD~tI--------klWd~-~--G-----~~l~tl~g----------------------------h~~~~~~~~v 276 (389)
-.+.+.++.-+ ++|.. + + .|...+.. |...-+...+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 44444443333 34432 0 0 12211211 1111111235
Q ss_pred eEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
--+.+||+.++||-...+ |.|.+=++...+++-+++
T Consensus 220 ~ki~VS~n~~~laLyt~~-----------G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTET-----------GKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEecC-----------CcEEEEecchhhhhhccC
Confidence 678899999999998654 788777777777766655
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=81.64 E-value=31 Score=36.20 Aligned_cols=180 Identities=7% Similarity=0.046 Sum_probs=79.7
Q ss_pred CCCeEEEEec--C----CCeEEEEeCCCCeEEEEecC---C--cEEEEEEcCC-ceEEEEecC-----------------
Q 016446 111 VNGKVLTYSA--Q----DSIYKVFDLKNYTMLYSISD---K--HVQEIKISPG-IMLLIFNRS----------------- 161 (389)
Q Consensus 111 pdG~~Las~s--~----D~tiklWdl~~g~~l~tl~~---~--~V~~vafS~g-~~la~~~~~----------------- 161 (389)
|+|++++|+= . -|-+-+-|-++-+.+..... . .-.++-+.|. +.+++++.+
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 7888887752 1 23455556555555544431 1 2234444453 333343322
Q ss_pred CCCeeEEEEEcCCCeEEEEEee-cCC-ceeEEEEEecCCC---eEEEEeCCCcEEEEEC-CCCe-----EEEEcc----c
Q 016446 162 SSHVPLKILSIEDGTVLKVFYH-LLH-RNKKVDFIEQFNE---KLLVKQENENLQILDV-RNAE-----LMEVSR----T 226 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~-~~~-~~~~v~f~~~~~~---~l~~~s~D~tIklWd~-~tg~-----~~~~l~----g 226 (389)
.--+++.+||+++.+.++++.- -.+ ...+|.|. .++. -++.+.-..+|-+|=- +.|+ .+++.. +
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 0125899999999999999982 222 34899997 3332 2222235555555533 3332 122211 1
Q ss_pred C------------CCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--C--cEEEEec-cCcC-----C-cCC----CCee
Q 016446 227 E------------FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--G--ELVTSFE-DHLL-----W-HPD----CNTN 277 (389)
Q Consensus 227 h------------~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G--~~l~tl~-gh~~-----~-~~~----~~v~ 277 (389)
- ..-|..|..|.|.++|--+ . +|.||.+|++ - +++-... |-.- + +.. ....
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 2346888899988887666 4 9999999985 2 2332111 1000 0 000 0114
Q ss_pred EEEECCCCCEEEEE
Q 016446 278 NIYITSDQDLIISY 291 (389)
Q Consensus 278 sv~fSpdG~~laS~ 291 (389)
=|..|.||++|--.
T Consensus 378 MvqlS~DGkRlYvT 391 (461)
T PF05694_consen 378 MVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTSSEEEEE
T ss_pred eEEEccCCeEEEEE
Confidence 57889999988654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=81.63 E-value=98 Score=34.86 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=93.5
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc--------eeEEEEEe---------------cCCCeEEEEeCCC
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--------NKKVDFIE---------------QFNEKLLVKQENE 208 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~--------~~~v~f~~---------------~~~~~l~~~s~D~ 208 (389)
|++|..++. ++.|.=.|.+||+.+-++.-.... .+.|++-. ..++++..+..|+
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 555555533 357777899999999887632211 23344421 1235788888999
Q ss_pred cEEEEECCCCeEEEEcccCCCce-------------EEEEEcC---CCcEEEEEc----------CCeEEEEeCC-CcEE
Q 016446 209 NLQILDVRNAELMEVSRTEFMTP-------------SAFIFLY---ENQLFLTFR----------NRTVAVWNFR-GELV 261 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v-------------~sv~fsp---dg~~laS~s----------D~tIklWd~~-G~~l 261 (389)
.+.-.|.+||+.+..+..+ ..| ..+.-+| ++.+++.++ +|.|+-.|+. |+++
T Consensus 271 ~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999999988765321 111 1122233 566666543 4789999996 9988
Q ss_pred EEecc-CcC---CcCC--------CCe-eEEEECCCCCEEEEEec-CCC---cccc---cCCCCCeEEEEeCCCCeEEEE
Q 016446 262 TSFED-HLL---WHPD--------CNT-NNIYITSDQDLIISYCK-AEP---EDQW---MEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 262 ~tl~g-h~~---~~~~--------~~v-~sv~fSpdG~~laS~s~-D~~---~~~~---~~s~D~tIklWd~~tg~~l~t 321 (389)
-.+.- +.. .... ..+ ...++.|+-.++.-+.. ..+ .... ..--.++|-=-|+.|||....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 66541 100 0000 011 12344444333332211 000 0000 011236777889999999988
Q ss_pred ecC
Q 016446 322 INA 324 (389)
Q Consensus 322 l~g 324 (389)
++-
T Consensus 430 ~Q~ 432 (764)
T TIGR03074 430 FQT 432 (764)
T ss_pred ecc
Confidence 876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=62 Score=32.29 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=77.9
Q ss_pred CcEEEEEEcC-CceEEEEecCCCCeeEE-EEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 016446 142 KHVQEIKISP-GIMLLIFNRSSSHVPLK-ILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 142 ~~V~~vafS~-g~~la~~~~~s~d~tik-lWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg 218 (389)
..+.++++.| +..++++. . +.+. .+| ..|+.-.... .-...+..+.+. ++ +.+++.+..+.+++=.-..|
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~---G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~-~~-g~~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-R---GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQ-PD-GNLWMLARGGQIRFNDPDDL 245 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-C---ceEEEEcC-CCCCeEEEeeCCCcccceeeeEc-CC-CCEEEEecCCEEEEccCCCC
Confidence 4688999995 44555442 2 2332 222 2233333332 112445777776 43 44445556677754333344
Q ss_pred eEEEEccc----CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 219 ELMEVSRT----EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 219 ~~~~~l~g----h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
+--+...- -...+.+++|.|++++++.+.+|.|. .-.+ |+--+.+..+... + ...+.+.|-.+++.+|.|.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~-~-~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEV-P-SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCC-C-cceEEEEEeCCCceEEECC
Confidence 43221111 22357889999999998888888773 4555 6654444321111 1 1257888888889988864
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=81.02 E-value=69 Score=33.67 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=86.9
Q ss_pred CeEE-EEecCCCeEEEEeCC----CCeEEEEecC------------CcEEEEEEcCCceEEEEecCCC---CeeEEEEEc
Q 016446 113 GKVL-TYSAQDSIYKVFDLK----NYTMLYSISD------------KHVQEIKISPGIMLLIFNRSSS---HVPLKILSI 172 (389)
Q Consensus 113 G~~L-as~s~D~tiklWdl~----~g~~l~tl~~------------~~V~~vafS~g~~la~~~~~s~---d~tiklWd~ 172 (389)
.++| +.|=..+.|.+-|+. ..++..++.. +.+.++. +|++++++-.+.. -+-+-+.|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp--~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP--DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S--S--EEEEEEEETTS-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC--CccEEEEeccCCCCCCCCcEEEEcC
Confidence 4444 455478899999987 2334455532 1222221 2556655433221 134566676
Q ss_pred CCCeEEEEEeecCC-ce--eEEEEEecCCCeEEEEe--------------------CCCcEEEEECCCCeEEEEcccC--
Q 016446 173 EDGTVLKVFYHLLH-RN--KKVDFIEQFNEKLLVKQ--------------------ENENLQILDVRNAELMEVSRTE-- 227 (389)
Q Consensus 173 ~tG~~l~tl~~~~~-~~--~~v~f~~~~~~~l~~~s--------------------~D~tIklWd~~tg~~~~~l~gh-- 227 (389)
+|-+.+..-+...+ .- +.+-+. |....+++++ ..+++.+||+.+++.+|++.=-
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 66666555442111 11 333343 3334555543 3589999999999999997432
Q ss_pred CCceEEEEEc--CCCcEEEEE-c-CCeEEEEeC-C-Cc----EEEEeccC--cCC---c--------CCCCeeEEEECCC
Q 016446 228 FMTPSAFIFL--YENQLFLTF-R-NRTVAVWNF-R-GE----LVTSFEDH--LLW---H--------PDCNTNNIYITSD 284 (389)
Q Consensus 228 ~~~v~sv~fs--pdg~~laS~-s-D~tIklWd~-~-G~----~l~tl~gh--~~~---~--------~~~~v~sv~fSpd 284 (389)
...+-.|.|. |+...=.++ . ..+|-+|-. + |+ -+-++..- ..| . +. -|.+|.+|.|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~-LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP-LITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC-ceEeEEEccC
Confidence 2356678885 445543333 3 666655544 3 43 22222211 111 0 11 2689999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.++|--.+.= +|.||-+||..
T Consensus 323 DrfLYvs~W~----------~GdvrqYDISD 343 (461)
T PF05694_consen 323 DRFLYVSNWL----------HGDVRQYDISD 343 (461)
T ss_dssp S-EEEEEETT----------TTEEEEEE-SS
T ss_pred CCEEEEEccc----------CCcEEEEecCC
Confidence 9999988874 59999999975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=80.46 E-value=67 Score=32.27 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=93.6
Q ss_pred EEEEEEcCCceEEEEecCCCCeeEEEEEcC------CCeE-EEEEeec-----CCceeEEEEEec------C-----CCe
Q 016446 144 VQEIKISPGIMLLIFNRSSSHVPLKILSIE------DGTV-LKVFYHL-----LHRNKKVDFIEQ------F-----NEK 200 (389)
Q Consensus 144 V~~vafS~g~~la~~~~~s~d~tiklWd~~------tG~~-l~tl~~~-----~~~~~~v~f~~~------~-----~~~ 200 (389)
=|.|+|+|+..+-++. ..-++..|+|.. ..+. +-+++.. .....-+.|+.- . ...
T Consensus 25 ~WGia~~p~~~~WVad--ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYRPGGPFWVAN--TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEecCCCCEEEec--CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4789999866665653 334688888875 2222 3333310 012244455411 1 123
Q ss_pred EEEEeCCCcEEEEECCCCeE---E--EEc-ccCCCceEE-EEEc--CCCcEEEEEc--CCeEEEEeCCCcEEEE---ecc
Q 016446 201 LLVKQENENLQILDVRNAEL---M--EVS-RTEFMTPSA-FIFL--YENQLFLTFR--NRTVAVWNFRGELVTS---FED 266 (389)
Q Consensus 201 l~~~s~D~tIklWd~~tg~~---~--~~l-~gh~~~v~s-v~fs--pdg~~laS~s--D~tIklWd~~G~~l~t---l~g 266 (389)
++..++||||-=|+..-+.. . ..+ ++-...|+. +|+- +.+.+|-.+. .++|.++|-+-..+.+ +.+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56788999999998643332 1 112 122234432 4554 3355555554 8999999977333221 221
Q ss_pred CcCCcCCCCeeEEEECC------CCCEEEEEecCCCccc--ccCCCCCeEEEEeCCCCeEEEEe
Q 016446 267 HLLWHPDCNTNNIYITS------DQDLIISYCKAEPEDQ--WMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSp------dG~~laS~s~D~~~~~--~~~s~D~tIklWd~~tg~~l~tl 322 (389)
-.- -.-|.| .|++.+++-.-+++.+ +.+.--|.|.++| ..|++++.+
T Consensus 183 P~i--------PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~ 237 (336)
T TIGR03118 183 PAL--------PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRV 237 (336)
T ss_pred CCC--------CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEe
Confidence 110 112222 6888888876544333 5555558999999 469999988
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 389 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 51/330 (15%), Positives = 104/330 (31%), Gaps = 111/330 (33%)
Query: 45 EVIRSLFYNKN-NDSLITVS-VYAS---DNFSSLKCR---------------STKIEYIR 84
+R L +K + L+ + V + + F+ L C+ + +I
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 85 RGKPDSGFALFESESL--KWPGFVEFD------DVNGKVLTYSA---QDSIYKVFDLKNY 133
E +SL K+ D N + L+ A +D + N+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNW 347
Query: 134 TMLYSISDKHVQEIKIS-----PGIM------LLIFNRSSSHVPLKILSIEDGTVLKVFY 182
+ DK I+ S P L +F S+H+P +LS+ +
Sbjct: 348 --KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSL--------IW 396
Query: 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQI------LDVR--NAELMEVSRT---EFMTP 231
+ ++ + + + ++ LV+++ + I L+++ + R+ + P
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 232 SAF-------------IFLY--------EN--------QLFLTFR------NRTVAVWNF 256
F + + E+ +FL FR WN
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 257 RGELVTSFEDHLLWHPDCNTNNIYITSDQD 286
G ++ + + + P YI D D
Sbjct: 517 SGSILNTLQQLKFYKP-------YIC-DND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 82/290 (28%)
Query: 121 QDSIYKVFDLKNYT-MLYSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 178
+D+ FD K+ M SI S + + I +S L
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--------------------AVSGTL 65
Query: 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238
++F+ LL + +++ +++F E++L + N LM +TE PS +Y
Sbjct: 66 RLFWTLLSKQEEM--VQKFVEEVL--RINYKF---------LMSPIKTEQRQPSMMTRMY 112
Query: 239 ENQLFLTFRNRTVAVWN----F------RGELVTSFEDHLL-WHPDCNTNNIYITSD--- 284
Q R+R +N F R + LL P + D
Sbjct: 113 IEQ-----RDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRP-----AKNVLIDGVL 159
Query: 285 ----QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340
+ + C + M+ +N+ + + + + ++ ++D S S
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS- 217
Query: 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV--HVWS 388
+ SS I+ + ++ L + LV +V +
Sbjct: 218 ------DHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVLLNVQN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.98 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.98 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.98 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.98 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.96 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.95 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.94 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.94 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.93 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.93 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.92 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.92 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.89 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.88 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.86 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.84 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.84 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.83 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.82 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.81 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.81 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.79 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.78 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.78 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.77 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.76 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.74 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.68 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.68 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.65 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.64 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.63 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.6 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.58 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.54 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.54 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.54 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.54 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.53 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.52 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.51 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.51 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.5 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.45 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.45 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.38 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.17 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.15 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.12 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.04 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.02 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.99 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.98 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.97 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.97 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.91 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.89 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.87 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.84 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.84 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.82 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.69 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.68 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.65 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.62 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.6 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.6 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.54 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.51 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.49 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.46 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.46 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.45 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.45 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.43 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.42 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.38 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.38 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.33 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.31 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.2 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.18 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.12 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.07 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.05 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.75 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.72 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.71 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.65 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.65 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.64 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.62 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.62 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.59 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.59 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.2 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.18 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.15 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.72 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.63 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.61 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.45 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.45 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.38 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.82 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.55 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.87 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.09 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.99 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.11 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.97 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.64 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.53 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 91.96 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.92 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.15 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.67 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.11 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.67 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.66 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 88.24 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 88.19 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 87.82 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 87.4 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 83.63 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 83.5 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 82.81 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.69 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 82.1 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 81.25 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 80.91 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-55 Score=457.30 Aligned_cols=356 Identities=10% Similarity=0.103 Sum_probs=288.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
..|..+.|+ |++||+++.||+|||||..+++ ++.++.+|. ..|++|+|+|||+.|++++.+.... ..++
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~------~~v~ 132 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERF------GHVF 132 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCS------EEEE
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC-CceEEEEECCCCCEEEEEECCCCce------eEEE
Confidence 568999999 9999999999999999986544 556788764 8999999999999999865322112 4566
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceE
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIML 155 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~l 155 (389)
+|+ .|+.. ..+ ..+...+.+|+|+ |+++ +||+|+.|++|||||+.+++++.++. ...|++|+|| +|++|
T Consensus 133 ~wd--~~~~~--~~l--~gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 133 LFD--TGTSN--GNL--TGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp ETT--TCCBC--BCC--CCCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred Eee--CCCCc--cee--cCCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence 676 45542 112 2355567889998 8887 69999999999999999999998886 4689999999 58888
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEe-------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE------
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------ 222 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~-------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~------ 222 (389)
|+++ .|++|||||+.+|+++.++. +|.+.+..|+|+ |++.+|++++.|++|||||++++++++
T Consensus 206 as~s---~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 206 ASTG---GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp EEEE---TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEE---CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 8774 56899999999999999995 799999999998 788999999999999999999887654
Q ss_pred -------------------------------------EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 223 -------------------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 223 -------------------------------------~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
++.+|...|++++|+|||++|+|++ |++|++||+. |++...
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 3458999999999999999999999 9999999996 777655
Q ss_pred e-ccCcCCc--------------------------------------------------C--------------------
Q 016446 264 F-EDHLLWH--------------------------------------------------P-------------------- 272 (389)
Q Consensus 264 l-~gh~~~~--------------------------------------------------~-------------------- 272 (389)
+ .+|...+ +
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 4 2332110 0
Q ss_pred ------CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCcc
Q 016446 273 ------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 273 ------~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
...+.+++|||||++||+|+.| ++|||||+.++++ +.+ .+|+..+....+++++...++.
T Consensus 442 ~~~~~~~~~v~~va~spdg~~lasgs~D-----------~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQFVAVGGQD-----------SKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEETT-----------SEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred eeeeecCCCceEEEEeCCCCEEEEeCCC-----------CeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEE
Confidence 0125789999999999999875 9999999987764 345 7898777777788887766666
Q ss_pred ccccccceeccc-----------ccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 345 KLNKSSYIRSTV-----------GEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 345 ~~~~~~~~~~~~-----------~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+++.++|+.. ++|...|++|+|||||++|||||.|++||||+.
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 666665555432 337889999999999999999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=452.73 Aligned_cols=348 Identities=9% Similarity=0.018 Sum_probs=281.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
|..+..+.|+ |++||+++ +++|+||++++++.++++.+|. +.|.+++|||||++||+ ++.| .+++|
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~las----g~~d------~~v~l 85 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS-HQTTVAKTSPSGYYCAS----GDVH------GNVRI 85 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS-SCEEEEEECTTSSEEEE----EETT------SEEEE
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCC-CceEEEEECCCCcEEEE----EeCC------CCEEE
Confidence 5667778888 88999988 5799999998899999999975 89999999999999999 4577 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC----CeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI 153 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D----~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~ 153 (389)
||+.+++...... + ..+.+.+.+|+|+ |||++||+++.| ++|++|| +++++.++. ...|++|+|+| +.
T Consensus 86 Wd~~~~~~~~~~~-~-~~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 86 WDTTQTTHILKTT-I-PVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP 160 (611)
T ss_dssp EESSSTTCCEEEE-E-ECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred eECCCCcceeeEe-e-cccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCC
Confidence 9987665411111 1 2355678899998 999999998876 4899998 566665554 56899999996 44
Q ss_pred -eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc-------
Q 016446 154 -MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR------- 225 (389)
Q Consensus 154 -~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~------- 225 (389)
+||++ +.|++|||||..+++++++|.+|...|.+|+|+ |++..|++++.|++|+|||+.+|+++.++.
T Consensus 161 ~~l~s~---s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 161 FRIISG---SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp CEEEEE---ETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred eEEEEE---eCCCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 57776 456899999999999999999999999999998 788999999999999999999999999984
Q ss_pred cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe---------------------------------------
Q 016446 226 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF--------------------------------------- 264 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl--------------------------------------- 264 (389)
+|...|++++|+|||++|||++ |++|||||++ ++++.++
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE
T ss_pred ccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 8999999999999999999999 9999999996 8766544
Q ss_pred ----ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe-cCCCCCCCcccccCCCC
Q 016446 265 ----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSS 339 (389)
Q Consensus 265 ----~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl-~gH~~~~~~~~~~~~~~ 339 (389)
.+|... |++++|||||++|||++.| ++||+||+.+|+++..+ .+|...+....++ +++
T Consensus 317 ~~~~~gh~~~-----v~~l~~spdg~~l~s~s~D-----------~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s-~~~ 379 (611)
T 1nr0_A 317 DQVRYGHNKA-----ITALSSSADGKTLFSADAE-----------GHINSWDISTGISNRVFPDVHATMITGIKTT-SKG 379 (611)
T ss_dssp EEEECCCSSC-----EEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEECSSCSCSSCEEEEEEC-TTS
T ss_pred ceEEcCCCCC-----EEEEEEeCCCCEEEEEeCC-----------CcEEEEECCCCceeeecccCCcceEEEEEEC-CCC
Confidence 467665 8999999999999999875 99999999999998877 5676543332222 222
Q ss_pred CCCccccccccceecccc------------------------------------------------cccCCEEEEEECCC
Q 016446 340 TGKSKKLNKSSYIRSTVG------------------------------------------------EALEDITSLFYDEE 371 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~V~svafSpd 371 (389)
...+...+++.++|+... .+...|++++||||
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 333333333333332111 12346899999999
Q ss_pred CCEEEEecCCCcEEEcc
Q 016446 372 RNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 372 g~~LaSgs~D~tIrlW~ 388 (389)
|++||+|+.|++|||||
T Consensus 460 g~~lasgs~D~~v~lwd 476 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYK 476 (611)
T ss_dssp SCEEEEEETTSEEEEEE
T ss_pred CCEEEEeCCCCeEEEEE
Confidence 99999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=434.45 Aligned_cols=310 Identities=13% Similarity=0.241 Sum_probs=276.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..|.|+ ++.|++++.|+++++|+. ++++++++.+|. ..|++++|+|||+.|+++ +.| ..+++
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~----~~d------~~i~~ 329 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVWGVAFSPDGQTIASA----SDD------KTVKL 329 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC-CCeEEEEECCCCCEEEEE----eCC------CeEEE
Confidence 3568889998 889999999999999998 599999999875 899999999999999994 467 78889
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
|++...++ ..+ ..+...+.+++|+ |||++||+++.|++|++||. +++++.++. ...|.+++|| +|++||+
T Consensus 330 w~~~~~~~---~~~--~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 330 WNRNGQHL---QTL--TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp EETTSCEE---EEE--CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EeCCCCee---EEE--eCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 99644332 112 2344456789998 99999999999999999995 788887775 5689999999 6888988
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
++ .|++|++|| .+|++++++.+|...+..++|+ |++..+++++.|++|++||+ ++++++.+.+|...|.+++|+
T Consensus 403 ~~---~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 403 AS---DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp EE---TTSEEEEEC-TTCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred Ee---CCCEEEEEe-CCCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 74 458999999 5789999999999999999998 78899999999999999996 788999999999999999999
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
|||++||+++ |++|+|||.+|++++++.+|... |.+|+|||||++||+++.| ++||||| .+|
T Consensus 477 pd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~d-----------g~v~lwd-~~~ 539 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASDD-----------KTVKLWN-RNG 539 (577)
T ss_dssp TTSCEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSSCEEEEETT-----------SEEEEEC-TTS
T ss_pred CCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCC-----EEEEEEcCCCCEEEEEECc-----------CEEEEEe-CCC
Confidence 9999999998 99999999999999999999887 8999999999999999865 9999999 579
Q ss_pred eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 317 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 317 ~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++++++.+|+ ..|++|+|+|||++|+||+.|++|++||
T Consensus 540 ~~~~~~~~h~----------------------------------~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 QLLQTLTGHS----------------------------------SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECCS----------------------------------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCC----------------------------------CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999998 5999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=409.80 Aligned_cols=288 Identities=15% Similarity=0.185 Sum_probs=256.4
Q ss_pred ceeeeeeecCCcceEEEEEEeeC----CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEE
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVE 107 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spd----g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~ 107 (389)
|.+++.+++|. +.|++|+|+|+ +++||+ ++.| .+++||++..+++. ..+. ..+...+.+++
T Consensus 22 g~~~~~~~~H~-~~V~~v~~~~~~~~~~~~l~t----gs~D------~~v~vW~~~~~~~~---~~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 22 GILFKQEQAHD-DAIWSVAWGTNKKENSETVVT----GSLD------DLVKVWKWRDERLD---LQWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEEEEETTSSS-SCEEEEEEC-------CEEEE----EETT------SCEEEEEEETTEEE---EEEEECCCSSCEEEEE
T ss_pred hheeeecccCC-CcEEEEEEecCCCCCCCEEEE----EcCC------CCEEEEECCCCCee---eeeeeccCCCCEEEEE
Confidence 66777778764 99999999985 668999 5577 88999998776541 1222 24555677899
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
|+ |++++||+++.|++|||||+.+++++.++. ...|++++|+ +|++||++ +.|++|++||+++++++.++..|
T Consensus 88 ~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g---~~dg~v~i~~~~~~~~~~~~~~~ 163 (321)
T 3ow8_A 88 IS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG---THVGKVNIFGVESGKKEYSLDTR 163 (321)
T ss_dssp EC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE---CTTSEEEEEETTTCSEEEEEECS
T ss_pred EC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCcEEEEEcCCCceeEEecCC
Confidence 98 899999999999999999999999998886 3578999999 58888876 45689999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
...+..++|+ |++.+|++++.|++|+|||++++++++++++|...|.+++|+|||++|++++ |++|+|||++ ++++.
T Consensus 164 ~~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 164 GKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred CceEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 8999999998 7889999999999999999999999999999999999999999999999999 9999999997 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
++.+|..+ |.+++|+|||++|||++.| ++|||||+.+++|++++.+|+
T Consensus 243 ~~~~h~~~-----v~~~~~sp~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~h~---------------- 290 (321)
T 3ow8_A 243 TLSGHASW-----VLNVAFCPDDTHFVSSSSD-----------KSVKVWDVGTRTCVHTFFDHQ---------------- 290 (321)
T ss_dssp EECCCSSC-----EEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEECCCS----------------
T ss_pred EEcCCCCc-----eEEEEECCCCCEEEEEeCC-----------CcEEEEeCCCCEEEEEEcCCC----------------
Confidence 99999987 8999999999999999875 999999999999999999998
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|+|||+.|+||+.|++|+|||.
T Consensus 291 ------------------~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 291 ------------------DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------------SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ------------------CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 58999999999999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=418.60 Aligned_cols=294 Identities=16% Similarity=0.256 Sum_probs=261.5
Q ss_pred EEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce
Q 016446 25 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 104 (389)
Q Consensus 25 iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~ 104 (389)
.+.|... .....++.+|. ..|++++|+|+++.|+++ +.| ..++|||+.+|++. . .+ ..+...+.
T Consensus 91 ~~~~~~~-~~~~~~l~gh~-~~V~~~~~~p~~~~l~s~----s~D------g~i~vwd~~~~~~~--~-~l-~~h~~~V~ 154 (410)
T 1vyh_C 91 PKEWIPR-PPEKYALSGHR-SPVTRVIFHPVFSVMVSA----SED------ATIKVWDYETGDFE--R-TL-KGHTDSVQ 154 (410)
T ss_dssp -CCCCCC-SSCSCEEECCS-SCEEEEEECSSSSEEEEE----ESS------SCEEEEETTTCCCC--E-EE-CCCSSCEE
T ss_pred ccccccC-CCceEeecccC-CcEEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCcEE--E-EE-eccCCcEE
Confidence 3445442 44566788875 899999999999999994 577 88999999999862 1 22 23556678
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
+++|+ |+|++||+|+.|++|||||+.+++++.++. ...|.+++|+ +|.+|++++ .|++|++||+++|++++++
T Consensus 155 ~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s---~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 155 DISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp EEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTTCCEEEEE
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCcEEEEE
Confidence 89998 899999999999999999999999998886 4689999999 578888764 5689999999999999999
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC--------------------Cc
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--------------------NQ 241 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd--------------------g~ 241 (389)
.+|...+..+.|+ |++..+++++.|++|++||+.++++...+.+|...|.+++|+|+ |+
T Consensus 231 ~~h~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 231 TGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp ECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred eCCCccEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 9999999999997 77889999999999999999999999999999999999999997 77
Q ss_pred EEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 242 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+|++++ |++|++||+. |+++.++.+|..+ |.+++|+|+|++|+||+.| ++|||||+.+++++
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~g~~l~s~s~D-----------~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCM 373 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCC
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEECCCCc-----EEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceE
Confidence 899999 9999999997 9999999999987 8999999999999999875 99999999999999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.++.+|. ..|++|+|+|++++|||||.|++||+|+.
T Consensus 374 ~~~~~h~----------------------------------~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 KTLNAHE----------------------------------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECCS----------------------------------SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCC----------------------------------CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999998 58999999999999999999999999984
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-52 Score=401.30 Aligned_cols=288 Identities=12% Similarity=0.177 Sum_probs=252.2
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.++.++|.+|. +.|++++|+|||+.|+++ +.| ..++|||+.+++... .+ ..+...+..++|+ |+
T Consensus 45 ~~~~~~l~gH~-~~v~~~~~s~d~~~l~s~----s~D------g~v~iWd~~~~~~~~--~~--~~~~~~v~~~~~s-~~ 108 (340)
T 1got_B 45 MRTRRTLRGHL-AKIYAMHWGTDSRLLLSA----SQD------GKLIIWDSYTTNKVH--AI--PLRSSWVMTCAYA-PS 108 (340)
T ss_dssp CCEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------TEEEEEETTTCCEEE--EE--ECSSSCEEEEEEC-TT
T ss_pred chhheeecCCC-CceEEEEECCCCCEEEEE----eCC------CcEEEEECCCCCcce--Ee--ecCCccEEEEEEC-CC
Confidence 56778899875 899999999999999994 577 899999998887521 11 2344567789998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCCe----EEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~----~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|++||+|+.|++|++||+.+++ +...+. ...|.+++|+|+..+++++ .|++|++||+++|+++.++.+|.+
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s---~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEE---TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEE---CCCcEEEEECCCCcEEEEEcCCCC
Confidence 9999999999999999998753 444553 5689999999766677764 458999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
.+..++|+ |++..+++++.|++|+|||++++++++++.+|...|.+++|+|+|++|++++ |++|+|||+. ++++.++
T Consensus 186 ~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 186 DVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999998 6788999999999999999999999999999999999999999999999999 9999999997 8888887
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
..+... +.|.+++|+|||++|++|+.| ++|+|||+.+++++.++.+|.
T Consensus 265 ~~~~~~---~~v~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~~~~h~------------------ 312 (340)
T 1got_B 265 SHDNII---CGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAGHD------------------ 312 (340)
T ss_dssp CCTTCC---SCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEECCS------------------
T ss_pred ccCCcc---cceEEEEECCCCCEEEEECCC-----------CeEEEEEcccCcEeeEeecCC------------------
Confidence 633221 238999999999999999875 999999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++|+|+|||+.|||||.|++|||||
T Consensus 313 ----------------~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 ----------------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----------------CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 5999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=417.28 Aligned_cols=310 Identities=14% Similarity=0.253 Sum_probs=275.1
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ +++|++++.|++|++|+. +++++.++.+|. ..|.+++|+|||+.|+++ +.| ..+++
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~-~~v~~v~~~~d~~~l~~~----~~d------~~i~~ 288 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVNGVAFRPDGQTIASA----SDD------KTVKL 288 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC-CCEEEEEEcCCCCEEEEE----eCC------CEEEE
Confidence 3568899998 889999999999999998 599999999875 899999999999999994 467 77888
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
|+ ..+++. ..+ ..+...+.+++|+ |||++|++++.|++||+||+. ++.+.++. ...|.+++|+ +|.+||+
T Consensus 289 w~-~~~~~~--~~~--~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 289 WN-RNGQLL--QTL--TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp EE-TTSCEE--EEE--CCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred Ee-CCCcEE--EEE--ecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 98 445531 111 2355567789998 999999999999999999974 55555554 5789999999 5888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
++ .|++|++|| .+|+++.++.+|...+..++|+ |++..|++++.|++|+|||. ++++++++.+|...|++++|+
T Consensus 362 ~~---~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 362 AS---DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EE---TTSEEEEEE-TTCCEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred Ee---CCCEEEEEc-CCCCEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 74 458999999 5789999999999999999998 78899999999999999995 789999999999999999999
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 238 YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 238 pdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
||+++|++++ |++|++||.+++++.++.+|... |.+++|||||++||+++.| ++||||| .+|
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----v~~~~~spd~~~las~~~d-----------~~i~iw~-~~~ 498 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASDD-----------KTVKLWN-RNG 498 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSCEEEEEETT-----------SEEEEEE-TTS
T ss_pred CCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeCC-----------CEEEEEc-CCC
Confidence 9999999998 99999999999999999999886 8999999999999999875 9999999 579
Q ss_pred eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 317 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 317 ~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++++++.+|+ ..|++|+|||||++||+|+.|++|||||
T Consensus 499 ~~~~~~~~h~----------------------------------~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 499 QLLQTLTGHS----------------------------------SSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEECCS----------------------------------SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEeCCC----------------------------------CCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999998 5899999999999999999999999998
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=395.14 Aligned_cols=289 Identities=11% Similarity=0.173 Sum_probs=250.9
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.++.++|.+|. +.|++++|+|||+.||+ ++.| ..++|||+.+++... .+ ..+..++.+++|+ |+
T Consensus 54 ~~~~~~l~gH~-~~V~~~~~s~d~~~l~s----~s~D------g~v~vWd~~~~~~~~---~~-~~~~~~v~~~~~s-p~ 117 (354)
T 2pbi_B 54 MKTRRTLKGHG-NKVLCMDWCKDKRRIVS----SSQD------GKVIVWDSFTTNKEH---AV-TMPCTWVMACAYA-PS 117 (354)
T ss_dssp CCEEEEEECCS-SCEEEEEECTTSSEEEE----EETT------SEEEEEETTTCCEEE---EE-ECSSSCCCEEEEC-TT
T ss_pred cEEEEEecCCC-CeEEEEEECCCCCEEEE----EeCC------CeEEEEECCCCCcce---EE-ecCCCCEEEEEEC-CC
Confidence 45678899975 89999999999999999 4577 899999988887521 11 2344567889998 99
Q ss_pred CeEEEEecCCCeEEEEeCCCC------e--EEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNY------T--MLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g------~--~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
|++||+|+.|+++++|++... . .....|...|.+++|+ ++..|++++ .|++|+|||+++|++++++.+
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s---~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS---GDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCeEEEEEcC
Confidence 999999999999999998643 1 2234467899999999 577888764 458999999999999999999
Q ss_pred cCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE
Q 016446 184 LLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 260 (389)
Q Consensus 184 ~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~ 260 (389)
|...+..++|++. ++..+++++.|++|++||++++++++++.+|...|.+++|+|+|++||+++ |++|||||+. +++
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999743 357888999999999999999999999999999999999999999999999 9999999997 778
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+..+..+... ..+.+++|+|||++|++|+.| ++|+|||+.+|+++.++.+|.
T Consensus 275 ~~~~~~~~~~---~~~~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~l~~h~-------------- 326 (354)
T 2pbi_B 275 VAIYSKESII---FGASSVDFSLSGRLLFAGYND-----------YTINVWDVLKGSRVSILFGHE-------------- 326 (354)
T ss_dssp EEEECCTTCC---SCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCSEEEEECCCS--------------
T ss_pred EEEEcCCCcc---cceeEEEEeCCCCEEEEEECC-----------CcEEEEECCCCceEEEEECCC--------------
Confidence 8877755432 137899999999999999865 899999999999999999998
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++|+|||||++|||||.|++|+||+
T Consensus 327 --------------------~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 --------------------NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------------------CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 5999999999999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=404.65 Aligned_cols=307 Identities=12% Similarity=0.117 Sum_probs=229.3
Q ss_pred EEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC--CCcceeeeeeeEeEeccCCCCCcc
Q 016446 15 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD--NFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~--d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.++....+...+.|++....+ .. |...|++|+|||||++||++|.+... | ..+++|+..+|......
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p----~~-H~~~V~~v~fSpDG~~las~s~d~~~~wd------~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP----AC-MEVQIGAVRYRRDGALLLAASSLSSRTWG------GSIWVFKDPEGAPNESL 86 (357)
T ss_dssp --------------------------C-CCSEEEEEEECSSSCEEEEEECSSSSSCC------EEEEEESSCC---CGGG
T ss_pred eEEecCCCccccccCCCCCCc----cc-ccCCEEEEEECCCCCEEEEEcCCCCcccc------CeEEEEECCCCCcceeE
Confidence 345556677788998764433 23 45899999999999999997643221 3 46778888777763322
Q ss_pred eeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE----e--cCCcEEEEEEc-CCceEEEEecCCCCe
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----I--SDKHVQEIKIS-PGIMLLIFNRSSSHV 165 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t----l--~~~~V~~vafS-~g~~la~~~~~s~d~ 165 (389)
.....++...+.+++|+ ||+++|+ ++.|++|||||+.+++++.. . |...|.+|+|+ +|.+||+++ .|+
T Consensus 87 ~~~~~~~~~~V~~~~~s-~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg 161 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWV-SEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG---KDF 161 (357)
T ss_dssp CSEEEECSSCEEEEEEE-TTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE---TTS
T ss_pred ecccCCCCCCEEEEEEc-CCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe---CCC
Confidence 22223455567889998 8887665 67899999999999886532 2 34689999999 588888774 458
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCC-Cc
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYE-NQ 241 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspd-g~ 241 (389)
+|+|||+++|+++.+|++|...+..|+|+ +++ ..+++++.|++|+|||+++++++..+ ..|...+.+++|+|+ ++
T Consensus 162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s-~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAAC-PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEC-TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEc-cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 99999999999999999999999999998 555 57788999999999999999987765 457778999999997 57
Q ss_pred EEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 242 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
+||+++ |++|+|||+. +++++++.+|... |++++||||| ++|||||.| ++|||||+++|++
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~~lasgs~D-----------~~i~iwd~~~~~~ 304 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQN-----ITGLAYSYHSSPFLASISED-----------CTVAVLDADFSEV 304 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSC-----EEEEEECSSSSCCEEEEETT-----------SCEEEECTTSCEE
T ss_pred eEEEeecccceeEEECCCCcEeEEEecccee-----EEEEEEcCCCCCEEEEEeCC-----------CEEEEEECCCCcE
Confidence 899998 9999999996 9999999999887 8999999998 689998865 9999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC-CCCEEEEecCCCcEEEccC
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~tIrlW~~ 389 (389)
++.+ +|+ ..|++|+||| |+++|||||.|++|++|+.
T Consensus 305 ~~~~-~H~----------------------------------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 305 FRDL-SHR----------------------------------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEC-CCS----------------------------------SCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred eEEC-CCC----------------------------------CCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 8776 798 5899999999 8999999999999999984
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-52 Score=407.76 Aligned_cols=304 Identities=13% Similarity=0.161 Sum_probs=258.7
Q ss_pred CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 22 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
+.++..|+..+.++.++|.+|. +.|++|+|+|+|+.|++ ++.| .+++|||+.+++.. ..+ ..+..
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~-~~V~~~~~sp~~~~l~s----~s~D------~~v~iWd~~~~~~~--~~~--~~h~~ 109 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHS-GKVYSLDWTPEKNWIVS----ASQD------GRLIVWNALTSQKT--HAI--KLHCP 109 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCS-SCEEEEEECTTSSCEEE----EETT------SEEEEEETTTTEEE--EEE--ECCCT
T ss_pred cccccccccceeEEeecccccc-cEEEEEEEcCCCCEEEE----EeCC------CeEEEEECCCCccc--eEE--ecCCC
Confidence 4556678888889999999975 89999999999999999 4577 89999999888651 111 23555
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-------EEEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-------~l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklW 170 (389)
.+.+++|+ |||++||+|+.|++|++||+.+.. +...+ |...|.+++|+| +.+|+++ +.|++|++|
T Consensus 110 ~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~---s~D~~i~~w 185 (380)
T 3iz6_a 110 WVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG---SGDQTCVLW 185 (380)
T ss_dssp TCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE---CTTSCEEEE
T ss_pred CEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE---CCCCcEEEE
Confidence 67889998 999999999999999999986532 22333 456899999995 4568776 556899999
Q ss_pred EcCCCeEEEEE-----eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 171 SIEDGTVLKVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 171 d~~tG~~l~tl-----~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
|+.+|+++.++ .+|...+..++|.++++..+++++.|++|+|||++ ++++++++.+|...|++++|+|+|++|+
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE
Confidence 99999999998 67888899999986678899999999999999998 5688999999999999999999999999
Q ss_pred EEc-CCeEEEEeCC-CcEEEEeccCcCCc--CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 245 TFR-NRTVAVWNFR-GELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~l~tl~gh~~~~--~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
|++ |++|||||+. |+++.++..|.... ....|.+++|||+|++|++|+. ||+|+|||+.+++++.
T Consensus 266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------NGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------TSCEEEEETTTCCEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------CCCEEEEECCCCceEE
Confidence 999 9999999997 99999988764321 0113789999999999999876 4999999999999999
Q ss_pred Ee----cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 321 KI----NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 321 tl----~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
++ .+|. ..|++|+|||||++|||||.|++||||+.
T Consensus 335 ~~~~~~~~h~----------------------------------~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 335 NLGTLQNSHE----------------------------------GRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp EECCSCSSCC----------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEecccCCCC----------------------------------CceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 88 5676 58999999999999999999999999984
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=399.31 Aligned_cols=298 Identities=12% Similarity=0.127 Sum_probs=230.7
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC--CCCCcceeEeeeccc
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLK 101 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g--~~~~~~~l~~~~~~~ 101 (389)
..|.|++....+. . +...|.+++|||||+.|+++| + .+.++|...+|.+... ...........++..
T Consensus 15 ~~r~w~~~~~~~~----~-~~~~v~~~~fs~dG~~l~~~s----d--~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (344)
T 4gqb_B 15 AAREWNLPPNAPA----C-MERQLEAARYRSDGALLLGAS----S--LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA 83 (344)
T ss_dssp --------CCSCS----S-CCSEEEEEEECTTSCEEEEEE----C--CSSSCCCEEEEEESSGGGTTCGGGCSEEEEESS
T ss_pred cccccCCCCCCcc----c-ccCCEEEEEECCCCCEEEEEe----C--CceEEeeceeeeeccccccCCcceeeeeeccCC
Confidence 3578887644432 2 346899999999999998854 3 2455565555544221 111111112223334
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe------cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl------~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
.+.+|+|+ ||+ .|++|+.||+|||||+.+++++..+ |.+.|.+|+|| +|.+||+++ .|++|||||+++
T Consensus 84 ~v~~~~~s-~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~~i~iwd~~~ 158 (344)
T 4gqb_B 84 GVADLTWV-GER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDICIKVWDLAQ 158 (344)
T ss_dssp CEEEEEEE-TTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred CEEEEEEe-CCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCC
Confidence 56789998 786 5778999999999999998855332 35689999999 688898874 458999999999
Q ss_pred CeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcC-CCcEEEEEc-CC
Q 016446 175 GTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY-ENQLFLTFR-NR 249 (389)
Q Consensus 175 G~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fsp-dg~~laS~s-D~ 249 (389)
|+++++|.+|.+.|..++|+ +++ ..+++++.|++|+|||++++++...+. .|...+.+++|+| ++++||+++ |+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAAS-PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEEEEEECCCSSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CcEEEEEcCcCCceEEEEec-CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 99999999999999999998 555 567789999999999999999988874 4666899999998 567899998 99
Q ss_pred eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 250 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 250 tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
+|+|||++ ++++++|++|... |++|+||||| ++|||||.| ++|||||+.+++++ .+.+|+
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~g~~~lasgs~D-----------~~i~vwd~~~~~~~-~~~~H~- 299 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQC-----VTGLVFSPHSVPFLASLSED-----------CSLAVLDSSLSELF-RSQAHR- 299 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSC-----EEEEEECSSSSCCEEEEETT-----------SCEEEECTTCCEEE-EECCCS-
T ss_pred cEEEEECCCCcEEEEEcCCCCC-----EEEEEEccCCCeEEEEEeCC-----------CeEEEEECCCCcEE-EEcCCC-
Confidence 99999997 9999999999987 8999999998 589999875 99999999999876 578998
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEecCCCcEEEccC
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|||||+ +|+|||.|++|++|+.
T Consensus 300 ---------------------------------~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 300 ---------------------------------DFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ---------------------------------SCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ---------------------------------CCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 5899999999997 5789999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=384.10 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=245.3
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG 113 (389)
+..++|.+|. +.|++|+|+|||+.|++ ++.| ..++||++.+++.. ..+ ..+...+..++|+ |+|
T Consensus 4 ~~~~~~~~h~-~~V~~~~fsp~~~~l~s----~~~d------g~v~lWd~~~~~~~--~~~--~~~~~~v~~~~~~-~~~ 67 (304)
T 2ynn_A 4 DIKKTFSNRS-DRVKGIDFHPTEPWVLT----TLYS------GRVELWNYETQVEV--RSI--QVTETPVRAGKFI-ARK 67 (304)
T ss_dssp CCEEEEEEEC-SCEEEEEECSSSSEEEE----EETT------SEEEEEETTTTEEE--EEE--ECCSSCEEEEEEE-GGG
T ss_pred eeEEeecCCC-CceEEEEECCCCCEEEE----EcCC------CcEEEEECCCCcee--EEe--eccCCcEEEEEEe-CCC
Confidence 4566888875 89999999999999999 4577 89999999888651 112 1244456789998 899
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-eEEEEEeecCCcee
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 189 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~~~~~~~ 189 (389)
++|++|+.|++|||||+.+++++.++. ...|.+|+|+ ++.+||++ +.|++|||||++++ ++.+++.+|.+.+.
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEE---CCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 999999999999999999999988885 4689999999 57788876 45689999999988 56688999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcC--CCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fsp--dg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
.++|+|.++..+++++.|++|||||+.++++...+ .+|...+..++|+| ++++|++++ |++|||||++ ++++.+|
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 99998546788999999999999999988775554 46778899999976 889999999 9999999997 9999999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
++|... |..++|+|++++||||+.| |+|||||+.+++++++|.+|.
T Consensus 225 ~~h~~~-----v~~~~~~p~~~~l~s~s~D-----------g~i~iWd~~~~~~~~~~~~~~------------------ 270 (304)
T 2ynn_A 225 EGHMSN-----VSFAVFHPTLPIIISGSED-----------GTLKIWNSSTYKVEKTLNVGL------------------ 270 (304)
T ss_dssp ECCSSC-----EEEEEECSSSSEEEEEETT-----------SCEEEEETTTCCEEEEECCSS------------------
T ss_pred CCCCCC-----EEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCceeeeccCCC------------------
Confidence 999887 8999999999999999875 999999999999999999997
Q ss_pred ccccccceecccccccCCEEEEEECCCCC--EEEEecCCCcEEEcc
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 388 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~--~LaSgs~D~tIrlW~ 388 (389)
..|++++|+|+|. +||+|+.||.+ +|+
T Consensus 271 ----------------~~~~~~~~~~~~~~~~~asg~~~g~~-~~~ 299 (304)
T 2ynn_A 271 ----------------ERSWCIATHPTGRKNYIASGFDNGFT-VLS 299 (304)
T ss_dssp ----------------SSEEEEEECTTCGGGCEEEEETTEEE-EEE
T ss_pred ----------------ccEEEEEECCCCCceEEEEecCCceE-EEE
Confidence 5899999999986 58999887765 543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=380.33 Aligned_cols=297 Identities=10% Similarity=0.119 Sum_probs=248.2
Q ss_pred ceeeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEec
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDD 110 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~ 110 (389)
-++..+|.+|. ..|++|+|+|++ +.|++ ++.| .++++|++...+......+.. ..|...+..++|+
T Consensus 7 ~~l~~~l~gH~-~~V~~l~~~~~~~~~l~s----~s~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s- 74 (319)
T 3frx_A 7 LVLRGTLEGHN-GWVTSLATSAGQPNLLLS----ASRD------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74 (319)
T ss_dssp EEEEEEECCCS-SCEEEEEECSSCTTEEEE----EETT------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-
T ss_pred EEEEEEEcccc-ceEEEEEccCCCccEEEE----ecCC------ccEEEecCCCCCccccccceEEeCCcccEEEEEEC-
Confidence 34566888875 999999999975 78999 4578 889999986544311222222 2455567789998
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
|||++|++|+.|++|||||+.+++++.++. ...|.+++|+ ++.+|++++ .|++||+||++ ++++.++.+|...
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~D~~i~vwd~~-~~~~~~~~~h~~~ 150 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS---RDKTIKVWTIK-GQCLATLLGHNDW 150 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE---TTSCEEEEETT-SCEEEEECCCSSC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECC-CCeEEEEeccCCc
Confidence 999999999999999999999999988875 4689999999 578888764 56899999985 7899999999999
Q ss_pred eeEEEEEec-----CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE
Q 016446 188 NKKVDFIEQ-----FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 260 (389)
Q Consensus 188 ~~~v~f~~~-----~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~ 260 (389)
+..+.|.+. ++..+++++.|++|++||++++++...+.+|...|.+++|+|+|++|||++ |++|+|||+. +++
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999742 234788899999999999999999999999999999999999999999999 9999999997 999
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
+.++..|. . |.+++|||||++||+++. +.|++|++.++.++..++.+...
T Consensus 231 ~~~~~~~~-~-----v~~~~~sp~~~~la~~~~------------~~i~v~~~~~~~~~~~~~~~~~~------------ 280 (319)
T 3frx_A 231 MYTLSAQD-E-----VFSLAFSPNRYWLAAATA------------TGIKVFSLDPQYLVDDLRPEFAG------------ 280 (319)
T ss_dssp EEEEECCS-C-----EEEEEECSSSSEEEEEET------------TEEEEEEETTEEEEEEECCCCTT------------
T ss_pred EEEecCCC-c-----EEEEEEcCCCCEEEEEcC------------CCcEEEEeCcCeeeeccCccccc------------
Confidence 99998764 3 799999999999999864 57999999999999988765410
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
....+...|.+++|||||++||+|+.|++|||||.
T Consensus 281 --------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 281 --------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp --------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 00112257999999999999999999999999983
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=387.77 Aligned_cols=291 Identities=12% Similarity=0.141 Sum_probs=243.7
Q ss_pred cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
.-+++.++.+|+...|++++|||||+.||+ ++.| ..++||++..++... ...+...+...+.+|+|+ |
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las----~~~D------~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~s-p 71 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLAS----CGGD------RRIRIWGTEGDSWIC-KSVLSEGHQRTVRKVAWS-P 71 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEE----EETT------SCEEEEEEETTEEEE-EEEECSSCSSCEEEEEEC-T
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEE----EcCC------CeEEEEEcCCCccee-eeeeccccCCcEEEEEEC-C
Confidence 357888999987459999999999999999 4577 889999988775311 111223455667889998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC---eEEEEEee
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYH 183 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG---~~l~tl~~ 183 (389)
||++||+|+.|++|+|||+.+++ ++.++. ...|.+|+|+ +|.+||+++ .|++|++||+.++ +++.++.+
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999999999999998764 667775 4689999999 588888874 4589999999876 56788899
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe--EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC---
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--- 257 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~--- 257 (389)
|...+..++|+ |++..|++++.|++|+|||+++++ +..++.+|...|++++|+|+|++|||++ |++|+|||..
T Consensus 149 h~~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 149 HTQDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227 (345)
T ss_dssp CCSCEEEEEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred cCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence 99999999998 788999999999999999999885 5688999999999999999999999999 9999999951
Q ss_pred -------------CcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe------
Q 016446 258 -------------GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK------ 317 (389)
Q Consensus 258 -------------G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~------ 317 (389)
.+|+.++.+ |... |++++|+|++.+||+++.| ++||+||+.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~d-----------~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGFHSRT-----IYDIAWCQLTGALATACGD-----------DAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSSCSSC-----EEEEEECTTTCCEEEEETT-----------SCEEEEEECTTSCTTSCC
T ss_pred CCccceeeccCCccceeEEecCCCCCc-----EEEEEEecCCCEEEEEeCC-----------CeEEEEEeCCCCCcceee
Confidence 246778887 6654 8999999999999999875 899999987653
Q ss_pred ---EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEcc
Q 016446 318 ---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 318 ---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~ 388 (389)
....+.+|. ..|++|+|+|++ .+|||||.||+|+||+
T Consensus 292 ~~~~~~~~~~h~----------------------------------~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 292 FSLTAHLHQAHS----------------------------------QDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEEEETTSSS----------------------------------SCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEeeeccccc----------------------------------CcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 123345666 699999999998 4999999999999997
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=386.66 Aligned_cols=278 Identities=16% Similarity=0.247 Sum_probs=240.4
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee----------------ecccCceeE
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES----------------ESLKWPGFV 106 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~----------------~~~~~~~~v 106 (389)
|...|.+|+|||||++||+ +. + ..++||++.+|+... .+..+ .....+.++
T Consensus 63 h~~~V~~v~fspdg~~la~----g~-~------~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v 129 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLAT----GC-N------KTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSV 129 (393)
T ss_dssp CSSCCCEEEECTTSSEEEE----EC-B------SCEEEEETTTCCEEE--EECC-----------------CCCCBEEEE
T ss_pred CCCEEEEEEECCCCCEEEE----Ec-C------CcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEE
Confidence 4589999999999999998 33 3 478899998887621 11000 011236789
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+|+ |||++||+|+.|++|+|||+.+++++.++. ...|.+++|+ +|.+|++++ .|++|++||+.+|+++.++..
T Consensus 130 ~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~ 205 (393)
T 1erj_A 130 CFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS---GDRTVRIWDLRTGQCSLTLSI 205 (393)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEEC
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec---CCCcEEEEECCCCeeEEEEEc
Confidence 998 899999999999999999999999988886 4689999999 588888764 468999999999999999974
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-------ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-------~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
...+..++|++.++..+++++.|++|+|||++++++++.+ .+|...|++++|+|+|++|++++ |++|+|||
T Consensus 206 -~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 -EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp -SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4778999998557889999999999999999999998877 68999999999999999999999 99999999
Q ss_pred CC-------------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 256 FR-------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 256 ~~-------------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
++ +.+..++.+|... |.+++|+|+|++|+||+.| ++|++||+.+|+++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~sgs~D-----------~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSKD-----------RGVLFWDKKSGNPLLML 348 (393)
T ss_dssp C---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEETT-----------SEEEEEETTTCCEEEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCc-----EEEEEECCCCCEEEEEeCC-----------CeEEEEECCCCeEEEEE
Confidence 84 3567889999887 8999999999999999875 99999999999999999
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC------CCCEEEEecCCCcEEEcc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE------ERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp------dg~~LaSgs~D~tIrlW~ 388 (389)
++|. ..|.+++|+| ++++|||||.|++||||+
T Consensus 349 ~~h~----------------------------------~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 349 QGHR----------------------------------NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ECCS----------------------------------SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCC----------------------------------CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 9998 5899999986 799999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=392.94 Aligned_cols=276 Identities=10% Similarity=0.160 Sum_probs=246.9
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|..+.|+ +.+||+++.||+|++||..+|++++++.+|. +.|.+|+|+|+|+.|++ ++.| .+++|
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~-~~V~~v~~~~~~~~l~s----gs~D------~~i~i 176 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT-DSVQDISFDHSGKLLAS----CSAD------MTIKL 176 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEE----EETT------SCCCE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEE----EeCC------CeEEE
Confidence 4689999999 8899999999999999999999999999975 89999999999999999 4577 78999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
||+..+++. ..+ ..+...+.+++|+ |+|++|++|+.|++|++||+.+++++.++. ..+|.+++|+ +|.+|++
T Consensus 177 wd~~~~~~~--~~~--~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 177 WDFQGFECI--RTM--HGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp EETTSSCEE--ECC--CCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCcee--EEE--cCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 999887752 111 2344557889998 899999999999999999999999998886 4689999999 6888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-------------------CCCeEEEEeCCCcEEEEECCCC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-------------------FNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-------------------~~~~l~~~s~D~tIklWd~~tg 218 (389)
++ .|++|++||+.+++++.++.+|.+.+..++|++. ++..+++++.|++|+|||+++|
T Consensus 252 ~s---~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 252 CS---NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred Ec---CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 64 4589999999999999999999999999999842 1557888999999999999999
Q ss_pred eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 219 ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 219 ~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+++.++.+|...|.+++|+|+|++|+|++ |++|++||+. ++++.++.+|... |.+++|+|+|++|||||.|
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~sgs~D-- 401 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSVD-- 401 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEETT--
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCCCCEEEEEeCC--
Confidence 99999999999999999999999999999 9999999996 9999999999987 8999999999999999875
Q ss_pred cccccCCCCCeEEEEeC
Q 016446 297 EDQWMEGSAGSINVSSI 313 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~ 313 (389)
++|||||+
T Consensus 402 ---------~~i~vW~~ 409 (410)
T 1vyh_C 402 ---------QTVKVWEC 409 (410)
T ss_dssp ---------SEEEEEC-
T ss_pred ---------CcEEEEeC
Confidence 99999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=379.06 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=272.3
Q ss_pred ccEEEEEee--cc-EEEEEecCceEEEEec----ccce------eeeeeec----C-----CcceEEEEEEeeCCCEEEE
Q 016446 4 TKVIEIVAA--RD-IVFALAHSGVCAAFSR----ETNR------RICFLNV----S-----PDEVIRSLFYNKNNDSLIT 61 (389)
Q Consensus 4 ~~v~~i~~~--~~-~~a~~~~~gtiklW~~----~tg~------~l~tl~~----~-----~~~~v~sv~~spdg~~l~s 61 (389)
..|..+.|+ ++ +||+++.||+|++|++ .+|+ ....+.. + |.+.|.+++|+|+|+.|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 578889999 77 9999999999999999 8888 5655554 1 4579999999999999999
Q ss_pred EEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC
Q 016446 62 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD 141 (389)
Q Consensus 62 ~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~ 141 (389)
+ +.| ..+++|+ ..|+.. . .+ ..+...+.+++|+ |+|++|++++.|++|++||+.+++++..+..
T Consensus 126 ~----~~d------g~i~i~~-~~~~~~--~-~~-~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 126 G----VEN------GELRLWN-KTGALL--N-VL-NFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp E----ETT------SCEEEEE-TTSCEE--E-EE-CCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred E----eCC------CeEEEEe-CCCCee--e-ec-cCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 4 466 7888998 566541 1 11 2355567889998 8999999999999999999999999888763
Q ss_pred --Cc---------------EEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 142 --KH---------------VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 142 --~~---------------V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
.. |.+++|+|+..+++++ .|+.|++||+.+++++.++..|...+..++|+ |++..++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 265 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSA 265 (425)
T ss_dssp C---------------CCCBSCCEEEETTEEEEEC---GGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCCEEEEEc---CCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEEEE
Confidence 33 8999999777787763 45899999999999999999999999999998 778899999
Q ss_pred eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 205 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 205 s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++++ |++|++||+. ++++..+.+|... |.+++|+
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~s 339 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGRIS 339 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEEEC
T ss_pred cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEEEc
Confidence 999999999999999999999999999999999999 888888 9999999996 9999999999876 8999999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe--------------------EEEEecCCCCCCCcccccCCCCCCC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------------------CLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~--------------------~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
|||++||+++.| ++|+|||+.+++ ++.++.+|...
T Consensus 340 ~~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 394 (425)
T 1r5m_A 340 QDGQKYAVAFMD-----------GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN-------------- 394 (425)
T ss_dssp TTSSEEEEEETT-----------SCEEEEECHHHHC--------------CEECCEEEEECCTTCC--------------
T ss_pred CCCCEEEEEECC-----------CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC--------------
Confidence 999999999865 899999999999 88999988610
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++++|+|||++||+|+.||+|++|+.
T Consensus 395 ------------------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 395 ------------------DYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------------------CCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ------------------CceEEEEccCCCceEEEEecCceEEEEee
Confidence 18999999999999999999999999984
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=375.55 Aligned_cols=289 Identities=19% Similarity=0.178 Sum_probs=235.7
Q ss_pred cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee-cccCceeEEEec
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDD 110 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~-~~~~~~~v~Fs~ 110 (389)
+.+++++|.+|. +.|++++|+|+ .||+ ++.| ..++||++..++.. ....+... +...+.+|+|+
T Consensus 3 ~~~~~~~~~~h~-~~v~~~~~s~~--~las----~~~D------~~i~lw~~~~~~~~-~~~~~~~~~h~~~v~~v~~s- 67 (330)
T 2hes_X 3 SINLIKSLKLYK-EKIWSFDFSQG--ILAT----GSTD------RKIKLVSVKYDDFT-LIDVLDETAHKKAIRSVAWR- 67 (330)
T ss_dssp CCEEEEEEECCS-SCEEEEEEETT--EEEE----EESS------SCEEEEECSSSCCE-EEEEECTTCCCSCEEEEEEC-
T ss_pred ccccceeeccCC-CceeeeccCCC--EEEE----EcCC------CEEEEEEecCCCeE-EEEEEecCCccCCEEEEEEC-
Confidence 467889999875 89999999997 8888 4577 88999998876431 01122112 55567889998
Q ss_pred CCCeEEEEecCCCeEEEEeCC-------CCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC-C---Ce
Q 016446 111 VNGKVLTYSAQDSIYKVFDLK-------NYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-D---GT 176 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~-------~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~-t---G~ 176 (389)
|+|++||+|+.|++|||||+. +++++.++. ...|.+|+|| +|.+||+++ .|++|+|||+. . .+
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s---~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS---RDKSVWIWETDESGEEYE 144 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE---TTSCEEEEECCTTCCCCE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEeccCCCCCeE
Confidence 899999999999999999984 345667775 4689999999 588888874 46899999994 2 37
Q ss_pred EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--eEEEEcccCCCceEEEEEcCC--CcEEEEEc-CCeE
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTV 251 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg--~~~~~l~gh~~~v~sv~fspd--g~~laS~s-D~tI 251 (389)
++.++.+|...+..|+|+ |++..|++++.|++|||||+.++ +++.++.+|...|++++|+|+ +.+|+|++ |++|
T Consensus 145 ~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp EEEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred EEEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 889999999999999998 78889999999999999999877 789999999999999999999 78999998 9999
Q ss_pred EEEeCC-C--------cEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe--EE
Q 016446 252 AVWNFR-G--------ELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CL 319 (389)
Q Consensus 252 klWd~~-G--------~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~--~l 319 (389)
||||+. + +++.++.+ |..+ |.+|+|+|++ +|||++.| ++|+|||+.+|+ ++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~~-~l~s~~~d-----------g~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQ-----VYNVAWGFNG-LIASVGAD-----------GVLAVYEEVDGEWKVF 286 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSC-----EEEEEECTTS-CEEEEETT-----------SCEEEEEEETTEEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccc-----eEEEEEcCCC-EEEEEeCC-----------CEEEEEEcCCCceEEE
Confidence 999986 4 56777776 7766 8999999876 78888765 999999998884 34
Q ss_pred EE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC--CCCEEEEecCCCcEEEccC
Q 016446 320 AK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp--dg~~LaSgs~D~tIrlW~~ 389 (389)
.. +.+|.. ..|++|+|+| ||++|||||.|++||||+.
T Consensus 287 ~~~~~~h~~---------------------------------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 287 AKRALCHGV---------------------------------YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEESCTTTT---------------------------------SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ecccccccc---------------------------------ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 33 467761 2899999999 7999999999999999984
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=372.55 Aligned_cols=275 Identities=15% Similarity=0.140 Sum_probs=243.1
Q ss_pred cccEEEEEee------ccEEEEEecCceEEEEeccccee--eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee
Q 016446 3 RTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 74 (389)
Q Consensus 3 ~~~v~~i~~~------~~~~a~~~~~gtiklW~~~tg~~--l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~ 74 (389)
...|.+|.|+ +++||+++.|++||+|+..++++ ..++.+|. ..|.+++|+|++..|++ ++.|
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~-~~v~~~~~~~~~~~l~s----~s~D----- 101 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ-LGVVSVDISHTLPIAAS----SSLD----- 101 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECSSSSEEEE----EETT-----
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC-CCEEEEEECCCCCEEEE----EeCC-----
Confidence 3578999986 46899999999999999876654 44678875 89999999999999999 4577
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-C
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-P 151 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~ 151 (389)
..++|||+.+|+.. . .+ ..+...+..++|+ |||++||+++.|++|++||+.++++..++. ...|.+++|+ +
T Consensus 102 -~~i~lWd~~~~~~~--~-~~-~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 102 -AHIRLWDLENGKQI--K-SI-DAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp -SEEEEEETTTTEEE--E-EE-ECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred -CcEEEEECCCCCEE--E-EE-eCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 89999999988751 1 11 1233445679998 999999999999999999999999888775 4689999999 5
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
|.+||+++ .|++|++||+++|++++++++|...+..++|+ |++..|++++.|++|+|||+++++++.++.+|...|
T Consensus 176 g~~lasg~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 176 GKYLASGA---IDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251 (321)
T ss_dssp SSEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCEEEEEc---CCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence 88888874 45899999999999999999999999999998 788899999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
.+++|+|+|++|+|++ |++|+|||+. +++++++.+|... |++++|+|||++|||++.| ++|+
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~s~~~d-----------~~i~ 315 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGNGSKIVSVGDD-----------QEIH 315 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTTSSEEEEEETT-----------CCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 9999999999999999 9999999997 9999999999887 8999999999999999875 9999
Q ss_pred EEeC
Q 016446 310 VSSI 313 (389)
Q Consensus 310 lWd~ 313 (389)
|||+
T Consensus 316 vwd~ 319 (321)
T 3ow8_A 316 IYDC 319 (321)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=359.25 Aligned_cols=290 Identities=14% Similarity=0.165 Sum_probs=250.7
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.+...++.+|. +.|.+++|+|+|+.|+++ +.| ..+++|++.+|++. . .+ ..+...+.+++|+ ||
T Consensus 13 ~~~~~~~~gh~-~~v~~~~~s~~~~~l~s~----~~d------g~i~iw~~~~~~~~--~-~~-~~h~~~v~~~~~~-~~ 76 (312)
T 4ery_A 13 YALKFTLAGHT-KAVSSVKFSPNGEWLASS----SAD------KLIKIWGAYDGKFE--K-TI-SGHKLGISDVAWS-SD 76 (312)
T ss_dssp CEEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------SCEEEEETTTCCEE--E-EE-CCCSSCEEEEEEC-TT
T ss_pred ceeEEEEcccC-CcEEEEEECCCCCEEEEe----eCC------CeEEEEeCCCcccc--h-hh-ccCCCceEEEEEc-CC
Confidence 45667788875 899999999999999994 577 78999999888751 1 22 2344557789998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCcee
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 189 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~ 189 (389)
|++|++++.|++|++||+.+++++.++. ...|.+++|+ ++.+|++++ .|++|++||++++++++++..|...+.
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCEEEEEecCCCCcEE
Confidence 9999999999999999999999988886 4689999999 588888764 458999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.++|+ |++..+++++.|++|++||+++++++..+ ..|...+..++|+|+|++|++++ |++|++||+. ++++..+.+
T Consensus 154 ~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 154 AVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp EEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 99998 77889999999999999999999998775 45677899999999999999998 9999999997 999999999
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
|..... .+......|+|++|++|+. |++|++||+.++++++++++|.
T Consensus 233 ~~~~~~--~~~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h~-------------------- 279 (312)
T 4ery_A 233 HKNEKY--CIFANFSVTGGKWIVSGSE-----------DNLVYIWNLQTKEIVQKLQGHT-------------------- 279 (312)
T ss_dssp SCCSSS--CCCEEEECSSSCEEEECCT-----------TSCEEEEETTTCCEEEEECCCS--------------------
T ss_pred cCCceE--EEEEEEEeCCCcEEEEECC-----------CCEEEEEECCCchhhhhhhccC--------------------
Confidence 986531 1334445578999999876 5999999999999999999998
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEec--CCCcEEEccC
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 389 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs--~D~tIrlW~~ 389 (389)
..|.+++|+|+++.||+++ .|++||+|+.
T Consensus 280 --------------~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 280 --------------DVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp --------------SCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred --------------CcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 5899999999999999997 7999999973
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=354.35 Aligned_cols=303 Identities=12% Similarity=0.123 Sum_probs=246.6
Q ss_pred ecccceeeeeeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeE
Q 016446 29 SRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFV 106 (389)
Q Consensus 29 ~~~tg~~l~tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v 106 (389)
..++.++..||.||. +.|++|+|+|+ ++.||| ++.| ++|+||++..++......+.. ..+...+.++
T Consensus 24 ~~~~~~l~~tL~GH~-~~V~~v~~sp~~~~~l~S----~s~D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 24 MTEQMTLRGTLKGHN-GWVTQIATTPQFPDMILS----ASRD------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92 (340)
T ss_dssp --CEEEEEEEECCCS-SCEEEEEECTTCTTEEEE----EETT------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEE
T ss_pred cCCceEEEEEECCcc-CCEEEEEEeCCCCCEEEE----EcCC------CeEEEEECCCCCcccceeeEEEeCCCCCEEEE
Confidence 344566777999975 99999999998 689999 4577 899999998877643333322 2355667889
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEE-EEe
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLK-VFY 182 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~-tl~ 182 (389)
+|+ |||++|++++.|++|++|+...+....... ...+..+.++ ++.+|++++ .|+.+++||+....... .+.
T Consensus 93 ~~s-~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 93 VIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS---RDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTSCEEEEECSS
T ss_pred EEC-CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec---CCCeEEEEEeCCCceEEEEec
Confidence 998 899999999999999999999888766554 5678899999 588888764 45899999987755443 345
Q ss_pred ecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc
Q 016446 183 HLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 259 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~ 259 (389)
+|...+..++|++... ..+++++.|++|++||+++++++..+.+|...|.+++|+|+|++|++++ |++|+|||++ ++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 7888899999974333 4566788999999999999999999999999999999999999999999 9999999997 89
Q ss_pred EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCC
Q 016446 260 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 339 (389)
Q Consensus 260 ~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~ 339 (389)
++..+.+|.. |..++|+|++.+++++. |++|+|||+++++++.+++.+..
T Consensus 249 ~~~~~~~~~~------v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~------------ 298 (340)
T 4aow_A 249 HLYTLDGGDI------INALCFSPNRYWLCAAT------------GPSIKIWDLEGKIIVDELKQEVI------------ 298 (340)
T ss_dssp EEEEEECSSC------EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCC--------------
T ss_pred eeeeecCCce------EEeeecCCCCceeeccC------------CCEEEEEECCCCeEEEeccccce------------
Confidence 9999987643 79999999998877653 48999999999999999876541
Q ss_pred CCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 340 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.....+|...|++|+|||||++||||+.||+|||||.
T Consensus 299 -------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 299 -------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred -------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 1112233469999999999999999999999999983
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=425.33 Aligned_cols=351 Identities=12% Similarity=0.096 Sum_probs=276.8
Q ss_pred cccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 3 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 3 ~~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
...|..|.|+ +++||+++.|++|++||+.++++++++. ++ +.|.+++|+|+|++|++ ++.| ..+++|
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~-~~V~~v~~sp~g~~l~s----gs~d------g~V~lw 125 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VP-GKITSIDTDASLDWMLI----GLQN------GSMIVY 125 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CS-SCEEEEECCTTCSEEEE----EETT------SCEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CC-CCEEEEEECCCCCEEEE----EcCC------CcEEEE
Confidence 4579999999 8899999999999999999999999997 33 78999999999999999 4567 789999
Q ss_pred EeccCCCCCccee-------Ee-eecccCceeEEEecCC-CeEEEEecCCCeEEEEeCCCCeEEEEecC-----------
Q 016446 82 YIRRGKPDSGFAL-------FE-SESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISD----------- 141 (389)
Q Consensus 82 ~i~~g~~~~~~~l-------~~-~~~~~~~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~g~~l~tl~~----------- 141 (389)
|+..+++. ...+ .. ..+.+.+.+|+|+ |+ +.+|++|+.|++| |||+.+++++.++..
T Consensus 126 d~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~s-p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 126 DIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWN-PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp ETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEE-TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred ECCCCccc-cceeccccccccccccCCCCeEEEEEc-cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 99887641 0000 00 2345668889999 64 6799999999999 999999999888752
Q ss_pred ---------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE--Ee---ec-------------CCceeEEEE
Q 016446 142 ---------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV--FY---HL-------------LHRNKKVDF 193 (389)
Q Consensus 142 ---------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t--l~---~~-------------~~~~~~v~f 193 (389)
..|.+|+|| +|.+||+++ .|++|+|||+.+|+++.. +. .| ...+..|+|
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~lasgs---~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHIITIH---EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEEEEEE---TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred ccccccccCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 469999999 588898874 458999999999999875 31 12 335777887
Q ss_pred Ee---cCCC-----------------------------------------------------------------------
Q 016446 194 IE---QFNE----------------------------------------------------------------------- 199 (389)
Q Consensus 194 ~~---~~~~----------------------------------------------------------------------- 199 (389)
++ |++.
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~ 359 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA 359 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence 53 1111
Q ss_pred ------eEEEEeCCCcEEEEECCCCeEEE-----------------------------------------EcccCCCceE
Q 016446 200 ------KLLVKQENENLQILDVRNAELME-----------------------------------------VSRTEFMTPS 232 (389)
Q Consensus 200 ------~l~~~s~D~tIklWd~~tg~~~~-----------------------------------------~l~gh~~~v~ 232 (389)
.+++.+.|++|++||+.+|.... .+.||...+.
T Consensus 360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 23333446778888887764322 1456666677
Q ss_pred EEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE--EE----ec-----cCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 233 AFIFLYENQLFLTFR-NRTVAVWNFR-GELV--TS----FE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 233 sv~fspdg~~laS~s-D~tIklWd~~-G~~l--~t----l~-----gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
+|+|+|||++|||++ |+|||+||++ |++. .. +. +|... |++|+|||||++||+|+.|
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~-----V~svafspdg~~LAsgs~D----- 509 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA-----VDKISFAAETLELAVSIET----- 509 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC-----EEEEEEETTTTEEEEEETT-----
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCc-----eeEEEecCCCCeEEEEecC-----
Confidence 777899999999999 9999999997 6431 11 22 77766 8999999999999999875
Q ss_pred ccCCCCCeEEEEeCCCC---------------------------------------------eEEEEecCCCCCCCcccc
Q 016446 300 WMEGSAGSINVSSILTG---------------------------------------------KCLAKINATNCSPKVDDE 334 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg---------------------------------------------~~l~tl~gH~~~~~~~~~ 334 (389)
|+|||||+.++ +|+.+|++|++.+....+
T Consensus 510 ------gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 510 ------GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp ------SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred ------cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence 99999999877 478999999988777777
Q ss_pred cCCCCCCCccccccccceecccc--------------cccCCEEEEEEC-----CCC---CEEEEecCCCcEEEcc
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVG--------------EALEDITSLFYD-----EER---NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~V~svafS-----pdg---~~LaSgs~D~tIrlW~ 388 (389)
+++| ..++...+++.++|+... +|..+|++|+|| ||| ++|+||+.|++||+||
T Consensus 584 SpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 584 SNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp CBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred cCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 7777 888888888777776432 677889999999 886 8999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=421.02 Aligned_cols=362 Identities=14% Similarity=0.181 Sum_probs=307.2
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ +++||+++.||+|++|+..+|+++.++.+|. ..|.+++|+|||+.||++ +.| ..+++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~----~~d------~~v~v 683 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-DEVLCCAFSSDDSYIATC----SAD------KKVKI 683 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------SEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC-CCEEEEEEecCCCEEEEE----eCC------CeEEE
Confidence 3678999999 9999999999999999999999999999875 899999999999999994 467 78999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecC--CCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIML 155 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p--dG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~l 155 (389)
||+.+|++. . .+ ..+...+..++|+ | ++.+|++|+.|++|++||+.+++++.++. ...|.+++|+ +|.+|
T Consensus 684 wd~~~~~~~--~-~~-~~~~~~v~~~~~~-~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 684 WDSATGKLV--H-TY-DEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EETTTCCEE--E-EE-ECCSSCEEEEEEC-SSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred EECCCCceE--E-EE-cCCCCcEEEEEEe-cCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence 999999862 1 12 2455667889998 6 56799999999999999999999998886 4689999999 58888
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEe-----------------------------------------------------
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFY----------------------------------------------------- 182 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~----------------------------------------------------- 182 (389)
++++ .|++|++||+.+++++.++.
T Consensus 759 ~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 759 ASCS---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp EEEE---SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEEE---CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 8874 45899999999888776653
Q ss_pred --ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC--
Q 016446 183 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 257 (389)
Q Consensus 183 --~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-- 257 (389)
+|...+..++|+ |++..+++++.|++|++||+.+++++..+.+|...|.+++|+|+|++|++++ |++|++||+.
T Consensus 836 ~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp ECSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 566778899998 7788999999999999999999999999999999999999999999999998 9999999731
Q ss_pred ------------------------------------------------------------------------------Cc
Q 016446 258 ------------------------------------------------------------------------------GE 259 (389)
Q Consensus 258 ------------------------------------------------------------------------------G~ 259 (389)
++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 44
Q ss_pred EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC----------------------------c-ccccCCCCCeEEE
Q 016446 260 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP----------------------------E-DQWMEGSAGSINV 310 (389)
Q Consensus 260 ~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~----------------------------~-~~~~~s~D~tIkl 310 (389)
++.++.+|... |.+++|+|||++|++++.|.. + ..++++.|++|++
T Consensus 995 ~~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 995 VFSSGVGHKKA-----VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CEEECCCCSSC-----CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEE
T ss_pred eeeecccCCCc-----eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEE
Confidence 55667778776 789999999999999998743 0 1156788999999
Q ss_pred EeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceec--------ccccccCCEEEEEECCCCCEEEEecCCC
Q 016446 311 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS--------TVGEALEDITSLFYDEERNEIYTGNRHG 382 (389)
Q Consensus 311 Wd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~V~svafSpdg~~LaSgs~D~ 382 (389)
||+.+|+++.++.+|...+....+++.+...++...+++.++|+ ++.+|...|++++|||||++||+|+.||
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999999998777667777776555555555555544 5566778999999999999999999999
Q ss_pred cEEEccC
Q 016446 383 LVHVWSN 389 (389)
Q Consensus 383 tIrlW~~ 389 (389)
+|++||.
T Consensus 1150 ~i~vwd~ 1156 (1249)
T 3sfz_A 1150 EIRIWNV 1156 (1249)
T ss_dssp CCCEEES
T ss_pred EEEEEEC
Confidence 9999983
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=367.31 Aligned_cols=297 Identities=12% Similarity=0.120 Sum_probs=237.3
Q ss_pred ceeeeeeecCCcceEEEEEE-----ee-CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCC--cceeEe-eecccCc
Q 016446 33 NRRICFLNVSPDEVIRSLFY-----NK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS--GFALFE-SESLKWP 103 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~-----sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~--~~~l~~-~~~~~~~ 103 (389)
.++..+|.+|. +.|++|+| +| ||+.||+ ++.| .+++||++..++... ...+.. ..|...+
T Consensus 11 ~~~~~~l~gH~-~~V~~~~~~~s~~~~~d~~~l~s----gs~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILEGHS-DWVTSIVAGFSQKENEDSPVLIS----GSRD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEEEECCS-SCEEEEEECCCSSTTCCCCEEEE----EETT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE
T ss_pred eeeeeeeccch-hhhhheeeEEEeecCCCCCEEEE----EcCC------CEEEEEECCcCCcccccccccchhccCCCce
Confidence 56778899875 89999999 77 9999999 5577 889999997655321 111211 2355567
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.+++|+ |+|++|++|+.|++|||||+.+++++.++. ...|.+|+|+ +|.+||+++ .|++|+|||+. +++...
T Consensus 80 ~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~---~d~~i~~wd~~-~~~~~~ 154 (343)
T 2xzm_R 80 SDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNIL-GECKFS 154 (343)
T ss_dssp EEEEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE---TTSCEEEEESS-SCEEEE
T ss_pred EEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc---CCCEEEEEecc-CCceee
Confidence 889998 899999999999999999999999988875 5689999999 588888774 46899999997 566655
Q ss_pred Ee---ecCCceeEEEEEecCC----------CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 181 FY---HLLHRNKKVDFIEQFN----------EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 181 l~---~~~~~~~~v~f~~~~~----------~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
+. .|...+..++|+ |++ ..+++++.|++|+||| .+++++.++.+|...|.+++|+|||++||+++
T Consensus 155 ~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp CCTTTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eecccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 54 678889999998 444 5788899999999999 46788889999999999999999999999999
Q ss_pred -CCeEEEEeC-C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE--Ee
Q 016446 248 -NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA--KI 322 (389)
Q Consensus 248 -D~tIklWd~-~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~--tl 322 (389)
|++|+|||+ . +.+...+. |... |.+++|+||+++|++++ |++|||||+.+++++. ++
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~-~~~~-----v~~v~~sp~~~~la~~~------------d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFD-AGST-----INQIAFNPKLQWVAVGT------------DQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEE-CSSC-----EEEEEECSSSCEEEEEE------------SSCEEEEESSSCCSCSEEEC
T ss_pred CCCeEEEEECCCCcccceeec-CCCc-----EEEEEECCCCCEEEEEC------------CCCEEEEEeCCCCCCceEEe
Confidence 999999999 4 55555553 3333 89999999999998764 4789999999887654 55
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+.. .......++...|++|+|+|||+.||+|+.||+||+|+
T Consensus 295 ~~~~~-----------------------~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 295 EAEPI-----------------------TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCCSG-----------------------GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred ecCcc-----------------------hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 53220 00000112336899999999999999999999999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-47 Score=360.61 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=239.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..|.|+ +++||+++.||+|+|||.+++++++++.+|. ..|++++|+|+|+.|++ ++.| ..+++
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s----~s~d------~~i~v 81 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIV----GSDD------FRIRV 81 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEE----EETT------SEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC-CcEEEEEEeCCCCEEEE----ECCC------CEEEE
Confidence 3579999999 9999999999999999999999999999875 89999999999999999 4577 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEEEcC--CceE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKISP--GIML 155 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~vafS~--g~~l 155 (389)
||+.+|+.. ..+ ..+...+.+++|+ |++++|++|+.|++|||||+.++. +..++. ...|.+++|+| +.+|
T Consensus 82 wd~~~~~~~--~~~--~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 82 FNYNTGEKV--VDF--EAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EETTTCCEE--EEE--ECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred EECCCCcEE--EEE--eCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 999998861 112 2455667889998 899999999999999999998874 556664 56899999996 5678
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 233 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s 233 (389)
|+++ .|++||+||+.++++..++. +|...+..+.|.+. ++.++++++.|++|||||+++++++.++.+|...|.+
T Consensus 157 ~sgs---~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 157 ASGC---LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233 (304)
T ss_dssp EEEE---TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEe---CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence 8764 55899999999988887776 55577889999742 4568888999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC--EEEEEecCCCcccccCCCCCeEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~--~laS~s~D~~~~~~~~s~D~tIk 309 (389)
++|+|++++|+|++ |++|||||++ ++++++|..|... +++++|+|+|+ +||+|+. +.+.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~asg~~------------~g~~ 296 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNYIASGFD------------NGFT 296 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSS-----EEEEEECTTCGGGCEEEEET------------TEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCcc-----EEEEEECCCCCceEEEEecC------------CceE
Confidence 99999999999999 9999999997 9999999999876 79999999986 6898875 4678
Q ss_pred EEeCCC
Q 016446 310 VSSILT 315 (389)
Q Consensus 310 lWd~~t 315 (389)
+|++.+
T Consensus 297 ~~~~~~ 302 (304)
T 2ynn_A 297 VLSLGN 302 (304)
T ss_dssp EEECC-
T ss_pred EEEecc
Confidence 999764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=363.78 Aligned_cols=276 Identities=9% Similarity=0.143 Sum_probs=241.0
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ +++||+++.||+|++||..+++++.++..+. ..|.+++|+|+|+.|++ ++.| ..+++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s----~~~d------~~v~i 123 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVAC----GGLD------NICSI 123 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS-SCEEEEEECTTSSEEEE----EETT------CEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC-ccEEEEEECCCCCEEEE----EeCC------CeEEE
Confidence 3579999999 8899999999999999999999999999875 89999999999999999 4577 88999
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEE
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLL 156 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la 156 (389)
|++..++.... .... ..+.+.+..++|+ |+++ |++++.|++|++||+.+++++.++. ...|.+++|+| +.+|+
T Consensus 124 w~~~~~~~~~~-~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 124 YNLKTREGNVR-VSRELAGHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EETTTCSBSCE-EEEEEECCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECccCCCcce-eEEEecCCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 99877653111 1111 2355567789998 7776 8889999999999999999998886 46899999994 77887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAF 234 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv 234 (389)
+++ .|++|++||+.+|++++++.+|...+..++|+ |++..+++++.|++|+|||+++++++..+.. +...|.++
T Consensus 201 sg~---~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 201 SGA---CDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEe---CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 764 45899999999999999999999999999998 7889999999999999999999998887653 33579999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
+|+|+|++|++++ |++|++||+. ++++.+|.+|..+ |.+++|+|||++|||||.| ++|||||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~s~D-----------~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSWD-----------SFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-----EEEEEEcCCCCEEEEEcCC-----------ccEEecC
Confidence 9999999999998 9999999996 9999999999987 8999999999999999875 9999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=382.69 Aligned_cols=350 Identities=14% Similarity=0.100 Sum_probs=265.0
Q ss_pred cEEEEEee--cc-EEEEE----------ecCceEEEEecccce---eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC
Q 016446 5 KVIEIVAA--RD-IVFAL----------AHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD 68 (389)
Q Consensus 5 ~v~~i~~~--~~-~~a~~----------~~~gtiklW~~~tg~---~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~ 68 (389)
+|..+.|+ ++ +||++ +.|++|++|++.+++ ++..+. |...|.+++|+|+|+.|+++ +.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~----~~ 87 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ--VDSKFNDLDWSHNNKIIAGA----LD 87 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC--CSSCEEEEEECSSSSCEEEE----ES
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe--cCCceEEEEECCCCCeEEEE----cc
Confidence 45667777 55 99999 899999999998876 555553 35899999999999999994 46
Q ss_pred CCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCC-CeEEEEecCCCeEEEEeCCCCe------EEEEe-
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT------MLYSI- 139 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~g~------~l~tl- 139 (389)
| ..+++|++...... ...+.. ..+...+.+++|+ |+ +++|++++.|++|++||+.+++ ....+
T Consensus 88 d------g~v~vw~~~~~~~~-~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 88 N------GSLELYSTNEANNA-INSMARFSNHSSSVKTVKFN-AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp S------SCEEEECCSSTTSC-CCEEEECCCSSSCCCEEEEC-SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred C------CeEEEeeccccccc-ccchhhccCCccceEEEEEc-CCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 7 78999998762210 011222 2455667889998 77 8999999999999999999887 44333
Q ss_pred ----cCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEEeec------CCceeEEEEEecCC-CeEEEEeC
Q 016446 140 ----SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFN-EKLLVKQE 206 (389)
Q Consensus 140 ----~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~------~~~~~~v~f~~~~~-~~l~~~s~ 206 (389)
+...|.+++|+| +.+|+++ +.|++|++||+++++++.++..| ...+..++|+ |++ ..+++++.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASA---GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH-PKNSTRVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEE---SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC-SSCTTEEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEE---cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC-CCCCCEEEEEEC
Confidence 356899999994 5677766 45689999999999999999976 6789999998 555 57778889
Q ss_pred CC---cEEEEECCCC-eEEEEcc-cCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeE
Q 016446 207 NE---NLQILDVRNA-ELMEVSR-TEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 278 (389)
Q Consensus 207 D~---tIklWd~~tg-~~~~~l~-gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~s 278 (389)
|+ +|++||++++ ++++.+. +|...|.+++|+| ++++|++++ |++|++||++ ++++.++.+|..+ |.+
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~ 310 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFK 310 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCC
T ss_pred CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEE
Confidence 98 9999999997 7788888 9999999999999 999999999 9999999997 9999999999887 799
Q ss_pred EEECCCC-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC--CCCCcccccCCCCCCCccccccccceecc
Q 016446 279 IYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN--CSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 279 v~fSpdG-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
++|+||| ++||+++. |++|+|||+.+++......... .......+++.++..+...-.....+ ..
T Consensus 311 ~~~s~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 378 (416)
T 2pm9_A 311 TKFAPEAPDLFACASF-----------DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QA 378 (416)
T ss_dssp EEECTTCTTEEEECCS-----------SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CC
T ss_pred EEECCCCCCEEEEEec-----------CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cC
Confidence 9999999 89999876 4999999999887654432200 00000011111110000000000111 22
Q ss_pred cccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 356 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+...|.+++|||||++||+|+.|++|+||+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 2234468889999999999999999999999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=347.90 Aligned_cols=318 Identities=11% Similarity=0.048 Sum_probs=265.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ |+.+|++..++.+..|............+| .+.|.+++|+|+|+.|++ ++ | ..+++
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~----~~-d------g~i~i 76 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNH-GEVVCAVTISNPTRHVYT----GG-K------GCVKV 76 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECC-SSCCCEEEECSSSSEEEE----EC-B------SEEEE
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccC-CCceEEEEEecCCcEEEE----cC-C------CeEEE
Confidence 3567888888 899988888887777765544444344454 589999999999999988 44 6 78999
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-CCce
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-PGIM 154 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~g~~ 154 (389)
|++..++.......+. ..+...+.+++|+ |||++|++++.|++|++||+.+++ +...+. ...|.+++|+ ++.+
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 9998776532222222 2345567789998 899999999999999999999887 445554 4689999999 5778
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
|++++ .|++|++||+++++++.++..|...+..++|+ |++..+++++.|++|++||+++++++..+. |...+.++
T Consensus 156 l~~~~---~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~ 230 (337)
T 1gxr_A 156 CFSCC---SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL 230 (337)
T ss_dssp EEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEEe---CCCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEE
Confidence 88764 45799999999999999999999999999998 678899999999999999999999988864 77889999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|+|+|++|++++ |++|++||++......+.+|... |.+++|+|||++|++++.| ++|++||+
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d-----------g~i~~~~~ 294 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC-----VLSLKFAYCGKWFVSTGKD-----------NLLNAWRT 294 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC-----EEEEEECTTSSEEEEEETT-----------SEEEEEET
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc-----eeEEEECCCCCEEEEecCC-----------CcEEEEEC
Confidence 9999999999998 99999999984334578888876 8999999999999999865 99999999
Q ss_pred CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 314 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 314 ~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+++++..+ .|. ..|.+++|+|||+.|++|+.||+|++|+.
T Consensus 295 ~~~~~~~~~-~~~----------------------------------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQS-KES----------------------------------SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEE-ECS----------------------------------SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEe-cCC----------------------------------CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999998654 455 48999999999999999999999999983
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=407.39 Aligned_cols=311 Identities=14% Similarity=0.040 Sum_probs=229.5
Q ss_pred cEEEEEecCceEEEEecccceee----eeeecCCcceEEEEEEeeC------CCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 14 DIVFALAHSGVCAAFSRETNRRI----CFLNVSPDEVIRSLFYNKN------NDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l----~tl~~~~~~~v~sv~~spd------g~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
+++|+++.|++||||+++++++. .++.++ ...|++|+|+|+ ++.||++ +.| .+++||++
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~-~~~V~~v~wsp~~~~~~~~~~LAs~----s~D------gtvrlWd~ 242 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS-FGEVWDLKWHEGCHAPHLVGCLSFV----SQE------GTINFLEI 242 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEEC-CCSEEEEEECSSCCCSSSSCEEEEE----ETT------SCEEEEEC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEec-CCcEEEEEECCCCCCCCCCceEEEE----ecC------CeEEEEEc
Confidence 35677889999999999888753 345665 478999999997 5799994 467 78999999
Q ss_pred ccCCCCC------cceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEe--cCCcEEEE--EEcC
Q 016446 84 RRGKPDS------GFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKHVQEI--KISP 151 (389)
Q Consensus 84 ~~g~~~~------~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl--~~~~V~~v--afS~ 151 (389)
..++... ..+.+. ..+...+.+|+|+ |++ +||+|+.|++|+|||+.+++ ++.++ |...|.+| +|+|
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEec-CCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 8775421 011122 2344567889998 554 79999999999999998775 33444 56789999 5675
Q ss_pred -C-ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC--ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 152 -G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 152 -g-~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~--~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
| .+||++ +.|++|||||++++++++++.+|.. .+.+|+|+ |++..+++++.|++|||||++++.++.++.+|
T Consensus 321 ~g~~~laS~---S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 321 FEDTVVSTV---AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp TSCCEEEEE---ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred CCCeEEEEe---ccCCeEEEEECCCCCcccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 5 688876 4568999999999999999988764 47899998 77888999999999999999999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
...|++|+|||+|++||||+ |++|+|||+.++++.+++++..++....|++++|||||+.+.. . +
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~------------~ 462 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--D------------S 462 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--C------------C
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--c------------C
Confidence 99999999999999999999 9999999998666554433222211112689999999996643 1 2
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC---EEEEecCCC
Q 016446 307 SINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN---EIYTGNRHG 382 (389)
Q Consensus 307 tIklWd~~-tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~---~LaSgs~D~ 382 (389)
.+++|+.. +|+++.+|.+|+ .+|++|+||||++ +||+|+.||
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~----------------------------------~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHG----------------------------------INITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp CCCCCC-------------CC----------------------------------CSCCCEEECCSTTTTTEEEEECTTS
T ss_pred CceecccccCCcceeeecCCC----------------------------------ceEEEEECCCCCCccHHHHhhccCc
Confidence 44555543 699999999998 5899999999964 999999999
Q ss_pred cEEEccC
Q 016446 383 LVHVWSN 389 (389)
Q Consensus 383 tIrlW~~ 389 (389)
+||||+.
T Consensus 509 ~vrlw~l 515 (524)
T 2j04_B 509 LLTLEYL 515 (524)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 9999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=379.20 Aligned_cols=315 Identities=11% Similarity=0.133 Sum_probs=269.5
Q ss_pred ccEEEEEee--cc-EEEEEecCceEEEEecccceeeeeeecCCcc---eEEEEEEeeC-CCEEEEEEEeecCCCcceeee
Q 016446 4 TKVIEIVAA--RD-IVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKN-NDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 4 ~~v~~i~~~--~~-~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~---~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~ 76 (389)
..|..+.|+ ++ ++++++.|++|++|+..+++++.++.+|. . .|.+++|+|+ |+.|+++ +.| .
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~----~~d------g 229 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITV----GSD------R 229 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS-CTTCCEEEEEECSTTCCEEEEE----ETT------C
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC-CCCceEEEEEECCCCCCEEEEE----eCC------C
Confidence 568899999 44 89999999999999999999999999875 7 8999999999 9999994 567 7
Q ss_pred eeeEeEeccCCCCCcceeEee---ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC------CcEEEE
Q 016446 77 STKIEYIRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQEI 147 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~---~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~------~~V~~v 147 (389)
.+++|++.+|+.. ..+.. .+...+.+++|+ +|++|++++.|++|++||+.+++++.++.. ..+.++
T Consensus 230 ~i~vwd~~~~~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 230 KISCFDGKSGEFL---KYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp CEEEEETTTCCEE---EECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred eEEEEECCCCCEe---EEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 8999999988862 11211 455567789996 899999999999999999999999888752 478999
Q ss_pred EEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe--------------------------------
Q 016446 148 KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-------------------------------- 195 (389)
Q Consensus 148 afS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~-------------------------------- 195 (389)
.|+++.++++++. |++|++||+.+++++.++.+|...+..++| +
T Consensus 305 ~~~~~~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VATGNGRIISLSL---DGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEEETTEEEEEET---TSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeCCCCeEEEEEC---CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 9988888988754 579999999999999999887766655554 1
Q ss_pred cC-------------------------------------------------------------------------CCeEE
Q 016446 196 QF-------------------------------------------------------------------------NEKLL 202 (389)
Q Consensus 196 ~~-------------------------------------------------------------------------~~~l~ 202 (389)
++ +..++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 460 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA 460 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEE
Confidence 01 33444
Q ss_pred EEeC-CCcEEEEECCCCeEE-EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc-CcCCcCCCCee
Q 016446 203 VKQE-NENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTN 277 (389)
Q Consensus 203 ~~s~-D~tIklWd~~tg~~~-~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~ 277 (389)
+++. |++|++||+.++++. ..+.+|...|.+++|+|||++|++++ |++|++||+. ++++.++.+ |... |.
T Consensus 461 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~-----v~ 535 (615)
T 1pgu_A 461 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-----IN 535 (615)
T ss_dssp EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-----EE
T ss_pred EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-----ee
Confidence 5555 777888888777666 77889999999999999999999998 9999999996 999999998 8876 89
Q ss_pred EEEECC----------CCCEEEEEecCCCcccccCCCCCeEEEEeCCCC-eEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 278 NIYITS----------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 278 sv~fSp----------dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+++||| ||++||+++.| ++|+|||+.++ +++.++.+|.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~h~-------------------- 584 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLD-----------TNIFIYSVKRPMKIIKALNAHK-------------------- 584 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETT-----------SCEEEEESSCTTCCEEETTSST--------------------
T ss_pred EEEEcCccccccccccCCCEEEEEcCC-----------CcEEEEECCCCceechhhhcCc--------------------
Confidence 999999 99999999875 99999999998 8999999998
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|+|||+ |+|++.|++|++|+.
T Consensus 585 --------------~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 585 --------------DGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp --------------TCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred --------------cceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 5999999999999 999999999999983
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=362.15 Aligned_cols=278 Identities=12% Similarity=0.157 Sum_probs=242.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|.++.|+ +++||+++.||+|++||..++++..++..+. ..|.+++|+|+|+.|++ ++.| ..+++
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp~g~~las----g~~d------~~i~v 132 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAPSGCAIAC----GGLD------NKCSV 132 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCEEEECTTSSEEEE----ESTT------SEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC-CCEEEEEECCCCCEEEE----eeCC------CCEEE
Confidence 4579999999 8899999999999999999999999999875 89999999999999999 6678 78899
Q ss_pred eEeccCCCCCc-ceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC---Cc
Q 016446 81 EYIRRGKPDSG-FALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP---GI 153 (389)
Q Consensus 81 ~~i~~g~~~~~-~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~---g~ 153 (389)
|++..++.... ..... ..+...+..++|+ |+++.|++++.|++|||||+++++++.++. ...|.+++|+| |.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 98865432111 11111 2355667889998 899999999999999999999999998886 46899999984 57
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC--CCce
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTP 231 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh--~~~v 231 (389)
+|++++ .|++|++||+.+|++++++.+|...+..++|+ |++..+++++.|++|||||+++++++..+..+ ...+
T Consensus 212 ~l~sgs---~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 212 TFVSGG---CDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEEe---CCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 888774 45899999999999999999999999999998 78899999999999999999999988877654 3578
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
.+++|+|+|++|++++ |++|+|||+. |+++.+|.+|..+ |.+++|||||++|||||.| ++||
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-----v~~l~~spdg~~l~sgs~D-----------~~v~ 351 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-----VSTLRVSPDGTAFCSGSWD-----------HTLR 351 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EEEEEECTTSSCEEEEETT-----------SEEE
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-----EEEEEECCCCCEEEEEcCC-----------CCEE
Confidence 9999999999999998 9999999996 9999999999987 8999999999999999875 9999
Q ss_pred EEe
Q 016446 310 VSS 312 (389)
Q Consensus 310 lWd 312 (389)
||+
T Consensus 352 vW~ 354 (354)
T 2pbi_B 352 VWA 354 (354)
T ss_dssp EEC
T ss_pred ecC
Confidence 996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=369.11 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=224.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEeccc------------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCC
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRET------------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 69 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~t------------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d 69 (389)
..|..+.|+ |++||+++ |+++|+|+... +.+...+. + ...|.+|+|+||+. |++ ++.|
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~d~~-l~~----~s~d 102 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ-T-EAGVADLTWVGERG-ILV----ASDS 102 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEE-E-SSCEEEEEEETTTE-EEE----EETT
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeec-c-CCCEEEEEEeCCCe-EEE----EECC
Confidence 458899999 88888887 88999997421 12222222 2 35799999999964 666 4577
Q ss_pred CcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEE
Q 016446 70 FSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEI 147 (389)
Q Consensus 70 ~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~v 147 (389)
..|+|||+.+|+..........+|...+.+|+|+ |||++||+|+.|++|||||+++++++.++. ...|.++
T Consensus 103 ------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 103 ------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp ------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ------CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 8999999999987432222223566678899998 899999999999999999999999999986 4689999
Q ss_pred EEc-CCc-eEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE
Q 016446 148 KIS-PGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 223 (389)
Q Consensus 148 afS-~g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~ 223 (389)
+|+ ++. +|+++ +.|++|||||+++++++.++. .|...+..++|++.++..+++++.|++|+|||+++++++++
T Consensus 176 ~~~~~~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 176 AASPHKDSVFLSC---SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EECSSCTTEEEEE---ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EecCCCCCceeee---ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 999 454 56665 456899999999999999885 44456789999854456777889999999999999999999
Q ss_pred cccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCccc
Q 016446 224 SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQ 299 (389)
Q Consensus 224 l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~ 299 (389)
+.+|...|++++|+|+| ++|||++ |++|+|||++ ++++ .+.+|... |++|+|||||+ +|+|+|.|
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-----V~~v~~sp~~~~llas~s~D----- 321 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-----VRDATWSPLNHSLLTTVGWD----- 321 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-----EEEEEECSSSTTEEEEEETT-----
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-----EEEEEEeCCCCeEEEEEcCC-----
Confidence 99999999999999998 5799998 9999999997 7665 57899887 89999999997 56788764
Q ss_pred ccCCCCCeEEEEeCCCCeE
Q 016446 300 WMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg~~ 318 (389)
++|++|++.++..
T Consensus 322 ------~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 322 ------HQVVHHVVPTEPL 334 (344)
T ss_dssp ------SCEEEEECCC---
T ss_pred ------CeEEEEECCCCCC
Confidence 9999999987654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=413.02 Aligned_cols=346 Identities=10% Similarity=0.095 Sum_probs=268.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ +++||+++.||+|+||+..+++++..+. |...|++|+|+| |++||++ +.| .+++|
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~----s~D------~~v~l 83 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVI----NAK------DTVYV 83 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEE----ETT------CEEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEE----ECc------CeEEE
Confidence 3679999999 8999999999999999998888777654 347999999999 9999994 477 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEe------------cCCcEEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSI------------SDKHVQEI 147 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl------------~~~~V~~v 147 (389)
||+.+|++ +....+...+.+++|+ |+|++|++|+.|++|++||+.++++. +.+ |...|.+|
T Consensus 84 Wd~~~~~~-----~~~~~~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 84 LSLYSQKV-----LTTVFVPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EETTTCSE-----EEEEECSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred EECCCCcE-----EEEEcCCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 99998876 2222344567889998 99999999999999999999998864 222 23689999
Q ss_pred EEcCC--ceEEEEecCCCCeeEEEEEcCCCeEEEEEeec------------------CCceeEEEEEecCCCeEEEEeCC
Q 016446 148 KISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------------------LHRNKKVDFIEQFNEKLLVKQEN 207 (389)
Q Consensus 148 afS~g--~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~------------------~~~~~~v~f~~~~~~~l~~~s~D 207 (389)
+|+|. .+|+++ +.|++| |||++++++++++.+| ...+.+|+|+ |++.+|++++.|
T Consensus 158 ~~sp~~~~~l~~g---~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~D 232 (902)
T 2oaj_A 158 QWNPRDIGTVLIS---YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHED 232 (902)
T ss_dssp EEETTEEEEEEEE---CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETT
T ss_pred EEccCCCCEEEEE---eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECC
Confidence 99973 577765 456899 9999999999999866 4669999998 788999999999
Q ss_pred CcEEEEECCCCeEEEE--c---cc-------------CCCceEEEEEc----CCC-cEEEEEc-C-----CeEEEEe---
Q 016446 208 ENLQILDVRNAELMEV--S---RT-------------EFMTPSAFIFL----YEN-QLFLTFR-N-----RTVAVWN--- 255 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~--l---~g-------------h~~~v~sv~fs----pdg-~~laS~s-D-----~tIklWd--- 255 (389)
++|+|||+++|+++.. + .+ |...|++++|+ ||+ ++|++++ | +++++|+
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999999998764 3 12 34579999994 543 5666664 3 1444444
Q ss_pred --------------------------------------------------------------------CC-CcEEEE---
Q 016446 256 --------------------------------------------------------------------FR-GELVTS--- 263 (389)
Q Consensus 256 --------------------------------------------------------------------~~-G~~l~t--- 263 (389)
+. |.....
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 32 321110
Q ss_pred --------------------------------------eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 264 --------------------------------------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 264 --------------------------------------l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
|+||... |++|+|||||++||||+.|
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~-----v~sv~~spdg~~laSgs~D----------- 456 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRT-----KRQKLPAEYGTAFITGHSN----------- 456 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCC-----CCCCCCCSEEEEEEEEETT-----------
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCC-----CCcccccccCcEEEEecCC-----------
Confidence 2233322 4567889999999999875
Q ss_pred CeEEEEeCCCCeEE--EE----ec-----CCCCCCCcccccCCCCCCCccccccccceecc-------------------
Q 016446 306 GSINVSSILTGKCL--AK----IN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRST------------------- 355 (389)
Q Consensus 306 ~tIklWd~~tg~~l--~t----l~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 355 (389)
++|||||+.+|++. .. +. +|+..+....+++++...++...+++.++|..
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence 99999999988532 11 22 88877777788888876666666665555543
Q ss_pred ----------------------------------cccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 356 ----------------------------------VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 356 ----------------------------------~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.+|...|++|+||||| +||+|+.|++|||||.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 44578899999999999 9999999999999983
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=371.35 Aligned_cols=283 Identities=11% Similarity=0.146 Sum_probs=241.4
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..+.|+ +++||+++.||+|++||..+++++.++.+|. ..|.+++|+|+|+.||+ ++.| ..+++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~las----~~~d------~~v~i 134 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAFAPNGQSVAC----GGLD------SACSI 134 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC-TTCCCCEECTTSSEEEE----CCSS------SCCEE
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC-CCEEEEEECCCCCEEEE----eeCC------CcEEE
Confidence 3579999999 8899999999999999999999999999875 89999999999999999 6788 88899
Q ss_pred eEeccCCCCC----cceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-------cCCcEEEEEE
Q 016446 81 EYIRRGKPDS----GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-------SDKHVQEIKI 149 (389)
Q Consensus 81 ~~i~~g~~~~----~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-------~~~~V~~vaf 149 (389)
|++..+.... ....+ ..+.+.+.+++|+|.++..|++|+.|++||+||+.+++++..+ |...|.+++|
T Consensus 135 w~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 9986543210 01111 2355566789998444678999999999999999999998777 2358999999
Q ss_pred c--CCceEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 150 S--PGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 150 S--~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
+ ++.+|+++ +.|++|||||++ ++++++++.+|.+.+.+|+|+ |++..+++++.|++|||||++++++++++..
T Consensus 214 ~~~~~~~l~sg---s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 214 NSLNANMFISG---SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp CSSSCCEEEEE---ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ecCCCCEEEEE---ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 8 37788776 456899999998 678999999999999999998 7889999999999999999999999998876
Q ss_pred CCC-------ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe----ccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 227 EFM-------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 227 h~~-------~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl----~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
|.. .|.+++|+|+|++|++++ |++|++||.. ++++.++ .+|... |.+++|||||++|||||.
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-----CCEEEECSSSSEEEEECT
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-----eEEEEECCCCCEEEEeeC
Confidence 543 489999999999999998 9999999996 9998888 678776 799999999999999976
Q ss_pred CCCcccccCCCCCeEEEEeCCCCe
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
| ++||||++..++
T Consensus 365 D-----------~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 D-----------KNLKIWAFSGHR 377 (380)
T ss_dssp T-----------SCEEEEECCSSS
T ss_pred C-----------CCEEEEecCCCc
Confidence 5 999999987554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=368.89 Aligned_cols=285 Identities=10% Similarity=0.085 Sum_probs=219.8
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe---ee---cccCceeEEEecCCCeEEEE
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SE---SLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~---~~---~~~~~~~v~Fs~pdG~~Las 118 (389)
-+|++|+|+|||+.||+++.+.+. ++++ ..++||++..+.......+.. .. +...+.+++|+ +..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~--sGi~-N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGN--NGIP-NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSS--SSCC-EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccc--cCCC-CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence 479999999999999996532211 1111 578999987665421111111 11 22234456554 445544
Q ss_pred -----------ecCCCeEEEEeCCCCeE-E---EEec-------CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 119 -----------SAQDSIYKVFDLKNYTM-L---YSIS-------DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 119 -----------~s~D~tiklWdl~~g~~-l---~tl~-------~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
++.|+++|+|++.+++. + .... ...|+.|+|| ||++||+++ ++.|++|||||++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as-~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS-SKVPAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE-SCSSCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE-CCCCCEEEEeECCCC
Confidence 45789999999876542 2 2221 2469999999 588887654 567899999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE--EcccCCCceEEEEEcCCCcEEEEEc-CC---
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NR--- 249 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~fspdg~~laS~s-D~--- 249 (389)
+++.++. |.+.|.+|+|+ |++.++++++ |.++++|+..+++++. ++.+|...|.+|+|+|||+++++++ |+
T Consensus 168 ~~~~~~~-~~~~V~~v~fs-pdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFS-TDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEEEEE-CSSCCCEEEEC-TTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred cEEEEeC-CCCceEEEEEc-cCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 9999997 66889999998 7777777776 5567778777887653 4678999999999999999999998 87
Q ss_pred -eEEEEeCC-CcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-e
Q 016446 250 -TVAVWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-I 322 (389)
Q Consensus 250 -tIklWd~~-G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l 322 (389)
++++|++. ++. .+.+.+|..+ |.+++|||||++||+|+.| ++|||||+++|+++.+ +
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~~Spdg~~lasgs~D-----------~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKG-----ITSMDVDMKGELAVLASND-----------NSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSC-----EEEEEECTTSCEEEEEETT-----------SCEEEEETTTTEEEEEET
T ss_pred eEEeecccccceecceeeeeecCCCCC-----eEeEEECCCCCceEEEcCC-----------CEEEEEECCCCcEEEEec
Confidence 78999985 432 4678888876 8999999999999999875 9999999999999988 4
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
++|+ ..|++|+|||||++|||||.|+|||||+.
T Consensus 309 ~gH~----------------------------------~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 309 QAHS----------------------------------FAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp TSSS----------------------------------SCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred Cccc----------------------------------CCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 8998 59999999999999999999999999984
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=352.58 Aligned_cols=282 Identities=8% Similarity=0.109 Sum_probs=237.5
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEeccc-----ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 74 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~t-----g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~ 74 (389)
...|..|.|+ +++||+++.|++|++|++.+ +.+++++.+|. ..|.+++|+|||+.|++ ++.|
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~s----~s~D----- 86 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALS----ASWD----- 86 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-SCEEEEEECTTSSEEEE----EETT-----
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-ccEEEEEECCCCCEEEE----EeCC-----
Confidence 3578999997 37999999999999999853 56788999875 89999999999999999 4577
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCC
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG 152 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g 152 (389)
.+++|||+.+|++. ..+ ..+...+.+++|+ |+|++|++|+.|++|||||+ .++++.++. ...|.+++|+|.
T Consensus 87 -~~v~~wd~~~~~~~--~~~--~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~-~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 87 -KTLRLWDVATGETY--QRF--VGHKSDVMSVDID-KKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp -SEEEEEETTTTEEE--EEE--ECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECCC
T ss_pred -CEEEEEECCCCCee--EEE--ccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEC-CCCeEEEEeccCCcEEEEEEccC
Confidence 89999999998751 222 2455667889998 89999999999999999998 467777775 468999999963
Q ss_pred -------ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc
Q 016446 153 -------IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 153 -------~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~ 225 (389)
.+|+++ +.|++|++||+.++++..++.+|...+..++|+ |++.+|++++.|++|+|||+.+++++.++.
T Consensus 160 ~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 160 EKADDDSVTIISA---GNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp ------CCEEEEE---ETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCccEEEEE---eCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 267766 456899999999999999999999999999998 788999999999999999999999999988
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCc---CCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 226 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~---~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
.| ..|.+++|+|+|++|+++.+..|++|+++ +.++..+..+.... ....|.+++|||||++||+|+.|
T Consensus 236 ~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D------- 307 (319)
T 3frx_A 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD------- 307 (319)
T ss_dssp CC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT-------
T ss_pred CC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC-------
Confidence 66 58999999999999999988889999997 77777776432110 01127899999999999999875
Q ss_pred CCCCCeEEEEeCCCCe
Q 016446 302 EGSAGSINVSSILTGK 317 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~ 317 (389)
++|||||+.|++
T Consensus 308 ----g~i~vWd~~t~~ 319 (319)
T 3frx_A 308 ----NVIRVWQVMTAN 319 (319)
T ss_dssp ----SCEEEEEEEEC-
T ss_pred ----ceEEEEEEeecC
Confidence 999999987753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=375.57 Aligned_cols=332 Identities=14% Similarity=0.079 Sum_probs=252.3
Q ss_pred EEecccceeeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEecc---CCCCCcceeEeeecccC
Q 016446 27 AFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR---GKPDSGFALFESESLKW 102 (389)
Q Consensus 27 lW~~~tg~~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~---g~~~~~~~l~~~~~~~~ 102 (389)
.|+. +|+++.++..+|.+.|++|+|+| +|+.||+ ++.| ..++||++.. +..... .....+...
T Consensus 47 ~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s----~s~d------g~v~vwd~~~~~~~~~~~~--~~~~~h~~~ 113 (437)
T 3gre_A 47 MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLIT----GSDQ------GVIKIWNLKEIIVGEVYSS--SLTYDCSST 113 (437)
T ss_dssp GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEE----EETT------SEEEEEEHHHHHTTCCCSC--SEEEECSSC
T ss_pred cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEE----ecCC------ceEEEeECcccccCcccce--eeeccCCCC
Confidence 5987 59999999555569999999999 9999999 4577 8999999977 553211 222235667
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCC---CCeEEEEecCCcEEEEEEc-----------------CCceEEEEecCC
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKHVQEIKIS-----------------PGIMLLIFNRSS 162 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~---~g~~l~tl~~~~V~~vafS-----------------~g~~la~~~~~s 162 (389)
+.+++|+ |++++|++|+.|++|+|||+. +++++..+..+.|..++|+ ++.+|++++
T Consensus 114 v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 189 (437)
T 3gre_A 114 VTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--- 189 (437)
T ss_dssp EEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE---
T ss_pred EEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe---
Confidence 8899998 899999999999999999994 6777665554455555544 378888774
Q ss_pred CCeeEEEEEcCCCeEEEEEee--cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc-cCCCceEEEEE---
Q 016446 163 SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIF--- 236 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~--~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~-gh~~~v~sv~f--- 236 (389)
.|++|++||+++++++.++.+ |.+.+..++|+ |++..+++++.|++|+|||++++++++++. +|...|.+++|
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 458999999999999999998 88999999998 778899999999999999999999999886 88889999954
Q ss_pred -cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcC---------------------CCCeeEEEECCCCCEEEEEe
Q 016446 237 -LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP---------------------DCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 237 -spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~---------------------~~~v~sv~fSpdG~~laS~s 292 (389)
+|++++|++++ |++|+|||++ |++++++.+|...+. ...|++++|+ ++++|++|+
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 56899999999 9999999997 999999998753211 1127889999 889999987
Q ss_pred cCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc--CCCCCCCccccc-cccceecccccccCCEEEEEEC
Q 016446 293 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL--GSSSTGKSKKLN-KSSYIRSTVGEALEDITSLFYD 369 (389)
Q Consensus 293 ~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~svafS 369 (389)
.| ++|++||+.+++++.++.+|.......... .........+.+ ...........|.+.|++|+|+
T Consensus 348 ~d-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~ 416 (437)
T 3gre_A 348 AT-----------SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC 416 (437)
T ss_dssp GG-----------TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred CC-----------CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence 65 999999999999999999986321000000 000000000000 0011112334477899999999
Q ss_pred CC--CCEEEEecCCCcEEEcc
Q 016446 370 EE--RNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 370 pd--g~~LaSgs~D~tIrlW~ 388 (389)
|+ +.+|+||+.||+|+||+
T Consensus 417 ~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 417 EVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ESSSSEEEEEEETTSCEEEEC
T ss_pred ccCCceEEEEEcCCceEEEeC
Confidence 99 88999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=366.66 Aligned_cols=281 Identities=11% Similarity=0.109 Sum_probs=223.1
Q ss_pred ccEEEEEee--ccEEEEEec------CceEEEEecccceeee----eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCc
Q 016446 4 TKVIEIVAA--RDIVFALAH------SGVCAAFSRETNRRIC----FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 71 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~------~gtiklW~~~tg~~l~----tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~ 71 (389)
..|..|.|+ |++||+++. |+++++|+..+|.... ...+| ...|.+|+|+|+++.|+. +.|
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~-----s~d-- 114 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVA-----SDS-- 114 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEE-----ETT--
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEE-----ECC--
Confidence 468999999 999999997 7889999987776433 33444 478999999999975543 356
Q ss_pred ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEE
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI 149 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vaf 149 (389)
.+|+|||+.+|+.......-..++...+.+|+|+ |||++||+|+.|++|||||+++++++..+. ...|.+|+|
T Consensus 115 ----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 115 ----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp ----SCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----CEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 6899999998876433332223455667889998 899999999999999999999999998886 468999999
Q ss_pred cC-Cc-eEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc
Q 016446 150 SP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 150 S~-g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~ 225 (389)
+| +. +++++ +.|++|+|||+++++++..+. .|...+.+|+|+|..+..+++++.|++|+|||++++++++++.
T Consensus 190 s~~~~~~~~s~---~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 190 CPGKDTIFLSC---GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp CTTCSSCEEEE---ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred ccCCCceeeee---ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 94 44 66665 446899999999999988765 3455679999984334567778999999999999999999999
Q ss_pred cCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCccccc
Q 016446 226 TEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 226 gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~ 301 (389)
+|...|++++|+|++ ++|||++ |++|+|||++ |++++++ +|..+ |++|+||| ||++|||+|.|
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-----V~~vafsP~d~~~l~s~s~D------- 333 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-----VTGVAWSPLDHSKFTTVGWD------- 333 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-----EEEEEECSSSTTEEEEEETT-------
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-----EEEEEEeCCCCCEEEEEcCC-------
Confidence 999999999999987 6799998 9999999997 8888766 79876 89999999 89999999875
Q ss_pred CCCCCeEEEEeCCCCe
Q 016446 302 EGSAGSINVSSILTGK 317 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~ 317 (389)
++|++||+.+..
T Consensus 334 ----g~v~iW~~~~~~ 345 (357)
T 4g56_B 334 ----HKVLHHHLPSEG 345 (357)
T ss_dssp ----SCEEEEECC---
T ss_pred ----CeEEEEECCCCC
Confidence 999999997643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=350.60 Aligned_cols=281 Identities=12% Similarity=0.079 Sum_probs=220.5
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEecccc--eeeeee-ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETN--RRICFL-NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg--~~l~tl-~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
+..|..+.|+.++||+++.|++||||++.++ +++.++ .+.|...|++|+|+|+|+.||+ ++.| .+++
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las----~s~D------~~v~ 83 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA----GSFD------STVS 83 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEE----EETT------SCEE
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEE----EeCC------CcEE
Confidence 4579999999889999999999999999765 567777 3435689999999999999999 4577 7889
Q ss_pred EeEeccCCCC--CcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-C---CeEEEEec--CCcEEEEEEc
Q 016446 80 IEYIRRGKPD--SGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N---YTMLYSIS--DKHVQEIKIS 150 (389)
Q Consensus 80 l~~i~~g~~~--~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~---g~~l~tl~--~~~V~~vafS 150 (389)
||++..+... ....+.. ..+...+.+|+|+ |||++||+|+.|++|+|||+. . .+++.++. ...|.+|+|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9998543211 0111211 2355567889998 899999999999999999994 2 35677775 4689999999
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCCC--eEEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCC-------
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNA------- 218 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~tG--~~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg------- 218 (389)
++.+||+++ .|++|||||+.++ +++.++.+|.+.++.++|+ |+ +..+++++.|++|||||+.++
T Consensus 163 p~~~~l~s~s---~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 163 PSEALLASSS---YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp SSSSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred CCCCEEEEEc---CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 478888764 4589999999887 7999999999999999998 55 457888999999999999876
Q ss_pred -eEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEE-eccCcC-CcCCCCeeEEEECC--CCCEE
Q 016446 219 -ELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTS-FEDHLL-WHPDCNTNNIYITS--DQDLI 288 (389)
Q Consensus 219 -~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~t-l~gh~~-~~~~~~v~sv~fSp--dG~~l 288 (389)
++..++.+ |...|++++|+|++ +||+++ |++|+|||.. |+ ++.. +.+|.. . |++++|+| ||++|
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~-----v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE-----INVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC-----EEEEEEC-----CCE
T ss_pred eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccce-----EEEEEEecCCCceEE
Confidence 57777776 99999999999877 677887 9999999996 63 3433 467875 4 89999999 89999
Q ss_pred EEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 289 ISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 289 aS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
||||.| |+|||||+++
T Consensus 313 as~s~D-----------g~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDD-----------GIVNFWSLEK 328 (330)
T ss_dssp EEEETT-----------SEEEEEEC--
T ss_pred EEecCC-----------CcEEEEEecc
Confidence 999875 9999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=358.56 Aligned_cols=277 Identities=12% Similarity=0.132 Sum_probs=238.0
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCc-----------------ceEEEEEEeeCCCEEEEEE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-----------------EVIRSLFYNKNNDSLITVS 63 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~-----------------~~v~sv~~spdg~~l~s~s 63 (389)
.+.|.+|.|+ |++||+++ ++++++|+..+|+++..+..+.. ..|++|+|+|||+.|++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s-- 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-- 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE--
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE--
Confidence 3568899999 89999987 78999999999999999876531 24999999999999999
Q ss_pred EeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CC
Q 016446 64 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 142 (389)
Q Consensus 64 ~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~ 142 (389)
++.| ..++|||+.++++. ..+ ..+...+.+++|+ |+|++|++++.|++||+||+.++++..++. ..
T Consensus 141 --~~~d------~~i~iwd~~~~~~~---~~~-~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 141 --GAED------RLIRIWDIENRKIV---MIL-QGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp --EETT------SCEEEEETTTTEEE---EEE-CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --EcCC------CeEEEEECCCCcEE---EEE-ccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 4577 89999999888651 112 2455567889998 899999999999999999999999988876 57
Q ss_pred cEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEE-------eecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 143 HVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 143 ~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl-------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
.|.+++|+| |.+||+++ .|++|++||+++|+++..+ .+|...+.+++|+ |++..|++++.|++|+||
T Consensus 208 ~v~~~~~~~~~~~~l~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGS---LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp CEEEEEECSTTCCEEEEEE---TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEE
T ss_pred CcEEEEEECCCCCEEEEEc---CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEE
Confidence 899999995 67888764 4589999999999999888 5788899999998 788999999999999999
Q ss_pred ECCC------------CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 214 DVRN------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 214 d~~t------------g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
|+++ +.|..++.+|...|.+++|+|++++|+|++ |++|++||+. |+++.+|++|... |.++
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~-----v~~v 358 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VISV 358 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC-----EEEE
Confidence 9976 457778899999999999999999999999 9999999997 9999999999987 8999
Q ss_pred EECC------CCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 280 YITS------DQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 280 ~fSp------dG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+|+| ++++|||||.| ++|||||+..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~D-----------g~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGD-----------CKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETT-----------SEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCC-----------CcEEECcccc
Confidence 9986 79999999875 9999999753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=351.05 Aligned_cols=284 Identities=11% Similarity=0.062 Sum_probs=229.1
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeee--eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~--tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
.|..+.|+ +++||+++.|++||||+.++++.++ .+...|...|++|+|+|+|++||++ +.| ..++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----s~D------~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA----SFD------ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE----ECC------CcEEE
Confidence 78899998 9999999999999999998776543 3333455899999999999999994 577 78899
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEec--CCcEEEEEEc-CCc
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKIS-PGI 153 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~--~~~V~~vafS-~g~ 153 (389)
|++..++. ..+.. ..+...+.+|+|+ |+|++||+|+.|++|++||+.+++ ++..+. ...|.+++|+ ++.
T Consensus 88 w~~~~~~~---~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 88 WKKNQDDF---ECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEECCC-E---EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEccCCCe---EEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99877653 11222 2355567889998 899999999999999999998764 455664 4689999999 588
Q ss_pred eEEEEecCCCCeeEEEEEcCCCe--EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--------------
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------------- 217 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~--~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-------------- 217 (389)
+||+++ .|++|+|||+.+++ ++.++.+|...+.+++|+ |++.+|++++.|++|+|||...
T Consensus 164 ~l~s~s---~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 164 LLASAS---YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp CEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred EEEEEe---CCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 888774 45899999999885 668999999999999998 7889999999999999999632
Q ss_pred -CeEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc---------EEEEeccCcCCcCCCCeeEEEECCC
Q 016446 218 -AELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 218 -g~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~---------~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.+|+.++.+ |...|++++|+|++.+||+++ |++|++|+.+ +. ....+.+|... |++|+|+|+
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~ 314 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD-----VNCVAWNPK 314 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC-----EEEEEECSS
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc-----EeEeEEeCC
Confidence 356777776 999999999999999999998 9999999985 32 12345688876 899999999
Q ss_pred C-CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 285 Q-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 285 G-~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+ .+|||||.| |+||||++.+++.+..+
T Consensus 315 ~~~~laS~s~D-----------g~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 315 EPGLLASCSDD-----------GEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp STTEEEEEETT-----------SCEEEEEECC-------
T ss_pred CceEEEEcCCC-----------CcEEEEEecCCCCcccc
Confidence 8 599999875 99999999988866544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=353.84 Aligned_cols=303 Identities=13% Similarity=0.187 Sum_probs=263.2
Q ss_pred EEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 6 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 6 v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
+..+.+.+++||+++.||+|++||..+|++++++.+|. ..|++++|+ ++.|++ ++.| ..+++|++.+
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s----~~~d------g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-GGVWSSQMR--DNIIIS----GSTD------RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS-SCEEEEEEE--TTEEEE----EETT------SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC-CCEEEEEec--CCEEEE----EeCC------CeEEEEECCc
Confidence 46677779999999999999999999999999999875 899999998 578888 4577 8899999988
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCC
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSS 163 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~ 163 (389)
|+.. ..+ ..+...+.+++|+ ++.|++|+.|++|++||+.+++++.++. ...|.+++| ++.++++++ .
T Consensus 189 ~~~~--~~~--~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~---~ 257 (445)
T 2ovr_B 189 GECI--HTL--YGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGA---Y 257 (445)
T ss_dssp TEEE--EEE--CCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEE---T
T ss_pred CcEE--EEE--CCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEc---C
Confidence 8752 111 2344456678885 5689999999999999999999988875 468999999 778888774 4
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 243 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l 243 (389)
|++|++||+.+++++.++.+|...+..++| ++..+++++.|++|++||+++++++.++.+|...+.++.+ ++++|
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l 332 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNIL 332 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEE
Confidence 589999999999999999999999999998 5789999999999999999999999999999999988876 56789
Q ss_pred EEEc-CCeEEEEeCC-CcEEEEecc---CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 244 LTFR-NRTVAVWNFR-GELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 244 aS~s-D~tIklWd~~-G~~l~tl~g---h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++++ |++|++||++ ++++.++.+ |... |.+++|+ +++||+|+.| |+|+|||+.+|++
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~d-----------g~v~iwd~~~~~~ 394 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQFN--KNFVITSSDD-----------GTVKLWDLKTGEF 394 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSC-----EEEEEEC--SSEEEEEETT-----------SEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCC-----EEEEEEC--CCEEEEEeCC-----------CeEEEEECCCCce
Confidence 9998 9999999996 999999997 5554 7999994 6899999865 9999999999999
Q ss_pred EEEec-----CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc----EEEccC
Q 016446 319 LAKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 389 (389)
Q Consensus 319 l~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t----IrlW~~ 389 (389)
+.++. +|. ..|++++|+|+|..||+|+.||+ |.+||.
T Consensus 395 ~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 395 IRNLVTLESGGSG----------------------------------GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp EEEEEECTTGGGT----------------------------------CEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred eeeeeccccCCCC----------------------------------ceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 99983 444 58999999999999999999998 999984
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=338.68 Aligned_cols=297 Identities=14% Similarity=0.129 Sum_probs=247.4
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
....|.+|. +.|.+++|+|+|+.|+++ +.| ..+++|++.+++.. . .+ ..+...+.+++|+ |+|+
T Consensus 24 ~~~~l~~h~-~~v~~~~~s~~~~~l~~~----~~d------g~i~vwd~~~~~~~--~-~~-~~h~~~v~~~~~~-~~~~ 87 (369)
T 3zwl_B 24 KAIKLTGHE-RPLTQVKYNKEGDLLFSC----SKD------SSASVWYSLNGERL--G-TL-DGHTGTIWSIDVD-CFTK 87 (369)
T ss_dssp EEEEEECCS-SCEEEEEECTTSCEEEEE----ESS------SCEEEEETTTCCEE--E-EE-CCCSSCEEEEEEC-TTSS
T ss_pred ccEEEEEee-ceEEEEEEcCCCCEEEEE----eCC------CEEEEEeCCCchhh--h-hh-hhcCCcEEEEEEc-CCCC
Confidence 334588875 899999999999999994 466 78999999888761 1 11 2355567889998 8999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC--CCCeeEEEEEcCCCe-----------EEE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS--SSHVPLKILSIEDGT-----------VLK 179 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~--s~d~tiklWd~~tG~-----------~l~ 179 (389)
+|++++.|++|++||+.+++++..+. ...|.+++|+ ++.+|+++..+ ..+++|++||+.+++ .+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 99999999999999999999988876 6789999999 58888876433 223799999998764 445
Q ss_pred EEeecCC--ceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 180 VFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 180 tl~~~~~--~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
.+..|.+ .+..++|+ |++..+++++.|++|++||+++ ++++..+.+|...|.+++|+|++++|++++ |++|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 5566655 88999998 6788999999999999999999 899999999999999999999999999998 99999999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc-c--cCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-W--MEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~-~--~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
+. ++++..+. |... +..++|+|+|+++++++.+..... . .......|++||+.+++++..+.+|.
T Consensus 247 ~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----- 315 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCP-----LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF----- 315 (369)
T ss_dssp TTTCCEEEEEE-CSSC-----EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS-----
T ss_pred CCCCceeeeec-CCCC-----ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc-----
Confidence 97 99999988 4443 799999999999999986510000 0 00001189999999999999999998
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|.+++|+|||++||+|+.||+|++|+
T Consensus 316 -----------------------------~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 316 -----------------------------GPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp -----------------------------SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -----------------------------CcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 5899999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=412.21 Aligned_cols=313 Identities=12% Similarity=0.199 Sum_probs=272.9
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
..|..+.|+ +.++++++.||+|++|+..+++++..+.+|. ..|.+++|+|+|+.|++++ .| ..+++|
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s----~d------g~v~vw 909 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTAS----DD------QTIRVW 909 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEE----TT------SCEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEe----CC------CeEEEE
Confidence 457778888 9999999999999999999999999999875 8999999999999999954 55 445555
Q ss_pred Eec-----------------------------------------------------------------------------
Q 016446 82 YIR----------------------------------------------------------------------------- 84 (389)
Q Consensus 82 ~i~----------------------------------------------------------------------------- 84 (389)
++.
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 432
Q ss_pred --cCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-cCCcEEEEEEcCCceEEEEec
Q 016446 85 --RGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKHVQEIKISPGIMLLIFNR 160 (389)
Q Consensus 85 --~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-~~~~V~~vafS~g~~la~~~~ 160 (389)
.++. +.. ..+...+.+++|+ |||++|++++.|++|++||+.+++++... +...|.+++|+|+..+++++
T Consensus 990 ~~~~~~-----~~~~~~h~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~- 1062 (1249)
T 3sfz_A 990 LPNNRV-----FSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS- 1062 (1249)
T ss_dssp TTTTSC-----EEECCCCSSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE-
T ss_pred cCCCce-----eeecccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-
Confidence 2221 111 1244557779998 89999999999999999999999987544 35789999999877887764
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
.|++|++||+.+|++++++.+|.+.+..++|+ |++..+++++.|++|++||+.+++++.++.+|...|.+++|+|||
T Consensus 1063 --~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg 1139 (1249)
T 3sfz_A 1063 --FDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG 1139 (1249)
T ss_dssp --SSSEEEEEETTTTCCCEEEECCSSCCCCEEEC-SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSS
T ss_pred --CCCcEEEEECCCCceeEEEcccCCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCC
Confidence 45899999999999999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred cEEEEEc-CCeEEEEeCC-CcEEEEe---------ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 241 QLFLTFR-NRTVAVWNFR-GELVTSF---------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G~~l~tl---------~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
++||+++ ||+|++||+. |+++.++ .+|..+ |.+++|||||++||+++ |+|+
T Consensus 1140 ~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~fs~dg~~l~s~~-------------g~v~ 1201 (1249)
T 3sfz_A 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-----VTDVCFSPDSKTLVSAG-------------GYLK 1201 (1249)
T ss_dssp SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC-----CCEEEECTTSSCEEEES-------------SSEE
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCce-----EEEEEECCCCCEEEECC-------------CeEE
Confidence 9999999 9999999997 9888776 677776 79999999999999973 7999
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+||+.+|+++.++.+|. ..|++++|||||++|++++.||+|++|+.
T Consensus 1202 vwd~~~g~~~~~~~~~~----------------------------------~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1202 WWNVATGDSSQTFYTNG----------------------------------TNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EBCSSSCBCCCCCCCSS----------------------------------CCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEECCCCceeeeeeccC----------------------------------CcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 99999999999999987 58999999999999999999999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=357.69 Aligned_cols=311 Identities=13% Similarity=0.106 Sum_probs=254.6
Q ss_pred EEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 8 EIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 8 ~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
.|.|+ +++||+++.||++++|+..++++...+..+ ..+...+|+|+|+.||++ +.| ..+++|++..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~----~~d------g~i~iwd~~~ 128 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILG----TTE------GDIKVLDSNF 128 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEE----ETT------SCEEEECTTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEE----ECC------CCEEEEeCCC
Confidence 46677 899999999999999999999988888765 577777999999999994 567 7899999887
Q ss_pred CCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 86 GKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 86 g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
+++ +.. ..+...+.+++|+ |+|++|++|+.|++|++||+.+++++.++. ...|.+++|+ ++.+|++++
T Consensus 129 ~~~-----~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-- 200 (420)
T 3vl1_A 129 NLQ-----REIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS-- 200 (420)
T ss_dssp CEE-----EEETTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE--
T ss_pred cce-----eeecccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc--
Confidence 764 222 2455667889998 899999999999999999999999887775 5689999999 588888764
Q ss_pred CCCeeEEEEEcCCCeEEEEEee---cCCceeEEEEEe--------------------cCCCeEEEEeCCCcEEEEECCCC
Q 016446 162 SSHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIE--------------------QFNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~---~~~~~~~v~f~~--------------------~~~~~l~~~s~D~tIklWd~~tg 218 (389)
.|++|++||+.+|++++++.. |...+..++|.+ |++..+++++.|++|++||++++
T Consensus 201 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 201 -LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp -TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred -CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 458999999999999999985 344556666542 45678888999999999999999
Q ss_pred eEEEEc-ccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-Cc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 219 ELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 219 ~~~~~l-~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+++..+ .+|...|.+++|+|+++ +|++++ |++|++||++ ++ ++.++.+|.... |..++ +|+|++||+++.
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~-~~~~~~l~s~~~ 354 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP----INNVY-FAAGALFVSSGF 354 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC----EEEEE-EETTEEEEEETT
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC----ceEEE-eCCCCEEEEecC
Confidence 876665 56899999999999999 999998 9999999996 64 488888854432 67775 568999999876
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeE---------EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEE
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKC---------LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 364 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~---------l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 364 (389)
|++|+|||+.+++. ...+.+|. ..|.
T Consensus 355 -----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~v~ 389 (420)
T 3vl1_A 355 -----------DTSIKLDIISDPESERPAIEFETPTFLVSND----------------------------------DAVS 389 (420)
T ss_dssp -----------TEEEEEEEECCTTCCSCEECTTSCEEECCSS----------------------------------CCCC
T ss_pred -----------CccEEEEeccCCCCCccceeccCccEEccCC----------------------------------cceE
Confidence 49999999886422 22233333 5899
Q ss_pred EEEECCCCC---EEEEecCCCcEEEccC
Q 016446 365 SLFYDEERN---EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 365 svafSpdg~---~LaSgs~D~tIrlW~~ 389 (389)
+++|+|||+ .|++.+.++.+++|+.
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEec
Confidence 999999999 7777788999999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=352.79 Aligned_cols=305 Identities=12% Similarity=0.071 Sum_probs=241.7
Q ss_pred EEecccceeeeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCce
Q 016446 27 AFSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPG 104 (389)
Q Consensus 27 lW~~~tg~~l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~ 104 (389)
+|+..+.++.+++.+|. ..|.+++|+|+| +.|+++ +.| ..++||++..++. ...+. ..+...+.
T Consensus 57 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~----~~d------g~i~iwd~~~~~~---~~~~~~~~h~~~v~ 122 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD-RRVTSLEWHPTHPTTVAVG----SKG------GDIILWDYDVQNK---TSFIQGMGPGDAIT 122 (383)
T ss_dssp HHHHTTCEEEEEECCCS-SCEEEEEECSSCTTEEEEE----EBT------SCEEEEETTSTTC---EEEECCCSTTCBEE
T ss_pred cccccccceEEeccCCC-CCEEEEEECCCCCCEEEEE----cCC------CeEEEEeCCCccc---ceeeecCCcCCcee
Confidence 34555678888998875 899999999999 899994 467 7899999988875 22222 23566678
Q ss_pred eEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEec-----CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 105 FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 105 ~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl~-----~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+++|+ | ++++|++++.|++|++||+.+ +++..+. ...|.+++|+ ++.+|++++ .|++|++||+ ++++
T Consensus 123 ~~~~~-~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 123 GMKFN-QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGRLLLLGL-DGHE 196 (383)
T ss_dssp EEEEE-TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSEEEEEET-TSCE
T ss_pred EEEeC-CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCCEEEEEC-CCCE
Confidence 89998 7 789999999999999999975 5555553 2569999999 588888774 4589999998 6899
Q ss_pred EEEEeecCCceeEEEEEecCCC-eEEEEeCCCcEEEEECCC----CeEEEEcccCCCceEEEEEcC-CCcEEEEEc-CCe
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN----AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRT 250 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~t----g~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~t 250 (389)
+.++.+|...+..++|+ |++. .+++++.|++|++||+++ ++++..+ +|...|.+++|+| +|++|++++ |++
T Consensus 197 ~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~ 274 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE 274 (383)
T ss_dssp EEEEECSSSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred EEEeccCCCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence 99999999999999998 6676 788899999999999998 7788877 7999999999999 999999998 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCC--CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~--~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
|+|||+. ++++.++.+|...... ..+. +.|+|++..++.+.... +.. +++.|++|+|||+.+|+++.++.+|..
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~d-g~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPD-DQL-LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCC-TTT-CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred EEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCC-ccc-ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 9999997 9988888877532100 0012 24444444443322110 111 345679999999999999999998642
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
. ..|..++|+|||++||+|+ |++|+|||.
T Consensus 352 ~--------------------------------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 352 A--------------------------------GIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp C--------------------------------SCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred C--------------------------------ceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 0 4677789999999999998 999999984
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=377.55 Aligned_cols=304 Identities=12% Similarity=0.165 Sum_probs=241.2
Q ss_pred eeeeecCCcceEEEEEEeeCC-CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCC
Q 016446 36 ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNG 113 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg-~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG 113 (389)
...+.+| .+.|++|+|+|++ +.|++ ++.| ..++||++..++......... ..|...+.+|+|+ |||
T Consensus 375 ~~~l~~H-~~~V~~v~~~~~~~~~l~s----~s~D------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g 442 (694)
T 3dm0_A 375 KGTMRAH-TDMVTAIATPIDNADIIVS----ASRD------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDG 442 (694)
T ss_dssp EEEEECC-SSCEEEEECCTTCCSEEEE----EETT------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTS
T ss_pred hhhcccC-CceeEEEEecCCCCCEEEE----EeCC------CcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCC
Confidence 3457776 4999999999985 68888 5577 899999987654321111111 2455667889998 899
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE----eecCC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF----YHLLH 186 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl----~~~~~ 186 (389)
++|+||+.|++|||||+.+++++.++. ...|.+|+|| ++.+|++++ .|++|||||+.. ++..++ .+|..
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~D~~i~iwd~~~-~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS---RDRTIKLWNTLG-ECKYTISEGGEGHRD 518 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTS-CEEEEECSSTTSCSS
T ss_pred CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe---CCCEEEEEECCC-CcceeeccCCCCCCC
Confidence 999999999999999999999988775 5689999999 588888774 458999999765 555555 35777
Q ss_pred ceeEEEEEecCC--CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 187 RNKKVDFIEQFN--EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 187 ~~~~v~f~~~~~--~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
.+..++|+ |++ ..+++++.|++|+|||+++++++.++.+|...|.+++|+|+|++|+|++ |++|+|||+. |+++.
T Consensus 519 ~v~~~~~~-~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 519 WVSCVRFS-PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp CEEEEEEC-SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred cEEEEEEe-CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 89999998 444 4788899999999999999999999999999999999999999999999 9999999996 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
++..|. . |.+++||||+.+|++++ |+.|+|||+.+++++..+..|...... .....+
T Consensus 598 ~~~~~~-~-----v~~~~~sp~~~~l~~~~------------~~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~- 654 (694)
T 3dm0_A 598 SLEANS-V-----IHALCFSPNRYWLCAAT------------EHGIKIWDLESKSIVEDLKVDLKAEAE----KADNSG- 654 (694)
T ss_dssp CCBCSS-C-----EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred EecCCC-c-----EEEEEEcCCCcEEEEEc------------CCCEEEEECCCCCChhhhccccccccc----cccccc-
Confidence 887654 2 79999999999999875 368999999999999999876521000 000000
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
-....++.-.|++|+|||||++|+||+.||+||||+.
T Consensus 655 ----------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 655 ----------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ----------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 0000111235899999999999999999999999984
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=345.38 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=227.8
Q ss_pred ccEEEEEe--------eccEEEEEecCceEEEEeccc-------ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC
Q 016446 4 TKVIEIVA--------ARDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD 68 (389)
Q Consensus 4 ~~v~~i~~--------~~~~~a~~~~~gtiklW~~~t-------g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~ 68 (389)
..|..|.| .+++||+++.|++||+|++.+ |+++.++.+|. ..|.+++|+|+|+.|++ ++.
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~l~s----~s~ 96 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-HFVSDLALSQENCFAIS----SSW 96 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-SCEEEEEECSSTTEEEE----EET
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-CceEEEEECCCCCEEEE----EcC
Confidence 57899988 378999999999999999863 56788899875 89999999999999999 457
Q ss_pred CCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-----cCCc
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDKH 143 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-----~~~~ 143 (389)
| .+++|||+++|++. ..+ ..+...+.+|+|+ |||++|++++.|++|||||+. +++.... +...
T Consensus 97 D------~~v~lwd~~~~~~~--~~~--~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 97 D------KTLRLWDLRTGTTY--KRF--VGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDW 164 (343)
T ss_dssp T------SEEEEEETTSSCEE--EEE--ECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSC
T ss_pred C------CcEEEEECCCCcEE--EEE--cCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCce
Confidence 7 89999999998761 112 2355667889998 899999999999999999996 5554443 2468
Q ss_pred EEEEEEcC-C----------ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEE
Q 016446 144 VQEIKISP-G----------IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 212 (389)
Q Consensus 144 V~~vafS~-g----------~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl 212 (389)
|.+++|+| + .+|++++ .|++|++|| .+++++.++.+|...+..++|+ |++.+|++++.|++|+|
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLI 239 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEE---TTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEE
T ss_pred eeeeeeccccccccccCCCCCEEEEEc---CCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEE
Confidence 99999996 3 5787764 458999999 5789999999999999999998 78899999999999999
Q ss_pred EECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEE--Eec-----------cCcCCcCCCCee
Q 016446 213 LDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT--SFE-----------DHLLWHPDCNTN 277 (389)
Q Consensus 213 Wd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~--tl~-----------gh~~~~~~~~v~ 277 (389)
||+. .+.+...+ .|...|.+++|+|++++|+++.|++|+|||+. ++++. +++ +|... |.
T Consensus 240 wd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~ 313 (343)
T 2xzm_R 240 WDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-----CT 313 (343)
T ss_dssp EESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-----EE
T ss_pred EECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-----eE
Confidence 9995 44455544 34557999999999999987779999999996 66543 555 56655 79
Q ss_pred EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 278 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 278 sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
+++|+|||++||+|+.| |+|||||+++|+
T Consensus 314 ~~~~sp~g~~l~sg~~D-----------g~v~~w~~~~g~ 342 (343)
T 2xzm_R 314 SLAWNALGKKLFAGFTD-----------GVIRTFSFETSA 342 (343)
T ss_dssp EEEECSSSCCEEEEETT-----------SEEEEEEEEEEE
T ss_pred EEEECCCCCeEEEecCC-----------ceEEEEEEEccC
Confidence 99999999999999875 999999987764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=349.96 Aligned_cols=306 Identities=12% Similarity=0.160 Sum_probs=255.3
Q ss_pred EEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 6 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 6 v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
+..+.|.+++||+++.||+|++||..+++++.++.+|. ..|.+++|+|++ .|++ ++.| .++++|++.+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~-~l~s----~s~d------g~i~vwd~~~ 192 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD-GGVWALKYAHGG-ILVS----GSTD------RTVRVWDIKK 192 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECSTT-EEEE----EETT------SCEEEEETTT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC-cCEEEEEEcCCC-EEEE----EeCC------CCEEEEECCC
Confidence 56677779999999999999999999999999999875 899999999999 7888 4577 8899999998
Q ss_pred CCCCCcceeEeeecccCceeEEEec-CCCeEEEEecCCCeEEEEeCCCCeE-----------------------EEEec-
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------LYSIS- 140 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~tiklWdl~~g~~-----------------------l~tl~- 140 (389)
|+.. ..+ ..+...+..++|++ |++++|++|+.|++|++||+.+++. +..+.
T Consensus 193 ~~~~---~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 193 GCCT---HVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TEEE---EEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CcEE---EEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 8751 122 23555677788874 6889999999999999999987763 33444
Q ss_pred -CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 016446 141 -DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 219 (389)
Q Consensus 141 -~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~ 219 (389)
...|.++.. ++.+|++++ .|++|++||+.+++++.++.+|...+..++|+ |++..+++++.|++|++||+++++
T Consensus 269 ~~~~v~~~~~-~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 269 HMASVRTVSG-HGNIVVSGS---YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CSSCEEEEEE-ETTEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccceEEEEcC-CCCEEEEEe---CCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCc
Confidence 346766632 577888774 45899999999999999999999999999998 788999999999999999999999
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 220 LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 220 ~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
++.++.+|...|.+++|+ +++|++++ |++|++||++ ++....+. |... +..++|+|+|++|++|+ |
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~-d--- 411 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNL-----SAITTFYVSDNILVSGS-E--- 411 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTC-----CCEEEEEECSSEEEEEE-T---
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCC-----ccEEEEEeCCCEEEEec-C---
Confidence 999999999999999998 57899998 9999999997 77666553 3333 57899999999999987 3
Q ss_pred ccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 298 DQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
++|+|||+.+|+++++ +.+|. ..|++|+|+ +...++
T Consensus 412 --------g~i~iwd~~~g~~~~~~~~~~~----------------------------------~~v~~v~~~-~~~l~~ 448 (464)
T 3v7d_B 412 --------NQFNIYNLRSGKLVHANILKDA----------------------------------DQIWSVNFK-GKTLVA 448 (464)
T ss_dssp --------TEEEEEETTTCCEEESCTTTTC----------------------------------SEEEEEEEE-TTEEEE
T ss_pred --------CeEEEEECCCCcEEehhhccCC----------------------------------CcEEEEEec-CCEEEE
Confidence 8999999999999986 66665 589999998 445666
Q ss_pred EecCCCcEEEc
Q 016446 377 TGNRHGLVHVW 387 (389)
Q Consensus 377 Sgs~D~tIrlW 387 (389)
+++.|+.+.+|
T Consensus 449 ~~~~~g~~~i~ 459 (464)
T 3v7d_B 449 AVEKDGQSFLE 459 (464)
T ss_dssp EEEETTEEEEE
T ss_pred EEEeCCeEEEE
Confidence 66777766554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=325.26 Aligned_cols=279 Identities=13% Similarity=0.181 Sum_probs=241.0
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.++++++.+|. +.|.+++| |+|+.|+++ +.| ..+++|++..++.. ..+ ..+...+.+++|+ |+
T Consensus 8 ~~~~~~l~~h~-~~v~~~~~-~~~~~l~s~----~~d------g~v~vw~~~~~~~~--~~~--~~~~~~v~~~~~~-~~ 70 (313)
T 3odt_A 8 YQLSATLKGHD-QDVRDVVA-VDDSKVASV----SRD------GTVRLWSKDDQWLG--TVV--YTGQGFLNSVCYD-SE 70 (313)
T ss_dssp CEEEEEECCCS-SCEEEEEE-EETTEEEEE----ETT------SEEEEEEESSSEEE--EEE--EECSSCEEEEEEE-TT
T ss_pred HHHHHHhhCCC-CCcEEEEe-cCCCEEEEE----EcC------CcEEEEECCCCEEE--EEe--ecCCccEEEEEEC-CC
Confidence 37888899875 99999999 999999994 577 78999999777641 112 2345667889998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCC---eEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g---~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
|++|++++.|++|++|++.+. +++..+. ...|.+++| ++..|++++ .|++|++|| +++.+..+..|...
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~---~d~~i~~~d--~~~~~~~~~~~~~~ 144 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGS---WDKTAKVWK--EGSLVYNLQAHNAS 144 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEE---TTSEEEEEE--TTEEEEEEECCSSC
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEe---CCCCEEEEc--CCcEEEecccCCCc
Confidence 999999999999999998654 5566665 578999999 566787764 458999999 78999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEe
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl 264 (389)
+..+.|.++++..+++++.|++|++|| .+++++.+.. |...+.+++|+|+++ |++++ |++|++||++ ++++.++
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~ 221 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY 221 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh
Confidence 999999976889999999999999999 6777888877 999999999999999 77777 9999999997 9999999
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
.+|... |.+++|+|||+ |++++.| ++|++||+.+++++.++.+|.
T Consensus 222 ~~~~~~-----i~~~~~~~~~~-l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~------------------ 266 (313)
T 3odt_A 222 EGHESF-----VYCIKLLPNGD-IVSCGED-----------RTVRIWSKENGSLKQVITLPA------------------ 266 (313)
T ss_dssp ECCSSC-----EEEEEECTTSC-EEEEETT-----------SEEEEECTTTCCEEEEEECSS------------------
T ss_pred hcCCce-----EEEEEEecCCC-EEEEecC-----------CEEEEEECCCCceeEEEeccC------------------
Confidence 999887 89999999994 7787764 999999999999999999998
Q ss_pred ccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++++|+|||+ |++|+.|++|++|+.
T Consensus 267 ----------------~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 267 ----------------ISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ----------------SCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ----------------ceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 5899999999999 667999999999983
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=330.99 Aligned_cols=277 Identities=13% Similarity=0.156 Sum_probs=240.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..|.|+ +++||+++.||+|++|+..+|++++.+.+|. ..|.+++|+|+|+.|++ ++.| ..+++
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s----~~~d------~~i~v 91 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSNLLVS----ASDD------KTLKI 91 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEE----EETT------SEEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC-CceEEEEEcCCCCEEEE----ECCC------CEEEE
Confidence 3579999999 8999999999999999999999999999875 89999999999999999 4577 88999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
|++.++++. ..+ ..+...+..++|+ |++++|++|+.|++|++||+.+++++.++. ...|.+++|+ ++.+|++
T Consensus 92 wd~~~~~~~--~~~--~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 92 WDVSSGKCL--KTL--KGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EETTTCCEE--EEE--ECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCcEE--EEE--cCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 999988762 112 2345567789998 899999999999999999999999998886 4689999999 5888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE---
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA--- 233 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s--- 233 (389)
++ .|++|++||+.+++++.++. .+...+..++|+ |++.++++++.|++|++||++++++++.+.+|...+..
T Consensus 167 ~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 167 SS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp EE---TTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred Ee---CCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 74 45899999999999999886 455678889998 78899999999999999999999999999999775433
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
....+++++|++++ |++|++||++ +++++++++|... |.+++|+|++++||+++.+ .|++||||
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l~s~~~~---------~d~~i~~W 308 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-----VISTACHPTENIIASAALE---------NDKTIKLW 308 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECSSSSEEEEEECT---------TTCCEEEE
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-----EEEEeecCcCCceEEEEcc---------CCccEEEe
Confidence 33457899999999 9999999997 9999999999887 8999999999999999743 47999999
Q ss_pred eC
Q 016446 312 SI 313 (389)
Q Consensus 312 d~ 313 (389)
+.
T Consensus 309 ~~ 310 (312)
T 4ery_A 309 KS 310 (312)
T ss_dssp EC
T ss_pred cC
Confidence 85
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=358.01 Aligned_cols=348 Identities=11% Similarity=0.059 Sum_probs=286.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccc----eeeeeeecCCcce-EEEEEEee--CCCEEEEEEEeecCCCcce
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEV-IRSLFYNK--NNDSLITVSVYASDNFSSL 73 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg----~~l~tl~~~~~~~-v~sv~~sp--dg~~l~s~s~~~~~d~~~l 73 (389)
+..|..+.|+ +++||+++ ++.|++|+++++ ++++.+.+|. +. |.+++|+| ||+.||++ +.|
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~----~~d---- 87 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSG----DES---- 87 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEE----ETT----
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCC-CceEEEEEECcCCCCCEEEEe----cCC----
Confidence 5678888999 88999988 899999999999 9999999986 78 99999999 99999994 567
Q ss_pred eeeeeeEeEeccCCCCC---cceeEe-eecccCceeEEEecCCCeEEEEecCC----CeEEEEeCCCCeEEEEec--CCc
Q 016446 74 KCRSTKIEYIRRGKPDS---GFALFE-SESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS--DKH 143 (389)
Q Consensus 74 ~~~~~~l~~i~~g~~~~---~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D----~tiklWdl~~g~~l~tl~--~~~ 143 (389)
..+++|++.+|+... ...+.. ..+...+.+++|+ |||++|++++.| +.|++|| +++++..+. ...
T Consensus 88 --g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 88 --GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp --SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred --CEEEEEeCCCCcccccccccccchhhcccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 789999997661100 011222 2345567889998 999999999988 7999998 677777775 468
Q ss_pred EEEEEEcC-Cc-eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC---ceeEEEEEecC-CCeEEEEeCCCcEEEEECCC
Q 016446 144 VQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---RNKKVDFIEQF-NEKLLVKQENENLQILDVRN 217 (389)
Q Consensus 144 V~~vafS~-g~-~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~---~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~t 217 (389)
|.+++|+| +. ++++++ .|++|++||+.+++++.++.+|.. .+..++|+ |+ +..+++++.|++|++||+++
T Consensus 163 v~~~~~~~~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVG---DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEE---TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTT
T ss_pred EEEEEECCCCCcEEEEEe---CCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCC
Confidence 99999995 55 677764 458999999999999999999988 89999998 67 88899999999999999999
Q ss_pred CeEEEEc-c---cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 218 AELMEVS-R---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 218 g~~~~~l-~---gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
++++..+ . +|...|.+++|+ ++++|++++ |++|++||++ ++++.++..|...+.. .+.++.|+ ++++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~ 315 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN-QQVGVVAT-GNGRIISL 315 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG-CEEEEEEE-ETTEEEEE
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC-ceeEEEeC-CCCeEEEE
Confidence 9999999 6 999999999999 999999998 9999999997 9999999987432221 26788885 99999999
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccc---ccccCCEEEEEE
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV---GEALEDITSLFY 368 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~svaf 368 (389)
+.| ++|++||+.+++++.++.+|...+....+ +. ..+...+++.++|+.. .+|...|.+++|
T Consensus 316 ~~~-----------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 316 SLD-----------GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp ETT-----------SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred ECC-----------CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 865 99999999999999999999865444343 22 4444444444444422 567789999999
Q ss_pred CCCCCEEEEecCCCcEEEcc
Q 016446 369 DEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 369 Spdg~~LaSgs~D~tIrlW~ 388 (389)
|+++.|++++.|++|++|+
T Consensus 381 -~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 381 -SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp -CSTTCCEEEETTTEEEETT
T ss_pred -CCCcEEEEEeCCCCEEEEE
Confidence 7788999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=340.59 Aligned_cols=236 Identities=13% Similarity=0.198 Sum_probs=201.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC--CeEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~--g~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd 171 (389)
|...+.+++|+ |||++||+|+.|++|||||+++ ++++.++. ...|++|+|+ | |.+||+++ .|++|||||
T Consensus 8 h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s---~D~~v~iWd 83 (297)
T 2pm7_B 8 HNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDGKVMIWK 83 (297)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTTEEEEEE
T ss_pred CcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc---CCCEEEEEE
Confidence 44567789998 9999999999999999999974 46777775 4689999998 4 78898874 568999999
Q ss_pred cCCCe--EEEEEeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCC-------
Q 016446 172 IEDGT--VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYE------- 239 (389)
Q Consensus 172 ~~tG~--~l~tl~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspd------- 239 (389)
+++|+ ++.++.+|...+.+|+|++.. +..+++++.|++|+|||++++.. ...+.+|...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 99984 677888899999999998432 67888999999999999988642 4677899999999999997
Q ss_pred ------CcEEEEEc-CCeEEEEeCC-Cc----EEEEeccCcCCcCCCCeeEEEECCCC---CEEEEEecCCCcccccCCC
Q 016446 240 ------NQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 240 ------g~~laS~s-D~tIklWd~~-G~----~l~tl~gh~~~~~~~~v~sv~fSpdG---~~laS~s~D~~~~~~~~s~ 304 (389)
+++||+++ |++|||||++ ++ ++.+|++|..+ |++|+|+|++ ++|||+|.|
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~-----V~~v~~sp~~~~~~~las~s~D---------- 228 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYMASVSQD---------- 228 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEETT----------
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc-----eEEEEECCCCCCceEEEEEECC----------
Confidence 57999999 9999999996 65 77899999987 8999999995 899999875
Q ss_pred CCeEEEEeCCCCe---EEEEe--cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 305 AGSINVSSILTGK---CLAKI--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 305 D~tIklWd~~tg~---~l~tl--~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
++|||||+.+++ ....+ .+|. ..|++++|||||++||+|+
T Consensus 229 -~~v~iWd~~~~~~~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 229 -RTCIIWTQDNEQGPWKKTLLKEEKFP----------------------------------DVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp -SCEEEEEESSTTSCCEEEESSSSCCS----------------------------------SCEEEEEECSSSCCEEEEE
T ss_pred -CcEEEEEeCCCCCccceeeeecccCC----------------------------------CcEEEEEECCCCCEEEEEc
Confidence 999999998753 22334 3444 5899999999999999999
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
.|++|+||+
T Consensus 274 ~D~~v~lw~ 282 (297)
T 2pm7_B 274 GDNKVTLWK 282 (297)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999997
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=340.25 Aligned_cols=291 Identities=11% Similarity=0.178 Sum_probs=238.0
Q ss_pred eeeeeecCCcceEEEEEEeeC---CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEec
Q 016446 35 RICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDD 110 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spd---g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~ 110 (389)
+...+..+|...|.+|+|+|+ ++.++.++ +++ ..+++|++.+++.......+. ..+...+.+++|+
T Consensus 9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~--~~~-------~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 78 (366)
T 3k26_A 9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFAT--VGS-------NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT- 78 (366)
T ss_dssp EEEEEECTTCSCEEEEEECTTCCTTSCEEEEE--EET-------TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-
T ss_pred EEEEeecCCCCceEEEEEecccCCCCceEEEE--CCC-------CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-
Confidence 334555556699999999995 55333322 233 478999998777522111111 1133457789998
Q ss_pred CC----CeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCeEEEEE-
Q 016446 111 VN----GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVF- 181 (389)
Q Consensus 111 pd----G~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~~l~tl- 181 (389)
|+ |++|++|+.|++|++||+.+++++.++. ...|.+++|+| +.+|++++ .|++|++||+.+++++..+
T Consensus 79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeecCeEEEEec
Confidence 78 7899999999999999999999988886 46899999996 67777764 4589999999999999999
Q ss_pred --eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc----------------------------CCCce
Q 016446 182 --YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----------------------------EFMTP 231 (389)
Q Consensus 182 --~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g----------------------------h~~~v 231 (389)
..|...+..++|+ |++..+++++.|++|++||+++++++..+.. |...|
T Consensus 156 ~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 156 GVEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp STTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred ccccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 6889999999998 6888999999999999999999887655554 99999
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--------------EEEEeccCcCCcCCCCeeEEEECCC--CCEEEEEec
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------------LVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCK 293 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~-G~--------------~l~tl~gh~~~~~~~~v~sv~fSpd--G~~laS~s~ 293 (389)
.+++|+ +++|++++ |++|++||+. ++ ++.++.+|... |+.++|+|| |++||+|+.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD-----IWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC-----SSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc-----EEEEEEcCCCCCcEEEEEec
Confidence 999999 77999998 9999999986 54 48899999876 789999999 999999876
Q ss_pred CCCcccccCCCCCeEEEEeCCCCe----EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGK----CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 369 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS 369 (389)
||+|++||+.+++ .+.++.+|.. ...|++++|+
T Consensus 308 -----------dg~i~vwd~~~~~~~~~~~~~~~~~~~--------------------------------~~~v~~~~~s 344 (366)
T 3k26_A 308 -----------VGKLYVWDLEVEDPHKAKCTTLTHHKC--------------------------------GAAIRQTSFS 344 (366)
T ss_dssp -----------TSCEEEEECCSSSGGGCEEEEECCTTC--------------------------------CSCEEEEEEC
T ss_pred -----------CCcEEEEECCCCCCccccceEEccccc--------------------------------CCceEEEEeC
Confidence 4999999999986 4458888841 1599999999
Q ss_pred CCCCEEEEecCCCcEEEccC
Q 016446 370 EERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 370 pdg~~LaSgs~D~tIrlW~~ 389 (389)
|||++||+|+.||+|++||.
T Consensus 345 ~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 345 RDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TTSSEEEEEETTSEEEEEEC
T ss_pred CCCCeEEEEeCCCEEEEEEe
Confidence 99999999999999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=336.83 Aligned_cols=286 Identities=13% Similarity=0.114 Sum_probs=234.1
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC---CeE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN---GKV 115 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd---G~~ 115 (389)
+.+ |.+.|.+|+|+|+|+.|+.++.....| ..++||++..++. .......+...+.+++|+ |+ |++
T Consensus 14 ~~~-h~~~v~~~~~~p~~~~l~~~~s~~~~d------~~v~iw~~~~~~~---~~~~~~~~~~~v~~~~~~-~~~~~~~~ 82 (357)
T 3i2n_A 14 QKG-FNYTVFDCKWVPCSAKFVTMGNFARGT------GVIQLYEIQHGDL---KLLREIEKAKPIKCGTFG-ATSLQQRY 82 (357)
T ss_dssp EEE-CSSCEEEEEECTTSSEEEEEEC--CCC------EEEEEEEECSSSE---EEEEEEEESSCEEEEECT-TCCTTTCC
T ss_pred ccC-CCCceEEEEEcCCCceEEEecCccCCC------cEEEEEeCCCCcc---cceeeecccCcEEEEEEc-CCCCCCce
Confidence 345 468999999999998776543211127 8999999998875 222233455667889998 77 799
Q ss_pred EEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEE------Ec-CCceEEEEecCCCCeeEEEEEcCCCe-EEEEEeec
Q 016446 116 LTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIK------IS-PGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHL 184 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~va------fS-~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~~~ 184 (389)
|++|+.|++|++||+.+++ ++..+. ...|.+++ |+ ++.+|++++ .|++|++||+.+++ ++.++..|
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCEEEECTTSCSSCSEEECCC
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeEEEEeCCCCCCcceecccc
Confidence 9999999999999999888 777775 46899995 56 477888774 45899999999998 78888766
Q ss_pred CC----ceeEEEEEe---cCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC---CCcEEEEEc-CCeEEE
Q 016446 185 LH----RNKKVDFIE---QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFR-NRTVAV 253 (389)
Q Consensus 185 ~~----~~~~v~f~~---~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp---dg~~laS~s-D~tIkl 253 (389)
.+ .+..++|.+ |++..+++++.|++|++||+++++++.. ..|...|.+++|+| ++++|++++ |++|++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 55 678888532 6788999999999999999999998554 67889999999999 999999998 999999
Q ss_pred EeCC-CcEEEEec-----cCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCC----------
Q 016446 254 WNFR-GELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTG---------- 316 (389)
Q Consensus 254 Wd~~-G~~l~tl~-----gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg---------- 316 (389)
||++ ++++..+. +|... |.+++|+|+|+ +|++++.| |+|+|||+.++
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKST-----VWQVRHLPQNRELFLTAGGA-----------GGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSC-----EEEEEEETTEEEEEEEEETT-----------SEEEEEEEECCSCC--CCTTS
T ss_pred EeCcCCCcccceeeeccCCCcCC-----EEEEEECCCCCcEEEEEeCC-----------CcEEEeecCCCcccccccCCC
Confidence 9996 76655554 88876 89999999999 89998765 99999999865
Q ss_pred ---------eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE-EecCCCcEEE
Q 016446 317 ---------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHV 386 (389)
Q Consensus 317 ---------~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La-Sgs~D~tIrl 386 (389)
+++.++.+|. ..|++++|+|||+.|+ ||+.|++|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST----------------------------------QPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS----------------------------------SCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred CccccccccceeeccccCC----------------------------------CCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 4666777776 6999999999999998 8999999999
Q ss_pred ccC
Q 016446 387 WSN 389 (389)
Q Consensus 387 W~~ 389 (389)
|+.
T Consensus 349 w~~ 351 (357)
T 3i2n_A 349 LIV 351 (357)
T ss_dssp EEE
T ss_pred EEC
Confidence 983
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=327.49 Aligned_cols=274 Identities=10% Similarity=0.082 Sum_probs=226.6
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+.|+|||++ .||. + .| ++|+|||+.+|++. ..+. +.+...+.+|+|+ |+|++||+|+.|++|
T Consensus 28 ~~~l~WS~~~-~lAv----g-~D------~tV~iWd~~tg~~~---~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAV----A-LD------NSVYLWSASSGDIL---QLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECTTS-EEEE----E-ET------TEEEEEETTTCCEE---EEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred ceEEEECCCC-EEEE----E-eC------CEEEEEECCCCCEE---EEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcE
Confidence 4779999987 5665 2 35 78999999999872 2333 4566668899998 899999999999999
Q ss_pred EEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-eEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 126 KVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 126 klWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
+|||+++++++.++.++......++ ++..|++++ .++.+++|+..++ ..+.++.+|...+..+.|. +++..+++
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s 167 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS---RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLAS 167 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred EEeecCCceeEEEecCccceEEEeecCCCEEEEEe---cCCceEeeecCCCceeEEEEcCccCceEEEEEc-CCCCEEEE
Confidence 9999999999988875433334455 467777764 4579999998876 5668888999999999997 67889999
Q ss_pred EeCCCcEEEEECCCCeE----EEEcccCCCceEEEEEcCCCcEE---EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 204 KQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLF---LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~----~~~l~gh~~~v~sv~fspdg~~l---aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
++.|++|+|||+++++. ......|...|.+++++|++..+ ++++ |++|+|||.+ ++...... |...
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~---- 242 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ---- 242 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC----
T ss_pred EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee----
Confidence 99999999999998764 45567888999999999977643 3556 9999999997 66666554 3333
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceec
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 354 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+..++|+|+++.+++++. +.|++|+|||+.+++++++|+||+
T Consensus 243 -v~~~~~~~~~~~~~~~sg---------~~d~~i~iwd~~~~~~~~~l~gH~---------------------------- 284 (318)
T 4ggc_A 243 -VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHT---------------------------- 284 (318)
T ss_dssp -EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCS----------------------------
T ss_pred -eeeeeecccccceEEEEE---------cCCCEEEEEECCCCcEEEEEcCCC----------------------------
Confidence 799999999999998763 357999999999999999999998
Q ss_pred ccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 355 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 355 ~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|||||++|||||.|++|||||.
T Consensus 285 ------~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 285 ------SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ------SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ------CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 59999999999999999999999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-43 Score=337.77 Aligned_cols=299 Identities=15% Similarity=0.168 Sum_probs=241.1
Q ss_pred CceEEEEecccceeeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEe----ccCCCCCc---ce
Q 016446 22 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI----RRGKPDSG---FA 93 (389)
Q Consensus 22 ~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i----~~g~~~~~---~~ 93 (389)
...+.+|+.+..........| .+.|.+++|+|+|+ .||++ +.| ..+++|++ ..|+.... ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVK-LDNIVSSTWNPLDESILAYG----EKN------SVARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp ----------CCCEECEEEEE-CSCCSEEEECSSCTTEEEEE----ETB------TEEEEEEEEEC------CEEEEEEE
T ss_pred ccccccccchhhhhheeeeec-cCceEEEEECCCCCcEEEEe----cCC------ceEEEEEEecccCCccccccccccc
Confidence 345567887544333333333 37899999999999 99994 567 78999999 88773100 01
Q ss_pred eEeee---------cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 94 LFESE---------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 94 l~~~~---------~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
.+.+. +...+.+++|+ |||++||+++.|++|++|| .+++++..+. ...|.+++|+ ++.+|++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 168 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD-- 168 (425)
T ss_dssp EEECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE--
T ss_pred cccccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe--
Confidence 11111 23457789998 8999999999999999999 6888888886 4689999999 588888774
Q ss_pred CCCeeEEEEEcCCCeEEEEEeecCCc---------------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHLLHR---------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~~~~---------------~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
.|++|++||+.+|+++..+..+... +..++|++ ++.+++++.|+.|++||+.+++++..+.+
T Consensus 169 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 245 (425)
T 1r5m_A 169 -VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIG 245 (425)
T ss_dssp -TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred -cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeecc
Confidence 4589999999999999999987776 89999984 57899999999999999999999999999
Q ss_pred CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 227 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
|...|.+++|+|++++|++++ |++|++||+. ++++.++.+|... |.+++|+||| +|++++.|
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~-~l~~~~~d---------- 309 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS-----IVSASWVGDD-KVISCSMD---------- 309 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC-----EEEEEEETTT-EEEEEETT----------
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc-----EEEEEECCCC-EEEEEeCC----------
Confidence 999999999999999999999 9999999997 8999999999876 8999999999 99998765
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 305 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
++|++||+.+++++..+.+|. ..|.+++|+|||++||+|+.|++|
T Consensus 310 -~~i~i~d~~~~~~~~~~~~~~----------------------------------~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 310 -GSVRLWSLKQNTLLALSIVDG----------------------------------VPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp -SEEEEEETTTTEEEEEEECTT----------------------------------CCEEEEEECTTSSEEEEEETTSCE
T ss_pred -CcEEEEECCCCcEeEecccCC----------------------------------ccEEEEEEcCCCCEEEEEECCCeE
Confidence 999999999999999999998 589999999999999999999999
Q ss_pred EEccC
Q 016446 385 HVWSN 389 (389)
Q Consensus 385 rlW~~ 389 (389)
++||.
T Consensus 355 ~i~~~ 359 (425)
T 1r5m_A 355 NVYDL 359 (425)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=358.32 Aligned_cols=302 Identities=14% Similarity=0.103 Sum_probs=239.3
Q ss_pred eeeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 34 RRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
+...+..++ ...|.+|+|+| +++.||+ |+.| ..|+|||+..++.. .+.. ..|.+.|.+|+|+|.
T Consensus 110 ~~~~~~~~~-~~~V~~l~~~P~~~~~las----Gs~d------g~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 110 RILQKAAPF-DRRATSLAWHPTHPSTVAV----GSKG------GDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPL 175 (435)
T ss_dssp TSCCEEEEC-SSCEEEEEECSSCTTCEEE----EETT------SCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSS
T ss_pred eecccCCCC-CCCEEEEEEeCCCCCEEEE----EeCC------CEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCC
Confidence 334455665 47899999999 4678888 5677 88999999877642 1222 346667889999844
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec----CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~----~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|+++|+|||.|++|||||++++.+..... ...|.+++|+ ++.+||++ +.|++|++||+. |+++.++.+|..
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~i~~wd~~-~~~~~~~~~h~~ 251 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGNVILLNMD-GKELWNLRMHKK 251 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSBEEEEESS-SCBCCCSBCCSS
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCcEeeeccC-cceeEEEecccc
Confidence 89999999999999999997665443332 2368899999 68888876 456899999985 688899999999
Q ss_pred ceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEE---cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE
Q 016446 187 RNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 260 (389)
Q Consensus 187 ~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~tg~~~~~---l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~ 260 (389)
.|..|+|+ |++. .+++++.|++|+|||+++++.... ..+|...|.+++|+|||++|++++ |++|+|||+. +++
T Consensus 252 ~v~~v~~~-p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 252 KVTHVALN-PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp CEEEEEEC-TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred eEEeeeec-CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 99999998 5554 566789999999999998776443 468999999999999999999999 9999999996 999
Q ss_pred EEEeccCcCCcCC-CCeeEEEECCCCCEEEEEecCCCccc-ccCCCCCeEEEEeCCCCeEEEEecC-CCCCCCcccccCC
Q 016446 261 VTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGS 337 (389)
Q Consensus 261 l~tl~gh~~~~~~-~~v~sv~fSpdG~~laS~s~D~~~~~-~~~s~D~tIklWd~~tg~~l~tl~g-H~~~~~~~~~~~~ 337 (389)
...+.+|...... ..+..+.|+|++.++++++.+..... +.+..+++|++||+.+|+++.++.+ |.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~----------- 399 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES----------- 399 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC-----------
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC-----------
Confidence 9999888653211 12346789999999998876543333 4455668999999999999999864 54
Q ss_pred CCCCCccccccccceecccccccCCEEEE-EECCCCCEEEEecCCCcEEEccC
Q 016446 338 SSTGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~V~sv-afSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.++ +|||||++||||+ |++|+||+.
T Consensus 400 -----------------------~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 400 -----------------------SGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp -----------------------CCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred -----------------------CcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 477777 7999999999987 889999984
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=340.01 Aligned_cols=301 Identities=9% Similarity=0.017 Sum_probs=244.8
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc-ceeEe-eecccCceeEEEecCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFE-SESLKWPGFVEFDDVN 112 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~-~~l~~-~~~~~~~~~v~Fs~pd 112 (389)
+..++.+| .+.|.+|+|+| +.|++ ++.| ..+++|++..++.... ..+.. ..+...+.+++|+ |+
T Consensus 8 ~~~~~~~h-~~~i~~~~~~~--~~l~s----~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~ 73 (397)
T 1sq9_A 8 TANAGKAH-DADIFSVSACN--SFTVS----CSGD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QA 73 (397)
T ss_dssp EEEESSCS-SSCEEEEEECS--SEEEE----EETT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EE
T ss_pred hhhhhhhh-hcCeEEEEecC--CeEEE----EcCC------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-cc
Confidence 34556776 48999999999 88888 4577 8999999988872111 01121 2355567889998 88
Q ss_pred ----C---eEEEEecCCCeEEEEeCCCCeE-----EEEec-------CCcEEEEEEc----C-Cce-EEEEecCCCCeeE
Q 016446 113 ----G---KVLTYSAQDSIYKVFDLKNYTM-----LYSIS-------DKHVQEIKIS----P-GIM-LLIFNRSSSHVPL 167 (389)
Q Consensus 113 ----G---~~Las~s~D~tiklWdl~~g~~-----l~tl~-------~~~V~~vafS----~-g~~-la~~~~~s~d~ti 167 (389)
| ++|++++.|++|++||+.++++ +..+. ...|.+++|+ | +.+ |++++ .|++|
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i 150 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---VKGTT 150 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---TTSCE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe---CCCcE
Confidence 9 9999999999999999988886 77764 2689999999 6 666 77764 45899
Q ss_pred EEEEcCC------CeEEE-----EEee-------cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc---
Q 016446 168 KILSIED------GTVLK-----VFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--- 226 (389)
Q Consensus 168 klWd~~t------G~~l~-----tl~~-------~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--- 226 (389)
++||+.+ +++++ ++.+ |...+..++|+ |++ .+++++.|++|++||+++++++..+.+
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 9999999 88888 8854 77889999998 667 888899999999999999999999999
Q ss_pred C---CCceEEEEEcCCCcEEEEEc-C---CeEEEEeCC-CcEEEEecc-------------CcCCcCCCCeeEEEECCCC
Q 016446 227 E---FMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFED-------------HLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 227 h---~~~v~sv~fspdg~~laS~s-D---~tIklWd~~-G~~l~tl~g-------------h~~~~~~~~v~sv~fSpdG 285 (389)
| ...|.+++|+|++++|++++ | ++|++||+. ++++.++.+ |... |.+++|+|||
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc-----EEEEEECCCC
Confidence 9 99999999999999999998 9 999999996 999999999 8876 8999999999
Q ss_pred CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec------CCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 286 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN------ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 286 ~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~------gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
++|++++.| ++|+|||+.+++++.++. +|... .+.+. . .....|
T Consensus 304 ~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~g~-----------~--~~~~~~ 353 (397)
T 1sq9_A 304 ETLCSAGWD-----------GKLRFWDVKTKERITTLNMHCDDIEIEED------ILAVD-----------E--HGDSLA 353 (397)
T ss_dssp SEEEEEETT-----------SEEEEEETTTTEEEEEEECCGGGCSSGGG------CCCBC-----------T--TSCBCS
T ss_pred CEEEEEeCC-----------CeEEEEEcCCCceeEEEecccCcccchhh------hhccc-----------c--cccccc
Confidence 999999865 999999999999999999 77100 00000 0 000111
Q ss_pred cCCEEEEEECCCC----------CEEEEecCCCcEEEccC
Q 016446 360 LEDITSLFYDEER----------NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 360 ~~~V~svafSpdg----------~~LaSgs~D~tIrlW~~ 389 (389)
...|++++|+||| ++|++|+.|++|++|+.
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 3699999999999 79999999999999983
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=350.08 Aligned_cols=267 Identities=14% Similarity=0.160 Sum_probs=210.4
Q ss_pred EEEEecCceEEEEecccc---eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 16 VFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg---~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
-.+.+...+|+||+...+ +++++++++. .+|..|+|+||-.-|+.+ ..|++
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~---------------------~~~~~---- 109 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAE-VPVLQIVPVPDVYNLVCV---------------------ALGNL---- 109 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCS-SCEEEECCCTTCCSCEEE---------------------EECSS----
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccC-ceeEEEEEcCcccceeee---------------------eeccc----
Confidence 333444679999999888 9999999985 899999999998777763 34554
Q ss_pred eeEeeecccCceeEEEecCC----CeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEE
Q 016446 93 ALFESESLKWPGFVEFDDVN----GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pd----G~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tik 168 (389)
....+.+++|| || ++++++++. ++++|++.+|+++.+ +..+.|++|+
T Consensus 110 ------~~~~v~sla~s-pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~s--------------------s~~g~d~~V~ 160 (356)
T 2w18_A 110 ------EIREIRALFCS-SDDESEKQVLLKSGN--IKAVLGLTKRRLVSS--------------------SGTLSDQQVE 160 (356)
T ss_dssp ------SEEEEEEECC-------CCEEEEEEEE--EEEEEEETTTEEEEE--------------------ESSSTTCEEE
T ss_pred ------cccceEEEEEC-CCccccccEEEeCCC--eEEEEecCCCcEEEe--------------------cccCCCCcEE
Confidence 11234679998 99 999999884 488998766554333 2334568999
Q ss_pred EEEc-CCCeEEEEEeecCCceeEEEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC---ceEEEEEcCCCcE
Q 016446 169 ILSI-EDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAELMEVSRTEFM---TPSAFIFLYENQL 242 (389)
Q Consensus 169 lWd~-~tG~~l~tl~~~~~~~~~v~f~~~--~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~---~v~sv~fspdg~~ 242 (389)
+|++ ++|+.+.++.+|...+..++|++. +++.|++++.|+||||||+++|++++++.+|.. .+..++|+|||++
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 9999 569999999999999999999953 457888899999999999999999999987654 6777899999998
Q ss_pred E------------EEEc-CCeEEEEeCC-CcEEEEe-----ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 243 F------------LTFR-NRTVAVWNFR-GELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 243 l------------aS~s-D~tIklWd~~-G~~l~tl-----~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
+ +|++ |+|||+||.. |+++.++ .||... +.+..+ +|.++|||+.|
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-----~lsg~~--sg~~lASgS~D--------- 304 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-----FLEGDV--KDHCAAAILTS--------- 304 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC-----EEEEEE--ETTEEEEEETT---------
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-----eEcccc--CCCEEEEEcCC---------
Confidence 7 6678 9999999997 9988877 477643 334444 49999999875
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
+||||||+.+|+|+++|++|.+ ..+.+|+|||||++|||||.|++
T Consensus 305 --gTIkIWDl~tGk~l~tL~gH~~---------------------------------~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 305 --GTIAIWDLLLGQCTALLPPVSD---------------------------------QHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp --SCEEEEETTTCSEEEEECCC-----------------------------------CCCCEEEECSSSSEEEEECTTSC
T ss_pred --CcEEEEECCCCcEEEEecCCCC---------------------------------CeEEEEEECCCCCEEEEEECCCc
Confidence 9999999999999999999983 23446999999999999999999
Q ss_pred EEEcc
Q 016446 384 VHVWS 388 (389)
Q Consensus 384 IrlW~ 388 (389)
|||||
T Consensus 350 IklWd 354 (356)
T 2w18_A 350 IFVYH 354 (356)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99998
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=325.31 Aligned_cols=278 Identities=9% Similarity=0.079 Sum_probs=228.9
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEecccc-----eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRETN-----RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 74 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~tg-----~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~ 74 (389)
+..|.+|.|+ +++||+++.||+|||||+.++ .+++++.+|. ..|.+++|+|||+.|+++ +.|
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-~~V~~~~~s~dg~~l~s~----~~d----- 107 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-HFVSDVVISSDGQFALSG----SWD----- 107 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT-----
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-CCEEEEEECCCCCEEEEE----ccc-----
Confidence 3579999998 579999999999999998654 4678888874 899999999999999994 577
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE-ec--CCcEEEEEEcC
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS--DKHVQEIKISP 151 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t-l~--~~~V~~vafS~ 151 (389)
..+++|+...+... .........+..+.|+ |++++|++++.|+.+++||+........ +. ...|..++|++
T Consensus 108 -~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 108 -GTLRLWDLTTGTTT----RRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp -SEEEEEETTTTEEE----EEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred -ccceEEeeccccee----eeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 78888987666531 1112233334557886 8999999999999999999876654332 22 46899999993
Q ss_pred ---CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC
Q 016446 152 ---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 152 ---g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
...++++ +.|++|++||+++++++.++.+|...+.+|+|+ |++.++++++.|++|+|||+.+++++..+.+|
T Consensus 182 ~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~- 256 (340)
T 4aow_A 182 NSSNPIIVSC---GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 256 (340)
T ss_dssp CSSSCEEEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEECS-
T ss_pred CCCCcEEEEE---cCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeeeecCC-
Confidence 3455554 456899999999999999999999999999998 78899999999999999999999999998876
Q ss_pred CceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec---------cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 016446 229 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE---------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 298 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~---------gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~ 298 (389)
..|.+++|+|++.+++++.|++|+|||++ +.++.+++ +|... |++++|||||++||||+.|
T Consensus 257 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~D---- 327 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----CTSLAWSADGQTLFAGYTD---- 327 (340)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-----EEEEEECTTSSEEEEEETT----
T ss_pred ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-----EEEEEECCCCCEEEEEeCC----
Confidence 47999999999998877779999999997 67777665 45544 8999999999999999875
Q ss_pred cccCCCCCeEEEEeCCCCe
Q 016446 299 QWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~ 317 (389)
|+|||||++||+
T Consensus 328 -------g~v~iW~~~tGt 339 (340)
T 4aow_A 328 -------NLVRVWQVTIGT 339 (340)
T ss_dssp -------SCEEEEEEEC--
T ss_pred -------CEEEEEeCCCcC
Confidence 999999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=364.97 Aligned_cols=278 Identities=13% Similarity=0.119 Sum_probs=241.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|..|.|+ +++||+++.||+|++|+..+|++++++.+|. ..|.+++|+|+|+.|+++ +.| ..+++
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~----~~d------g~i~v 81 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVG----SDD------FRIRV 81 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEE----ETT------SEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEE----eCC------CeEEE
Confidence 4679999999 9999999999999999999999999999875 899999999999999994 567 78999
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC-eEEEEec--CCcEEEEEEcC--Cce
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS--DKHVQEIKISP--GIM 154 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g-~~l~tl~--~~~V~~vafS~--g~~ 154 (389)
|++.+|+. +.. ..+...+.+++|+ |+|++|++++.|++|++||+.++ .+...+. ...|.+++|+| +..
T Consensus 82 w~~~~~~~-----~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 82 FNYNTGEK-----VVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp EETTTCCE-----EEEEECCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred EECCCCcE-----EEEEecCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 99998876 222 2355667889998 89999999999999999999887 5666664 57899999997 567
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceE
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 232 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~ 232 (389)
|++++ .|++|++||+.+++...++..+. ..+..++|++. ++..+++++.|++|++||+.+++++.++.+|...|.
T Consensus 156 l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 232 (814)
T 3mkq_A 156 FASGC---LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232 (814)
T ss_dssp EEEEE---TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred EEEEe---CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 77764 45899999999999998888554 78899999832 678899999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC--EEEEEecCCCcccccCCCCCeE
Q 016446 233 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 233 sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~--~laS~s~D~~~~~~~~s~D~tI 308 (389)
+++|+|+|++|++++ ||+|++||+. ++++.++..|... |++++|+|+|+ ++++++. +.+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~------------~~~ 295 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNYIASGFD------------NGF 295 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-----EEEEEECTTCGGGEEEEEET------------TEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-----EEEEEEccCCCceEEEEEeC------------CCE
Confidence 999999999999999 9999999997 9999999998776 89999999998 6777653 678
Q ss_pred EEEeCCCCe
Q 016446 309 NVSSILTGK 317 (389)
Q Consensus 309 klWd~~tg~ 317 (389)
.+|++..+.
T Consensus 296 ~~~~~~~~~ 304 (814)
T 3mkq_A 296 TVLSLGNDE 304 (814)
T ss_dssp EEEECSCCS
T ss_pred EEEEcCCCC
Confidence 899876543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=343.19 Aligned_cols=235 Identities=13% Similarity=0.168 Sum_probs=201.7
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklWd 171 (389)
|...+.+|+|+ |||++||+|+.|++|||||+.+++ ++.++. ...|++|+|+ | |.+||+++ .|++|+|||
T Consensus 12 H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s---~D~~v~iWd 87 (316)
T 3bg1_A 12 HEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS---YDRKVIIWR 87 (316)
T ss_dssp --CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE---TTSCEEEEC
T ss_pred ccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE---CCCEEEEEE
Confidence 44567789998 899999999999999999998875 456665 5689999998 4 78998874 568999999
Q ss_pred cCCC--eEEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCCe---EEEEcccCCCceEEEEEcCC-----
Q 016446 172 IEDG--TVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE----- 239 (389)
Q Consensus 172 ~~tG--~~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg~---~~~~l~gh~~~v~sv~fspd----- 239 (389)
+++| +++.++.+|...+.+|+|+ |+ +..|++++.|++|+|||++++. +...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~-p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWA-PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEEC-CTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred CCCCcceEEEEccCCCCceEEEEEC-CCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 9998 4778888999999999998 54 5688889999999999998763 35678899999999999998
Q ss_pred ------------CcEEEEEc-CCeEEEEeCC-C---cEEEEeccCcCCcCCCCeeEEEECCCC----CEEEEEecCCCcc
Q 016446 240 ------------NQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPED 298 (389)
Q Consensus 240 ------------g~~laS~s-D~tIklWd~~-G---~~l~tl~gh~~~~~~~~v~sv~fSpdG----~~laS~s~D~~~~ 298 (389)
+++||+++ |++|||||++ + +++.+|++|..+ |++|+|+|++ ++|||+|.|
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~-----V~~v~~sp~~~~~~~~las~s~D---- 237 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-----VRDVAWAPSIGLPTSTIASCSQD---- 237 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC-----EEEEECCCCSSCSCCEEEEEETT----
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc-----eEEEEecCCCCCCCceEEEEcCC----
Confidence 57999999 9999999996 4 478899999987 8999999997 899999875
Q ss_pred cccCCCCCeEEEEeCCCC---e-EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCE
Q 016446 299 QWMEGSAGSINVSSILTG---K-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 374 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg---~-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~ 374 (389)
++|||||+.++ + ....+.+|+ ..|++|+|||||++
T Consensus 238 -------~~v~iw~~~~~~~~~~~~~~~~~~~----------------------------------~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 238 -------GRVFIWTCDDASSNTWSPKLLHKFN----------------------------------DVVWHVSWSITANI 276 (316)
T ss_dssp -------CEEEEEECSSTTCCCCBCCEEEECS----------------------------------SCEEEEEECTTTCC
T ss_pred -------CeEEEEEccCccccchhhhhhhcCC----------------------------------CcEEEEEEcCCCCE
Confidence 99999998762 2 234556676 58999999999999
Q ss_pred EEEecCCCcEEEcc
Q 016446 375 IYTGNRHGLVHVWS 388 (389)
Q Consensus 375 LaSgs~D~tIrlW~ 388 (389)
||+|+.|++||||+
T Consensus 277 las~~~D~~v~lw~ 290 (316)
T 3bg1_A 277 LAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEEESSSCEEEEE
T ss_pred EEEEcCCCeEEEEE
Confidence 99999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=332.02 Aligned_cols=306 Identities=12% Similarity=0.057 Sum_probs=238.8
Q ss_pred ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEe
Q 016446 40 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 119 (389)
Q Consensus 40 ~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~ 119 (389)
..| .+.|.+++|+|+|+.|++ ++.| ..+++|++..++..... .+ ..+...+.+++|+ |+|++|+++
T Consensus 5 ~~~-~~~i~~~~~s~~~~~l~~----~~~d------~~v~i~~~~~~~~~~~~-~~-~~h~~~v~~~~~~-~~~~~l~~~ 70 (372)
T 1k8k_C 5 SFL-VEPISCHAWNKDRTQIAI----CPNN------HEVHIYEKSGNKWVQVH-EL-KEHNGQVTGVDWA-PDSNRIVTC 70 (372)
T ss_dssp ESC-SSCCCEEEECTTSSEEEE----ECSS------SEEEEEEEETTEEEEEE-EE-ECCSSCEEEEEEE-TTTTEEEEE
T ss_pred ccc-CCCeEEEEECCCCCEEEE----EeCC------CEEEEEeCCCCcEEeee-ee-cCCCCcccEEEEe-CCCCEEEEE
Confidence 344 589999999999999998 5567 88999999887521011 11 2355567889998 899999999
Q ss_pred cCCCeEEEEeCCCCeEEEEe----cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe---EEEEE-eecCCceeE
Q 016446 120 AQDSIYKVFDLKNYTMLYSI----SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT---VLKVF-YHLLHRNKK 190 (389)
Q Consensus 120 s~D~tiklWdl~~g~~l~tl----~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~---~l~tl-~~~~~~~~~ 190 (389)
+.|++|++||+.++++...+ +...|.+++|+ ++.+|++++ .|++|++||+.+++ +...+ ..|...+..
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 99999999999999865443 35689999999 688888874 45899999999987 34444 467889999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEC------------------CCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDV------------------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~------------------~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
++|+ |++..+++++.|++|++||+ .+++++..+.+|...|.+++|+|++++|++++ |++|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9998 67889999999999999995 47899999999999999999999999999998 9999
Q ss_pred EEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC--C--eEEEEecCCC
Q 016446 252 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--G--KCLAKINATN 326 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t--g--~~l~tl~gH~ 326 (389)
++||+. ++++.++.+|..+ |.+++|+|||++|++| . |++|++||+.+ | +++.++..++
T Consensus 227 ~i~d~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~-~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 227 CLADADKKMAVATLASETLP-----LLAVTFITESSLVAAG-H-----------DCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp EEEEGGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEE-T-----------TSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred EEEECCCCceeEEEccCCCC-----eEEEEEecCCCEEEEE-e-----------CCeEEEEEccCcCceEEEeeccCccc
Confidence 999996 9999999999876 8999999999999987 4 48999999988 6 4455554443
Q ss_pred CCCCcccccCCCCCCCccccc----cccce-------ecccccccCCEEEEEE-CCCC---CEEEEecCCCcEEEcc
Q 016446 327 CSPKVDDELGSSSTGKSKKLN----KSSYI-------RSTVGEALEDITSLFY-DEER---NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~V~svaf-Spdg---~~LaSgs~D~tIrlW~ 388 (389)
.... . .....+.+ ..... .....+|...|++++| +||| ++|+||+.||+|++|+
T Consensus 290 ~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 290 QSSQ-------R-GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp ---------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cchh-------h-hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 1100 0 00000000 00000 1112366689999984 5888 9999999999999997
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=343.86 Aligned_cols=273 Identities=11% Similarity=0.127 Sum_probs=232.8
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeE
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIY 125 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ti 125 (389)
.+.|+||+++ .||. | .| .+|+|||+.+|++ ..++. +++...|.+|+|+ |||++||+|+.|++|
T Consensus 108 ~~~l~wS~~n-~lAv----g-ld------~tV~lWd~~tg~~---~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v 171 (420)
T 4gga_A 108 LNLVDWSSGN-VLAV----A-LD------NSVYLWSASSGDI---LQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEV 171 (420)
T ss_dssp CBCEEECTTS-EEEE----E-ET------TEEEEEETTTCCE---EEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCE
T ss_pred ceeEEECCCC-EEEE----E-eC------CEEEEEECCCCCE---EEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeE
Confidence 5679999864 6666 2 35 7999999999986 23444 4566678899998 899999999999999
Q ss_pred EEEeCCCCeEEEEecC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCeEE
Q 016446 126 KVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLL 202 (389)
Q Consensus 126 klWdl~~g~~l~tl~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~ 202 (389)
+|||+++++++.++.+ ..|.+++++ +..|+++ +.|+++++||..+ ...+.++.+|...+..+.+. |++..++
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sg---s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l~ 246 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSG---SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLA 246 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEE
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEE---eCCCceeEeeecccceeeEEecccccceeeeeec-CCCCeee
Confidence 9999999999988874 567776664 5677776 4458999999886 45678899999999999997 7789999
Q ss_pred EEeCCCcEEEEECCCCe----EEEEcccCCCceEEEEEcCCC-cEEEE--Ec-CCeEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 203 VKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN-QLFLT--FR-NRTVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 203 ~~s~D~tIklWd~~tg~----~~~~l~gh~~~v~sv~fspdg-~~laS--~s-D~tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
+++.|++|+|||..+++ .++....|...|.+++|+|++ .++++ |+ |++||+||+. |+++..+..|..
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---- 322 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 322 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC----
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc----
Confidence 99999999999999876 366778999999999999965 45555 35 9999999997 999999987754
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|.++.|+|+++.|++++. +.|++|+|||+.+++++.+|.||+
T Consensus 323 --v~~~~~~~~~~~lv~~sg---------~~d~~I~iwd~~~~~~v~~l~gH~--------------------------- 364 (420)
T 4gga_A 323 --VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHT--------------------------- 364 (420)
T ss_dssp --EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCS---------------------------
T ss_pred --eeeeeecCCCCeEEEEEe---------cCCCEEEEEECCCCcEEEEEcCCC---------------------------
Confidence 789999999999999863 357999999999999999999998
Q ss_pred cccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 354 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 354 ~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|||||++|||||.|++|||||.
T Consensus 365 -------~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 365 -------SRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp -------SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -------CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 59999999999999999999999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=348.32 Aligned_cols=282 Identities=10% Similarity=0.085 Sum_probs=238.5
Q ss_pred ceEEEEEEeeCCC-EEEEEEEee------cCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEE
Q 016446 45 EVIRSLFYNKNND-SLITVSVYA------SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 45 ~~v~sv~~spdg~-~l~s~s~~~------~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~La 117 (389)
+.|.+++|||+|+ .|+++...+ +.| ..++||++..++... .+....+...+.+++|+ |||++||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d------~~v~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s-~~~~~l~ 83 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTD------SSLELWSLLAADSEK--PIASLQVDSKFNDLDWS-HNNKIIA 83 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCC------CCCEEEESSSGGGCS--CSCCCCCSSCEEEEEEC-SSSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCC------CeEEEEEccCCCCCc--EEEEEecCCceEEEEEC-CCCCeEE
Confidence 4678899999998 888853333 677 889999998775321 12222344557789998 8999999
Q ss_pred EecCCCeEEEEeCCC----CeEEEEec--CCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCCe------EEEE---
Q 016446 118 YSAQDSIYKVFDLKN----YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT------VLKV--- 180 (389)
Q Consensus 118 s~s~D~tiklWdl~~----g~~l~tl~--~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG~------~l~t--- 180 (389)
+++.|++|+|||+.+ .+++.++. ...|.+++|+| +.+|+++ +.|++|++||+.+++ ....
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG---GNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE---CSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE---cCCCeEEEEECCCCcccccccccccccc
Confidence 999999999999987 34777775 46899999994 6788776 456899999999987 3333
Q ss_pred EeecCCceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEEcccC------CCceEEEEEcCCC-cEEEEEc-CC--
Q 016446 181 FYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-QLFLTFR-NR-- 249 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~-~~~l~~~s~D~tIklWd~~tg~~~~~l~gh------~~~v~sv~fspdg-~~laS~s-D~-- 249 (389)
+..|...+..++|+ |+ +..+++++.|++|++||+++++++..+..| ...|.+++|+|++ ++|++++ |+
T Consensus 161 ~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 161 SMSSVDEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SCCSSCCCCEEEEC-SSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred ccCCCCCeeEEEeC-CCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 36788899999998 55 677888899999999999999999998877 7899999999997 6899998 88
Q ss_pred -eEEEEeCC-C-cEEEEec-cCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 250 -TVAVWNFR-G-ELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 250 -tIklWd~~-G-~~l~tl~-gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+|++||++ + +++.++. +|... |.+++|+| ||++|++++.| ++|+|||+.+++++.++.+
T Consensus 240 ~~i~~~d~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~d-----------g~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQTLNQGHQKG-----ILSLDWCHQDEHLLLSSGRD-----------NTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp CCCCEEETTSTTSCSBCCCSCCSSC-----EEEEEECSSCSSCEEEEESS-----------SEEEEECSSSCCEEEEEEC
T ss_pred ceEEEEeCCCCCCCcEEeecCccCc-----eeEEEeCCCCCCeEEEEeCC-----------CCEEEeeCCCCccceeecC
Confidence 99999996 5 6888898 89876 89999999 99999999875 9999999999999999999
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC-CEEEEecCCCcEEEccC
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg-~~LaSgs~D~tIrlW~~ 389 (389)
|. ..|++++|+||| ++||+++.|++|++|+.
T Consensus 304 ~~----------------------------------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 304 RG----------------------------------NWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp SS----------------------------------SCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CC----------------------------------CceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 98 589999999999 89999999999999984
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-43 Score=336.64 Aligned_cols=307 Identities=12% Similarity=0.166 Sum_probs=250.0
Q ss_pred ecCceEEEEecccceeeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe--
Q 016446 20 AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-- 96 (389)
Q Consensus 20 ~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-- 96 (389)
+.++++++|+.++++....+.+|. +.|.+++|+| +|+.||+ ++.| ..+++|++..++.........
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~~----~~~d------g~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERIHG-GGINTLDIEPVEGRYMLS----GGSD------GVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCCCS-SCEEEEEECTTTCCEEEE----EETT------SCEEEEECCCCSSSSCEEECEEE
T ss_pred eccCcceeeccccCcceeeeeccC-CcEEEEEEecCCCCEEEE----EcCC------CeEEEEECCCCcccceEeccccc
Confidence 346788999999999999998864 9999999999 9999999 4567 789999998887633221100
Q ss_pred -------eecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC----CceEEEEecCCC
Q 016446 97 -------SESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP----GIMLLIFNRSSS 163 (389)
Q Consensus 97 -------~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~----g~~la~~~~~s~ 163 (389)
..+...+.+++|+ | ++++|++++.|++|++||+.+++++..+. ...+.+++|+| +.++++++ .
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 164 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWY-PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT---R 164 (408)
T ss_dssp EECTTCTTCCSSCEEEEEEC-TTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE---S
T ss_pred cccccccccCCCcEEEEEEc-cCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc---C
Confidence 1255567889998 6 88899999999999999999999988876 57899999994 33777764 4
Q ss_pred CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCe-EEEEeCCCcEEEEECCCCe-EEEEc---------------cc
Q 016446 164 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAE-LMEVS---------------RT 226 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~-l~~~s~D~tIklWd~~tg~-~~~~l---------------~g 226 (389)
|+.|++||+.+++++.++..|...+..++|+ |++.. +++++.|++|++||+++++ ++..+ .+
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 5799999999999999999999999999998 66664 7788999999999999876 55555 68
Q ss_pred CCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCe-eEEEECCCCCEEEEEecCCCcccccCC
Q 016446 227 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT-NNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v-~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
|...|.+++|+|+|++|++++ |++|++||+. ++.+..+.++........+ ..+...+.+.+++ ++.
T Consensus 244 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------- 312 (408)
T 4a11_B 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VPY---------- 312 (408)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EEE----------
T ss_pred ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Eec----------
Confidence 999999999999999999998 9999999997 8876666554322111111 2333333444444 444
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 383 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t 383 (389)
|++|++||+.+++++.++.+|. ..|++++|+|||+.||+|+.||+
T Consensus 313 -~~~i~v~d~~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 313 -GSTIAVYTVYSGEQITMLKGHY----------------------------------KTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp -TTEEEEEETTTCCEEEEECCCS----------------------------------SCEEEEEEETTTTEEEEEETTSC
T ss_pred -CCEEEEEECcCCcceeeeccCC----------------------------------CeEEEEEEcCCCCEEEEECCCCe
Confidence 4899999999999999999998 58999999999999999999999
Q ss_pred EEEcc
Q 016446 384 VHVWS 388 (389)
Q Consensus 384 IrlW~ 388 (389)
|++|+
T Consensus 358 i~iw~ 362 (408)
T 4a11_B 358 ILAWV 362 (408)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99998
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=342.15 Aligned_cols=272 Identities=10% Similarity=0.088 Sum_probs=227.1
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEE
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 126 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tik 126 (389)
+.+++|+|+|+.|++++ .| ..+++|++.+++.... +.. + ..+...+|+ |+|++||+|+.|++|+
T Consensus 59 ~~~~~~s~~g~~l~~~~----~d------~~v~i~d~~~~~~~~~--~~~--~-~~~~~~~~~-~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKAR----LD------GHDFLFNTIIRDGSKM--LKR--A-DYTAVDTAK-LQMRRFILGTTEGDIK 122 (420)
T ss_dssp CTTCEEEEEETTEEEEE----ET------TEEEEEECCSEETTTT--SCS--C-CEEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred ccceeeeecCCeEEEEE----cC------CcEEEEEecccceeeE--Eec--C-CceEEEEEe-cCCCEEEEEECCCCEE
Confidence 45899999999999954 56 7899999987765221 111 1 112235676 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 127 VFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 127 lWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
|||+.+++++..+. ...|.+++|+ ++.+||+++ .|++|++||+.++++++++.+|...+..++|+ |++..+++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s 198 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS---QDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNVLS 198 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEe---CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEEEE
Confidence 99999999988874 5789999999 578888774 45899999999999999999999999999998 78899999
Q ss_pred EeCCCcEEEEECCCCeEEEEccc---CCCceEEE---------------------EEcCCCcEEEEEc-CCeEEEEeCC-
Q 016446 204 KQENENLQILDVRNAELMEVSRT---EFMTPSAF---------------------IFLYENQLFLTFR-NRTVAVWNFR- 257 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~~~~l~g---h~~~v~sv---------------------~fspdg~~laS~s-D~tIklWd~~- 257 (389)
++.|++|++||+++++++..+.. |...|.++ +|+|+|++|++++ |++|++||+.
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999999999875 44445544 4579999999998 9999999996
Q ss_pred CcEEEEec-cCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCCCCcccc
Q 016446 258 GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDE 334 (389)
Q Consensus 258 G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~~~~~~~ 334 (389)
++.+..+. +|... |.+++|+|+|+ +|++|+.| |+|++||+.++++ +.++.+|..
T Consensus 279 ~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~~------- 335 (420)
T 3vl1_A 279 KEQTIQLPSKFTCS-----CNSLTVDGNNANYIYAGYEN-----------GMLAQWDLRSPECPVGEFLINEG------- 335 (420)
T ss_dssp CCEEEEECCTTSSC-----EEEEEECSSCTTEEEEEETT-----------SEEEEEETTCTTSCSEEEEESTT-------
T ss_pred CceeEEcccccCCC-----ceeEEEeCCCCCEEEEEeCC-----------CeEEEEEcCCCcCchhhhhccCC-------
Confidence 88776665 46655 89999999999 99999865 9999999999865 888988652
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|+++.| |+|++|++|+.|++|++|+
T Consensus 336 --------------------------~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 336 --------------------------TPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp --------------------------SCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred --------------------------CCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 57888854 6889999999999999998
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=340.79 Aligned_cols=279 Identities=12% Similarity=0.145 Sum_probs=218.4
Q ss_pred cEEEEEee--ccEEEEEecCc-------eEEEEecccceee----------eeeecCCcceEEEEEEeeCCCEEEEEEEe
Q 016446 5 KVIEIVAA--RDIVFALAHSG-------VCAAFSRETNRRI----------CFLNVSPDEVIRSLFYNKNNDSLITVSVY 65 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~g-------tiklW~~~tg~~l----------~tl~~~~~~~v~sv~~spdg~~l~s~s~~ 65 (389)
.|+++.|+ +++||+++.+. .|++|+.+.+... .+|.++ .+.|.++++ +++.++++..+
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~-~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN-DDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT-SCCCCEEEE--ETTEEEEECCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC-CCceEEEEe--CCCEEEEEECC
Confidence 59999999 88999987543 5999998654321 245665 478888765 55777774322
Q ss_pred -------ecCCCcceeeeeeeEeEeccCCCCCcceeEe------eecccCceeEEEecCCCeEEE--EecCCCeEEEEeC
Q 016446 66 -------ASDNFSSLKCRSTKIEYIRRGKPDSGFALFE------SESLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDL 130 (389)
Q Consensus 66 -------~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~------~~~~~~~~~v~Fs~pdG~~La--s~s~D~tiklWdl 130 (389)
++.| ..+++|++..++.. ...+-. ...-.++..|+|| |||++|| |++.|++|||||+
T Consensus 93 ~~~~l~s~~~d------~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 93 NSTKITQGKGN------KHLRKFKYDKVNDQ-LEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp CHHHHHHTSCC------CCEEEEEEETTTTE-EEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEET
T ss_pred CccEEEEecCC------CcEEEEEecCCCce-EEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeEC
Confidence 2234 67888888665431 000100 1122346679998 9999875 5668999999999
Q ss_pred CCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE--eecCCceeEEEEEecCCCeEEEEeC
Q 016446 131 KNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 131 ~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl--~~~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
+++++++++. ...|.+|+|| +|++||+++ +.++++|+..+|+++... .+|...+..|+|+ |++..+++++.
T Consensus 165 ~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~ 239 (365)
T 4h5i_A 165 SDLTEKFEIETRGEVKDLHFSTDGKVVAYIT----GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIAASL 239 (365)
T ss_dssp TTTEEEEEEECSSCCCEEEECTTSSEEEEEC----SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCCcEEEEeCCCCceEEEEEccCCceEEecc----ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEEEec
Confidence 9999998886 5789999999 588887763 246888888899887654 4677889999999 77888998887
Q ss_pred CC----cEEEEECCCCeE----EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE-eccCcCCcCCCC
Q 016446 207 NE----NLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLLWHPDCN 275 (389)
Q Consensus 207 D~----tIklWd~~tg~~----~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t-l~gh~~~~~~~~ 275 (389)
|+ ++++||+..+.. ...+.+|...|++++|||||++||+|+ |++|+|||++ |+++++ +++|..+
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~----- 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA----- 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC-----
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC-----
Confidence 76 799999987764 456789999999999999999999999 9999999996 999988 5899987
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
|++|+|||||++|||||.| +||||||+.+
T Consensus 315 V~~v~fSpdg~~laS~S~D-----------~tvrvw~ip~ 343 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAA-----------NTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETT-----------SEEEEEECCT
T ss_pred EEEEEECCCCCEEEEEeCC-----------CeEEEEEcCC
Confidence 8999999999999999875 9999999964
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=369.22 Aligned_cols=265 Identities=11% Similarity=0.056 Sum_probs=208.0
Q ss_pred cceeeeeeecCCcceEEEEEEeeCC---------CEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccC
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNN---------DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg---------~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~ 102 (389)
++++..+++. ...|++|+|+|++ ++||+++. .+ +.
T Consensus 123 ~~r~~~~~~~--~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~---~~----------------~~--------------- 166 (524)
T 2j04_B 123 GKRRGFIYNV--GGLVTDIAWLNIEENTDIGKDIQYLAVAVS---QY----------------MD--------------- 166 (524)
T ss_dssp CCSCEEEEEC--CC--CCCSCEEECCCCSSCSSEEEEEEEEE---C----------------------------------
T ss_pred CCcceEEEEC--CCceeEEEecccCCCCccCcCCeEEEEEEe---cc----------------cC---------------
Confidence 4667667773 3799999999998 78888542 11 00
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE----EEec--CCcEEEEEEcC-------CceEEEEecCCCCeeEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSIS--DKHVQEIKISP-------GIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l----~tl~--~~~V~~vafS~-------g~~la~~~~~s~d~tikl 169 (389)
.+++ |++++|||++.|++|||||+.++++. .++. ...|++|+|+| +++||+++ .|++|||
T Consensus 167 ---~~~~-~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s---~Dgtvrl 239 (524)
T 2j04_B 167 ---EPLN-EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS---QEGTINF 239 (524)
T ss_dssp -------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE---TTSCEEE
T ss_pred ---Cccc-hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe---cCCeEEE
Confidence 0134 89999999999999999999887742 3343 46899999996 36888764 4689999
Q ss_pred EEcCCCeE-----------EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEEcccCCCceEEE--E
Q 016446 170 LSIEDGTV-----------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAF--I 235 (389)
Q Consensus 170 Wd~~tG~~-----------l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~-~~~~l~gh~~~v~sv--~ 235 (389)
||+.++++ ..++.+|...+.+|+|++ ++.|++|+.|++|+|||+++++ +..++.+|...|.+| +
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA 317 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence 99988753 247888999999999973 4689999999999999999875 456789999999999 6
Q ss_pred EcCCC-cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 236 FLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 236 fspdg-~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
|+|+| ++|||++ |++|||||++ ++++.++.+|.... .|++|+|||||+.||+++.| ++|||||
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~---~v~~v~fsp~~~~l~s~~~d-----------~tv~lwd 383 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS---NLVPVVYCPQIYSYIYSDGA-----------SSLRAVP 383 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC---SCCCEEEETTTTEEEEECSS-----------SEEEEEE
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC---cccceEeCCCcCeEEEeCCC-----------CcEEEEE
Confidence 79998 9999999 9999999996 89988999887421 26899999999999998764 8999999
Q ss_pred CCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 313 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 313 ~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+.+++|+.+|.+|. ..|++|+|||||++|||||.|++|||||.
T Consensus 384 ~~~~~~~~~l~gH~----------------------------------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 384 SRAAFAVHPLVSRE----------------------------------TTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp TTCTTCCEEEEECS----------------------------------SCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred CcccccceeeecCC----------------------------------CceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 99999999999998 59999999999999999999999999983
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=327.54 Aligned_cols=284 Identities=10% Similarity=0.051 Sum_probs=240.1
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEecccce------eeeeeecCCcceEEEEEEeeC----C---CEEEEEEEeecCC
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKN----N---DSLITVSVYASDN 69 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~------~l~tl~~~~~~~v~sv~~spd----g---~~l~s~s~~~~~d 69 (389)
+..|..|.|+.++||+++.||+|++|+.++++ ++.++.+|. ..|.+++|+|+ | +.|+++ +.|
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~g~~~~~l~s~----~~d 90 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-SGLHHVDVLQAIERDAFELCLVATT----SFS 90 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-TCEEEEEEEEEEETTTEEEEEEEEE----ETT
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC-CcEEEEEEecccccCCccccEEEEE----cCC
Confidence 46899999999999999999999999999888 788999875 89999999999 9 999984 467
Q ss_pred CcceeeeeeeEeEeccCCCCCcceeEe-eec-----ccCceeEEEec---CCCeE-EEEecCCCeEEEEeCCC------C
Q 016446 70 FSSLKCRSTKIEYIRRGKPDSGFALFE-SES-----LKWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------Y 133 (389)
Q Consensus 70 ~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~-----~~~~~~v~Fs~---pdG~~-Las~s~D~tiklWdl~~------g 133 (389)
..+++|++..++......+.. ..+ ...+.+++|++ |+|++ |++++.|++|++||+.+ +
T Consensus 91 ------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 91 ------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp ------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred ------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 789999998887411111111 123 25678899962 68999 99999999999999988 6
Q ss_pred eEEE-----Ee---------cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEee---c---CCceeEEEE
Q 016446 134 TMLY-----SI---------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---L---LHRNKKVDF 193 (389)
Q Consensus 134 ~~l~-----tl---------~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~---~---~~~~~~v~f 193 (389)
+++. ++ +...|.+++|+|..+|+++ +.|++|++||+.+++++.++.. | ...+..++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG---FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE---CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEE---eCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 6555 55 3568999999953377765 4568999999999999999998 8 899999999
Q ss_pred EecCCCeEEEEeCC---CcEEEEECCCCeEEEEccc-------------CCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 194 IEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 194 ~~~~~~~l~~~s~D---~tIklWd~~tg~~~~~l~g-------------h~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
+ |++..+++++.| ++|++||+++++++..+.+ |...|.+++|+|++++|++++ |++|++||+
T Consensus 242 ~-~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 242 S-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp C-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred C-CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 8 778899999999 9999999999999999999 999999999999999999999 999999999
Q ss_pred C-CcEEEEec------cC---------------cCCcCCCCeeEEEECCCC----------CEEEEEecCCCcccccCCC
Q 016446 257 R-GELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 257 ~-G~~l~tl~------gh---------------~~~~~~~~v~sv~fSpdG----------~~laS~s~D~~~~~~~~s~ 304 (389)
. ++++.++. +| ... |.+++|+||| ++|++++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~~g~~~~~~~~~~~~l~s~~~d---------- 385 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLKKGWRSGMGADLNESLCCVCLD---------- 385 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEECTTTSBSTTCTTSCEEEEEETT----------
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEeccccccccccccccceEEEecCC----------
Confidence 6 99999999 77 655 8999999999 799999865
Q ss_pred CCeEEEEeCCCCe
Q 016446 305 AGSINVSSILTGK 317 (389)
Q Consensus 305 D~tIklWd~~tg~ 317 (389)
|+|+|||+.+|+
T Consensus 386 -g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 -RSIRWFREAGGK 397 (397)
T ss_dssp -TEEEEEEEEC--
T ss_pred -CcEEEEEcCCCC
Confidence 999999998875
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=339.61 Aligned_cols=308 Identities=11% Similarity=0.055 Sum_probs=221.5
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC--CCCCcceeEeeecccCceeEEEecCCCeEEEEecC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g--~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
.+.|++++|+|||+.||+ ++.| ..++||++..+ ++. ..+ ..+...+.+++|+ |+|++||+++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~----~~~d------~~i~iw~~~~~~~~~~--~~~--~~h~~~v~~~~~s-~~~~~l~s~s~ 75 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVT----TTAT------NQVELYEQDGNGWKHA--RTF--SDHDKIVTCVDWA-PKSNRIVTCSQ 75 (377)
T ss_dssp SSCCSCCEECSSSSEEEC----CCSS------SCBCEEEEETTEEEEC--CCB--CCCSSCEEEEEEC-TTTCCEEEEET
T ss_pred CCcEEEEEECCCCCEEEE----ecCC------CEEEEEEccCCceEEE--EEE--ecCCceEEEEEEe-CCCCEEEEEeC
Confidence 378999999999999998 5677 78999999877 331 112 1345567889998 89999999999
Q ss_pred CCeEEEEeCCCCe---EEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe---EEEEEee-cCCceeEE
Q 016446 122 DSIYKVFDLKNYT---MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYH-LLHRNKKV 191 (389)
Q Consensus 122 D~tiklWdl~~g~---~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~-~~~~~~~v 191 (389)
|++|+|||+.+++ +...+. ...|.+++|+ ++.+|++++ .|++|++||+.+++ +++.+.. |...+..+
T Consensus 76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999999887 556554 5689999999 588888874 45899999999988 4888987 99999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECC------------------CCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVR------------------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~------------------tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
+|+ |++..+++++.|++|++||+. +++++..+ +|...|.+++|+|+|++|++++ |++|+
T Consensus 153 ~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 153 DWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVT 230 (377)
T ss_dssp EEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC
T ss_pred EEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEE
Confidence 998 678899999999999999995 57788888 9999999999999999999998 99999
Q ss_pred EEeCC-CcE----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-C-eEEEEecCC
Q 016446 253 VWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-G-KCLAKINAT 325 (389)
Q Consensus 253 lWd~~-G~~----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g-~~l~tl~gH 325 (389)
|||+. +++ +.++.+|..+ |.+++|+|||++|++|+.| +.+ +|+... + ++...+...
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLP-----LRSLLWANESAIVAAGYNY-----------SPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSC-----EEEEEEEETTEEEEEESSS-----------SEE-EECCCC---CCSBCCCSC
T ss_pred EEECCCCCCcceeeEeecCCCCc-----eEEEEEcCCCCEEEEEcCC-----------cEE-EEEeCCCceEEEeeeccc
Confidence 99997 877 8899999887 8999999999999998643 555 676553 2 223333322
Q ss_pred CCCCCcccccCCCCCC-----Cc------cccccc------cceecccccccCCEEEEEECCCC-C---EEEEecCCCcE
Q 016446 326 NCSPKVDDELGSSSTG-----KS------KKLNKS------SYIRSTVGEALEDITSLFYDEER-N---EIYTGNRHGLV 384 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~-----~~------~~~~~~------~~~~~~~~~~~~~V~svafSpdg-~---~LaSgs~D~tI 384 (389)
..... ....+.+..+ +. ..+... .........|...|++|++.|+. . .|+||+.||+|
T Consensus 294 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i 372 (377)
T 3dwl_C 294 TSKTS-FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV 372 (377)
T ss_dssp CCCCC-BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEE
T ss_pred ccccc-cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcE
Confidence 11000 0000000000 00 000000 01111223366899999966554 3 69999999999
Q ss_pred EEccC
Q 016446 385 HVWSN 389 (389)
Q Consensus 385 rlW~~ 389 (389)
||||.
T Consensus 373 ~iWdl 377 (377)
T 3dwl_C 373 VLWTL 377 (377)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=364.51 Aligned_cols=303 Identities=10% Similarity=0.019 Sum_probs=231.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
..+|.+|.++ |+++|+++.|+||| +.+++ +++++| ...|++|+|+|||. + +.+++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh-~~~v~~V~FsPdg~-----------~------~~~~~ 71 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCN-SKNLFHVKEFPLEF-----------E------NKLDF 71 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSB-GGGTEEEEEECCCC-----------C------CTTTT
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCC-CccEEEEEECCCCC-----------c------ceEEE
Confidence 3578899999 99999999999999 64444 455665 58999999999991 1 33334
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CC-----cEEEEEEc-CCc
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK-----HVQEIKIS-PGI 153 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~-----~V~~vafS-~g~ 153 (389)
|+.. |.. +++..+...+.+|+|| |||++||+++.||+|+|||.++ ++.++. .. .|.+|+|| +|+
T Consensus 72 ~~~~-~~~-----~~~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 72 ELAQ-QNG-----LLNSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp SCCC-SSC-----SSTTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSS
T ss_pred EeCC-Cce-----EeecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCC
Confidence 4422 222 2221234567899998 9999999999999999999644 665554 22 49999999 699
Q ss_pred eEEEEecCCCCeeEEEEEcCCCe-------EEEEE----eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGT-------VLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-- 220 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~-------~l~tl----~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-- 220 (389)
+||+++ .|++|||||+.+|+ .++++ .+|...|.+|+|+ |++ +++++.|++||+||+.++++
T Consensus 143 ~LAsgs---~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 143 SIVVGN---EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp CEEEEE---TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred EEEEEc---CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCCcccc
Confidence 999874 46899999999986 47888 5677899999999 655 88899999999999998884
Q ss_pred -EEEc-ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCCcEEEEec-cCcCCcCCCCeeEEEE--CCCCCEEEEEecCC
Q 016446 221 -MEVS-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI--TSDQDLIISYCKAE 295 (389)
Q Consensus 221 -~~~l-~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G~~l~tl~-gh~~~~~~~~v~sv~f--SpdG~~laS~s~D~ 295 (389)
.+++ .+|...|.+|+|+ |+.||+++|++|||||+.+..+.++. ||... |++|+| ||||+.|+++++
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-----V~~va~~~s~d~~~La~a~e-- 287 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-----FHIIPLNHEKESTILLMSNK-- 287 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-----CCEEEETTCSSCEEEEECSS--
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-----EEEEEeeeCCCCCEEEEEcC--
Confidence 4667 5899999999999 68999999999999999855554444 89887 799999 999999999865
Q ss_pred CcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccc------cCCEEEEEEC
Q 016446 296 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA------LEDITSLFYD 369 (389)
Q Consensus 296 ~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~V~svafS 369 (389)
||+ |||... .++ +... +.. ....+++.++|+..++. ...|++|+||
T Consensus 288 ---------dG~-klw~~d---~~~-~spd------------~~l--~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~S 339 (588)
T 2j04_A 288 ---------TSY-KVLLED---ELH-VTAD------------NII--APYLEKKFKKWSTIWNEFNNYETTLVIHGISLS 339 (588)
T ss_dssp ---------CEE-EEEESS---SEE-EECC------------CSS--HHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEEC
T ss_pred ---------CCC-EEEeec---cEE-ECCC------------ceE--EEEcCCEEEEEECCCCceeeeccceEEEEEEEC
Confidence 499 999976 122 2221 111 11124444555443222 2369999999
Q ss_pred CCCCEEEEecC
Q 016446 370 EERNEIYTGNR 380 (389)
Q Consensus 370 pdg~~LaSgs~ 380 (389)
|||++||++++
T Consensus 340 PdG~~lA~~~~ 350 (588)
T 2j04_A 340 PDGYSIAIVYD 350 (588)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999984
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=316.64 Aligned_cols=284 Identities=11% Similarity=0.074 Sum_probs=246.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|..|.|+ +++||+++.||+|++|+..+++++.++.+|. ..|.+++|+|+|+.|+++ +.| ..+++
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~----~~d------g~i~i 100 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT-GTIWSIDVDCFTKYCVTG----SAD------YSIKL 100 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEE----ETT------TEEEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC-CcEEEEEEcCCCCEEEEE----eCC------CeEEE
Confidence 4679999998 8899999999999999999999999999875 899999999999999994 467 78999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC-----CeEEEEeCCCCeE-----------EEEe--cCC
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTM-----------LYSI--SDK 142 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D-----~tiklWdl~~g~~-----------l~tl--~~~ 142 (389)
|++.++++ +....+...+..++|+ |+|++|++++.+ ++|++||+.+++. +..+ +..
T Consensus 101 wd~~~~~~-----~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQC-----VATWKSPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EETTTCCE-----EEEEECSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EECCCCcE-----EEEeecCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 99998886 2222345567789998 899999999999 9999999876542 1122 122
Q ss_pred --cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC-CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 016446 143 --HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 143 --~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t-G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg 218 (389)
.|.+++|+ ++..|++++ .|++|++||+.+ ++++.++..|...+..++|+ |++..+++++.|++|++||++++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGH---KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEE---TTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred ccceeEEEEcCCCCEEEEEc---CCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCC
Confidence 89999999 578888764 458999999999 89999999999999999998 78889999999999999999999
Q ss_pred eEEEEcccCCCceEEEEEcCCCcEEEEEc-CC--------------eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEEC
Q 016446 219 ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--------------TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 282 (389)
Q Consensus 219 ~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~--------------tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fS 282 (389)
+++..+. |...+..++|+|+++++++++ ++ .|++||.. ++++.++.+|... |.+++|+
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~s 324 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----LNTVAIS 324 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----EEEEEEC
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----EEEEEEC
Confidence 9999887 778999999999999999998 77 89999996 9999999999877 8999999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|||++||+++.| |+|+|||+.++.....+..
T Consensus 325 ~~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~ 355 (369)
T 3zwl_B 325 PQGTSYASGGED-----------GFIRLHHFEKSYFDFKYDV 355 (369)
T ss_dssp TTSSEEEEEETT-----------SEEEEEEECHHHHTCCCHH
T ss_pred CCCCEEEEEcCC-----------CeEEEEECccccchhHHHH
Confidence 999999999875 9999999988776555443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=351.77 Aligned_cols=279 Identities=11% Similarity=0.120 Sum_probs=232.6
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEeccc-----ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 74 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~t-----g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~ 74 (389)
+..|..|.|+ +++||+++.||+||+|++.+ +.+.+.+.+|. ..|.+|+|+|+|+.|++ ++.|
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~~g~~l~s----gs~D----- 451 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-HFVEDVVLSSDGQFALS----GSWD----- 451 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-SCEEEEEECTTSSEEEE----EETT-----
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-CcEEEEEECCCCCEEEE----EeCC-----
Confidence 4568999988 47999999999999999865 45677888875 89999999999999999 4577
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe------cCCcEEEEE
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIK 148 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl------~~~~V~~va 148 (389)
..++|||+.+|+.. ..+ ..|...+.+++|+ |+|++|+|||.|++|||||+.. .+..++ |...|.+++
T Consensus 452 -g~v~vwd~~~~~~~--~~~--~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 452 -GELRLWDLAAGVST--RRF--VGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp -SEEEEEETTTTEEE--EEE--ECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEE
T ss_pred -CcEEEEECCCCcce--eEE--eCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEE
Confidence 89999999888751 222 2455667889998 8999999999999999999854 444444 235799999
Q ss_pred EcCC---ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc
Q 016446 149 ISPG---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 149 fS~g---~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~ 225 (389)
|+|+ ..|+++ +.|++||+||+.+++++.++.+|.+.+.+++|+ |++..+++++.|++|+|||+++++++..+.
T Consensus 525 ~~~~~~~~~l~s~---s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 525 FSPNTLQPTIVSA---SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp ECSCSSSCEEEEE---ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EeCCCCcceEEEE---eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 9963 467776 456899999999999999999999999999998 788999999999999999999999999887
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCc--------------CCCCeeEEEECCCCCEEEE
Q 016446 226 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH--------------PDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~--------------~~~~v~sv~fSpdG~~laS 290 (389)
.+ ..|.+++|+|++.+|++++|+.|+|||++ ++++.++..|.... ....+.+++|||||++|+|
T Consensus 601 ~~-~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 601 AN-SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred CC-CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 65 57999999999999998889999999997 88988887543210 0012689999999999999
Q ss_pred EecCCCcccccCCCCCeEEEEeCC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
||.| |+|||||+.
T Consensus 680 gs~D-----------g~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTD-----------GVIRVWGIG 692 (694)
T ss_dssp EETT-----------SEEEEEEC-
T ss_pred EcCC-----------CeEEEEecc
Confidence 9875 999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=313.76 Aligned_cols=274 Identities=11% Similarity=0.083 Sum_probs=226.1
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
.+.|.+++|+|||+.|+.+. .+ ..+.+|..... ...+....+...+.+++|+ |+|++|++++ |+
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~----~~------~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~-dg 72 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPF----PP------DALIGPGIPRH----ARQINTLNHGEVVCAVTIS-NPTRHVYTGG-KG 72 (337)
T ss_dssp EEECCEEEECSSSCEEECCC----CT------TSSSSTTCCSE----EEEEEEECCSSCCCEEEEC-SSSSEEEEEC-BS
T ss_pred CCceeEEEECCCCCEEEeec----CC------CcEeccccCCc----cccceeccCCCceEEEEEe-cCCcEEEEcC-CC
Confidence 36899999999999988742 22 11122221111 1112223455667889998 8999999999 99
Q ss_pred eEEEEeCCCCeE---EEEe----cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe--EEEEEeecCCceeEEEE
Q 016446 124 IYKVFDLKNYTM---LYSI----SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 124 tiklWdl~~g~~---l~tl----~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~--~l~tl~~~~~~~~~v~f 193 (389)
+|++||+.+++. +..+ +...|.+++|+ ++.+|++++ .|++|++||+.+++ +...+..|...+..++|
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999987653 3333 34689999999 577888764 45899999999988 77788888899999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCc
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 271 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~ 271 (389)
+ |++..+++++.|++|++||+++++++..+.+|...|.+++|+|++++|++++ |++|++||++ ++++..+. |...
T Consensus 150 ~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~- 226 (337)
T 1gxr_A 150 S-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ- 226 (337)
T ss_dssp C-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC-
T ss_pred C-CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCc-
Confidence 8 6788999999999999999999999999999999999999999999999998 9999999997 88888875 4444
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 351 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
+.+++|+|||++|++++.| ++|++||+.+++.. .+.+|.
T Consensus 227 ----v~~~~~s~~~~~l~~~~~~-----------~~i~~~~~~~~~~~-~~~~~~------------------------- 265 (337)
T 1gxr_A 227 ----IFSLGYCPTGEWLAVGMES-----------SNVEVLHVNKPDKY-QLHLHE------------------------- 265 (337)
T ss_dssp ----EEEEEECTTSSEEEEEETT-----------SCEEEEETTSSCEE-EECCCS-------------------------
T ss_pred ----eEEEEECCCCCEEEEEcCC-----------CcEEEEECCCCCeE-EEcCCc-------------------------
Confidence 7999999999999998765 89999999988764 677887
Q ss_pred eecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 352 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 352 ~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+++|+|||+.|++++.|++|++|+.
T Consensus 266 ---------~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 266 ---------SCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp ---------SCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ---------cceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 58999999999999999999999999983
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=325.59 Aligned_cols=303 Identities=10% Similarity=0.057 Sum_probs=215.2
Q ss_pred EEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeE
Q 016446 27 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 106 (389)
Q Consensus 27 lW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v 106 (389)
||++.+.+++.+++.|. +.|++|+|||||+.||+ ++++ .++||++..++. .+.. ....+..+
T Consensus 3 i~s~~~~~~~~~~~~h~-~~V~~v~fs~dg~~la~----g~~~-------~~~iw~~~~~~~-----~~~~-~~~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS-NPVTDYEFNQDQSCLIL----STLK-------SFEIYNVHPVAH-----IMSQ-EMRHLSKV 64 (355)
T ss_dssp ----------------C-CCCCEEEECTTSSEEEE----ECSS-------EEEEEEETTEEE-----EEEE-ECSCCCEE
T ss_pred cccccccCCccccccCC-CceEEEEECCCCCEEEE----EcCC-------EEEEEecCCcce-----eeee-ecCCeEEE
Confidence 57777888998888874 89999999999999988 4555 357899876654 2221 22246678
Q ss_pred EEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCC-eEEEEEee
Q 016446 107 EFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYH 183 (389)
Q Consensus 107 ~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~ 183 (389)
+|+ ++++++ ++++.|++|+|||+.+++++.++. ...|.+++|++...+++. |++|++||+.++ ++++++..
T Consensus 65 ~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 65 RML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-----GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEC-TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-----TTEEEEEESSTTCCBSSCCEE
T ss_pred EEc-CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-----cCEEEEEECCCCceeeEEecc
Confidence 997 677776 567889999999999999998886 568999999976655432 368999999999 88887774
Q ss_pred cCCceeEEEEEecCCCeEEEE--eCCCcEEEEECCCCe----------------EEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAE----------------LMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~--s~D~tIklWd~~tg~----------------~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
....++++ + ..++++ +.|++|+|||+.+++ +++++.+|...|.+++|+|||++|||
T Consensus 139 ---~~~~~~~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 44455555 3 677764 699999999999876 37889999999999999999999999
Q ss_pred Ec-CCe-EEEEeCC-CcEEEEec-c-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE--
Q 016446 246 FR-NRT-VAVWNFR-GELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-- 318 (389)
Q Consensus 246 ~s-D~t-IklWd~~-G~~l~tl~-g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-- 318 (389)
++ |++ |||||++ |+++.+|+ | |... |.+++|||||++||+++.| ++|+|||+.++..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~-----v~~~~~s~~~~~l~s~s~d-----------~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRAD-----VVDMKWSTDGSKLAVVSDK-----------WTLHVFEIFNDQDNK 276 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSC-----EEEEEECTTSCEEEEEETT-----------CEEEEEESSCCSCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCc-----EEEEEECCCCCEEEEEECC-----------CEEEEEEccCCCCcc
Confidence 99 999 9999997 99999998 6 8776 8999999999999999875 9999999986532
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
...+.++-. + ..+. ..|.... .....+....+..++|+|||+.|++++.||++++|+
T Consensus 277 ~~~~~~~~~-~---~~~~--------~~~~~~~-~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 277 RHALKGWIN-M---KYFQ--------SEWSLCN-FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEETTTTEE-C---CCCC--------CSSCSEE-EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccccceee-c---cccc--------cccceeE-EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 222222100 0 0000 0000000 000011112346699999999999999999999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=322.26 Aligned_cols=276 Identities=13% Similarity=0.132 Sum_probs=233.2
Q ss_pred cccEEEEEee------ccEEEEEecCceEEEEecccceeeeeeecC----CcceEEEEEEeeC----CCEEEEEEEeecC
Q 016446 3 RTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKN----NDSLITVSVYASD 68 (389)
Q Consensus 3 ~~~v~~i~~~------~~~~a~~~~~gtiklW~~~tg~~l~tl~~~----~~~~v~sv~~spd----g~~l~s~s~~~~~ 68 (389)
...|..|.|+ ...+++++.++.|++|+..+++.++.+..+ +.+.|.+++|+|+ |+.|++ ++.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~----~~~ 93 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV----AGS 93 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE----EET
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE----ecC
Confidence 4689999998 456777777889999999999988888754 3367999999999 668888 457
Q ss_pred CCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEe-----cCC
Q 016446 69 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDK 142 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl-----~~~ 142 (389)
| ..+++|++.++++. . .+ ..+...+.+++|+ | ++++|++++.|++|++||+.+++++..+ +..
T Consensus 94 d------g~i~v~d~~~~~~~--~-~~-~~~~~~i~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 R------GIIRIINPITMQCI--K-HY-VGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp T------CEEEEECTTTCCEE--E-EE-ESCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred C------CEEEEEEchhceEe--e-ee-cCCCCcEEEEEEC-CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 7 89999999988761 1 12 2355667889998 7 9999999999999999999999999887 356
Q ss_pred cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee----------------------------cCCceeEEEE
Q 016446 143 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH----------------------------LLHRNKKVDF 193 (389)
Q Consensus 143 ~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~----------------------------~~~~~~~v~f 193 (389)
.|.+++|+ ++.+|++++ .|++|++||+.+++++..+.. |...+..++|
T Consensus 163 ~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCG---MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CEEEEEECTTSSEEEEEE---TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ceeEEEECCCCCEEEEec---CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 89999999 588888774 458999999999887665544 8899999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeE--------------EEEcccCCCceEEEEEcCC--CcEEEEEc-CCeEEEEeC
Q 016446 194 IEQFNEKLLVKQENENLQILDVRNAEL--------------MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~tIklWd~~tg~~--------------~~~l~gh~~~v~sv~fspd--g~~laS~s-D~tIklWd~ 256 (389)
+ ++.+++++.|++|++||+.++++ +..+.+|...|++++|+|+ |++|++++ |++|++||+
T Consensus 240 ~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 240 L---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp E---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred c---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 7 67999999999999999998754 8889999999999999999 99999999 999999999
Q ss_pred C-Cc----EEEEeccCc--CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 257 R-GE----LVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 257 ~-G~----~l~tl~gh~--~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+ ++ .+.++.+|. .. |.+++|+|||++||+++.| |+|+|||+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~ 366 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAA-----IRQTSFSRDSSILIAVCDD-----------ASIWRWDRLR 366 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSC-----EEEEEECTTSSEEEEEETT-----------SEEEEEEC--
T ss_pred CCCCCccccceEEcccccCCc-----eEEEEeCCCCCeEEEEeCC-----------CEEEEEEecC
Confidence 7 65 556899883 44 8999999999999999875 9999999863
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=316.80 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=198.6
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC-CCe
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGK 114 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~ 114 (389)
+..+.+| .+.|++++|+|||+.||+ ++.| .+++||++..+.......+ ..|...+.+|+|++| +|+
T Consensus 2 ~~~~~~h-~~~V~~~~~s~~g~~las----~s~D------~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 2 VVIANAH-NEMIHDAVMDYYGKRMAT----CSSD------KTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp CEECCSC-SSCEEEEEECTTSSEEEE----EETT------SCEEEEEBCSSCBCCCEEE--CCCSSCEEEEEECCGGGCS
T ss_pred ceeccCC-cCceEEEEECCCCCEEEE----EeCC------CEEEEEecCCCCcEEEEEE--ccccCCeEEEEecCCCcCC
Confidence 3456776 489999999999999999 4577 8899999864422111222 245566788999843 499
Q ss_pred EEEEecCCCeEEEEeCCCCe--EEEEe--cCCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCe--EEEEEeecC
Q 016446 115 VLTYSAQDSIYKVFDLKNYT--MLYSI--SDKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLL 185 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~--~l~tl--~~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~--~l~tl~~~~ 185 (389)
+|||||.|++|||||+++++ ++.++ |...|.+|+|+| |.+||+++ .|++|++||+.+++ ....+.+|.
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeeeeccc
Confidence 99999999999999998875 45555 457899999996 67888874 45899999998874 246778899
Q ss_pred CceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCCe----EEEEcccCCCceEEEEEcCCC---cEEEEE
Q 016446 186 HRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN---QLFLTF 246 (389)
Q Consensus 186 ~~~~~v~f~~~------------~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh~~~v~sv~fspdg---~~laS~ 246 (389)
..+.+++|++. ++.+|++++.|++|||||+++++ ++.++.+|...|++|+|+|++ ++|||+
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 99999999842 14588889999999999998876 778899999999999999995 899999
Q ss_pred c-CCeEEEEeCC-Cc---EEEEe--ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 247 R-NRTVAVWNFR-GE---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 247 s-D~tIklWd~~-G~---~l~tl--~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+ |++|+|||++ ++ ....+ .+|..+ |++++|||||++||+++.| ++||||+..
T Consensus 226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~las~~~D-----------~~v~lw~~~ 284 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGGD-----------NKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEETT-----------SCEEEEEEC
T ss_pred ECCCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECCCCCEEEEEcCC-----------CcEEEEEEC
Confidence 9 9999999986 32 23344 456554 8999999999999999875 999999976
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=318.95 Aligned_cols=282 Identities=9% Similarity=0.093 Sum_probs=237.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
...|.++.|+ +++||+++.|++|++|+.++++ ++.++.+|. ..|.+++|+|+|+.|+++ +.| ..+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~----~~d------g~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTC----GTD------RNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEE----ETT------SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-CcccEEEEeCCCCEEEEE----cCC------CeE
Confidence 4678999998 8899999999999999999887 999999875 899999999999999994 467 789
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE---EEEec---CCcEEEEEEc-C
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS---DKHVQEIKIS-P 151 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~---l~tl~---~~~V~~vafS-~ 151 (389)
++|++..+++.....+ ..+...+.+++|+ |+|++|++++.|++|++||+.+++. ...+. ...|.+++|+ +
T Consensus 77 ~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVI--LRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp EEEEEETTEEEEEEEC--CCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred EEEECCCCeeeeeEEe--ecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence 9999988764111111 2344557789998 8999999999999999999988762 33332 4689999999 5
Q ss_pred CceEEEEecCCCCeeEEEEEc------------------CCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 152 GIMLLIFNRSSSHVPLKILSI------------------EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~------------------~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
+.+|++++ .|++|++||+ .+++++.++..|...+..++|+ |++..+++++.|++|++|
T Consensus 154 ~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 154 SVLLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp SSEEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEE
T ss_pred CCEEEEEc---CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEE
Confidence 77888764 4589999994 5899999999999999999998 778899999999999999
Q ss_pred ECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC---Cc--EE---------------------------
Q 016446 214 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GE--LV--------------------------- 261 (389)
Q Consensus 214 d~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~---G~--~l--------------------------- 261 (389)
|+++++++..+.+|...|.+++|+|+|++|+++.|++|++|+++ |+ ++
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 99999999999999999999999999999999899999999984 32 11
Q ss_pred ---------EEe-ccCcCCcCCCCeeEEE-ECCCC---CEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 262 ---------TSF-EDHLLWHPDCNTNNIY-ITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 262 ---------~tl-~gh~~~~~~~~v~sv~-fSpdG---~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
..+ .+|... |.+++ ++||| ++||||+.| |+|+|||+.+++.
T Consensus 310 ~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~g~~~~~l~s~~~D-----------g~i~~W~~~~~~~ 364 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGMD-----------GGMSIWDVRSLES 364 (372)
T ss_dssp ---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEETT-----------SEEEEEEHHHHHH
T ss_pred ccccCccccccccccccCC-----cceeEEecCCCcceeeEEEecCC-----------CceEEEEecChhH
Confidence 223 488876 89998 45888 999999875 9999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=326.14 Aligned_cols=275 Identities=11% Similarity=0.152 Sum_probs=222.8
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecC-CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~-~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
+.+||++. |++|+|||..+|++++.+..+ |.+.|.+|+|+|||+.||+ |+.| ..++||++.++++
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las----gs~D------g~v~iWd~~~~~~--- 181 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQKR--- 181 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SCEEEEETTTTEE---
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE----EECC------CeEEEEEcCCCcE---
Confidence 66777775 999999999999998877643 3478999999999999999 5577 8899999998876
Q ss_pred ceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 92 FALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 92 ~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
+.. ..+...+.+++ +|+++|++|+.|+++++||..... .+.++. ...|..+.++ +|.++++++ .|+.
T Consensus 182 --~~~~~~h~~~v~~~s---~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~---~D~~ 253 (420)
T 4gga_A 182 --LRNMTSHSARVGSLS---WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG---NDNL 253 (420)
T ss_dssp --EEEECCCSSCEEEEE---EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSC
T ss_pred --EEEEeCCCCceEEEe---eCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee---cccc
Confidence 322 23334344444 467899999999999999987655 556664 5789999999 688888764 4589
Q ss_pred EEEEEcCCCe----EEEEEeecCCceeEEEEEecCCCeEEEE--eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 167 LKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 167 iklWd~~tG~----~l~tl~~~~~~~~~v~f~~~~~~~l~~~--s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
|++|++.+|+ .+..+..|...+..++|++..+..++++ +.|++|||||+.+|+++..+..|. .+.+++|+|++
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~ 332 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHY 332 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTT
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCC
Confidence 9999999886 4577888999999999985444555553 489999999999999999988775 68899999999
Q ss_pred cEEEEE--c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 241 QLFLTF--R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 241 ~~laS~--s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
+.++++ . |++|+|||+. ++++.+|+||... |.+|+|||||++|||||.| ++|||||+.+.
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spdg~~l~S~s~D-----------~tvriWdv~~~ 396 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAAD-----------ETLRLWRCFEL 396 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEETT-----------TEEEEECCSCS
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEecC-----------CeEEEEECCCC
Confidence 988875 3 8999999996 9999999999987 8999999999999999875 99999999888
Q ss_pred eEEEEecCCC
Q 016446 317 KCLAKINATN 326 (389)
Q Consensus 317 ~~l~tl~gH~ 326 (389)
.+.+....|.
T Consensus 397 ~~~~~~~~~~ 406 (420)
T 4gga_A 397 DPARRREREK 406 (420)
T ss_dssp SCC-------
T ss_pred Cccchhhhcc
Confidence 7777776665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=313.10 Aligned_cols=298 Identities=12% Similarity=0.044 Sum_probs=237.1
Q ss_pred eEEEEecccceeeeeeecCCcceEEEEEEeeC---CCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeec
Q 016446 24 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESES 99 (389)
Q Consensus 24 tiklW~~~tg~~l~tl~~~~~~~v~sv~~spd---g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~ 99 (389)
.+..|+....+.+..+.+|. +.|.+|+|+|+ |+.|++ ++.| ..++||++.+ ++. ....+ ..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~g~~l~~----~~~d------g~i~iw~~~~~~~~--~~~~~-~~h 85 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSSPD-DSIGCLSFSPPTLPGNFLIA----GSWA------NDVRCWEVQDSGQT--IPKAQ-QMH 85 (368)
T ss_dssp ---CCSSCTTCCEECSSCCS-SCEEEEEECCTTSSSEEEEE----EETT------SEEEEEEECTTSCE--EEEEE-EEC
T ss_pred EeccCCCCCcceeEeccCCC-CceEEEEEcCCCCCceEEEE----ECCC------CcEEEEEcCCCCce--eEEEe-ccc
Confidence 34456666678888888874 99999999999 699999 4577 7899999987 443 11112 245
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-cCCcEEEEEE--c-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKHVQEIKI--S-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-~~~~V~~vaf--S-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
...+.+++|+ |+|++|++++.|++|++||+.+++++... +...|.+++| + ++.+|++++ .|++|++||++++
T Consensus 86 ~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 86 TGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS---WDKTLKFWDTRSS 161 (368)
T ss_dssp SSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE---TTSEEEEECSSCS
T ss_pred cCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc---CCCcEEEEECCCC
Confidence 6667889998 89999999999999999999999987655 4678999999 7 577787764 4589999999999
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE--EcccCCCceEEEEEcCCCcE----EEEEc-C
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQL----FLTFR-N 248 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~gh~~~v~sv~fspdg~~----laS~s-D 248 (389)
+++.++..| ..+..+.+. +..+++++.|+++++||+....... ....+...+..+++.++++. +++++ |
T Consensus 162 ~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 162 NPMMVLQLP-ERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SCSEEEECS-SCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred cEEEEEecC-CCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 999999966 455666654 5688889999999999998765422 22344556677777666654 88888 9
Q ss_pred CeEEEEeCC-C---cEEEEeccCcCCcC-------CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 249 RTVAVWNFR-G---ELVTSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 249 ~tIklWd~~-G---~~l~tl~gh~~~~~-------~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
++|++||++ + +++.++.+|..... ...|.+++|+|||++||+++.| |+|+|||+.+++
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----------g~i~iwd~~~~~ 306 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD-----------GRFSFWDKDART 306 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT-----------SCEEEEETTTTE
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC-----------CeEEEEECCCCc
Confidence 999999997 5 67888998875100 0017999999999999999865 999999999999
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++.++.+|. ..|++++|||||++||+|+.|+..+.|+
T Consensus 307 ~~~~~~~~~----------------------------------~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 307 KLKTSEQLD----------------------------------QPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEECCCCS----------------------------------SCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred EEEEecCCC----------------------------------CCceEEEECCCCCeEEEEeccccccccc
Confidence 999999998 5999999999999999999998766654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=321.72 Aligned_cols=275 Identities=13% Similarity=0.133 Sum_probs=226.5
Q ss_pred ccEEEEEee--c-cEEEEEecCceEEEEecccceeeeeeec-CCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--R-DIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~-~~~a~~~~~gtiklW~~~tg~~l~tl~~-~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
..|..|.|+ + ++||+++.||+|++|++.+++....+.. .|...|.+++|+| +++.|+++ +.| ..+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~d------~~i 143 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SIR------GAT 143 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE----ETT------TEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE----eCC------CEE
Confidence 578999999 5 7999999999999999998988888763 3458999999999 78999884 567 789
Q ss_pred eEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc-
Q 016446 79 KIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI- 153 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~- 153 (389)
++|++..+.. ..+.. ..+...+.+++|+ |+|++|++++.|++|++||+ +++++.++. ...|.+++|+| +.
T Consensus 144 ~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 144 TLRDFSGSVI---QVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEETTSCEE---EEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEECCCCce---EEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 9999874322 11211 1223456789998 89999999999999999999 688887775 57899999995 66
Q ss_pred eEEEEecCCCCeeEEEEEcCC----CeEEEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEEcccCC
Q 016446 154 MLLIFNRSSSHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~t----G~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
+|+++ +.|++|++||+.+ ++++.++ +|...+..++|+ | ++..+++++.|++|+|||++++++++.+.+|.
T Consensus 219 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 219 LMATS---SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEEEE---ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred EEEEE---eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 67776 4468999999998 8899888 588999999998 6 88999999999999999999999888877664
Q ss_pred -----------------CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 229 -----------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 229 -----------------~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
..+..++|+|||++ +++ |++|+|||+. |+++.+|.+|... ..+..++|+|||++||
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~---~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA---GIISLNKFSPTGDVLA 368 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC---SCCCEEEECTTSSEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC---ceEEEEEEecCccEEE
Confidence 34455788888888 777 9999999996 9999999986421 1267789999999999
Q ss_pred EEecCCCcccccCCCCCeEEEEeCCC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+|+ | ++|+|||+.+
T Consensus 369 s~s-d-----------~~i~iw~~~~ 382 (383)
T 3ei3_B 369 SGM-G-----------FNILIWNRED 382 (383)
T ss_dssp EEE-T-----------TEEEEEECC-
T ss_pred Eec-C-----------CcEEEEecCC
Confidence 986 4 8999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=322.93 Aligned_cols=273 Identities=12% Similarity=0.132 Sum_probs=231.0
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEE
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 126 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tik 126 (389)
+.++.|++ +.|+++ +.| ..+++|++.+|+. ...+...+...+.+++|+ |||++||+|+.|++|+
T Consensus 96 ~~~~~~s~--~~l~~~----~~d------~~v~lw~~~~~~~---~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAV----ALE------RNVYVWNADSGSV---SALAETDESTYVASVKWS-HDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEE----EET------TEEEEEETTTCCE---EEEEECCTTCCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEE----ECC------CeEEEeeCCCCcE---eEeeecCCCCCEEEEEEC-CCCCEEEEECCCCeEE
Confidence 33455554 556774 355 7899999999886 233433356667889998 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcC-CCeEEEEEeecCCceeEEEEEecCCCeEEE
Q 016446 127 VFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 127 lWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~-tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
+||+.+++++.++. ...|.+++|+ +.+|++++ .|++|++||+. .++++.++.+|.+.+..++|+ |++..+++
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 234 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWN-RHVLSSGS---RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLAS 234 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE-TTEEEEEE---TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred EEECcCCeEEEEecCCCCceEEEEEC-CCEEEEEc---CCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-CCCCEEEE
Confidence 99999999998886 4689999995 56777764 45899999999 678899999999999999998 68889999
Q ss_pred EeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC-cEEEEEc---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeE
Q 016446 204 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 278 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg-~~laS~s---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~s 278 (389)
++.|++|++||+++++++..+.+|...|.+++|+|++ .++++++ |++|++||+. ++++.++..+ .. |.+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~-----v~~ 308 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ-----VTS 308 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC-----EEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc-----EEE
Confidence 9999999999999999999999999999999999976 5677753 9999999996 9999999744 33 899
Q ss_pred EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE--ecCCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 279 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 279 v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
++|+|||++|++++. +.|++|+|||+.++++... +.+|.
T Consensus 309 ~~~s~~~~~l~~~~g---------~~dg~i~v~~~~~~~~~~~~~~~~h~------------------------------ 349 (401)
T 4aez_A 309 LIWSPHSKEIMSTHG---------FPDNNLSIWSYSSSGLTKQVDIPAHD------------------------------ 349 (401)
T ss_dssp EEECSSSSEEEEEEC---------TTTCEEEEEEEETTEEEEEEEEECCS------------------------------
T ss_pred EEECCCCCeEEEEee---------cCCCcEEEEecCCccceeEEEecCCC------------------------------
Confidence 999999999999642 2469999999999776654 67887
Q ss_pred ccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 357 GEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.+++|+|||++|++|+.||+|++|+.
T Consensus 350 ----~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 350 ----TRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp ----SCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred ----CCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 58999999999999999999999999984
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=317.91 Aligned_cols=282 Identities=12% Similarity=0.022 Sum_probs=232.6
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe-EEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLT 117 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~-~La 117 (389)
.++ |.+.|.+++|+|+|+.|+++ +.| ..++||++..++..... .....+...+.+++|+ |+|+ +|+
T Consensus 7 ~~~-h~~~v~~~~~s~~~~~l~~~----~~d------~~v~iw~~~~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~~~l~ 73 (342)
T 1yfq_A 7 EQA-PKDYISDIKIIPSKSLLLIT----SWD------GSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFI-DNTDLQIY 73 (342)
T ss_dssp SSC-CSSCEEEEEEEGGGTEEEEE----ETT------SEEEEEEEETTTTEEEE-EEEEECSSCEEEEEEE-ESSSEEEE
T ss_pred ccC-CCCcEEEEEEcCCCCEEEEE----cCC------CeEEEEEeCCCCccccc-eeeeecCCceEEEEEC-CCCCcEEE
Confidence 344 46899999999999999994 466 78999999887621001 1112455667889998 8999 999
Q ss_pred EecCCCeEEEEeC-CCCeEEE-Ee--cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC---------CeEEEEEeec
Q 016446 118 YSAQDSIYKVFDL-KNYTMLY-SI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---------GTVLKVFYHL 184 (389)
Q Consensus 118 s~s~D~tiklWdl-~~g~~l~-tl--~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t---------G~~l~tl~~~ 184 (389)
+|+.|++|++||+ .++++.. .. +...|.+++|+|+.+|++++ .|++|++||+.+ ++++.++. |
T Consensus 74 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE---TTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEc---CCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 9999999999999 8887632 22 45689999999988888764 458999999998 88888887 7
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-Ce--EEEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC-C
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AE--LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G 258 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~--~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~-G 258 (389)
...+..++|+ + +.+++++.|++|++||+++ ++ .......|...+.+++|+| ++++|++++ |++|+||+++ +
T Consensus 150 ~~~v~~~~~~-~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 150 KNKIFTMDTN-S--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCCEEEEEEC-S--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEEec-C--CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 7899999997 3 3388899999999999998 55 3445568899999999999 999999999 9999999996 6
Q ss_pred ------cEEEEeccCcCCcC----CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC-CC
Q 016446 259 ------ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NC 327 (389)
Q Consensus 259 ------~~l~tl~gh~~~~~----~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH-~~ 327 (389)
+++.++++|..... ...|.+++|+|||++|++++.| |+|++||+.+++++.++.+| .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~h~- 294 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----------GIISCWNLQTRKKIKNFAKFNE- 294 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----------SCEEEEETTTTEEEEECCCCSS-
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-----------ceEEEEcCccHhHhhhhhcccC-
Confidence 78899999865100 0128999999999999999865 99999999999999999998 7
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc-EEEc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL-VHVW 387 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t-IrlW 387 (389)
..|++++ |||++||+|+.|++ .+.|
T Consensus 295 ---------------------------------~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 ---------------------------------DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp ---------------------------------SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred ---------------------------------CCceEec--CCCCeEEEEecCCcccccc
Confidence 5899999 99999999999998 4433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=322.38 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=236.1
Q ss_pred eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCC
Q 016446 34 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVN 112 (389)
Q Consensus 34 ~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pd 112 (389)
.+..++.+|....+.++.| +++.|++ ++.| ..+++||+.++++ +.. ..+.+.+.+++|+ |+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~s----gs~d------g~i~vwd~~~~~~-----~~~~~~h~~~V~~l~~~-~~ 173 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVIT----GADD------KMIRVYDSINKKF-----LLQLSGHDGGVWALKYA-HG 173 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEE----EETT------SCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-ST
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEE----EcCC------CcEEEEECCCCcE-----EEEEeCCCcCEEEEEEc-CC
Confidence 3566889887555676666 5689999 4577 8999999988875 222 2466677889998 78
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc--C-CceEEEEecCCCCeeEEEEEcCCCe-----------
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS--P-GIMLLIFNRSSSHVPLKILSIEDGT----------- 176 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS--~-g~~la~~~~~s~d~tiklWd~~tG~----------- 176 (389)
+ +|++|+.|++|++||+.+++++.++. ...|.+++|+ + +.+|++++ .|++|++||+.+++
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE---TTSCEEEEECCCCCCC------CCS
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc---CCCcEEEeeCCCCcccccccccCCc
Confidence 8 99999999999999999999998886 4689999998 3 57787764 45899999999887
Q ss_pred ------------EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 177 ------------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 177 ------------~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
++..+.+|...+..+. +++..+++++.|++|++||+.+++++..+.+|...|.+++|+|++++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence 4667787777777763 5688999999999999999999999999999999999999999999999
Q ss_pred EEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 245 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 245 S~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
+++ |++|++||++ |+++.++++|... |.+++|+ +++|++++.| |+|++||+.+++....+
T Consensus 327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~s~s~d-----------g~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 327 SASMDTTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRKFSY 388 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEEC--SSEEEEEETT-----------SEEEEEETTTCCEEEEE
T ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCc-----EEEEEEc--CCEEEEEeCC-----------CcEEEEECCCCceeeee
Confidence 999 9999999996 9999999999887 7999997 6899999875 99999999998887666
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
. |. ..+..++|+|+|+.|++|+ |++|++||.
T Consensus 389 ~-~~----------------------------------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 389 H-HT----------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp E-CT----------------------------------TCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred c-CC----------------------------------CCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 4 33 3677899999999999999 999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=317.05 Aligned_cols=282 Identities=11% Similarity=0.104 Sum_probs=227.9
Q ss_pred cccEEEEEee--c-cEEEEEec---CceEEEEecccceeeeeeecCCcceEEEEEEeeC---CCEEEEEEEeecCCCcce
Q 016446 3 RTKVIEIVAA--R-DIVFALAH---SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSL 73 (389)
Q Consensus 3 ~~~v~~i~~~--~-~~~a~~~~---~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spd---g~~l~s~s~~~~~d~~~l 73 (389)
...|.+|.|+ + .++++++. ||+|++|+..++++.......|...|.+++|+|+ |+.|++ ++.|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~----~~~d---- 89 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT----GDFG---- 89 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE----EETT----
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE----ecCC----
Confidence 3578999999 4 56667776 9999999999888876655445689999999999 799998 4567
Q ss_pred eeeeeeEeEeccCC-CCCcceeEeeecccCceeEE------EecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec---C-
Q 016446 74 KCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVE------FDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS---D- 141 (389)
Q Consensus 74 ~~~~~~l~~i~~g~-~~~~~~l~~~~~~~~~~~v~------Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~---~- 141 (389)
..+++|++..++ .. . .+ ..+...+.+++ |+ |+|++|++++.|++|++||+.+++ ++.++. +
T Consensus 90 --g~i~iwd~~~~~~~~--~-~~-~~~~~~v~~~~~~~~~~~s-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 90 --GNLHIWNLEAPEMPV--Y-SV-KGHKEIINAIDGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp --SCEEEECTTSCSSCS--E-EE-CCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred --CeEEEEeCCCCCccE--E-EE-EecccceEEEeeccccccC-CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 789999998887 31 1 12 13444566674 55 899999999999999999999887 666664 1
Q ss_pred --CcEEEEE----Ec-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec--CCCeEEEEeCCCcEEE
Q 016446 142 --KHVQEIK----IS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQI 212 (389)
Q Consensus 142 --~~V~~va----fS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~--~~~~l~~~s~D~tIkl 212 (389)
..|++++ |+ ++.+|++++ .|++|++||+++++++.. ..|...+..++|++. ++..+++++.|++|++
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGY---DNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEE---TTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEc---cCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 2799999 67 588888764 458999999999998655 457789999999832 7899999999999999
Q ss_pred EECCCCeEEEEcc-----cCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC-C-------------------cEEEEec
Q 016446 213 LDVRNAELMEVSR-----TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-G-------------------ELVTSFE 265 (389)
Q Consensus 213 Wd~~tg~~~~~l~-----gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~-G-------------------~~l~tl~ 265 (389)
||+++++++..+. +|...|.+++|+|+++ +|++++ |++|++||++ + +++.++.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9999988765554 9999999999999999 899998 9999999985 3 4788999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEE-EEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~la-S~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+|..+ |.+++|+|||++|| |++.| ++|+|||+.+.+++
T Consensus 319 ~~~~~-----v~~~~~s~~~~~l~~s~~~d-----------~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 319 LSTQP-----ISSLDWSPDKRGLCVCSSFD-----------QTVRVLIVTKLNKI 357 (357)
T ss_dssp CCSSC-----EEEEEECSSSTTEEEEEETT-----------SEEEEEEECC----
T ss_pred cCCCC-----eeEEEEcCCCCeEEEEecCC-----------CcEEEEECCCcccC
Confidence 99877 89999999999999 78764 99999999876653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=325.52 Aligned_cols=315 Identities=13% Similarity=0.168 Sum_probs=229.5
Q ss_pred CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC-----Cc---ceeEeeecc------------cC
Q 016446 43 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SG---FALFESESL------------KW 102 (389)
Q Consensus 43 ~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~-----~~---~~l~~~~~~------------~~ 102 (389)
+.+.|.+|+|+|+|+.||+ ++.| ..++||++..++.. .. ...+. .+. ..
T Consensus 27 ~~~~V~~v~~s~~g~~la~----g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLAT----GDKG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp GGGSEEEEEECSSSSEEEE----EETT------SEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCC
T ss_pred ccCcEEEEEECCCCCEEEE----EcCC------CeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCc
Confidence 3589999999999999999 5577 88999999877621 00 11111 232 45
Q ss_pred ceeEEEecCCC--eEEEEecCCCeEEEEeCCCCeEE---------------------------------------EEe--
Q 016446 103 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-- 139 (389)
Q Consensus 103 ~~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~~l---------------------------------------~tl-- 139 (389)
+.+++|+ |++ .+|++++.|++|+|||+.++++. ..+
T Consensus 96 V~~l~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 7889998 888 79999999999999999775542 122
Q ss_pred -cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEE-------EeecCCceeEEEEEecCC-CeEEEEeCCC
Q 016446 140 -SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKV-------FYHLLHRNKKVDFIEQFN-EKLLVKQENE 208 (389)
Q Consensus 140 -~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~t-------l~~~~~~~~~v~f~~~~~-~~l~~~s~D~ 208 (389)
|...|.+++|+ +|.+||++ .|++|+|||+. ++++++. +.+|...+..++|+ |++ ..+++++.|+
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKG 249 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTS
T ss_pred CCCcceEEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCC
Confidence 35689999999 57888764 26899999999 5666664 45788899999998 666 8899999999
Q ss_pred cEEEEECCCCeE----EEEcccCCC------------ceEEEEEcCCCcEEEEEcCCeEEEEeCC--CcEEEEeccCcCC
Q 016446 209 NLQILDVRNAEL----MEVSRTEFM------------TPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLW 270 (389)
Q Consensus 209 tIklWd~~tg~~----~~~l~gh~~------------~v~sv~fspdg~~laS~sD~tIklWd~~--G~~l~tl~gh~~~ 270 (389)
+|+|||++++++ ++.+.+|.. .|.+++|+|+|++|+++++++|+|||+. ++++.++.+|...
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999999997 788999987 9999999999999999988999999994 8899999999753
Q ss_pred cC--------CC--CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 271 HP--------DC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 271 ~~--------~~--~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
.. ++ .+..++|+|||++||+|+.| |+|+|||+.+++++ ++.+|..........++...
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEEEEcCCCcce-eeeecccccccccccCCccc
Confidence 11 00 02349999999999998764 99999999999887 77777632111111111000
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
....+-.+ .......-.....|..++|+|+|++||+|+.|+ +.+|.
T Consensus 398 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 398 CASGKRKK-DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp ECSSCCCT-TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccCCccc-ccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 00000000 000000111235799999999999999999988 55664
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=299.08 Aligned_cols=279 Identities=12% Similarity=0.170 Sum_probs=231.7
Q ss_pred cccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 3 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 3 ~~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+..|..|.|. +++||+++.||+|++|+..+++++..+..|. ..|.+++|+|+|+.|+++ +.| ..+++|
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~----~~d------g~i~~~ 86 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFG----GKD------TMINGV 86 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEE----ETT------SCEEEE
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEe----cCC------CeEEEE
Confidence 4578889887 8899999999999999999999999999875 899999999999999994 466 778888
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC--CceEEE
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLI 157 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~--g~~la~ 157 (389)
++...........+ ..+...+.+++|+ +++|++++.|++|++|| .++++..+. ...|.+++|+| +.++++
T Consensus 87 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTL-IGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEE-CCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccch-hhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 88654321111111 2345556778884 67999999999999999 677766664 57899999984 888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEee-cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~-~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~f 236 (389)
++ .|++|++|| .++++.++.. |...+..++|+ |++ .+++++.|++|++||+++++++..+.+|...|.+++|
T Consensus 161 ~~---~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 161 AS---ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDG-HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp EE---TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EE---CCCCEEEEe--cCceEEEEeccCcccEEEEEEc-CCC-eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence 74 458999999 6789999987 88999999998 444 4889999999999999999999999999999999999
Q ss_pred cCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 237 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 237 spdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+|+|+ |++++ |++|++||+. ++++.++..|... |.+++|+|||+++ +++. |++|+|||+.
T Consensus 234 ~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~-~~~~-----------dg~i~iw~~~ 295 (313)
T 3odt_A 234 LPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAIS-----IWSVDCMSNGDII-VGSS-----------DNLVRIFSQE 295 (313)
T ss_dssp CTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSC-----EEEEEECTTSCEE-EEET-----------TSCEEEEESC
T ss_pred ecCCC-EEEEecCCEEEEEECCCCceeEEEeccCce-----EEEEEEccCCCEE-EEeC-----------CCcEEEEeCC
Confidence 99995 66776 9999999996 9999999999876 8999999999955 5655 5999999999
Q ss_pred CCeEEEEec
Q 016446 315 TGKCLAKIN 323 (389)
Q Consensus 315 tg~~l~tl~ 323 (389)
+++++....
T Consensus 296 ~~~~~~~~~ 304 (313)
T 3odt_A 296 KSRWASEDE 304 (313)
T ss_dssp GGGCCC---
T ss_pred CCceeehhh
Confidence 988765543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=323.68 Aligned_cols=255 Identities=13% Similarity=0.107 Sum_probs=201.3
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC-CCeEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV-NGKVL 116 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p-dG~~L 116 (389)
+.+| .+.|++|+|+|+|+.||+ ++.| .+++|||+..++. ..+.. ..|...+.+|+|++| +|++|
T Consensus 9 ~~~H-~~~V~~v~~s~~g~~las----gs~D------~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 9 DTSH-EDMIHDAQMDYYGTRLAT----CSSD------RSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp ------CCEEEEEECGGGCEEEE----EETT------TEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred cccc-cCeEEEeeEcCCCCEEEE----EeCC------CeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 4454 599999999999999999 4577 8999999987752 11222 245666788999844 59999
Q ss_pred EEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCe---EEEEEeecCC
Q 016446 117 TYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLH 186 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~---~l~tl~~~~~ 186 (389)
||||.|++|||||+.+++ ++.++. ...|.+|+|+| |.+||++ +.|++|+|||+.++. ++..+.+|..
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg---s~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG---SSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE---CSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE---cCCCCEEEEecCCCCCcceeeeeccccC
Confidence 999999999999999874 566664 46899999995 6788876 456899999998763 2456678888
Q ss_pred ceeEEEEEecC----------------CCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceEEEEEcCCC----cEE
Q 016446 187 RNKKVDFIEQF----------------NEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYEN----QLF 243 (389)
Q Consensus 187 ~~~~v~f~~~~----------------~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg----~~l 243 (389)
.+..++|++.. +.+|++++.|++|||||++++ ++++++.+|...|++|+|+|++ ++|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 99999998421 357888999999999999865 5788899999999999999997 899
Q ss_pred EEEc-CCeEEEEeCCC----c-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CC
Q 016446 244 LTFR-NRTVAVWNFRG----E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG 316 (389)
Q Consensus 244 aS~s-D~tIklWd~~G----~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg 316 (389)
||++ |++|+|||++. + ..+.+.+|..+ |++++|||||++||+++.| ++||||+.. .|
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----v~~v~~sp~g~~las~~~D-----------~~v~lw~~~~~g 295 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGGD-----------NKVTLWKESVDG 295 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSC-----EEEEEECTTTCCEEEEESS-----------SCEEEEEECTTS
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCc-----EEEEEEcCCCCEEEEEcCC-----------CeEEEEEECCCC
Confidence 9999 99999999852 1 23456778765 8999999999999999875 999999975 34
Q ss_pred --eEEEEecCCC
Q 016446 317 --KCLAKINATN 326 (389)
Q Consensus 317 --~~l~tl~gH~ 326 (389)
+|+.++...+
T Consensus 296 ~~~~~~~~~~~~ 307 (316)
T 3bg1_A 296 QWVCISDVNKGQ 307 (316)
T ss_dssp CEEEEEECC---
T ss_pred cEEEeeeccCCC
Confidence 5777777655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=346.23 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=245.2
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~ 114 (389)
..+++.+|. +.|.+++|||+|+.||++ +.| ..++||++.+|+.. ..+ ..+.+.+.+++|+ |||+
T Consensus 5 ~~~~~~~h~-~~v~~i~~sp~~~~la~~----~~~------g~v~iwd~~~~~~~--~~~--~~~~~~v~~~~~s-~~~~ 68 (814)
T 3mkq_A 5 IKKTFSNRS-DRVKGIDFHPTEPWVLTT----LYS------GRVEIWNYETQVEV--RSI--QVTETPVRAGKFI-ARKN 68 (814)
T ss_dssp CEEEEEEEC-SCEEEEEECSSSSEEEEE----ETT------SEEEEEETTTTEEE--EEE--ECCSSCEEEEEEE-GGGT
T ss_pred cceeeecCC-CceEEEEECCCCCEEEEE----eCC------CEEEEEECCCCceE--EEE--ecCCCcEEEEEEe-CCCC
Confidence 456788875 899999999999999994 466 78999999888751 112 2355667889998 8999
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-eEEEEEeecCCceeE
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKK 190 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-~~l~tl~~~~~~~~~ 190 (389)
+||+++.|++|+|||+.+++++.++. ...|.+++|+ +|.+|++++ .|++|++||+.++ ++..++.+|.+.+..
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS---DDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE---TTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc---CCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 99999999999999999999988875 4689999999 577888764 4589999999997 888999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-CceEEEEEcC--CCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~v~sv~fsp--dg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
++|++.++..+++++.|++|++||+.++++...+..|. ..+..++|+| ++++|++++ |++|++||+. ++++.++.
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 99994367889999999999999999998877776655 8999999999 999999998 9999999997 99999999
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 345 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 345 (389)
+|... |.+++|+|||++|++++.| |+|++||+.+++++.++..|.
T Consensus 226 ~~~~~-----v~~~~~~~~~~~l~~~~~d-----------g~v~vwd~~~~~~~~~~~~~~------------------- 270 (814)
T 3mkq_A 226 GHMSN-----VSFAVFHPTLPIIISGSED-----------GTLKIWNSSTYKVEKTLNVGL------------------- 270 (814)
T ss_dssp CCSSC-----EEEEEECSSSSEEEEEETT-----------SCEEEEETTTCSEEEEECCSS-------------------
T ss_pred CCCCC-----EEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEeecCC-------------------
Confidence 99876 8999999999999999865 999999999999999999987
Q ss_pred cccccceecccccccCCEEEEEECCCCC--EEEEecCCCcEEEcc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 388 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~--~LaSgs~D~tIrlW~ 388 (389)
..|++++|+|+|+ .+++|+ |+.+.+|+
T Consensus 271 ---------------~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 271 ---------------ERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp ---------------SSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred ---------------CcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 5899999999997 466665 55566665
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=304.58 Aligned_cols=270 Identities=15% Similarity=0.153 Sum_probs=205.0
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC----eEEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEE
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g----~~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tik 168 (389)
.|...+.+++|+ |||++||+|+.|++|+|||+.++ +++.++. ...|.+++|+| +.+|++++ .|++|+
T Consensus 9 gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~---~dg~v~ 84 (351)
T 3f3f_A 9 GHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS---YDKTVK 84 (351)
T ss_dssp CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE---TTSCEE
T ss_pred ccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc---CCCeEE
Confidence 455667889998 89999999999999999999876 4556654 57899999996 88998874 458999
Q ss_pred EEEcCCC---------eEEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCCeEEEEcc------------
Q 016446 169 ILSIEDG---------TVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAELMEVSR------------ 225 (389)
Q Consensus 169 lWd~~tG---------~~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg~~~~~l~------------ 225 (389)
+||+.++ +++.++..|...+..++|+ |+ +..+++++.|++|++||++++++++.+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 9999998 7899999999999999998 66 7889999999999999999988765543
Q ss_pred -cCCCceEEEEEcCC---CcEEEEEc-CCeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCCC----CEEEEEec
Q 016446 226 -TEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCK 293 (389)
Q Consensus 226 -gh~~~v~sv~fspd---g~~laS~s-D~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpdG----~~laS~s~ 293 (389)
+|...+.+++|+|+ +++|++++ |+.+.+|+.. ++. +.++.+|... |.+++|+|+| ++||+|+.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL-----IRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC-----EEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc-----eeEEEECCCCCCcceEEEEEcC
Confidence 78999999999997 99999998 9999888876 664 8889999877 8999999999 89999987
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCC----------CCCCCccccc--cccceecccccccC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS----------SSTGKSKKLN--KSSYIRSTVGEALE 361 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~ 361 (389)
| ++|+|||+.++.+......+............ ++......++ ........+.+|..
T Consensus 239 d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 239 D-----------GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp T-----------SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred C-----------CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 5 99999999887443332222110000000000 0000000000 01223333444557
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 362 DITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 362 ~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.|++++|+|||++||||+.||+|++|+
T Consensus 308 ~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 308 EVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 999999999999999999999999997
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=297.25 Aligned_cols=269 Identities=11% Similarity=0.149 Sum_probs=217.0
Q ss_pred EEee-ccEEEEEecCceEEEEecccceeeeeeecC-CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC
Q 016446 9 IVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 86 (389)
Q Consensus 9 i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~-~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g 86 (389)
|-++ +.+||++ .|++|||||.++|++++++..+ |...|.+|+|+|+|+.||+ ++.| ..++||++.+|
T Consensus 31 l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s----gs~D------g~v~iw~~~~~ 99 (318)
T 4ggc_A 31 VDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQ 99 (318)
T ss_dssp EEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SEEEEEETTTT
T ss_pred EEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE----EECC------CcEEEeecCCc
Confidence 5566 6677776 4999999999999999988753 4578999999999999999 5577 89999999998
Q ss_pred CCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 87 KPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 87 ~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
++ +.. ..+... ..+++ +++++|++++.|+.+++|+..++. .+.++. ...+..++|+ +|.+|++++
T Consensus 100 ~~-----~~~~~~h~~~--~~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-- 169 (318)
T 4ggc_A 100 KR-----LRNMTSHSAR--VGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-- 169 (318)
T ss_dssp EE-----EEEEECCSSC--EEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--
T ss_pred ee-----EEEecCccce--EEEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe--
Confidence 76 222 122232 24555 578899999999999999988765 555554 5789999999 688888764
Q ss_pred CCCeeEEEEEcCCCeE----EEEEeecCCceeEEEEEecCCCeEEE--EeCCCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 162 SSHVPLKILSIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 162 s~d~tiklWd~~tG~~----l~tl~~~~~~~~~v~f~~~~~~~l~~--~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
.|++|+|||+.+|+. +.....|.+.+..+++.+..+..+.. ++.|++|+|||.++++..... .|...+..++
T Consensus 170 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 170 -NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp -TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred -cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 458999999998874 35556677889999998433344333 458999999999998887764 4666899999
Q ss_pred EcCCCcEEEEE--c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 236 FLYENQLFLTF--R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 236 fspdg~~laS~--s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
|+|+++.++++ + |++|+|||++ |+++++|++|..+ |++|+|||||++|||||.| ++||||
T Consensus 248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-----V~~l~~spdg~~l~S~s~D-----------~~v~iW 311 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAAD-----------ETLRLW 311 (318)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEETT-----------TEEEEE
T ss_pred ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEecC-----------CeEEEE
Confidence 99999988765 4 9999999997 9999999999987 8999999999999999875 999999
Q ss_pred eCCCC
Q 016446 312 SILTG 316 (389)
Q Consensus 312 d~~tg 316 (389)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=334.40 Aligned_cols=279 Identities=12% Similarity=0.095 Sum_probs=216.7
Q ss_pred ccEEEEEee---ccEEEEEecCceEEEEecccceeee--eeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~---~~~~a~~~~~gtiklW~~~tg~~l~--tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+|.+|.|. +.+||+++.||+|+|||+.+++..+ .+.+| ...|.+|+|+| +++.|++ ++.| .+
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s----~s~D------~~ 188 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYA----SSME------GT 188 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEE----ECSS------SC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEE----EeCC------CE
Confidence 359999997 5689999999999999998776544 45565 48999999998 6899999 5677 88
Q ss_pred eeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc
Q 016446 78 TKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI 153 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~ 153 (389)
++|||+..+.+ ..+.. +....++.+++|+ |+|++||+|+.|++|++||+ .++++.++. ...|.+|+|+| +.
T Consensus 189 v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~-~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 189 TRLQDFKGNIL---RVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EEEEETTSCEE---EEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEES-SSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred EEEeeccCCce---eEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeecc-CcceeEEEecccceEEeeeecCCCc
Confidence 99999865543 11222 2233446679998 89999999999999999998 466666664 57899999995 54
Q ss_pred -eEEEEecCCCCeeEEEEEcCCCeEEEEE---eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC
Q 016446 154 -MLLIFNRSSSHVPLKILSIEDGTVLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 229 (389)
Q Consensus 154 -~la~~~~~s~d~tiklWd~~tG~~l~tl---~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~ 229 (389)
+|+++ +.|++|+|||+.+++....+ .+|...|.+|+|+ |++.+|++++.|++|+|||+.++++...+.+|..
T Consensus 264 ~~~~s~---s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 264 WFLATA---SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SEEEEE---ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred eEEEEe---cCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 56555 45689999999988765544 4788899999998 7889999999999999999999999888877753
Q ss_pred c------eEEEEEcCCCcEEEEEc-------------CCeEEEEeCC-CcEEEEec-cCcCCcCCCCeeEE-EECCCCCE
Q 016446 230 T------PSAFIFLYENQLFLTFR-------------NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNI-YITSDQDL 287 (389)
Q Consensus 230 ~------v~sv~fspdg~~laS~s-------------D~tIklWd~~-G~~l~tl~-gh~~~~~~~~v~sv-~fSpdG~~ 287 (389)
. +..++|+|++.+++++. +++|++||.+ |+++.++. +|... |.++ +|||||++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-----v~s~~~fspdg~~ 414 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-----ISSLNEFNPMGDT 414 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-----CCCEEEECTTSSC
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-----EEEEEEECCCCCE
Confidence 2 33455666666665552 3689999996 99998876 56554 5676 79999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
||+|+ |++|+|||+++|+..
T Consensus 415 lasg~------------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 415 LASAM------------GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEC------------SSEEEECCCC-----
T ss_pred EEEEc------------CCcEEEEECCcCeee
Confidence 99975 479999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=312.09 Aligned_cols=288 Identities=11% Similarity=0.053 Sum_probs=225.0
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEecccceeeeeee------------cCCcceEEEEEEee-CCCEEEEEEEee
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLN------------VSPDEVIRSLFYNK-NNDSLITVSVYA 66 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~tg~~l~tl~------------~~~~~~v~sv~~sp-dg~~l~s~s~~~ 66 (389)
+..|..|.|+ +++||+++.||+|++|++.+++....+. ..|...|.+++|+| +++.|++ +
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s----~ 118 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS----S 118 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE----E
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE----E
Confidence 5689999997 6999999999999999999888877765 22458999999999 7778888 4
Q ss_pred cCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC---CCeEEEEecCCCeEEEEeCCCCeEEEEec--C
Q 016446 67 SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV---NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 141 (389)
Q Consensus 67 ~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p---dG~~Las~s~D~tiklWdl~~g~~l~tl~--~ 141 (389)
+.| ..+++|++..++. +....+...+..++|+ | ++++|++++.|+.|++||+.+++++..+. .
T Consensus 119 ~~d------~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 119 SFD------KTLKVWDTNTLQT-----ADVFNFEETVYSHHMS-PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp ETT------SEEEEEETTTTEE-----EEEEECSSCEEEEEEC-SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred eCC------CeEEEeeCCCCcc-----ceeccCCCceeeeEee-cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 567 7899999988875 2222344456678887 5 55699999999999999999999888876 4
Q ss_pred CcEEEEEEcC-Cc-eEEEEecCCCCeeEEEEEcCCCe-EEEEE---------------eecCCceeEEEEEecCCCeEEE
Q 016446 142 KHVQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGT-VLKVF---------------YHLLHRNKKVDFIEQFNEKLLV 203 (389)
Q Consensus 142 ~~V~~vafS~-g~-~la~~~~~s~d~tiklWd~~tG~-~l~tl---------------~~~~~~~~~v~f~~~~~~~l~~ 203 (389)
..|.+++|+| +. +|+++ +.|++|++||+.+++ ++..+ ..|...+..++|+ |++..+++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 262 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATA---SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLT 262 (408)
T ss_dssp SCEEEEEECSSCTTEEEEE---ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEE
T ss_pred CcEEEEEECCCCCcEEEEE---cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEE
Confidence 6899999995 56 47666 345899999999877 66666 5688889999998 77889999
Q ss_pred EeCCCcEEEEECCCCeEEEEcccC------CCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCe
Q 016446 204 KQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNT 276 (389)
Q Consensus 204 ~s~D~tIklWd~~tg~~~~~l~gh------~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v 276 (389)
++.|++|++||+.+++....+.++ ......+...+.+.+++++.|++|++||+. ++++.++.+|... |
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v 337 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----V 337 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----E
T ss_pred ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----E
Confidence 999999999999999886655443 122223333445555555559999999996 9999999999877 8
Q ss_pred eEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.+++|+|||++||+++.| |+|+|||+.+++++.....+.
T Consensus 338 ~~~~~s~~~~~l~s~~~d-----------g~i~iw~~~~~~~~~~~~~~~ 376 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRD-----------CNILAWVPSLYEPVPDDDETT 376 (408)
T ss_dssp EEEEEETTTTEEEEEETT-----------SCEEEEEECC-----------
T ss_pred EEEEEcCCCCEEEEECCC-----------CeEEEEeCCCCCccCCCCceE
Confidence 999999999999999875 999999999999887766554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=326.60 Aligned_cols=232 Identities=10% Similarity=0.074 Sum_probs=197.5
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCC--eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g--~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+.+.+++|+ |||++||+|+.|++|+|||+.++ +++.++. ...|.+++|+ +|.+||+++ .|++|+|||+.++
T Consensus 12 ~~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 12 KPSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS---QDRNAYVYEKRPD 87 (377)
T ss_dssp SCCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE---TTSSEEEC-----
T ss_pred CcEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe---CCCeEEEEEcCCC
Confidence 356789998 89999999999999999999988 6777775 4689999999 588898874 4589999999998
Q ss_pred e---EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEEccc-CCCceEEEEEcCCCcEEEEEc-
Q 016446 176 T---VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRT-EFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 176 ~---~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~---~~~~l~g-h~~~v~sv~fspdg~~laS~s- 247 (389)
+ ++.++..|...+..++|+ |++..+++++.|++|++||+++++ +.+.+.+ |...|.+++|+|++++|++++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 8 778888899999999998 688899999999999999999988 4778888 999999999999999999998
Q ss_pred CCeEEEEeCC-------------------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 248 NRTVAVWNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 248 D~tIklWd~~-------------------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
|++|++||++ ++++.++ +|..+ |.+++|+|||++||+++.| ++|
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----v~~~~~sp~~~~l~~~~~d-----------~~i 229 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-----VHAVGFSPSGNALAYAGHD-----------SSV 229 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-----EEEEEECTTSSCEEEEETT-----------TEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce-----EEEEEECCCCCEEEEEeCC-----------CcE
Confidence 9999999983 6788888 88876 8999999999999999865 999
Q ss_pred EEEeCCCCeE----EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 309 NVSSILTGKC----LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 309 klWd~~tg~~----l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
+|||+.++++ +.++.+|. ..|.+++|+|||++|++|+.|+.+
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQ----------------------------------LPLRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSS----------------------------------SCEEEEEEEETTEEEEEESSSSEE
T ss_pred EEEECCCCCCcceeeEeecCCC----------------------------------CceEEEEEcCCCCEEEEEcCCcEE
Confidence 9999999998 88999998 589999999999999999988888
Q ss_pred EEcc
Q 016446 385 HVWS 388 (389)
Q Consensus 385 rlW~ 388 (389)
.+|.
T Consensus 276 ~~~~ 279 (377)
T 3dwl_C 276 LLQG 279 (377)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=313.85 Aligned_cols=280 Identities=9% Similarity=0.101 Sum_probs=227.5
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
+-++++.+++++.||+|++|+.++|++...+...|...|.+|+|+|+|+.|+++ +.| ..+++|++.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~d------g~i~iwd~~~~~~ 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVG----LGN------GLVDIYDVESQTK 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEE----ETT------SCEEEEETTTCCE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEE----CCC------CeEEEEECcCCeE
Confidence 666677788999999999999999999999998777899999999999999994 466 7899999988875
Q ss_pred CCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCC
Q 016446 89 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSH 164 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d 164 (389)
. . .+ ..+...+.+++|+ +++|++++.|++|++||+. .+.++..+. ...|.+++|+ ++.+|++++ .|
T Consensus 169 ~--~-~~-~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d 238 (401)
T 4aez_A 169 L--R-TM-AGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG---ND 238 (401)
T ss_dssp E--E-EE-CCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TT
T ss_pred E--E-Ee-cCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe---CC
Confidence 1 1 11 2345556778885 5799999999999999998 455666664 5789999999 588888874 45
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-Ee--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
++|++||+.+++++.++..|...+..++|+ |++..+++ ++ .|++|++||+.+++++..+. |...|.+++|+|+|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 899999999999999999999999999998 55555554 44 79999999999999999886 556899999999999
Q ss_pred EEEE--Ec-CCeEEEEeCC-CcEEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 242 LFLT--FR-NRTVAVWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 242 ~laS--~s-D~tIklWd~~-G~~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
+|++ |+ |++|++||+. +++.. .+.+|... |.+++|+|||++||+++.| |+|++||+.+
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~~~d-----------g~i~iw~~~~ 380 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----VLYSALSPDGRILSTAASD-----------ENLKFWRVYD 380 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----CCEEEECTTSSEEEEECTT-----------SEEEEEECCC
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCC-----EEEEEECCCCCEEEEEeCC-----------CcEEEEECCC
Confidence 9999 55 9999999996 66544 47788876 7999999999999998764 9999999999
Q ss_pred CeEEEEecCCC
Q 016446 316 GKCLAKINATN 326 (389)
Q Consensus 316 g~~l~tl~gH~ 326 (389)
++++..+..+.
T Consensus 381 ~~~~~~~~~~~ 391 (401)
T 4aez_A 381 GDHVKRPIPIT 391 (401)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 99988765544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=303.41 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=228.1
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+.++++++.|++|++||.++|+++..+.++ ..+.+++|+|+|+.|+.+ ++.| ..+++||+.+|++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~---~~~d------~~i~v~d~~~~~~---- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVA---NAHS------NDVSIIDTATNNV---- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEE---EGGG------TEEEEEETTTTEE----
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEE---CCCC------CeEEEEECCCCeE----
Confidence 356889999999999999999999999976 458999999999987442 4466 7899999988876
Q ss_pred eeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
+........+..++|+ |||++| ++++.|++|++||+.+++++..+. +..+.+++|+ +|+.|+.+. +.|++|++
T Consensus 67 -~~~~~~~~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~ 142 (391)
T 1l0q_A 67 -IATVPAGSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSV 142 (391)
T ss_dssp -EEEEECSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEE
T ss_pred -EEEEECCCCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEe--CCCCEEEE
Confidence 2221222367789998 899977 566678999999999999988776 5689999999 577775443 45689999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEE-EEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~-~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s- 247 (389)
||+.+|+++.++..| ..+..++|+ |++..++ +++.|++|++||+++++++..+.. ...+..++|+|+|++|++++
T Consensus 143 ~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 143 INTVTKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EETTTTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEec
Confidence 999999999999865 556899997 6777774 567899999999999999888764 45899999999999888774
Q ss_pred ---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 248 ---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 248 ---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
|++|++||+. ++++.++..|.. +.+++|+|||++| ++++. |++|++||+.+|++++++
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~-----------d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------XNTVSVIDTATNTITATM 282 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEE
T ss_pred CcCCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCC-----------CCEEEEEECCCCcEEEEE
Confidence 7899999997 999999988764 5899999999988 45443 599999999999999999
Q ss_pred cCCC
Q 016446 323 NATN 326 (389)
Q Consensus 323 ~gH~ 326 (389)
..|.
T Consensus 283 ~~~~ 286 (391)
T 1l0q_A 283 AVGK 286 (391)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 9886
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=315.57 Aligned_cols=282 Identities=15% Similarity=0.258 Sum_probs=237.6
Q ss_pred EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeE
Q 016446 28 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFV 106 (389)
Q Consensus 28 W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v 106 (389)
|....-+....+.+|....+.+ ++++|+.|++ ++.| ..+++|++.+|++ +.. ..+.+.+.++
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~~--~~~~g~~l~s----g~~d------g~i~vwd~~~~~~-----~~~~~~h~~~v~~~ 165 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVITC--LQFCGNRIVS----GSDD------NTLKVWSAVTGKC-----LRTLVGHTGGVWSS 165 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEEE--EEEETTEEEE----EETT------SCEEEEETTTCCE-----EEECCCCSSCEEEE
T ss_pred ccCCCcceeEEecccCCCcEEE--EEEcCCEEEE----EECC------CcEEEEECCCCcE-----EEEEcCCCCCEEEE
Confidence 4443344567888886444554 5667999999 4577 8899999998886 222 2355667789
Q ss_pred EEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 107 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 107 ~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
+|+ +.+|++|+.|++|++||+.+++++.++. ...|.+++|++ ..+++++ .|++|++||+.+|+++.++.+|
T Consensus 166 ~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 166 QMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGS---RDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEE---TTSEEEEEESSSCCEEEEEECC
T ss_pred Eec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-CEEEEEe---CCCEEEEEECCCCcEEEEEcCC
Confidence 996 5699999999999999999999998886 46899999974 4576764 4589999999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
...+..++| ++..+++++.|++|++||+++++++.++.+|...|.+++| ++++|++++ |++|++||++ ++++.
T Consensus 239 ~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 239 VAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp SSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred cccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 999999988 5789999999999999999999999999999999999999 899999998 9999999996 99999
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
++.+|... +.++.+ ++++|++|+.| |+|++||+.+++++.++.+|..
T Consensus 314 ~~~~~~~~-----v~~~~~--~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~--------------- 360 (445)
T 2ovr_B 314 TLTGHQSL-----TSGMEL--KDNILVSGNAD-----------STVKIWDIKTGQCLQTLQGPNK--------------- 360 (445)
T ss_dssp EECCCCSC-----EEEEEE--ETTEEEEEETT-----------SCEEEEETTTCCEEEEECSTTS---------------
T ss_pred EEcCCccc-----EEEEEE--eCCEEEEEeCC-----------CeEEEEECCCCcEEEEEccCCC---------------
Confidence 99999876 566655 78899999865 9999999999999999998431
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+...|.+++|+ ++.|++|+.||+|++||.
T Consensus 361 ----------------~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 361 ----------------HQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ----------------CSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred ----------------CCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 11589999996 589999999999999983
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=321.31 Aligned_cols=264 Identities=14% Similarity=0.285 Sum_probs=228.1
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
...|.++.| +|+.|++ ++.| ..+++||+.+++.. ..+ ..+...+.+++| ++++|++|+.|+
T Consensus 133 ~~~v~~~~~--d~~~l~~----g~~d------g~i~iwd~~~~~~~---~~~-~~h~~~v~~l~~---~~~~l~sg~~dg 193 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVS----GLRD------NTIKIWDKNTLECK---RIL-TGHTGSVLCLQY---DERVIITGSSDS 193 (435)
T ss_dssp CCCEEEEEC--CSSEEEE----EESS------SCEEEEESSSCCEE---EEE-CCCSSCEEEEEC---CSSEEEEEETTS
T ss_pred CCcEEEEEE--CCCEEEE----EeCC------CeEEEEeCCCCeEE---EEE-cCCCCcEEEEEE---CCCEEEEEcCCC
Confidence 357888776 8999999 4577 88999999888762 112 234445566666 688999999999
Q ss_pred eEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE---EEEeecCCceeEEEEEecCC
Q 016446 124 IYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~~~~~~~~v~f~~~~~ 198 (389)
+|++||+.+++++.++. ...|.+++|+++ ++++++ .|++|++||+.+++++ ..+.+|...+..++| ++
T Consensus 194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~ 266 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DD 266 (435)
T ss_dssp CEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ET
T ss_pred eEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEee---CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CC
Confidence 99999999999998886 468999999865 676764 4589999999998866 778889899999998 47
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCe
Q 016446 199 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 276 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v 276 (389)
..+++++.|++|++||+++++++.++.+|...|.+++| ++++|++++ |++|++||++ |+++.++.+|... |
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-----v 339 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----V 339 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----E
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc-----E
Confidence 89999999999999999999999999999999999998 578999998 9999999997 9999999999887 7
Q ss_pred eEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---------EEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---------~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.+++| ||++|++|+.| |+|++||+.+++ ++.++.+|.
T Consensus 340 ~~~~~--~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--------------------- 385 (435)
T 1p22_A 340 RCIRF--DNKRIVSGAYD-----------GKIKVWDLVAALDPRAPAGTLCLRTLVEHS--------------------- 385 (435)
T ss_dssp EEEEC--CSSEEEEEETT-----------SCEEEEEHHHHTSTTSCTTTTEEEEECCCS---------------------
T ss_pred EEEEe--cCCEEEEEeCC-----------CcEEEEECCCCCCccccccchheeeccCCC---------------------
Confidence 89998 89999999875 999999998887 999999998
Q ss_pred cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++++| ||+.|+||+.||+|++||.
T Consensus 386 -------------~~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 386 -------------GRVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp -------------SCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred -------------CCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 58999999 8899999999999999983
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=319.94 Aligned_cols=275 Identities=11% Similarity=0.139 Sum_probs=228.1
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
..|..+.|.+++||+++.||+|++||..+++++.++.+|. ..|.+++| +++.|++ ++.| ..+++|++
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s----g~~d------g~i~vwd~ 200 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCLQY--DERVIIT----GSSD------STVRVWDV 200 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEEEC--CSSEEEE----EETT------SCEEEEES
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEEEE--CCCEEEE----EcCC------CeEEEEEC
Confidence 4588888889999999999999999999999999999875 89999999 8899999 4577 88999999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE---EEec--CCcEEEEEEcCCceEEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l---~tl~--~~~V~~vafS~g~~la~~ 158 (389)
.+|+.. ..+ ..+...+.+++|+ +.+|++|+.|++|++||+.+++++ ..+. ...|.+++| ++++|+++
T Consensus 201 ~~~~~~--~~~--~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~ 272 (435)
T 1p22_A 201 NTGEML--NTL--IHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSA 272 (435)
T ss_dssp SSCCEE--EEE--CCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEE
T ss_pred CCCcEE--EEE--cCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEE
Confidence 998862 111 2344556778886 359999999999999999888754 4443 468999999 77788877
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+ .|++|++||+.++++++++.+|...+..++|. +..+++++.|++|++||+++++++.++.+|...|.+++|
T Consensus 273 ~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 273 S---GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp E---TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred e---CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 4 45899999999999999999999999988884 789999999999999999999999999999999999999
Q ss_pred CCcEEEEEc-CCeEEEEeCC-Cc---------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 ENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~-G~---------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
++++|++++ ||+|++||+. ++ ++.++.+|..+ |.+++| ||++|++|+. ||+
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~s~s~-----------Dg~ 406 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------DDT 406 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------SSE
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-----eEEEEe--CCCEEEEEeC-----------CCE
Confidence 889999998 9999999985 65 89999999987 789999 8999999875 599
Q ss_pred EEEEeCCCCeEEEEecCC
Q 016446 308 INVSSILTGKCLAKINAT 325 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH 325 (389)
|+|||+.++........+
T Consensus 407 i~iwd~~~~~~~~~~~~~ 424 (435)
T 1p22_A 407 ILIWDFLNDPAAQAEPPR 424 (435)
T ss_dssp EEEEC-------------
T ss_pred EEEEECCCCCCcccCCCC
Confidence 999999987776555443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=315.83 Aligned_cols=279 Identities=11% Similarity=0.094 Sum_probs=222.4
Q ss_pred cccEEEEEee---ccEEEEEecCceEEEEeccc---ceeee-eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceee
Q 016446 3 RTKVIEIVAA---RDIVFALAHSGVCAAFSRET---NRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 75 (389)
Q Consensus 3 ~~~v~~i~~~---~~~~a~~~~~gtiklW~~~t---g~~l~-tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~ 75 (389)
...|..|.|+ +++||+++.||+|++|++.+ +++.. .+...|...|.+|+|+|+++.|++ ++.|
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~s~d------ 132 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAV----SSKD------ 132 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEE----EETT------
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEE----EeCC------
Confidence 4679999998 57999999999999999987 55332 333235689999999999999999 4577
Q ss_pred eeeeEeEec---cCCCCCcce---eEeee-----cccCceeEE--EecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--
Q 016446 76 RSTKIEYIR---RGKPDSGFA---LFESE-----SLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-- 140 (389)
Q Consensus 76 ~~~~l~~i~---~g~~~~~~~---l~~~~-----~~~~~~~v~--Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-- 140 (389)
..+++|++. .|+...... +.... ....+..++ |+ |++++|++++.|++|++||+.+++++.++.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 789999984 666521111 10000 112223344 54 789999999999999999999999998885
Q ss_pred --CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEe---cCCCeEEEEeCCCcEEEE
Q 016446 141 --DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIE---QFNEKLLVKQENENLQIL 213 (389)
Q Consensus 141 --~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~---~~~~~l~~~s~D~tIklW 213 (389)
...|.+++|+ ++.+|++++ .|++|++||++++++++++. .|...+..++|.+ +++..+++++.|++|+||
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGT---TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEE---TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEc---CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 3689999999 588888774 45899999999999999997 6777889997763 345578888999999999
Q ss_pred ECCCCeEEEEcccC--------------------------CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec
Q 016446 214 DVRNAELMEVSRTE--------------------------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 265 (389)
Q Consensus 214 d~~tg~~~~~l~gh--------------------------~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~ 265 (389)
|++++++++++.+| ...|++++|+ ++++|++++ |++|++||+. +++++++.
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 99999999888754 4557788888 779999999 9999999996 99988888
Q ss_pred c-------------------------------------CcCCcCCCCeeEEEECCC--CCEEEEEecCCCcccccCCCCC
Q 016446 266 D-------------------------------------HLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 266 g-------------------------------------h~~~~~~~~v~sv~fSpd--G~~laS~s~D~~~~~~~~s~D~ 306 (389)
+ |... |++++|+|+ +.+|+||+.| |
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----I~~i~~~~~~~~~~l~s~~~d-----------G 431 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI-----INSISTCEVDETPLLVACDNS-----------G 431 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCC-----EEEEEEEESSSSEEEEEEETT-----------S
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccc-----eeeEeeeccCCceEEEEEcCC-----------c
Confidence 7 4443 899999998 8899999765 9
Q ss_pred eEEEEe
Q 016446 307 SINVSS 312 (389)
Q Consensus 307 tIklWd 312 (389)
+||||+
T Consensus 432 ~I~iw~ 437 (437)
T 3gre_A 432 LIGIFQ 437 (437)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=304.15 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=204.3
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCC--CCeEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEE
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~--~g~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklW 170 (389)
.|...+.+++|+ |||++||+|+.|++|+|||+. +++++.++. ...|.+++|+ | +.+|++++ .|++|++|
T Consensus 9 ~h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~v~iw 84 (379)
T 3jrp_A 9 AHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDGKVLIW 84 (379)
T ss_dssp ECCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSCEEEE
T ss_pred CCcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec---cCCEEEEE
Confidence 455667889998 899999999999999999998 556777775 4689999998 5 78998874 45899999
Q ss_pred EcCCCe--EEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCCe--EEEEcccCCCceEEEEEcC------
Q 016446 171 SIEDGT--VLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY------ 238 (389)
Q Consensus 171 d~~tG~--~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~v~sv~fsp------ 238 (389)
|+.+++ ++..+..|...+..++|+ |+ +..+++++.|++|++||+.+++ ....+.+|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 999998 888888899999999998 56 7889999999999999999884 4556789999999999999
Q ss_pred -------CCcEEEEEc-CCeEEEEeCC-Cc----EEEEeccCcCCcCCCCeeEEEECCC---CCEEEEEecCCCcccccC
Q 016446 239 -------ENQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWME 302 (389)
Q Consensus 239 -------dg~~laS~s-D~tIklWd~~-G~----~l~tl~gh~~~~~~~~v~sv~fSpd---G~~laS~s~D~~~~~~~~ 302 (389)
++++|++++ |++|++||+. ++ ++.++.+|..+ |.+++|+|| |++||+++.|
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~l~s~~~d-------- 230 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQD-------- 230 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEETT--------
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-----EeEEEECCCCCCCCeEEEEeCC--------
Confidence 799999998 9999999985 43 66789999887 899999999 9999999875
Q ss_pred CCCCeEEEEeCCCCe---EEEEecC--CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 303 GSAGSINVSSILTGK---CLAKINA--TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 303 s~D~tIklWd~~tg~---~l~tl~g--H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
|+|+|||+.+++ ....+.. |. ..|++++|+|||+.||+
T Consensus 231 ---g~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------------~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 231 ---RTCIIWTQDNEQGPWKKTLLKEEKFP----------------------------------DVLWRASWSLSGNVLAL 273 (379)
T ss_dssp ---SCEEEEEESSTTSCCEEEESSSSCCS----------------------------------SCEEEEEECSSSCCEEE
T ss_pred ---CEEEEEeCCCCCccceeeeeccccCC----------------------------------CcEEEEEEcCCCCEEEE
Confidence 999999999874 2222222 43 58999999999999999
Q ss_pred ecCCCcEEEcc
Q 016446 378 GNRHGLVHVWS 388 (389)
Q Consensus 378 gs~D~tIrlW~ 388 (389)
++.||+|++|+
T Consensus 274 ~~~dg~i~iw~ 284 (379)
T 3jrp_A 274 SGGDNKVTLWK 284 (379)
T ss_dssp EESSSSEEEEE
T ss_pred ecCCCcEEEEe
Confidence 99999999997
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=308.41 Aligned_cols=311 Identities=11% Similarity=0.083 Sum_probs=245.1
Q ss_pred EecCceEEEEecc--cc--eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 19 LAHSGVCAAFSRE--TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 19 ~~~~gtiklW~~~--tg--~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
+++++.++||.++ ++ +.+..+..+ ..+.+++|+|++..+++ ++.+ ..+++||+.+|+.......
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~----~~~~------~~i~~~d~~~g~~~~~~~~ 162 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTG--FQPKSVRFIDNTRLAIP----LLED------EGMDVLDINSGQTVRLSPP 162 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECS--SCBCCCEESSSSEEEEE----BTTS------SSEEEEETTTCCEEEECCC
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCC--CCceEEEEeCCCeEEEE----eCCC------CeEEEEECCCCeEeeecCc
Confidence 4555645665543 35 777777764 45669999996666665 5566 7899999998886211000
Q ss_pred Ee-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 95 FE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 95 ~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
-. ..+.+.+..++|+ |+|+++++++.|++|++||+.+++++.++. ...+.+++|+ +|.++++++ +.|++|++|
T Consensus 163 ~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~ 239 (433)
T 3bws_A 163 EKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVI 239 (433)
T ss_dssp HHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEEE
T ss_pred ccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEEE
Confidence 00 1234456679996 899999999999999999999999888875 5689999999 577776553 346899999
Q ss_pred EcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe--------CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc-
Q 016446 171 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ- 241 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s--------~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~- 241 (389)
|+.+|+++.++..+ ..+..++|+ |++..+++++ .|++|++||+.+++++..+ .|...+..++|+|+|+
T Consensus 240 d~~~~~~~~~~~~~-~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 240 DRKTKLEIRKTDKI-GLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENK 316 (433)
T ss_dssp ETTTTEEEEECCCC-SEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTE
T ss_pred ECCCCcEEEEecCC-CCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCE
Confidence 99999999998865 568899998 7788888877 4899999999999988775 4666899999999996
Q ss_pred EEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc----ccccCCCCCeEEEEeCCC
Q 016446 242 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE----DQWMEGSAGSINVSSILT 315 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~----~~~~~s~D~tIklWd~~t 315 (389)
++++++ |++|++||++ ++++..+. |... +.+++|+|||++|++++.+... --.+++.||+|++||+.+
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK-----PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CSSS-----EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec-CCCC-----CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 556667 9999999997 88888886 4433 7899999999999998865210 014455689999999999
Q ss_pred CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC-CCcEEEcc
Q 016446 316 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 388 (389)
Q Consensus 316 g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~-D~tIrlW~ 388 (389)
++++..+.++. .+.+++|+|||+.|++++. |++|++|+
T Consensus 391 ~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 391 DTVKEFWEAGN-----------------------------------QPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp TEEEEEEECSS-----------------------------------SEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CcEEEEecCCC-----------------------------------CCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 99999998754 7899999999999998775 99999997
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=294.28 Aligned_cols=256 Identities=13% Similarity=0.164 Sum_probs=210.8
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC--CCeE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV--NGKV 115 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p--dG~~ 115 (389)
+.+| .+.|.+++|+|+|+.||++ +.| ..+++|++..+.... ..+.. ..+...+.+++|+ | ||++
T Consensus 7 ~~gH-~~~v~~~~~~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~d~~~ 73 (351)
T 3f3f_A 7 DSGH-DDLVHDVVYDFYGRHVATC----SSD------QHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWA-SPEYGRI 73 (351)
T ss_dssp ECCC-SSCEEEEEECSSSSEEEEE----ETT------SEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEEC-CGGGCSE
T ss_pred Cccc-ccceeEEEEcCCCCEEEEe----eCC------CeEEEEECCCCCCcc-eecceeccCCCcEEEEEEc-CCCCCCE
Confidence 4555 5999999999999999994 577 899999998765311 11111 2455667889998 6 6999
Q ss_pred EEEecCCCeEEEEeCCCC---------eEEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 116 LTYSAQDSIYKVFDLKNY---------TMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g---------~~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
|++++.|++|++||+.++ +++.++. ...|.+++|+| +.+|++++ .|++|++||+.++++++++
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG---NDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTCEEEEEECSSTTCTTCC
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec---CCCcEEEecCCChHHhccc
Confidence 999999999999999887 5666765 56899999994 77888774 4589999999999877665
Q ss_pred e-------------ecCCceeEEEEEec--CCCeEEEEeCCCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCC----
Q 016446 182 Y-------------HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYEN---- 240 (389)
Q Consensus 182 ~-------------~~~~~~~~v~f~~~--~~~~l~~~s~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg---- 240 (389)
. .|...+..++|++. .+..+++++.|+.+.+|+...++. +..+.+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 4 57778899999832 378899999999999999988875 78899999999999999999
Q ss_pred cEEEEEc-CCeEEEEeCC-C----------------------------------------------cEEEEeccCcCCcC
Q 016446 241 QLFLTFR-NRTVAVWNFR-G----------------------------------------------ELVTSFEDHLLWHP 272 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G----------------------------------------------~~l~tl~gh~~~~~ 272 (389)
++|++++ |++|++||+. + +++.++.+|...
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-- 308 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE-- 308 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC--
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc--
Confidence 8999999 9999999986 5 788899999887
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe---EEEEecCCC
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATN 326 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~---~l~tl~gH~ 326 (389)
|.+++|+|||++||+++.| |+|+|||+.+++ |+..+..|+
T Consensus 309 ---v~~~~~s~~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~~ 351 (351)
T 3f3f_A 309 ---VWSVSWNLTGTILSSAGDD-----------GKVRLWKATYSNEFKCMSVITAQQ 351 (351)
T ss_dssp ---EEEEEECSSSCCEEEEETT-----------SCEEEEEECTTSCEEEEEEEC---
T ss_pred ---EEEEEEcCCCCEEEEecCC-----------CcEEEEecCcCcchhheeehcccC
Confidence 8999999999999999875 999999999885 566666553
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=341.03 Aligned_cols=254 Identities=9% Similarity=0.040 Sum_probs=206.7
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
..+|.+|+|||||++||| ++.| .+++ +...++. + ..|...++.|+|+ ||| .|+
T Consensus 15 ~~~v~sv~~SpDG~~iAS----as~D------~TV~--d~~~~~~-----l--~gh~~~v~~V~Fs-Pdg-------~~~ 67 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLT----TFPD------ISIG--QPKYAKD-----I--NCNSKNLFHVKEF-PLE-------FEN 67 (588)
T ss_dssp SSSSCCEEECTTSCEEEE----CSSS------EEEE--EECCCSC-----C--SSBGGGTEEEEEE-CCC-------CCC
T ss_pred hccEEEEEECCCCCEEEE----EcCC------ceee--cccccce-----e--cCCCccEEEEEEC-CCC-------Ccc
Confidence 368999999999999999 5688 6766 5455543 2 2455667889998 899 577
Q ss_pred eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC-----ceeEEEEEec
Q 016446 124 IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-----RNKKVDFIEQ 196 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~-----~~~~v~f~~~ 196 (389)
++++|+. ++..+.++. ...|.+|+|| +|++||+++ .|++|+|||.++ ++.++. |.. .+.+|+|+ |
T Consensus 68 ~~~~~~~-~~~~~~~~~~~~~V~~vawSPdG~~LAs~s---~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS-P 139 (588)
T 2j04_A 68 KLDFELA-QQNGLLNSQPVCYPRVCKPSPIDDWMAVLS---NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN-P 139 (588)
T ss_dssp TTTTSCC-CSSCSSTTSCSCCEEEEEECSSSSCEEEEE---TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC-S
T ss_pred eEEEEeC-CCceEeecCCCCcEEEEEECCCCCEEEEEe---CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc-C
Confidence 7777775 333344433 5789999999 599999874 458999999644 888888 655 49999998 8
Q ss_pred CCCeEEEEeCCCcEEEEECCCCe-------EEEEc----ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE---
Q 016446 197 FNEKLLVKQENENLQILDVRNAE-------LMEVS----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--- 260 (389)
Q Consensus 197 ~~~~l~~~s~D~tIklWd~~tg~-------~~~~l----~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~--- 260 (389)
+++.|++++.||+|||||+++++ .++++ .||..+|.+|+|+||| +|+++ |++||+||++ +++
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence 99999999999999999999986 36776 7888999999999999 55555 9999999997 452
Q ss_pred EEEec-cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCC
Q 016446 261 VTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 339 (389)
Q Consensus 261 l~tl~-gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~ 339 (389)
.++|+ +|... |++|+|| |++|||++ |++|||||+.+++......||+
T Consensus 218 ~~tL~~~h~~~-----V~svaFs--g~~LASa~------------~~tIkLWd~~~~~~~~~~~gh~------------- 265 (588)
T 2j04_A 218 SRMIQNASRRK-----ITDLKIV--DYKVVLTC------------PGYVHKIDLKNYSISSLKTGSL------------- 265 (588)
T ss_dssp EEEEECCCSSC-----CCCEEEE--TTEEEEEC------------SSEEEEEETTTTEEEEEECSCC-------------
T ss_pred eeeecccccCc-----EEEEEEE--CCEEEEEe------------CCeEEEEECCCCeEEEEEcCCC-------------
Confidence 46784 77765 8999999 79999986 3899999999888755555898
Q ss_pred CCCccccccccceecccccccCCEEEEEE--CCCCCEEEEecCCCcEEEcc
Q 016446 340 TGKSKKLNKSSYIRSTVGEALEDITSLFY--DEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~V~svaf--Spdg~~LaSgs~D~tIrlW~ 388 (389)
..|++++| ||||+.|+++++||+ |||.
T Consensus 266 ---------------------~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 266 ---------------------ENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp ---------------------SCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred ---------------------ceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 58999999 999999999999999 9996
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=316.50 Aligned_cols=254 Identities=11% Similarity=0.157 Sum_probs=198.7
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-----------EEEEecC--------------CcEEEEEEcC-C
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISD--------------KHVQEIKISP-G 152 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-----------~l~tl~~--------------~~V~~vafS~-g 152 (389)
....|.+|+|+ |||++||+|+.|++|+|||+.+++ ++.++.+ ..|.+|+|+| +
T Consensus 27 ~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 34567789998 899999999999999999998877 4666653 4599999995 4
Q ss_pred --ceEEEEecCCCCeeEEEEEcCCCeEE---------------------------------------EEE-eecCCceeE
Q 016446 153 --IMLLIFNRSSSHVPLKILSIEDGTVL---------------------------------------KVF-YHLLHRNKK 190 (389)
Q Consensus 153 --~~la~~~~~s~d~tiklWd~~tG~~l---------------------------------------~tl-~~~~~~~~~ 190 (389)
.+|++++ .|++|++||+.++++. +.+ .+|...+..
T Consensus 106 ~~~~l~s~s---~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 106 NAAQFLLST---NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp SSSEEEEEE---CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CcceEEEeC---CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 5787764 4689999999886653 233 578999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECC-CCeEEE-------EcccCCCceEEEEEcCCC-cEEEEEc-CCeEEEEeCC-Cc
Q 016446 191 VDFIEQFNEKLLVKQENENLQILDVR-NAELME-------VSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GE 259 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~~~-------~l~gh~~~v~sv~fspdg-~~laS~s-D~tIklWd~~-G~ 259 (389)
++|+ |++..++++ .|++|+|||++ .+++++ .+.+|...|.+++|+|+| ++|++++ |++|++||+. ++
T Consensus 183 ~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 183 ISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 9998 678888887 89999999999 566666 478999999999999999 9999999 9999999997 88
Q ss_pred E----EEEeccCcCCcCC-------CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCC
Q 016446 260 L----VTSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNC 327 (389)
Q Consensus 260 ~----l~tl~gh~~~~~~-------~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~ 327 (389)
+ ++++++|..+... ..|.+++|+|||++|++++. ++|+|||+.+ ++++.++.+|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------------~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY------------LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES------------SEEEEEETTCCSSCSCCEESCGG
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC------------CeEEEEeCCCCccccceeecccc
Confidence 7 7899998751000 02899999999999999863 8999999997 999999999972
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
... .+.. ....+....+.+++|||||++||+|+.|++|++||.
T Consensus 329 ~~~--------------~l~~-----~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 329 LRS--------------KLCS-----LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp GTT--------------THHH-----HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ccc--------------cccc-----cccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 100 0000 000000013556999999999999999999999984
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=314.55 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=172.1
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEE--E---e--cCCcEEEEEEcC---------CceEEEEecCCCCeeEEE
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--S---I--SDKHVQEIKISP---------GIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~--t---l--~~~~V~~vafS~---------g~~la~~~~~s~d~tikl 169 (389)
+.| +|++++||+++.|++|||||+.++++.. . + |.+.|++|+|+| |++||++ +.|+||||
T Consensus 95 ~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~---s~D~tv~~ 170 (393)
T 4gq1_A 95 NSS-PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV---GDDCTLII 170 (393)
T ss_dssp --C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE---ETTSEEEE
T ss_pred eec-CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE---ECCCeEEE
Confidence 445 5899999999999999999999987642 2 2 346899999985 6788876 45699999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEE-------------------------
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEV------------------------- 223 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~------------------------- 223 (389)
||+.+++++..+..|...+.+|+|+ |++ .++++++.|++|||||++++++...
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFR-PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEE-TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EECCCCceeeeecCCCCCcEEEEEC-CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 9999999999888888999999999 555 4688899999999999999876443
Q ss_pred cccCCCceEEEEEc-CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC----------------
Q 016446 224 SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---------------- 284 (389)
Q Consensus 224 l~gh~~~v~sv~fs-pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd---------------- 284 (389)
..+|...|.+++|+ |||++|++++ |++|++||+. +++...+.+|... +..+.|+|+
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEEEccccccccccCcceeEEEc
Confidence 24788899999996 8999999999 9999999997 8888888888764 455555554
Q ss_pred ----CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccccccc
Q 016446 285 ----QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 360 (389)
Q Consensus 285 ----G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
+.++++|+ .||+|+|||+.+|+++.++.+|.
T Consensus 325 ~~~~~~~~~sgs-----------~Dg~V~lwd~~~~~~~~~~~~~~---------------------------------- 359 (393)
T 4gq1_A 325 PRYMDYFATAHS-----------QHGLIQLINTYEKDSNSIPIQLG---------------------------------- 359 (393)
T ss_dssp SSCTTEEEEEET-----------TTTEEEEEETTCTTCCEEEEECS----------------------------------
T ss_pred cCCCCEEEEEEC-----------CCCEEEEEECCCCcEEEEecCCC----------------------------------
Confidence 34556654 46999999999999999999887
Q ss_pred CCEEEEEECCCCCEEEEecCCCc--EEEc
Q 016446 361 EDITSLFYDEERNEIYTGNRHGL--VHVW 387 (389)
Q Consensus 361 ~~V~svafSpdg~~LaSgs~D~t--IrlW 387 (389)
.+|++|+|||||++||+|++||. ||||
T Consensus 360 ~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 360 MPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp SCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 59999999999999999998886 4444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=299.46 Aligned_cols=253 Identities=10% Similarity=0.069 Sum_probs=203.0
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
|+++.++.+|. +.|.+++|+|+|+.||+ ++.| ..++||++..+.. ..+.. ..+...+.+++|+ |
T Consensus 1 G~~~~~~~~h~-~~v~~~~~s~~~~~l~~----~~~d------g~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~-~ 65 (379)
T 3jrp_A 1 GSMVVIANAHN-ELIHDAVLDYYGKRLAT----CSSD------KTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWA-H 65 (379)
T ss_dssp ----CCEEECC-CCEEEEEECSSSSEEEE----EETT------SCEEEEEEETTEE---EEEEEECCCSSCEEEEEEC-C
T ss_pred CCccEEecCCc-ccEEEEEEcCCCCEEEE----EECC------CcEEEEecCCCcc---eeeeEecCCCCcEEEEEeC-C
Confidence 67788899975 99999999999999999 4567 7889999873322 11211 2355567889998 5
Q ss_pred C--CeEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCe--EEEE
Q 016446 112 N--GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT--VLKV 180 (389)
Q Consensus 112 d--G~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~--~l~t 180 (389)
+ +++|++++.|++|++||+.+++ ++..+. ...|.+++|+| +.+|++++ .|++|++||+.+++ ....
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEE
Confidence 6 9999999999999999999997 566664 57899999994 67888774 45899999999884 4556
Q ss_pred EeecCCceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCCe----EEEEcccCCCceEEEEEcCC---Cc
Q 016446 181 FYHLLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYE---NQ 241 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~------------~~~~l~~~s~D~tIklWd~~tg~----~~~~l~gh~~~v~sv~fspd---g~ 241 (389)
+..|...+..++|++. ++..+++++.|++|++||+++++ ++..+.+|...|.+++|+|+ ++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 7788899999999843 57889999999999999998764 66788999999999999999 99
Q ss_pred EEEEEc-CCeEEEEeCC-Cc---EEEEec--cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 242 LFLTFR-NRTVAVWNFR-GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~-G~---~l~tl~--gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+|++++ |++|++||+. ++ ....+. +|... |.+++|+|||++||+++.| |+|+|||+.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~~d-----------g~i~iw~~~ 286 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGGD-----------NKVTLWKEN 286 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEESS-----------SSEEEEEEE
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcCCCCEEEEecCC-----------CcEEEEeCC
Confidence 999999 9999999996 53 333333 35544 8999999999999999865 999999998
Q ss_pred CCeEE
Q 016446 315 TGKCL 319 (389)
Q Consensus 315 tg~~l 319 (389)
++...
T Consensus 287 ~~~~~ 291 (379)
T 3jrp_A 287 LEGKW 291 (379)
T ss_dssp ETTEE
T ss_pred CCCcc
Confidence 65443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=292.50 Aligned_cols=282 Identities=7% Similarity=0.040 Sum_probs=229.1
Q ss_pred cccEEEEEee-c----cEEEEEecCceEEEEeccc-ceee-eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceee
Q 016446 3 RTKVIEIVAA-R----DIVFALAHSGVCAAFSRET-NRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 75 (389)
Q Consensus 3 ~~~v~~i~~~-~----~~~a~~~~~gtiklW~~~t-g~~l-~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~ 75 (389)
...|..|.|+ . ++||+++.||+|++|++++ ++.+ ..+.+| ...|.+++|+|+|+.|+++ +.|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~----~~d------ 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-TGPVLDVCWSDDGSKVFTA----SCD------ 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-SSCEEEEEECTTSSEEEEE----ETT------
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-cCCEEEEEECcCCCEEEEE----cCC------
Confidence 4689999999 2 7999999999999999987 7776 777876 4899999999999999994 577
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEE--ecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEcCC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~F--s~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~g 152 (389)
..+++|++..+++ +....+...+.+++| + |+|++|++++.|++|++||+.+++++.++. ...+.++.+.+.
T Consensus 108 g~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 3mmy_A 108 KTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181 (368)
T ss_dssp SEEEEEETTTTEE-----EEEEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred CcEEEEEcCCCCc-----eeeccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence 8999999988875 222345566788999 7 899999999999999999999999888887 467888888855
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCe----EEEEeCCCcEEEEECCCC---eEEEE
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNA---ELMEV 223 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~----l~~~s~D~tIklWd~~tg---~~~~~ 223 (389)
..+ ++. .|+.+++|++.++....... .+.+....+.+. +.... +++++.|++|++||+..+ +++..
T Consensus 182 ~~~-~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 182 MAV-VAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp EEE-EEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred eeE-EEe---CCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 444 443 34799999998866544332 233455666665 33333 888999999999999988 66788
Q ss_pred cccCCC------------ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 224 SRTEFM------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 224 l~gh~~------------~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
+.+|.. .|.+++|+|+|++|++++ |++|++||++ ++++.++.+|..+ |.+++|||||++||
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP-----ISACCFNHNGNIFA 331 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC-----EEEEEECTTSSCEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC-----ceEEEECCCCCeEE
Confidence 888887 799999999999999998 9999999997 9999999999887 89999999999999
Q ss_pred EEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+++.| +.+..+++|+.+..+.+
T Consensus 332 ~~s~d--------~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 332 YASSY--------DWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEECC--------CSTTCGGGCCTTSCCEE
T ss_pred EEecc--------cccccccccCCCcccee
Confidence 99876 23455666666655444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=306.95 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=199.4
Q ss_pred CceeEEEecCCCeEE-EEecCCCeEEEEeCC--CCeEEEEec----CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 102 WPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~--~g~~l~tl~----~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
.+.+++|+ |||++| |+++.|++|+|||+. +++++..+. ...|.+++|+ +|.+|++++. |+.|++|++.
T Consensus 104 ~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDVYSIDIN 179 (450)
T ss_dssp CEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred ceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcEEEEecC
Confidence 57789998 899996 999999999999998 888887763 4689999999 5888888743 5899999999
Q ss_pred CCeEEE----EEeecCCceeEEEEEecC---CCeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEE
Q 016446 174 DGTVLK----VFYHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 174 tG~~l~----tl~~~~~~~~~v~f~~~~---~~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS 245 (389)
++++.. ++.+|...+..++|+ |+ +..|++++.|++|+|||+.+++++.. +.+|...|.+++|+ ||++|++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 988665 888999999999999 66 66888899999999999999999887 77999999999999 9999999
Q ss_pred Ec-CCeEEEEeCC-CcEEEEeccCcC-----------C---------cCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 246 FR-NRTVAVWNFR-GELVTSFEDHLL-----------W---------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 246 ~s-D~tIklWd~~-G~~l~tl~gh~~-----------~---------~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
++ |++|+|||+. |+++.++..|.. + .....|.+++|+|||++|++++.+
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--------- 328 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA--------- 328 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT---------
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC---------
Confidence 99 9999999997 999999875420 0 011237899999999999999732
Q ss_pred CCCeEEEEeC--CCC---eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe
Q 016446 304 SAGSINVSSI--LTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 304 ~D~tIklWd~--~tg---~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
|++|+|||+ .++ +++.++.+|. .|++++|+|++.+++.+
T Consensus 329 -d~~i~iw~~~~~~~~~l~~~~~~~~~~-----------------------------------~v~~~~~~~~~~~v~~~ 372 (450)
T 2vdu_B 329 -TKCIIILEMSEKQKGDLALKQIITFPY-----------------------------------NVISLSAHNDEFQVTLD 372 (450)
T ss_dssp -CSEEEEEEECSSSTTCEEEEEEEECSS-----------------------------------CEEEEEEETTEEEEEEC
T ss_pred -CCeEEEEEeccCCCCceeeccEeccCC-----------------------------------ceEEEEecCCcEEEEEe
Confidence 599999999 777 8889998884 79999999976555555
Q ss_pred cC------CCcEEEcc
Q 016446 379 NR------HGLVHVWS 388 (389)
Q Consensus 379 s~------D~tIrlW~ 388 (389)
+. +..|++|.
T Consensus 373 ~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 373 NKESSGVQKNFAKFIE 388 (450)
T ss_dssp CTTCCSSCCCSEEEEE
T ss_pred cccCCCCCCcceEEEE
Confidence 54 55688885
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=307.08 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=222.8
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEeeecccCceeEEEecC-CCeEEEEecCCCe
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSI 124 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~t 124 (389)
...++++|+...++.+ ++.| ..++||++.. |+.......+ ..+...+.+++|+ | ++++||+|+.|++
T Consensus 37 ~~~~~~~~~~~~~~~~---~~~~------g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~-p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 37 SGFCAVNPKFMALICE---ASGG------GAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWC-PHNDNVIASGSEDCT 105 (402)
T ss_dssp SCSEEECSSEEEEEBC---CSSS------CCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEEC-TTCTTEEEEEETTSE
T ss_pred CCcEEECCCeEEEEEE---EcCC------CEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeC-CCCCCEEEEEeCCCe
Confidence 3458889977654431 4566 7899999843 3321111122 2455667889998 7 9999999999999
Q ss_pred EEEEeCCCC-------eEEEEec--CCcEEEEEEcC-C-ceEEEEecCCCCeeEEEEEcCCCeEEEEE--eecCCceeEE
Q 016446 125 YKVFDLKNY-------TMLYSIS--DKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLHRNKKV 191 (389)
Q Consensus 125 iklWdl~~g-------~~l~tl~--~~~V~~vafS~-g-~~la~~~~~s~d~tiklWd~~tG~~l~tl--~~~~~~~~~v 191 (389)
|+|||+.++ +++.++. ...|.+++|+| + .+|++++ .|++|++||+.+|+++.++ ..|...+..+
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 999999988 5555554 57899999995 4 4787764 4589999999999999999 7899999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-ccCCCc-eEEEEEcCCCcEEEEE---c-CCeEEEEeCC-CcE-EEE
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT-PSAFIFLYENQLFLTF---R-NRTVAVWNFR-GEL-VTS 263 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-~gh~~~-v~sv~fspdg~~laS~---s-D~tIklWd~~-G~~-l~t 263 (389)
+|+ |++..+++++.|++|++||+++++++..+ .+|... +..++|+|+|++|+++ + |++|++||+. ++. +..
T Consensus 183 ~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 183 DWS-RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp EEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred EEC-CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE
Confidence 998 68899999999999999999999999998 789876 8999999999999999 6 9999999996 553 333
Q ss_pred ec-cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-EEEecCCCCCCCcccccCCCCCC
Q 016446 264 FE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 264 l~-gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
+. +|... |..++|+|||++|+.++. .|++|++||+.+++. +..+.+|..
T Consensus 262 ~~~~~~~~-----v~~~~~s~~~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~~~-------------- 312 (402)
T 2aq5_A 262 QELDTSSG-----VLLPFFDPDTNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMFSS-------------- 312 (402)
T ss_dssp EECCCCSS-----CEEEEEETTTTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEECC--------------
T ss_pred EeccCCCc-----eeEEEEcCCCCEEEEEEc----------CCCeEEEEEecCCCcceEeeccccc--------------
Confidence 33 34443 799999999999975542 369999999999884 777777651
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
...|.+++|+|||+.+++ .|+.+|+|+
T Consensus 313 ------------------~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 313 ------------------KESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp ------------------SSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred ------------------CCcccceEEeccccccee--cceeEEEEE
Confidence 158999999999999875 567999997
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=298.34 Aligned_cols=227 Identities=10% Similarity=0.115 Sum_probs=188.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+...+.+|+|+ |||++||+|+.| .++|||+.+++++...+...+..++++ ++..++.. ++.|++|+|||+.+|++
T Consensus 18 h~~~V~~v~fs-~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 18 VSNPVTDYEFN-QDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV--TGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp -CCCCCEEEEC-TTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEE--CSSTTEEEEEETTTTEE
T ss_pred CCCceEEEEEC-CCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEE--ECCccEEEEEECCCCcE
Confidence 44567889998 999999999876 589999999988877665567788888 56677554 34468999999999999
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEEcccCCCceEEEEEcCCCcEEEE--Ec-CCeEEE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLT--FR-NRTVAV 253 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg-~~~~~l~gh~~~v~sv~fspdg~~laS--~s-D~tIkl 253 (389)
+.++. |...+..+.|+ ++.++++ .|++|+|||+.++ ++++++.. ....++|+| +++|. ++ ||+|++
T Consensus 94 ~~~~~-~~~~v~~v~~~---~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLS---REFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EEEEE-CSSCEEEEEEC---SSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred EEEEE-CCCceEEEEEc---CCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence 99998 45788999986 3344443 5889999999998 77777665 555678888 55655 46 999999
Q ss_pred EeCC-Cc----------------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe-EEEEeCCC
Q 016446 254 WNFR-GE----------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILT 315 (389)
Q Consensus 254 Wd~~-G~----------------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t-IklWd~~t 315 (389)
||+. ++ ++.++.+|... |.+++|||||++|||||.| ++ |||||+.+
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~-----v~~~~~s~~g~~l~s~s~d-----------~~~v~iwd~~~ 227 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP-----IKMVRLNRKSDMVATCSQD-----------GTIIRVFKTED 227 (355)
T ss_dssp EECCC------------------CCEEECCCSSC-----EEEEEECTTSSEEEEEETT-----------CSEEEEEETTT
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCc-----eEEEEECCCCCEEEEEeCC-----------CCEEEEEECCC
Confidence 9997 55 37899999987 8999999999999999875 88 99999999
Q ss_pred CeEEEEec-C-CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 316 GKCLAKIN-A-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 316 g~~l~tl~-g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
|+++.+++ | |. ..|++++|||||++||+|+.|++|++||.
T Consensus 228 ~~~~~~~~~g~h~----------------------------------~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 228 GVLVREFRRGLDR----------------------------------ADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CCEEEEEECTTCC----------------------------------SCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CcEEEEEEcCCCC----------------------------------CcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 99999998 6 87 59999999999999999999999999983
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=286.09 Aligned_cols=258 Identities=10% Similarity=0.093 Sum_probs=216.2
Q ss_pred ecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCc
Q 016446 66 ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKH 143 (389)
Q Consensus 66 ~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~ 143 (389)
++.| ..+++|++.+|++ +.....-..+.+++|+ |||++| ++++.|++|++||+.+++++.++. +..
T Consensus 8 ~~~d------~~v~v~d~~~~~~-----~~~~~~~~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 75 (391)
T 1l0q_A 8 NSES------DNISVIDVTSNKV-----TATIPVGSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS 75 (391)
T ss_dssp ETTT------TEEEEEETTTTEE-----EEEEECSSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCC------CEEEEEECCCCeE-----EEEeecCCCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC
Confidence 5677 7899999988876 2221222346789998 899876 788899999999999999988886 568
Q ss_pred EEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEE
Q 016446 144 VQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELM 221 (389)
Q Consensus 144 V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg~~~ 221 (389)
|.+++|+ +|++|+++. +.|++|++||+.+|+++..+..| ..+..++|+ |++..+ ++++.|++|++||+.+++++
T Consensus 76 v~~~~~spdg~~l~~~~--~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTN--MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp EEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccceEECCCCCEEEEEE--CCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 9999999 578786663 44589999999999999999865 567899998 677777 45678999999999999999
Q ss_pred EEcccCCCceEEEEEcCCCcEE-EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 016446 222 EVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 298 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~l-aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~ 298 (389)
..+..|. .+..++|+|+|++| ++++ |++|++||+. ++++..+..+. . +.+++|+|||++|++++.+
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~g~~l~~~~~~---- 220 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A-----PSGIAVNPEGTKAYVTNVD---- 220 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E-----EEEEEECTTSSEEEEEEEC----
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C-----ccceEECCCCCEEEEEecC----
Confidence 9988775 57999999999877 6777 9999999997 88888887543 2 6899999999999998742
Q ss_pred cccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE-EE
Q 016446 299 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YT 377 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L-aS 377 (389)
..|++|++||+.+++++..+..|. .+.+++|+|||+.| ++
T Consensus 221 ----~~~~~v~~~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 221 ----KYFNTVSMIDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVA 261 (391)
T ss_dssp ----SSCCEEEEEETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEE
T ss_pred ----cCCCcEEEEECCCCeEEEEEecCC-----------------------------------CccEEEEccCCCEEEEE
Confidence 136999999999999999999876 68899999999987 78
Q ss_pred ecCCCcEEEccC
Q 016446 378 GNRHGLVHVWSN 389 (389)
Q Consensus 378 gs~D~tIrlW~~ 389 (389)
++.|++|++||.
T Consensus 262 ~~~d~~v~v~d~ 273 (391)
T 1l0q_A 262 LSFXNTVSVIDT 273 (391)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCEEEEEEC
Confidence 899999999983
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=311.02 Aligned_cols=319 Identities=9% Similarity=0.072 Sum_probs=249.7
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDS 90 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~ 90 (389)
+.++++.+.|++|++||..+|+++.++..++ . +.+++|||||++|++++ .| ..+++||+ .++++
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-~-~~~v~~spdg~~l~v~~----~d------~~V~v~D~~~~t~~~-- 214 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-A-VHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTK-- 214 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECST-T-EEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEE--
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCc-c-cceEEECCCCCEEEEEC----CC------CeEEEEECcCCCCcE--
Confidence 7889999999999999999999999999655 3 89999999999999954 55 67899998 67665
Q ss_pred cceeEeeecccCceeEEEecC----CCeEEEEecC-CCeEEEEeCCCCeEEEEecC-------------CcEEEEEEcC-
Q 016446 91 GFALFESESLKWPGFVEFDDV----NGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-------------KHVQEIKISP- 151 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~p----dG~~Las~s~-D~tiklWdl~~g~~l~tl~~-------------~~V~~vafS~- 151 (389)
+.+...-..|..++|| | ||++|++++. |++|+|||..+++++.++.. ..|.+++|||
T Consensus 215 ---~~~i~~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 215 ---VAEIKIGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp ---EEEEECCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred ---EEEEecCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 2222234457889998 9 9999998884 89999999999999887752 2699999994
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEE--EEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEccc--
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT-- 226 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~--tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~g-- 226 (389)
+..++++. ..+++|.+||+.++++++ ++. +......++|+ |++.++++++ .|++|++||.++|+++.++..
T Consensus 291 ~~~~~vs~--~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 291 HPEFIVNV--KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSEEEEEE--TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEE--CCCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 66666553 456899999999987766 443 55677899998 7888777654 799999999999999998874
Q ss_pred --CCCceEEEEEcCC-CcEEEEEc--CCeEEEEeCC--------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 227 --EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 227 --h~~~v~sv~fspd-g~~laS~s--D~tIklWd~~--------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
|......+ ++|+ |++++|++ |++|++||.+ +++++++++|... +..|+|||||++|.+++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCCEEEECCT
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCCcEEEecC
Confidence 66555555 4666 88899985 8999999983 6899999999866 589999999999999763
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEE-EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 372 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l-~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg 372 (389)
-+++ ...+++|++||+.+++++ ..|.--+ |..+.++-..|..++|+|||
T Consensus 441 ~~~~----~~~~~~v~v~d~~~~~~~~~~~~v~~--------------------------~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 441 FNPD----ARISQSVAVFDLKNLDAKYQVLPIAE--------------------------WADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp TCSS----HHHHTCEEEEETTCTTSCCEEECHHH--------------------------HHCCCSSCCEEEEEEECSSS
T ss_pred CCCC----cccCceEEEEECCCCCCCeEEeechh--------------------------hcccCCCCCceEeccCCCCC
Confidence 1000 001479999999999988 5552100 00111112689999999999
Q ss_pred CEEEEe-----cCCCcEEEccC
Q 016446 373 NEIYTG-----NRHGLVHVWSN 389 (389)
Q Consensus 373 ~~LaSg-----s~D~tIrlW~~ 389 (389)
++|+.+ +.|++|.+||.
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEET
T ss_pred CEEEEEeecCCCCCCeEEEEEC
Confidence 999966 35899999983
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=301.36 Aligned_cols=224 Identities=8% Similarity=0.067 Sum_probs=191.8
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEc---------CCCeEEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI---------EDGTVLKVF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~---------~tG~~l~tl 181 (389)
+|+++||+|+.|++|++||+++++++.++....|.+++|+|. ++++ +.|++|++|+. .++++++.+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~~s~---s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--IISR---GPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--EEEE---CSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--eEEe---cCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 578999999999999999999999998888778889999987 6665 55689999954 477778777
Q ss_pred e-ecCCceeEEEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEEccc-CCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 182 Y-HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 182 ~-~~~~~~~~v~f~~~--~~~~l~~~s~D~tIklWd~~tg~~~~~l~g-h~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
. +|...+..++|+ | ++.++++++.|++|+|||++++++++...+ |...+.+++|+|||++||+|+ |++|+|||+
T Consensus 121 ~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 121 EVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp ECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred ecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 7 677789999998 6 788999999999999999999999887744 555899999999999999998 999999999
Q ss_pred C-CcEE-EEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccc
Q 016446 257 R-GELV-TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 333 (389)
Q Consensus 257 ~-G~~l-~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~ 333 (389)
+ ++++ .++++ |..+ |.+++|+|||++||+++ | ++|+|||+.+++++.++..+..+.
T Consensus 200 ~~~~~~~~~~~~~h~~~-----v~~l~fs~~g~~l~s~~-~-----------~~v~iwd~~~~~~~~~~~~~~~~~---- 258 (343)
T 3lrv_A 200 SSPDQASSRFPVDEEAK-----IKEVKFADNGYWMVVEC-D-----------QTVVCFDLRKDVGTLAYPTYTIPE---- 258 (343)
T ss_dssp SCTTSCCEECCCCTTSC-----EEEEEECTTSSEEEEEE-S-----------SBEEEEETTSSTTCBSSCCCBC------
T ss_pred CCCCCCccEEeccCCCC-----EEEEEEeCCCCEEEEEe-C-----------CeEEEEEcCCCCcceeeccccccc----
Confidence 7 8887 88998 9877 89999999999999997 3 599999999999887777643100
Q ss_pred ccCCCCCCCccccccccceecccccccCCE--EEEEECCCCCEEEEecC-CCcEEEcc
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDI--TSLFYDEERNEIYTGNR-HGLVHVWS 388 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~svafSpdg~~LaSgs~-D~tIrlW~ 388 (389)
..+ .+++|+|+|++||+|+. |+.|++|+
T Consensus 259 ---------------------------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 259 ---------------------------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ------------------------------CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---------------------------ccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 122 46999999999999998 99999996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=299.98 Aligned_cols=271 Identities=10% Similarity=0.114 Sum_probs=217.4
Q ss_pred EEEecCceEEEEeccc-ce---eeeeeecCCcceEEEEEEee-CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 17 FALAHSGVCAAFSRET-NR---RICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 17 a~~~~~gtiklW~~~t-g~---~l~tl~~~~~~~v~sv~~sp-dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
++++.||+|++|++.+ |+ .+..+.+| ...|.+++|+| +++.|++ ++.| ..++||++..++....
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~~l~s----~s~d------g~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGH-TAPVLDIAWCPHNDNVIAS----GSED------CTVMVWEIPDGGLVLP 119 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCC-SSCEEEEEECTTCTTEEEE----EETT------SEEEEEECCTTCCSSC
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecC-CCCEEEEEeCCCCCCEEEE----EeCC------CeEEEEEccCCCCccc
Confidence 3468899999999854 33 45567776 48999999999 8999999 4577 8899999988854210
Q ss_pred --ceeEe-eecccCceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEe----cCCcEEEEEEc-CCceEEEEecCC
Q 016446 92 --FALFE-SESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSI----SDKHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 92 --~~l~~-~~~~~~~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl----~~~~V~~vafS-~g~~la~~~~~s 162 (389)
..+.. ..+...+..++|+ |+| .+|++++.|++|++||+.+++++.++ +...|.+++|+ +|.+|++++
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 195 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--- 195 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE---
T ss_pred cCCceEEecCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe---
Confidence 11111 2455667889998 888 69999999999999999999999998 35789999999 588888874
Q ss_pred CCeeEEEEEcCCCeEEEEE-eecCCc-eeEEEEEecCCCeEEEE---eCCCcEEEEECCCCeE-EEEc-ccCCCceEEEE
Q 016446 163 SHVPLKILSIEDGTVLKVF-YHLLHR-NKKVDFIEQFNEKLLVK---QENENLQILDVRNAEL-MEVS-RTEFMTPSAFI 235 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl-~~~~~~-~~~v~f~~~~~~~l~~~---s~D~tIklWd~~tg~~-~~~l-~gh~~~v~sv~ 235 (389)
.|++|++||+++|+++.++ ..|.+. +..+.|+ |++..++++ +.|++|++||+++++. +... ..|...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 4589999999999999999 677665 7999998 667777777 6999999999998764 3332 35778899999
Q ss_pred EcCCCcEEE-EEc-CCeEEEEeCC-Cc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 236 FLYENQLFL-TFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 236 fspdg~~la-S~s-D~tIklWd~~-G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
|+|+|++|+ +++ |++|++||+. ++ ++..+..|... ..|.+++|+|||++++++ |+.+|+|
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~---~~v~~~~~sp~~~~~~s~-------------~~~~~~~ 338 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK---ESQRGMGYMPKRGLEVNK-------------CEIARFY 338 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS---SCCSEEEECCGGGSCGGG-------------TEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC---CcccceEEecccccceec-------------ceeEEEE
Confidence 999999986 566 9999999997 66 36677766521 127999999999999864 3799999
Q ss_pred eCCCCeEE
Q 016446 312 SILTGKCL 319 (389)
Q Consensus 312 d~~tg~~l 319 (389)
++.++++.
T Consensus 339 ~l~~~~~~ 346 (402)
T 2aq5_A 339 KLHERKCE 346 (402)
T ss_dssp EEETTEEE
T ss_pred EcCCCcEE
Confidence 99988764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=285.18 Aligned_cols=262 Identities=8% Similarity=0.036 Sum_probs=221.6
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccce---eeeeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~---~l~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~ 76 (389)
...|.+|.|+ +++||+++.||+|++|++.+++ .+..+.+| ...|.+++|+|+|+ .|+++ +.| .
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~----~~d------g 79 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVG----TVQ------G 79 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESSSEEEEEE----ETT------S
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec-CCceEEEEECCCCCcEEEEE----cCC------C
Confidence 3579999999 8899999999999999998777 35556665 48999999999999 99994 467 7
Q ss_pred eeeEeEe-ccCCCCCcceeEeee--cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC---------CeEEEEec-CCc
Q 016446 77 STKIEYI-RRGKPDSGFALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKH 143 (389)
Q Consensus 77 ~~~l~~i-~~g~~~~~~~l~~~~--~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~---------g~~l~tl~-~~~ 143 (389)
.+++|++ ..++. ..+ .. +...+..++|+ | +++|++++.|++|++||+.+ ++++.++. ...
T Consensus 80 ~i~~wd~~~~~~~---~~~--~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 80 EILKVDLIGSPSF---QAL--TNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp CEEEECSSSSSSE---EEC--BSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred eEEEEEeccCCce---Eec--cccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence 8999998 77764 112 23 55567789998 7 99999999999999999987 77666664 578
Q ss_pred EEEEEEcCCceEEEEecCCCCeeEEEEEcCC-CeE--EEEEeecCCceeEEEEEec-CCCeEEEEeCCCcEEEEECCCC-
Q 016446 144 VQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTV--LKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNA- 218 (389)
Q Consensus 144 V~~vafS~g~~la~~~~~s~d~tiklWd~~t-G~~--l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D~tIklWd~~tg- 218 (389)
|.+++|+|+. +++++ .|++|++||+.+ ++. ......|...+..++|+ | ++..+++++.|++|+|||+..+
T Consensus 153 v~~~~~~~~~-l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGM---NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp EEEEEECSSE-EEEEE---STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eEEEEecCCc-EEEEe---CCCeEEEEECCccccccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9999999766 66664 457999999998 654 33444677889999998 6 7899999999999999999987
Q ss_pred -----eEEEEcccCCC---------ceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC-cCCcCCCCeeEEEE
Q 016446 219 -----ELMEVSRTEFM---------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH-LLWHPDCNTNNIYI 281 (389)
Q Consensus 219 -----~~~~~l~gh~~---------~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh-~~~~~~~~v~sv~f 281 (389)
+++..+.+|.. .|.+++|+|+|++|++++ |++|++||+. ++++.++.+| ..+ |.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~- 301 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-----VVKIA- 301 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSE-----EEEEE-
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCC-----ceEec-
Confidence 88888888866 999999999999999998 9999999997 9999999998 776 78999
Q ss_pred CCCCCEEEEEecC
Q 016446 282 TSDQDLIISYCKA 294 (389)
Q Consensus 282 SpdG~~laS~s~D 294 (389)
|||++||+++.|
T Consensus 302 -~~~~~l~s~s~D 313 (342)
T 1yfq_A 302 -CSDNILCLATSD 313 (342)
T ss_dssp -ECSSEEEEEEEC
T ss_pred -CCCCeEEEEecC
Confidence 999999999876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=291.94 Aligned_cols=259 Identities=8% Similarity=0.006 Sum_probs=202.7
Q ss_pred EeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC
Q 016446 52 YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 131 (389)
Q Consensus 52 ~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~ 131 (389)
+.+|++.|++ ++.| ..+++||+.+|+.. .... ...+..++|+ |+ +++++.|++|++|+..
T Consensus 44 ~~~d~~~l~s----g~~D------g~v~iwd~~~~~~~-----~~~~-~~~v~~~~~~-~~---~~s~s~D~~i~~w~~~ 103 (343)
T 3lrv_A 44 MYYDKWVCMC----RCED------GALHFTQLKDSKTI-----TTIT-TPNPRTGGEH-PA---IISRGPCNRLLLLYPG 103 (343)
T ss_dssp SSEEEEEEEE----EEET------TEEEEEEESSSSCE-----EEEE-EECCCTTCCC-CS---EEEECSTTEEEEEETT
T ss_pred hcCCCCEEEE----ECCC------CcEEEEECCCCcEE-----EEEe-cCCceeeeeC-Cc---eEEecCCCeEEEEEcc
Confidence 4568888888 4566 78899999888762 1111 2345678887 66 8999999999999654
Q ss_pred ---------CCeEEEEec---CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEe
Q 016446 132 ---------NYTMLYSIS---DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIE 195 (389)
Q Consensus 132 ---------~g~~l~tl~---~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~ 195 (389)
+++++..+. ...|.+++|+| +.++++++ .|++|++||+++|+++..+. .|...+..++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~- 179 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD---NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH- 179 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE---TTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe---CCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-
Confidence 555555443 35799999997 56777664 56899999999999988875 444578999998
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEE-EEccc-CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEecc---CcC
Q 016446 196 QFNEKLLVKQENENLQILDVRNAELM-EVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED---HLL 269 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~tg~~~-~~l~g-h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~g---h~~ 269 (389)
|++..+++++.|++|+|||+++++++ ..+.+ |...|.+++|+|+|++|++++|++|+|||++ ++++.+++. |..
T Consensus 180 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 180 KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC---
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccc
Confidence 78888999999999999999999988 88888 9999999999999999999996699999997 777665554 443
Q ss_pred CcCCCCee--EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 270 WHPDCNTN--NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 270 ~~~~~~v~--sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
. +. +++|+|+|++||+++.+ |++|+||++.+++.....
T Consensus 260 ~-----~~~~~~~~~~~g~~l~~~s~~----------d~~i~v~~~~~~~~~~~~------------------------- 299 (343)
T 3lrv_A 260 K-----TGTVTYDIDDSGKNMIAYSNE----------SNSLTIYKFDKKTKNWTK------------------------- 299 (343)
T ss_dssp -------CCEEEEECTTSSEEEEEETT----------TTEEEEEEECTTTCSEEE-------------------------
T ss_pred c-----ccceEEEECCCCCEEEEecCC----------CCcEEEEEEcccccceEe-------------------------
Confidence 3 33 59999999999998751 489999998765432222
Q ss_pred cccceecccccccCCEEEEEECC---CCCEEEEecCCCcEEEc
Q 016446 348 KSSYIRSTVGEALEDITSLFYDE---ERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSp---dg~~LaSgs~D~tIrlW 387 (389)
.++..++|+| +++.|++++.|++++++
T Consensus 300 -------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 300 -------------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp -------------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred -------------cCceeEecCccccccceeEEEecCCceEEE
Confidence 2677899999 99999999999999986
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=294.07 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=203.9
Q ss_pred ecccCceeEEEecCC-CeEEEEecCCCeEEEEeCCC----------CeEEEEec--CCcEEEEEEcC-Cc-eEEEEecCC
Q 016446 98 ESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKN----------YTMLYSIS--DKHVQEIKISP-GI-MLLIFNRSS 162 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~----------g~~l~tl~--~~~V~~vafS~-g~-~la~~~~~s 162 (389)
.+.+.|..++|+ |+ +.+||+++.|++|+|||+.+ ++++.++. ...|.+++|+| +. +|+++ +
T Consensus 126 ~h~~~v~~l~~~-p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---~ 201 (430)
T 2xyi_A 126 NHEGEVNRARYM-PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA---S 201 (430)
T ss_dssp EESSCCSEEEEE-TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE---C
T ss_pred cCCCcEEEEEEC-CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE---e
Confidence 456678889999 75 78999999999999999976 56666664 56899999995 55 78776 4
Q ss_pred CCeeEEEEEcCCCeE-------EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEEcccCCCceE
Q 016446 163 SHVPLKILSIEDGTV-------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPS 232 (389)
Q Consensus 163 ~d~tiklWd~~tG~~-------l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg---~~~~~l~gh~~~v~ 232 (389)
.|++|++||+.++.. ...+.+|...+..++|++.++..+++++.|++|++||++++ +++..+.+|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 568999999988433 46777899999999998435677888899999999999987 57888889999999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCe
Q 016446 233 AFIFLYENQ-LFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 233 sv~fspdg~-~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~t 307 (389)
+++|+|+++ +|++++ |++|++||++ ++++.++.+|... |.+++|+|+|+ +||+++.| ++
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~-----v~~i~~sp~~~~~l~s~~~d-----------~~ 345 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE-----IFQVQWSPHNETILASSGTD-----------RR 345 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC-----EEEEEECSSCTTEEEEEETT-----------SC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC-----EEEEEECCCCCCEEEEEeCC-----------Cc
Confidence 999999998 788998 9999999995 5789999999877 89999999995 68888764 89
Q ss_pred EEEEeCCC--------------CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 308 INVSSILT--------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 308 IklWd~~t--------------g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
|+|||+.+ .+++..+.+|. ..|++++|+|+++
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~----------------------------------~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT----------------------------------AKISDFSWNPNEP 391 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS----------------------------------SCEEEEEECSSST
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCC----------------------------------CCceEEEECCCCC
Confidence 99999987 37788888887 5899999999999
Q ss_pred -EEEEecCCCcEEEcc
Q 016446 374 -EIYTGNRHGLVHVWS 388 (389)
Q Consensus 374 -~LaSgs~D~tIrlW~ 388 (389)
+|||++.|++|++|+
T Consensus 392 ~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCEEEeE
Confidence 999999999999997
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=294.30 Aligned_cols=250 Identities=10% Similarity=0.076 Sum_probs=201.3
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCe---EEEEecC--C------------------------------------
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--K------------------------------------ 142 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~---~l~tl~~--~------------------------------------ 142 (389)
..|+|+ |||++|+++ .+++|++||+.+|+ ++.++.. .
T Consensus 8 ~~v~~s-~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 8 QNLLTS-RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CEEEEC-SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEec-CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 469998 899977765 57899999999999 6665541 1
Q ss_pred ------------------cEEEEEEc-CCceE-EEEecCCCCeeEEEEEcC--CCeEEEEEe--ecCCceeEEEEEecCC
Q 016446 143 ------------------HVQEIKIS-PGIML-LIFNRSSSHVPLKILSIE--DGTVLKVFY--HLLHRNKKVDFIEQFN 198 (389)
Q Consensus 143 ------------------~V~~vafS-~g~~l-a~~~~~s~d~tiklWd~~--tG~~l~tl~--~~~~~~~~v~f~~~~~ 198 (389)
.|++++|| +|.+| |++ +.|++|+|||+. +|++++++. .|...+..++|+ |++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~ 161 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA---DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDD 161 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEE---GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTS
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE---CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCC
Confidence 59999999 57776 554 346899999999 999999997 456778999998 788
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEE----EcccCCCceEEEEEcCC---CcEEEEEc-CCeEEEEeCC-CcEEEE-eccCc
Q 016446 199 EKLLVKQENENLQILDVRNAELME----VSRTEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GELVTS-FEDHL 268 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~~----~l~gh~~~v~sv~fspd---g~~laS~s-D~tIklWd~~-G~~l~t-l~gh~ 268 (389)
..|++++.|++|++|++.++++.. .+.+|...|.+++|+|+ +++|++++ |++|++||+. ++++.+ +.+|.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 899999999999999999988655 88999999999999999 99999999 9999999997 888887 66998
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc---CCCCCCCccc
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL---GSSSTGKSKK 345 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~---~~~~~~~~~~ 345 (389)
.+ |.+++|+ ||++|++++.| ++|+|||+.+|+++.++..|... ...... ++...
T Consensus 242 ~~-----v~~~~~s-d~~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----- 298 (450)
T 2vdu_B 242 HF-----VSSICCG-KDYLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLI-KPYLNDQHLAPPRF----- 298 (450)
T ss_dssp SC-----EEEEEEC-STTEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHH-GGGCCTTSBC---------
T ss_pred Cc-----eEEEEEC-CCCEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhh-hhhhhhcccccccc-----
Confidence 77 8999999 99999999865 99999999999999999865310 000000 00000
Q ss_pred cccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEcc
Q 016446 346 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 388 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~ 388 (389)
...........|.+++|+|||++|++++ .|++|+||+
T Consensus 299 ------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 299 ------QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp ------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred ------cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 0000001124799999999999999999 999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=294.13 Aligned_cols=237 Identities=8% Similarity=-0.022 Sum_probs=168.4
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC--------CCeEE
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV--------NGKVL 116 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p--------dG~~L 116 (389)
.+...+++|++..|++ ++.| ++++||++..++......+-. ..|.+.|.+|+|+ | ||++|
T Consensus 91 ~~~~~~~~~~~~~las----~~~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~-p~~~~~~~~d~~~l 159 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLAC----VCQD------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIA-DVYSADNRLAEQVI 159 (393)
T ss_dssp ------CCEEEEEEEE----EETT------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEE-EEECTTCSEEEEEE
T ss_pred CcceeecCCCCCEEEE----EeCC------CcEEEEECCCCccceeeeecccCCCCCceEEEEEc-cccccccCCCCCEE
Confidence 3445566777888888 4577 899999998886522111111 2466678899998 5 89999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cc-eEEEEecCCCCeeEEEEEcCCCeEEEEE-----------
Q 016446 117 TYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVF----------- 181 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~-~la~~~~~s~d~tiklWd~~tG~~l~tl----------- 181 (389)
||||.|+||||||+.++.++..+. ...|.+|+|+| +. +|+++ +.|++|||||+.++++..++
T Consensus 160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG---ERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCCC----------CSCCCS
T ss_pred EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec---CCCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999999999998888765553 57899999996 43 67766 45689999999999876554
Q ss_pred --------------eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC---------
Q 016446 182 --------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--------- 238 (389)
Q Consensus 182 --------------~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp--------- 238 (389)
.+|...+..|.|..+++.++++++.|++|++||+.+++....+.+|...+..+.|+|
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 356677889999988899999999999999999999999888888888888777665
Q ss_pred -----------CCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 239 -----------ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 239 -----------dg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
++.++++++ |++|+|||++ |+++.++.+|..+ |++|+|||||++||+++.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-----V~svafspdG~~LA~as~------------ 379 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-----IVDFCWHQDGSHLAIATE------------ 379 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-----EEEEEECTTSSEEEEEES------------
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-----EEEEEEcCCCCEEEEEeC------------
Confidence 445778888 9999999997 9999888889876 899999999999999975
Q ss_pred CeEEEEeC
Q 016446 306 GSINVSSI 313 (389)
Q Consensus 306 ~tIklWd~ 313 (389)
+.+.||.+
T Consensus 380 ~Gv~lvrL 387 (393)
T 4gq1_A 380 GSVLLTRL 387 (393)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEE
Confidence 35767764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=317.95 Aligned_cols=237 Identities=14% Similarity=0.218 Sum_probs=204.6
Q ss_pred ecccCceeEEEecCCCeEEEEecCCCeEEEEeCC--CCeEEEEec--CCcEEEEEEc-C--CceEEEEecCCCCeeEEEE
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~--~g~~l~tl~--~~~V~~vafS-~--g~~la~~~~~s~d~tiklW 170 (389)
.|.+.+.+++|+ |||++||+|+.||+|+|||+. +++++.++. ...|.+++|+ + +.+|++++ .|++|++|
T Consensus 7 gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---~Dg~I~vw 82 (753)
T 3jro_A 7 AHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDGKVLIW 82 (753)
T ss_dssp -CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---TTSCEEEE
T ss_pred cCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe---CCCeEEEE
Confidence 355667889998 899999999999999999998 456777775 4689999999 5 88998874 45899999
Q ss_pred EcCCCe--EEEEEeecCCceeEEEEEecC--CCeEEEEeCCCcEEEEECCCCe--EEEEcccCCCceEEEEEcC------
Q 016446 171 SIEDGT--VLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY------ 238 (389)
Q Consensus 171 d~~tG~--~l~tl~~~~~~~~~v~f~~~~--~~~l~~~s~D~tIklWd~~tg~--~~~~l~gh~~~v~sv~fsp------ 238 (389)
|+.+|+ ++..+.+|...+..++|+ |+ +..+++++.|++|++||+.++. ....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 999998 888888999999999998 66 7889999999999999999883 4556789999999999999
Q ss_pred -------CCcEEEEEc-CCeEEEEeCC-C----cEEEEeccCcCCcCCCCeeEEEECCC---CCEEEEEecCCCcccccC
Q 016446 239 -------ENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWME 302 (389)
Q Consensus 239 -------dg~~laS~s-D~tIklWd~~-G----~~l~tl~gh~~~~~~~~v~sv~fSpd---G~~laS~s~D~~~~~~~~ 302 (389)
++++|++++ ||+|++||+. + +++.++.+|..+ |.+++|+|+ |++|++++.|
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~~~~l~s~s~D-------- 228 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQD-------- 228 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEESS--------
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-----EEEEEeccCCCCCCEEEEEecC--------
Confidence 699999998 9999999985 5 677899999887 899999999 9999999875
Q ss_pred CCCCeEEEEeCCCCe-----EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 303 GSAGSINVSSILTGK-----CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 303 s~D~tIklWd~~tg~-----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
|+|++||+.+++ .+....+|. ..|++++|+|||+.|++
T Consensus 229 ---g~I~iwd~~~~~~~~~~~~~~~~~~~----------------------------------~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 229 ---RTCIIWTQDNEQGPWKKTLLKEEKFP----------------------------------DVLWRASWSLSGNVLAL 271 (753)
T ss_dssp ---SCEEEEEESSSSSCCBCCBSSSSCCS----------------------------------SCCCCEEECTTTCCEEE
T ss_pred ---CEEEEecCCCCCCcceeEEeccCCCC----------------------------------CceEEEEEcCCCCEEEE
Confidence 999999998875 222223343 58999999999999999
Q ss_pred ecCCCcEEEccC
Q 016446 378 GNRHGLVHVWSN 389 (389)
Q Consensus 378 gs~D~tIrlW~~ 389 (389)
|+.||+|++|+.
T Consensus 272 ~s~Dg~I~vwd~ 283 (753)
T 3jro_A 272 SGGDNKVTLWKE 283 (753)
T ss_dssp ECSSSCEECCBC
T ss_pred EcCCCEEEEEec
Confidence 999999999984
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=275.61 Aligned_cols=273 Identities=10% Similarity=0.071 Sum_probs=223.8
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceeee-----eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRIC-----FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~-----tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
+..+.|+ +.++++++.+++|++||..+|++++ .+.+| ...|++++|+|+|+.+++ ++.| ..+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~s----~~~d------~~v 193 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK-LGFVETISIPEHNELWVS----QMQA------NAV 193 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTT-CCEEEEEEEGGGTEEEEE----EGGG------TEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccccc-CCceeEEEEcCCCEEEEE----ECCC------CEE
Confidence 4456666 6778888889999999999999988 44455 489999999999998888 4566 789
Q ss_pred eEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCce
Q 016446 79 KIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIM 154 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~ 154 (389)
++|++.+++. +.. ..+...+..++|+ |+|++| ++++.|++|++||+.+++++..+. ...+.+++|+ +|.+
T Consensus 194 ~~~d~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 194 HVFDLKTLAY-----KATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp EEEETTTCCE-----EEEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSE
T ss_pred EEEECCCceE-----EEEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCE
Confidence 9999988875 222 1344567789998 899877 566689999999999999988887 4679999999 5778
Q ss_pred EEEEecCC-----CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEEcccCC
Q 016446 155 LLIFNRSS-----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEF 228 (389)
Q Consensus 155 la~~~~~s-----~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~tIklWd~~tg~~~~~l~gh~ 228 (389)
|++++... .|++|++||+.+|+++..+. |...+..++|+ |++..+++ ++.|++|++||++++++++.+. |.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~ 344 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VF 344 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEEC-SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEEC-CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CC
Confidence 88775433 47899999999999988875 44678899997 67766655 5799999999999999988876 66
Q ss_pred CceEEEEEcCCCcEEEEEc-C---------------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 229 MTPSAFIFLYENQLFLTFR-N---------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D---------------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
..+.+++|+|||++|++++ + |+|++||+. ++++..+.++.. +.+++|+|||++|+++
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ------PTGLDVSPDNRYLVIS 418 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS------EEEEEECTTSCEEEEE
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC------CceEEEcCCCCEEEEE
Confidence 7899999999999888775 3 599999996 999999987542 6899999999999987
Q ss_pred ecCCCcccccCCCCCeEEEEeCC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+.+ |++|++|++.
T Consensus 419 ~~~----------d~~i~v~~~~ 431 (433)
T 3bws_A 419 DFL----------DHQIRVYRRD 431 (433)
T ss_dssp ETT----------TTEEEEEEET
T ss_pred ECC----------CCeEEEEEec
Confidence 642 5999999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=286.98 Aligned_cols=209 Identities=12% Similarity=0.089 Sum_probs=158.7
Q ss_pred ceEEEEEEeeC----CCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec
Q 016446 45 EVIRSLFYNKN----NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 120 (389)
Q Consensus 45 ~~v~sv~~spd----g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s 120 (389)
..|++|+|||| ++++++++ +.+++|+ + |+|+++.+++
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g------------~~~~v~~-----------------------l----~~g~lv~ss~ 152 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSG------------NIKAVLG-----------------------L----TKRRLVSSSG 152 (356)
T ss_dssp EEEEEECC------CCEEEEEEE------------EEEEEEE-----------------------E----TTTEEEEEES
T ss_pred cceEEEEECCCccccccEEEeCC------------CeEEEEe-----------------------c----CCCcEEEecc
Confidence 47999999999 99988832 2233332 2 4677777744
Q ss_pred --CCCeEEEEeC-CCCeEEEE--ecCCcEEEEEEcC----CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC---ce
Q 016446 121 --QDSIYKVFDL-KNYTMLYS--ISDKHVQEIKISP----GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---RN 188 (389)
Q Consensus 121 --~D~tiklWdl-~~g~~l~t--l~~~~V~~vafS~----g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~---~~ 188 (389)
.|++||+|++ .+|+.+.+ ++...|..++||+ +..||++ +.|+||||||++||+++++|.+|.. .+
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg---S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT---TIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE---ETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe---cCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 7999999999 56887755 5566666777763 4788776 4568999999999999999986543 45
Q ss_pred eEEEEEecCCCeE------------EEEeCCCcEEEEECCCCeEEEEc-----ccCCCceEEEEEcCCCcEEEEEc-CCe
Q 016446 189 KKVDFIEQFNEKL------------LVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 189 ~~v~f~~~~~~~l------------~~~s~D~tIklWd~~tg~~~~~l-----~gh~~~v~sv~fspdg~~laS~s-D~t 250 (389)
..++|+ |++..+ ++++.|+|||+||+.+|+++.++ .||...+.+..++ +.++|+++ |+|
T Consensus 230 ~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT 306 (356)
T 2w18_A 230 CHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT 306 (356)
T ss_dssp EEEEEE-ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred EEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence 667898 667665 45779999999999999998876 5887765555554 88999999 999
Q ss_pred EEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 251 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 251 IklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
|||||+. |+++++|++|...+ +..|+|||||++|||||.| +||||||+
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~v----vs~vafSPDG~~LaSGS~D-----------~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQH----WSFVKWSGTDSHLLAGQKD-----------GNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CC----CCEEEECSSSSEEEEECTT-----------SCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCe----EEEEEECCCCCEEEEEECC-----------CcEEEecC
Confidence 9999997 99999999998763 4569999999999999765 99999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=276.53 Aligned_cols=296 Identities=11% Similarity=0.090 Sum_probs=231.4
Q ss_pred cEEEEEe----cCc----eEEEEec--ccceee--eeeecCCcceEEEEEEee--------------CCCEEEEEEEeec
Q 016446 14 DIVFALA----HSG----VCAAFSR--ETNRRI--CFLNVSPDEVIRSLFYNK--------------NNDSLITVSVYAS 67 (389)
Q Consensus 14 ~~~a~~~----~~g----tiklW~~--~tg~~l--~tl~~~~~~~v~sv~~sp--------------dg~~l~s~s~~~~ 67 (389)
+.+++++ .+| +++|||. .+|+++ .++.++. ..++.+++++ ++..|+.++...+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~ 154 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK-QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG 154 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh-hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence 4566665 567 9999999 999998 5588875 7889988886 3778888776432
Q ss_pred CCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC---eEEEEeCCCCeEEEEe-cCCc
Q 016446 68 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSI-SDKH 143 (389)
Q Consensus 68 ~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~---tiklWdl~~g~~l~tl-~~~~ 143 (389)
++ ...++++||+..++. +.+.. +...+.+++|| |||+.||+++.|+ +|++||+.+|++.... +...
T Consensus 155 ~~----~~~~i~i~d~~g~~~---~~l~~--~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 155 GQ----FPYELRVSDYDGYNQ---FVVHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp SS----CCEEEEEEETTSCSC---EEEEE--ESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred CC----ccceEEEEcCCCCCC---EEEeC--CCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 21 015888999764332 33432 44567789998 9999999999886 9999999999976433 3568
Q ss_pred EEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CC--cEEEEECCCCe
Q 016446 144 VQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAE 219 (389)
Q Consensus 144 V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~--tIklWd~~tg~ 219 (389)
+.+++|| +|++||.+.....+..|++||+.+|++ ..+..|...+..++|+ |++..|++++. ++ .|.+||+.+++
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999 588888554444456799999999887 5677787889999998 78888998875 55 67777999888
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEc-C---CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 220 LMEVSRTEFMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 220 ~~~~l~gh~~~v~sv~fspdg~~laS~s-D---~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
+. .+..|...+.+++|+|||++|++++ + .+|++||++ |++ +.+..|. . +.+++|||||++|++++.|
T Consensus 303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~-----~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L-----DETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-----CEEEEECTTSSEEEEEEEE
T ss_pred EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-----cCCeEEcCCCCEEEEEEcC
Confidence 64 4566778899999999999999886 4 599999997 666 5677664 3 6899999999999999876
Q ss_pred CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 295 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
. ....|++||+. |+++..|.+|. ..|++++|||.-+
T Consensus 375 ~--------~~~~l~~~d~~-g~~~~~l~~~~----------------------------------~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 G--------MGSVLNLVSTD-GRFKARLPATD----------------------------------GQVKFPAWSPYLH 410 (415)
T ss_dssp T--------TEEEEEEEETT-SCCEEECCCSS----------------------------------SEEEEEEECCCCC
T ss_pred C--------CccEEEEEECC-CCcEEEeeCCC----------------------------------CCCcCCccccccc
Confidence 1 11289999976 78889999998 5899999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=307.76 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=199.7
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCC--C
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVN--G 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pd--G 113 (389)
.++.+|. +.|.+++|+|+|+.|++ ++.| ..++||++..+.. ..+.. ..+...+.+++|+ |+ |
T Consensus 3 ~~l~gH~-~~V~~l~~s~dg~~lat----g~~d------g~I~vwd~~~~~~---~~~~~l~~h~~~V~~l~~s-~~~~~ 67 (753)
T 3jro_A 3 VIANAHN-ELIHDAVLDYYGKRLAT----CSSD------KTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWA-HPKFG 67 (753)
T ss_dssp -----CC-CCEEEECCCSSSCCEEE----EETT------TEEEEEEEETTEE---EEEEEECCCSSCEEEEEEC-CTTSC
T ss_pred eecccCc-ceeEEEEECCCCCeEEE----EECC------CcEEEEecCCCCC---ccceeccCCcCceEEEEec-CCCCC
Confidence 4567764 89999999999999999 4577 7899999874332 11221 2355667889998 66 9
Q ss_pred eEEEEecCCCeEEEEeCCCCe--EEEEec--CCcEEEEEEcC---CceEEEEecCCCCeeEEEEEcCCCe--EEEEEeec
Q 016446 114 KVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHL 184 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~--~l~tl~--~~~V~~vafS~---g~~la~~~~~s~d~tiklWd~~tG~--~l~tl~~~ 184 (389)
++|++|+.|++|++||+.+++ ++..+. ...|.+++|+| +..+++++ .|++|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeecC
Confidence 999999999999999999987 556654 57899999995 78888874 45899999999883 45567788
Q ss_pred CCceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCC----eEEEEcccCCCceEEEEEcCC---CcEEEE
Q 016446 185 LHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNA----ELMEVSRTEFMTPSAFIFLYE---NQLFLT 245 (389)
Q Consensus 185 ~~~~~~v~f~~~------------~~~~l~~~s~D~tIklWd~~tg----~~~~~l~gh~~~v~sv~fspd---g~~laS 245 (389)
...+..++|++. ++..+++++.|++|++||++++ .+..++.+|...|.+++|+|+ |++|++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 899999999843 5789999999999999999987 678889999999999999999 999999
Q ss_pred Ec-CCeEEEEeCC-Cc-----EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 246 FR-NRTVAVWNFR-GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 246 ~s-D~tIklWd~~-G~-----~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
++ |++|++||+. ++ .+....+|... |++++|+|||++|++|+. ||+|++||+.++.
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~l~~spdg~~l~s~s~-----------Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLEG 287 (753)
T ss_dssp EESSSCEEEEEESSSSSCCBCCBSSSSCCSSC-----CCCEEECTTTCCEEEECS-----------SSCEECCBCCSSS
T ss_pred EecCCEEEEecCCCCCCcceeEEeccCCCCCc-----eEEEEEcCCCCEEEEEcC-----------CCEEEEEecCCCC
Confidence 99 9999999996 53 33334456655 799999999999999876 4999999998654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=294.99 Aligned_cols=314 Identities=7% Similarity=0.055 Sum_probs=242.7
Q ss_pred ccEEEEEee--ccEEEEEec-Cc-----eEEEEecccceeeeeeecCCc-----------------------ceEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAH-SG-----VCAAFSRETNRRICFLNVSPD-----------------------EVIRSLFY 52 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~-~g-----tiklW~~~tg~~l~tl~~~~~-----------------------~~v~sv~~ 52 (389)
..|..+.|+ |++||+++. |+ +|++||.++|++...+..+.. ..|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 468899999 999999998 88 999999999988777765421 23789999
Q ss_pred eeCCCEEEEEEEeecCCCcceeeeeeeEeEeccC---CCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEe
Q 016446 53 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG---KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 129 (389)
Q Consensus 53 spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g---~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWd 129 (389)
||||+.|++++ . .++++|++..| ++ ..+. .+...+..++|| |||++||+++ +++|++||
T Consensus 117 SpDg~~l~~~~----~-------~~i~~~d~~~~~~~~~---~~l~--~~~~~~~~~~~S-PDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 117 SPDAQRLLFPL----G-------GELYLYDLKQEGKAAV---RQLT--HGEGFATDAKLS-PKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp CTTSSEEEEEE----T-------TEEEEEESSSCSTTSC---CBCC--CSSSCEEEEEEC-TTSSEEEEEE-TTEEEEEE
T ss_pred CCCCCEEEEEe----C-------CcEEEEECCCCCcceE---EEcc--cCCcccccccCC-CCCCEEEEEe-CCcEEEEe
Confidence 99999999964 2 57889999888 54 2232 233456789998 9999999987 56999999
Q ss_pred CCCCeEEEEecC--Cc----------------EEEEEEc-CCceEEEEecCC----------------------------
Q 016446 130 LKNYTMLYSISD--KH----------------VQEIKIS-PGIMLLIFNRSS---------------------------- 162 (389)
Q Consensus 130 l~~g~~l~tl~~--~~----------------V~~vafS-~g~~la~~~~~s---------------------------- 162 (389)
+.++++...... .. +.+++|| ||++||+++.+.
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 999887654432 22 4789999 688898875443
Q ss_pred --CCeeEEEEEcCC-CeEEEEEe--ecCCceeEEEEEecCCCeEEEEe-----CCCcEEEEECCCCeEEEEcccCCC---
Q 016446 163 --SHVPLKILSIED-GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFM--- 229 (389)
Q Consensus 163 --~d~tiklWd~~t-G~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s-----~D~tIklWd~~tg~~~~~l~gh~~--- 229 (389)
...+|++||+.+ |++..... .|...+..++| |++..|++.+ .+.+|++||+++|++..++.+|..
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 112889999999 98766543 36677899999 6888888764 368899999999999888877654
Q ss_pred -ceEEEEEcCCCcEEEEEc-CCeEEEEeC--CCcEEEEeccCcCCcCCCCeeEE-EECCCCCEEEEEecCCCcccccCCC
Q 016446 230 -TPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 230 -~v~sv~fspdg~~laS~s-D~tIklWd~--~G~~l~tl~gh~~~~~~~~v~sv-~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
.+..++|+|||+++++++ |++++||.+ +|+ ++.|.+|... |.++ +|||||++|+..+.+
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~~~~s~dg~~l~~~~~~---------- 400 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-----VDELLAVDEKAGLAYFRAGI---------- 400 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-----EEEEEEEETTTTEEEEEECS----------
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-----EEeEeEEeCCCCEEEEEEeC----------
Confidence 456899999999999988 998888876 477 8889888654 6777 599999988655433
Q ss_pred CC--eEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 305 AG--SINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 305 D~--tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
|+ +++||++.. |++++.|.+ . ..+.+++|||||+.||....+
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~-~----------------------------------~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK-A----------------------------------PGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC-S----------------------------------CSEEEEEECTTSSEEEEEEEE
T ss_pred CCCceEEEEEEEcCCCCeeeccc-C----------------------------------CCceEEEECCCCCEEEEEecC
Confidence 34 899999864 777777766 3 378999999999998876544
Q ss_pred ----CcEEEcc
Q 016446 382 ----GLVHVWS 388 (389)
Q Consensus 382 ----~tIrlW~ 388 (389)
..+.+|+
T Consensus 446 ~~~p~~~~l~~ 456 (741)
T 2ecf_A 446 NSTPPQIELFR 456 (741)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 3455554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=278.86 Aligned_cols=295 Identities=7% Similarity=-0.017 Sum_probs=230.1
Q ss_pred EEEEEee--ccEEEEEecCceEEEEec--ccceeeeeeecCCcceEEEEEEee----CCCEEEEEEEeecCCCcceeeee
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNK----NNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~--~tg~~l~tl~~~~~~~v~sv~~sp----dg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
+..|.|+ |++|++++++++|++||+ .+++++.++..+ ..++.|+||| ||++|++++. .+ .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~---~~------~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAY---WP------PQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEE---ES------SE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC--CCcceEEeCCCcCCCCCEEEEEEc---cC------Ce
Confidence 6778888 899999999999999999 899999999854 5789999999 9999998653 34 67
Q ss_pred eeEeEeccCCCCCcceeEee-------ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE--Eec-CCcEEEE
Q 016446 78 TKIEYIRRGKPDSGFALFES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS-DKHVQEI 147 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~-------~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~--tl~-~~~V~~v 147 (389)
+.+||..++++......-.. .....+.+++||+.++.++++...+++|.+||+.+++++. ++. +..++++
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~ 329 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence 88999888886322111000 0112456799984355678899999999999998877543 444 5678999
Q ss_pred EEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee----cCCceeEEEEEecCCCeEEE-Ee-CCCcEEEEECCC---
Q 016446 148 KIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH----LLHRNKKVDFIEQFNEKLLV-KQ-ENENLQILDVRN--- 217 (389)
Q Consensus 148 afS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~----~~~~~~~v~f~~~~~~~l~~-~s-~D~tIklWd~~t--- 217 (389)
+|+ +|++|++++. .+++|++||+.+|++++++.. |.+ ..+.|..|+++.+.+ ++ .|++|+|||..+
T Consensus 330 ~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 330 GWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred eECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCC--CCcccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 999 5777776643 357999999999999999984 332 233444466555554 44 689999999998
Q ss_pred ----CeEEEEcccCCCceEEEEEcCCCcEEEEEc--------CCeEEEEeCC-CcEE-EEe--------ccCcCCcCCCC
Q 016446 218 ----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--------NRTVAVWNFR-GELV-TSF--------EDHLLWHPDCN 275 (389)
Q Consensus 218 ----g~~~~~l~gh~~~v~sv~fspdg~~laS~s--------D~tIklWd~~-G~~l-~tl--------~gh~~~~~~~~ 275 (389)
+++++++.+|...+..|+|+|||++|.+++ +++|++||++ ++++ ..| ..|...
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~----- 480 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR----- 480 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE-----
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc-----
Confidence 899999999999999999999999999986 6799999996 8876 554 344443
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|..++|+|||++|..+.... -+.|++|.|||.+|++|+++++++.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~------~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNG------KNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EEEEEECSSSSEEEEEEECC------TTSCCEEEEEETTTTEEEEEECCTT
T ss_pred eEeccCCCCCCEEEEEeecC------CCCCCeEEEEECCCceEEEeecCCC
Confidence 79999999999999764310 0247999999999999999999765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=271.85 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=199.0
Q ss_pred eeecCCcceEEEEEEeeC-CCEEEEEEEeecCCCcceeeeeeeEeEeccC--------CCCCcceeEeeecccCceeEEE
Q 016446 38 FLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRG--------KPDSGFALFESESLKWPGFVEF 108 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g--------~~~~~~~l~~~~~~~~~~~v~F 108 (389)
.+.+| ...|++++|+|+ ++.||+ ++.| ..+++|++... +......+ ..+...+.+++|
T Consensus 123 ~~~~h-~~~v~~l~~~p~~~~~lat----~~~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~ 189 (430)
T 2xyi_A 123 IKINH-EGEVNRARYMPQNACVIAT----KTPS------SDVLVFDYTKHPSKPEPSGECQPDLRL--RGHQKEGYGLSW 189 (430)
T ss_dssp EEEEE-SSCCSEEEEETTEEEEEEE----ECSS------SCEEEEEGGGSCSSCCTTCCCCCSEEE--ECCSSCCCCEEE
T ss_pred EEEcC-CCcEEEEEECCCCCcEEEE----ECCC------CcEEEEECCCcccccCccccCCCcEEe--cCCCCCeEEEEe
Confidence 34444 589999999998 667777 5567 78999999762 22111112 235556778999
Q ss_pred ecCCCe-EEEEecCCCeEEEEeCCCCeE-------EEEe--cCCcEEEEEEcC--CceEEEEecCCCCeeEEEEEcCCC-
Q 016446 109 DDVNGK-VLTYSAQDSIYKVFDLKNYTM-------LYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDG- 175 (389)
Q Consensus 109 s~pdG~-~Las~s~D~tiklWdl~~g~~-------l~tl--~~~~V~~vafS~--g~~la~~~~~s~d~tiklWd~~tG- 175 (389)
+ |+++ +|++|+.|++|+|||+.++.. ...+ +...|.+|+|+| +.+||++ +.|++|++||+.++
T Consensus 190 ~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~---~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 190 N-PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---ADDQKLMIWDTRNNN 265 (430)
T ss_dssp C-TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE---ETTSEEEEEETTCSC
T ss_pred C-CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE---eCCCeEEEEECCCCC
Confidence 8 8888 999999999999999987321 2334 356899999996 5566665 44589999999988
Q ss_pred --eEEEEEeecCCceeEEEEEecCCC-eEEEEeCCCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CC
Q 016446 176 --TVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NR 249 (389)
Q Consensus 176 --~~l~tl~~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~ 249 (389)
+++.++..|...+..++|+ |++. .+++++.|++|+|||+++ ++++.++.+|...|.+++|+|+++ +|++++ |+
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCcceeEeecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 6888998899999999998 5665 577889999999999998 678899999999999999999995 788888 99
Q ss_pred eEEEEeCCC---------------cEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 250 TVAVWNFRG---------------ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 250 tIklWd~~G---------------~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+|+|||+.. +++..+.+|... |.+++|+|+|+ +|||++.| |+|+||++
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~l~s~s~d-----------g~i~iw~~ 408 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWIICSVSED-----------NIMQVWQM 408 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC-----EEEEEECSSSTTEEEEEETT-----------SEEEEEEE
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCC-----ceEEEECCCCCCEEEEEECC-----------CCEEEeEc
Confidence 999999953 788899999876 89999999999 89998764 99999998
Q ss_pred CCCe
Q 016446 314 LTGK 317 (389)
Q Consensus 314 ~tg~ 317 (389)
.++.
T Consensus 409 ~~~~ 412 (430)
T 2xyi_A 409 AENV 412 (430)
T ss_dssp CHHH
T ss_pred cccc
Confidence 7543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-31 Score=262.50 Aligned_cols=287 Identities=13% Similarity=0.107 Sum_probs=212.5
Q ss_pred ceEEEEEEeeCCC-EEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCCcceeEeeecccCceeEEEec-----------
Q 016446 45 EVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDD----------- 110 (389)
Q Consensus 45 ~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~~~~l~~~~~~~~~~~v~Fs~----------- 110 (389)
..++...|+++|. .|++++.....| ..+. ..++|||+ .+|++.....+. .+...+..++|++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~-G~~~-~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPD-GSYN-VAYQLVDTGGAPGTVLAQNSYK--VNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTT-SCEE-EEEEEEECSSSTTCEEEEEEEE--ECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCC-CeEE-EEEEEEeCCCCCCCEEeeeEEE--cChhHHHHHHHHHHHHHHHHHcCC
Confidence 4677888889886 454665432222 0011 48899999 888862222222 2222334455541
Q ss_pred --CCCeEEEEecCC------CeEEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEE
Q 016446 111 --VNGKVLTYSAQD------SIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLK 179 (389)
Q Consensus 111 --pdG~~Las~s~D------~tiklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~ 179 (389)
+.+..||+++.+ ++|++||+.. .++..+ +...|.+++|| +|++||+++.++.+.+|++||+.+|++.
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 125667766654 7999999964 444444 46789999999 6889998876655579999999999986
Q ss_pred EEeecCCceeEEEEEecCCCeEEE-EeCCC--cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC--eEE
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVA 252 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~--tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~--tIk 252 (389)
.+..|...+..++|+ |++.+|+. ++.|+ .|++||++++++ ..+.+|...+.+++|+|||++|+.++ ++ .|.
T Consensus 217 ~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 217 QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 466677889999998 78888884 55555 499999999987 56788989999999999999998876 45 677
Q ss_pred EEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 253 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 253 lWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+||+.+..+..+..|... +.+++|||||++|++++.+. .+.+|++||+.+|++ ..|..|.
T Consensus 295 ~~d~~~~~~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~~--------g~~~i~~~d~~~~~~-~~l~~~~------ 354 (415)
T 2hqs_A 295 KVNINGGAPQRITWEGSQ-----NQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGV-QVLSSTF------ 354 (415)
T ss_dssp EEETTSSCCEECCCSSSE-----EEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCE-EECCCSS------
T ss_pred EEECCCCCEEEEecCCCc-----ccCeEECCCCCEEEEEECcC--------CceEEEEEECCCCCE-EEecCCC------
Confidence 779873334556666554 78999999999999988651 246999999999987 4566653
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCC---cEEEcc
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG---LVHVWS 388 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~---tIrlW~ 388 (389)
.+.+++|||||++|++++.|+ .|.+||
T Consensus 355 -----------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 355 -----------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp -----------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred -----------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 688999999999999999887 788887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=284.85 Aligned_cols=320 Identities=10% Similarity=-0.011 Sum_probs=227.6
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcc--eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE--VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~--~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
++.++.|+ |+++++ +.||+|++||..+|++...+.++... .|.+++|||||+.|++++.+.... ..=....+.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~-~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY-QHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS-SSCCCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce-eecceeeEEE
Confidence 35667788 777766 78999999999999998888765421 499999999999999976432210 0000157889
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcE-------------
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------------- 144 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V------------- 144 (389)
||+.+|++ ..+-. ..+...+..++|| |||+.||+++. ++|++||+.+|++...... ..+
T Consensus 96 ~d~~~~~~---~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 96 SKIPHGDP---QSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EESSSCCC---EECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred EECCCCce---EeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 99988875 22211 1111225679998 99999999886 7999999999987655432 222
Q ss_pred -----EEEEEc-CCceEEEEecCC-------------------------------CCeeEEEEEcCCCeEEEEEeec---
Q 016446 145 -----QEIKIS-PGIMLLIFNRSS-------------------------------SHVPLKILSIEDGTVLKVFYHL--- 184 (389)
Q Consensus 145 -----~~vafS-~g~~la~~~~~s-------------------------------~d~tiklWd~~tG~~l~tl~~~--- 184 (389)
.+++|| ||++||+++.+. .+.+|++||+.+|++...+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 789999 688898876442 1348999999999987777754
Q ss_pred ---CCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCeEEEEccc-CCCceE----EEEEcCCCcEEEEE--c-CC
Q 016446 185 ---LHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRT-EFMTPS----AFIFLYENQLFLTF--R-NR 249 (389)
Q Consensus 185 ---~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~~~~~l~g-h~~~v~----sv~fspdg~~laS~--s-D~ 249 (389)
...+..++|+ ||+..+++.+ .+.+|++||+.+|++.+.+.. |..++. .++|||||+.|+.. . |+
T Consensus 251 ~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 4677899998 6777665653 347899999999999887654 445554 78999999977753 3 77
Q ss_pred ------eEEEEe-CCCcE---EEEeccCcCCcCCCCeeE-EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC--
Q 016446 250 ------TVAVWN-FRGEL---VTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-- 316 (389)
Q Consensus 250 ------tIklWd-~~G~~---l~tl~gh~~~~~~~~v~s-v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg-- 316 (389)
.|.+|| ..+.. ++.|..+... +.. ++|||||++|+..+.+ ...++++||++..+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~--------~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWD-----VTKILAYDEKGNKIYFLSTE--------DLPRRRQLYSANTVGN 396 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSC-----EEEEEEEETTTTEEEEEESS--------SCTTCCEEEEECSSTT
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeE-----EEeeeEEcCCCCEEEEEEcC--------CCCcceEEEEEeCCCC
Confidence 577788 45433 6667643222 344 7999999999876643 01178999998643
Q ss_pred eEEEEecC---CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 317 KCLAKINA---TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 317 ~~l~tl~g---H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
.....|.+ |. ..|.+++|||||+.||...
T Consensus 397 ~~~~~l~~~~~~~----------------------------------~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 397 FNRQCLSCDLVEN----------------------------------CTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCCBCSSTTSSSS----------------------------------CCCCEEEECTTSSEEEEEC
T ss_pred CCcceecccccCC----------------------------------CCeEEEEECCCCCEEEEEc
Confidence 23444443 33 4688999999999888643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.6e-31 Score=275.68 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=224.1
Q ss_pred eeccEEEEEecCceEEEEecccceee-eeeecCCc----------------ceEEEEEEeeCCCEEEEEEEeecCCCcce
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRI-CFLNVSPD----------------EVIRSLFYNKNNDSLITVSVYASDNFSSL 73 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l-~tl~~~~~----------------~~v~sv~~spdg~~l~s~s~~~~~d~~~l 73 (389)
+.++.++..+.++ | +||..||+.+ ..+..++. ..|.+++|||| +.|+.+ .+
T Consensus 33 w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-----~~---- 100 (706)
T 2z3z_A 33 WMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-----TQ---- 100 (706)
T ss_dssp EETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-----ET----
T ss_pred CcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-----EC----
Confidence 3377788888888 8 9999999884 45544321 35999999999 666553 23
Q ss_pred eeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-----CeEEEEec-C-Cc---
Q 016446 74 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSIS-D-KH--- 143 (389)
Q Consensus 74 ~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-----g~~l~tl~-~-~~--- 143 (389)
..+++||+.+|++ ..+. .....+.+++|| |||+.||++ .|++|++||+.+ |++..... + ..
T Consensus 101 --~~i~~~d~~~~~~---~~l~--~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 101 --GGLVGFDMLARKV---TYLF--DTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp --TEEEEEETTTTEE---EEEE--CCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred --CEEEEEECCCCce---EEcc--CCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 5888999988764 2232 233445679998 999999995 689999999998 88665433 2 22
Q ss_pred -----------EEEEEEc-CCceEEEEecC------------------------------CCCeeEEEEEcCCCeEEEEE
Q 016446 144 -----------VQEIKIS-PGIMLLIFNRS------------------------------SSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 144 -----------V~~vafS-~g~~la~~~~~------------------------------s~d~tiklWd~~tG~~l~tl 181 (389)
+.+++|| ||++||+++.+ ..+.+|++||+.+|++....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 4899999 68899887521 24578999999999976655
Q ss_pred e--ecCCceeEEEEEecCCCeEEEEeCCC-----cEEEEECCCC-eEEEEcc-cCCCc---eEEEEEcC--CCcEEEEEc
Q 016446 182 Y--HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNA-ELMEVSR-TEFMT---PSAFIFLY--ENQLFLTFR 247 (389)
Q Consensus 182 ~--~~~~~~~~v~f~~~~~~~l~~~s~D~-----tIklWd~~tg-~~~~~l~-gh~~~---v~sv~fsp--dg~~laS~s 247 (389)
. .|...+..++|+ |++..|++++.|+ +|++||+.+| ++..... .+..+ +.+++|+| ||++|++++
T Consensus 252 ~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred cCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc
Confidence 3 355667899998 7888899887665 9999999999 4433332 23322 46789999 999999998
Q ss_pred -CCeEEEEeC--CCcEEEEeccCcCCcCCCCeeE-EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 248 -NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 248 -D~tIklWd~--~G~~l~tl~gh~~~~~~~~v~s-v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
|++++||.+ +|++++.|.+|... |.+ ++|||||++|+.++.+. +.....|..||+.+|+ +..|.
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~-----v~~~~~~spdg~~l~~~~~~~------~~~~~~l~~~d~~~~~-~~~l~ 398 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWE-----VTNFAGFDPKGTRLYFESTEA------SPLERHFYCIDIKGGK-TKDLT 398 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSC-----EEEEEEECTTSSEEEEEESSS------CTTCBEEEEEETTCCC-CEESC
T ss_pred cCCccEEEEEECCCCEEEecCCCCeE-----EEeeeEEcCCCCEEEEEecCC------CCceEEEEEEEcCCCC-ceecc
Confidence 999999987 48889999887654 566 89999999988776541 0001278888887776 45554
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC----CcEEEcc
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLVHVWS 388 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D----~tIrlW~ 388 (389)
|. ..|.+++|||||+.|+.+..+ +.|++||
T Consensus 399 -~~----------------------------------~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 399 -PE----------------------------------SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp -CS----------------------------------SSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred -CC----------------------------------CceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 44 478999999999999877544 5699997
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-30 Score=241.85 Aligned_cols=276 Identities=9% Similarity=0.023 Sum_probs=216.3
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcc-eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~-~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
++++++++.+++|++||..+|+.+.++...+.. .+..++|+|||+.|+.+. ..+ ..+.+||+.+|+...
T Consensus 1 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~------~~v~~~d~~~~~~~~- 70 (337)
T 1pby_B 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLG- 70 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEE-
T ss_pred CcEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC------CeEEEEECCCCCeEe-
Confidence 367899999999999999999999998865422 478999999998776542 455 678899998887621
Q ss_pred ceeEeeec----ccCceeEEEecCCCeEEEEec------------CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCc
Q 016446 92 FALFESES----LKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGI 153 (389)
Q Consensus 92 ~~l~~~~~----~~~~~~v~Fs~pdG~~Las~s------------~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~ 153 (389)
.+.... ...+..++|+ |||++|+.++ .|+.|++||+.+++.+..+. +..+.+++|+ +|.
T Consensus 71 --~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 71 --RIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147 (337)
T ss_dssp --EEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS
T ss_pred --eEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC
Confidence 121111 1156789998 8999888886 68999999999999887776 5678899999 577
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCC-----------------------c
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE-----------------------N 209 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~-----------------------t 209 (389)
+|+++ ++.|++||+.+|+++..+..+. ....+.|+ |++..++..+ .++ +
T Consensus 148 ~l~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 148 KLYGL-----GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp CEEEE-----SSSEEEEETTTTEEEEEECSTT-TTTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred EEEEe-----CCeEEEEECCCCcEeeeeeccc-cCCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 78776 2589999999999999887442 12244665 6676665544 333 5
Q ss_pred EEEEECCCCeEE-EEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 210 LQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 210 IklWd~~tg~~~-~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
|.+||++++++. ..+..|...+..++|+|||++|+++ |++|++||+. ++++..+..+.. +.+++|+|||++
T Consensus 221 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~ 293 (337)
T 1pby_B 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHS------YYSVNVSTDGST 293 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECTTSCE
T ss_pred eEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCc------eeeEEECCCCCE
Confidence 799999999885 2345677789999999999999888 8999999997 888888875433 579999999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|++++. |++|++||+.+++.+..+..+.
T Consensus 294 l~~~~~-----------~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 294 VWLGGA-----------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEESB-----------SSEEEEEETTTCCEEEEEECGG
T ss_pred EEEEcC-----------CCcEEEEECcCCcEEEEEEcCC
Confidence 998755 4899999999999999997764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-29 Score=236.16 Aligned_cols=274 Identities=9% Similarity=0.016 Sum_probs=217.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCe-EEEEecCCC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDS 123 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~-~Las~s~D~ 123 (389)
..+..++|+|||+.|+.++..+. ..-+-..+.+||..+++. +........+..++|+ |||+ +++++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~s-~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEV-----TQAIHNDLKPFGATIN-NTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCE-----EEEEEESSCCCSEEEE-TTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeE-----EEEEecCCCcceEEEC-CCCCEEEEEecCCC
Confidence 46789999999999988664321 111127889999888876 2222223346789998 8998 556667789
Q ss_pred eEEEEeCCCCeEEEEecCC-----------cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 124 IYKVFDLKNYTMLYSISDK-----------HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 124 tiklWdl~~g~~l~tl~~~-----------~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
+|.+||+++++.+.++... .+.+++|+ +|++++++.. +.++.|.+||+.+++.+..+..+......+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 9999999999988777531 27999999 5787777642 335789999999999999998666668899
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc----CCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEe
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g----h~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl 264 (389)
+|+ |++.++++++.|+.|.+||+++++.+..+.. +...+..++|+|||++|..+. ++.|.+||.. |+++..+
T Consensus 191 ~~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 998 7889999999999999999999999887654 666788999999999766664 6999999996 9998888
Q ss_pred ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcc
Q 016446 265 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 344 (389)
Q Consensus 265 ~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~ 344 (389)
..+.. ..++|+|||++|+.++. .+++|.+||+.+++.+..+..+.
T Consensus 270 ~~~~~-------~~~~~s~dg~~l~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~------------------ 314 (353)
T 3vgz_A 270 AAPES-------LAVLFNPARNEAYVTHR----------QAGKVSVIDAKSYKVVKTFDTPT------------------ 314 (353)
T ss_dssp ECSSC-------CCEEEETTTTEEEEEET----------TTTEEEEEETTTTEEEEEEECCS------------------
T ss_pred EcCCC-------ceEEECCCCCEEEEEEC----------CCCeEEEEECCCCeEEEEEecCC------------------
Confidence 75432 47999999997766653 25899999999999999987654
Q ss_pred ccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 345 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
.+.+++|+|||+.|+.+..+
T Consensus 315 -----------------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 -----------------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----------------EEEEEEECTTSCEEEEEEEC
T ss_pred -----------------CCCeEEEcCCCCEEEEEEcc
Confidence 68899999999977776655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-30 Score=284.00 Aligned_cols=327 Identities=10% Similarity=0.003 Sum_probs=241.4
Q ss_pred ccEEEEEee--ccEEEEEecC------ceEEEEecccceeeeeeecCCcceE-------EEEEEeeCCCEEEEEEEeecC
Q 016446 4 TKVIEIVAA--RDIVFALAHS------GVCAAFSRETNRRICFLNVSPDEVI-------RSLFYNKNNDSLITVSVYASD 68 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~------gtiklW~~~tg~~l~tl~~~~~~~v-------~sv~~spdg~~l~s~s~~~~~ 68 (389)
..|.++.|+ |+.||.++.+ .+|++|+.++|+ ++.|.+|. ..+ .+++|||||+.+++++.+...
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~-~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~ 130 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFS-GKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 130 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCC-EEEETTEECSEEEEECTTCCEEEEECTTSSS
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCC-CcccccccccccccCCCCCEEEEEECCcCCC
Confidence 458899999 9999988654 489999998666 67888875 677 999999999955554321100
Q ss_pred CCcceeeeeeeEeEeccCCC------------------------------------------------------------
Q 016446 69 NFSSLKCRSTKIEYIRRGKP------------------------------------------------------------ 88 (389)
Q Consensus 69 d~~~l~~~~~~l~~i~~g~~------------------------------------------------------------ 88 (389)
+ .. ..+.+|++..|+.
T Consensus 131 ~-~~---~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v 206 (1045)
T 1k32_A 131 S-SM---TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV 206 (1045)
T ss_dssp T-TC---CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred c-cc---ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc
Confidence 0 00 0111122111110
Q ss_pred ----------------CCcceeEeee----------cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC
Q 016446 89 ----------------DSGFALFESE----------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK 142 (389)
Q Consensus 89 ----------------~~~~~l~~~~----------~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~ 142 (389)
+....+|... ....+..++|| |||+.||++ .|++|++||++.. .+..+...
T Consensus 207 ~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~S-pDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~ 283 (1045)
T 1k32_A 207 SSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLN-TDGRRILFS-KGGSIYIFNPDTE-KIEKIEIG 283 (1045)
T ss_dssp EEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEE-ESSSCEEEE-ETTEEEEECTTTC-CEEECCCC
T ss_pred cceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEc-CCCCEEEEE-eCCEEEEecCCce-EeeeeccC
Confidence 0011233211 01113457998 899999988 4899999999544 44466542
Q ss_pred -------------cEEEEEEc-C-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC-ceeEEEEEecCCCeEEEEeC
Q 016446 143 -------------HVQEIKIS-P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 143 -------------~V~~vafS-~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~-~~~~v~f~~~~~~~l~~~s~ 206 (389)
.|.+++|| | |++||+++ +++|++|++.+|+... +..|.. .+..++|+ +++.++..+.
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s--dg~~l~~~s~ 356 (1045)
T 1k32_A 284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD--TKVAFIHGTR 356 (1045)
T ss_dssp CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS--SEEEEEEEET
T ss_pred cccccccccccccccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc--CCCeEEEEEC
Confidence 58999999 7 67787765 4689999999887654 666666 78889987 7788888888
Q ss_pred CCcEE-EEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 207 NENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 207 D~tIk-lWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
+..|. +||+.++++.... +|...+..++|||||++||+++ |++|++||++ |++...+++|... +.+++|||
T Consensus 357 ~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~Sp 430 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM-----ITDFTISD 430 (1045)
T ss_dssp TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC-----CCCEEECT
T ss_pred CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC-----ccceEECC
Confidence 88898 9999988876654 8889999999999999999998 9999999997 8888888788776 68999999
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCE
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 363 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 363 (389)
||++||+++.+... ......+++|++||+.+|+ +..+.+|. ..+
T Consensus 431 DG~~la~~~~~~~~-~~~~~~~~~i~l~d~~~g~-~~~l~~~~----------------------------------~~~ 474 (1045)
T 1k32_A 431 NSRFIAYGFPLKHG-ETDGYVMQAIHVYDMEGRK-IFAATTEN----------------------------------SHD 474 (1045)
T ss_dssp TSCEEEEEEEECSS-TTCSCCEEEEEEEETTTTE-EEECSCSS----------------------------------SBE
T ss_pred CCCeEEEEecCccc-cccCCCCCeEEEEECCCCc-EEEeeCCC----------------------------------ccc
Confidence 99999998764000 0000123699999999888 77888887 478
Q ss_pred EEEEECCCCCEEEEecCCCcEEEcc
Q 016446 364 TSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 364 ~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+++|||||+.|+.++.++..++|+
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCceEcCCCCEEEEEecccCCcCcc
Confidence 8999999999999999999888886
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=282.01 Aligned_cols=315 Identities=11% Similarity=0.023 Sum_probs=229.6
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEee--cCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYA--SDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~--~~d~~~l~~~~~~l~ 81 (389)
..+..+.|+++.||..+. +.+.+|++++|+ .+.|.+|. ..|.+++|||||+.||+++.+. ..+ .++++|
T Consensus 15 ~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~-~~~lt~~~-~~v~~~~~SPDG~~la~~s~~~~~~~~------~~i~~~ 85 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCC-DDLWEHDLKSGS-TRKIVSNL-GVINNARFFPDGRKIAIRVMRGSSLNT------ADLYFY 85 (1045)
T ss_dssp CCCEEEEEETTEEEEEET-TEEEEEETTTCC-EEEEECSS-SEEEEEEECTTSSEEEEEEEESTTCCE------EEEEEE
T ss_pred ceEeCcEEeCCEEEEEEC-CcEEEEECCCCc-EEEeeeCC-CcccCeEECCCCCEEEEEEeeccCCCC------CeEEEE
Confidence 457888999999998886 799999997555 56788764 8999999999999999987652 122 578899
Q ss_pred EeccCCCCCcceeEeeecccCc-------eeEEEecCCCeEEEEecCC------CeEEEEeCCCCeEEEEe---------
Q 016446 82 YIRRGKPDSGFALFESESLKWP-------GFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYSI--------- 139 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~-------~~v~Fs~pdG~~Las~s~D------~tiklWdl~~g~~l~tl--------- 139 (389)
++..|+. ..|.. +...+ ..++|| |||+++++++.| ..|.+|++.++++....
T Consensus 86 d~~~g~~---~~lt~--~~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 159 (1045)
T 1k32_A 86 NGENGEI---KRITY--FSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILF 159 (1045)
T ss_dssp ETTTTEE---EECCC--CCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEE
T ss_pred ECCCCCe---EEccc--CCCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeee
Confidence 9877763 22221 22223 679998 999988888755 45777888776643110
Q ss_pred ------------------------------------------cCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCC-Ce
Q 016446 140 ------------------------------------------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GT 176 (389)
Q Consensus 140 ------------------------------------------~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~t-G~ 176 (389)
+...|.+++|+++.+++++ +.|++++||.+.. |.
T Consensus 160 spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~---~~dg~~~l~~~~~~g~ 236 (1045)
T 1k32_A 160 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFIT---DIDGFGQIYSTDLDGK 236 (1045)
T ss_dssp ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEE---CTTSSCEEEEEETTSC
T ss_pred CCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEE---eccCceEEEEEeCCCC
Confidence 1124555666655333332 2345666765432 22
Q ss_pred EEEEE---------------------------------------ee-----------cCCceeEEEEEecCCCeEEEEeC
Q 016446 177 VLKVF---------------------------------------YH-----------LLHRNKKVDFIEQFNEKLLVKQE 206 (389)
Q Consensus 177 ~l~tl---------------------------------------~~-----------~~~~~~~v~f~~~~~~~l~~~s~ 206 (389)
.++.+ .+ |...+..++|++|++..+++++
T Consensus 237 ~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~- 315 (1045)
T 1k32_A 237 DLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS- 315 (1045)
T ss_dssp SCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred cceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence 22222 21 1224667777645667777766
Q ss_pred CCcEEEEECCCCeEEEEcccCCC-ceEEEEEcCCCcEEEEEc-CCeEE-EEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 207 NENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 207 D~tIklWd~~tg~~~~~l~gh~~-~v~sv~fspdg~~laS~s-D~tIk-lWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
+++|.+|++.+++..+ +..|.. .+..++|+ ||+.|+.++ +..+. +||+.+.....+.+|... +..++|||
T Consensus 316 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~-----~~~~~~Sp 388 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDR 388 (1045)
T ss_dssp TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-----EEEEEECT
T ss_pred cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc-----eeeeEECC
Confidence 7889999998887655 567777 89999999 999999998 77888 889985445566677654 79999999
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCE
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 363 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 363 (389)
||++||+++.+ ++|++||+.+|++...+.+|. ..|
T Consensus 389 DG~~la~~~~~-----------~~v~~~d~~tg~~~~~~~~~~----------------------------------~~v 423 (1045)
T 1k32_A 389 NGKFAVVANDR-----------FEIMTVDLETGKPTVIERSRE----------------------------------AMI 423 (1045)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTCCEEEEEECSS----------------------------------SCC
T ss_pred CCCEEEEECCC-----------CeEEEEECCCCceEEeccCCC----------------------------------CCc
Confidence 99999998764 899999999999998888887 478
Q ss_pred EEEEECCCCCEEEEecCCC----------cEEEccC
Q 016446 364 TSLFYDEERNEIYTGNRHG----------LVHVWSN 389 (389)
Q Consensus 364 ~svafSpdg~~LaSgs~D~----------tIrlW~~ 389 (389)
.+++|||||++||+++.++ +|++||.
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 8999999999999998755 9999983
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=231.36 Aligned_cols=282 Identities=14% Similarity=0.145 Sum_probs=208.7
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+..+++.+.+++|++||.++|+++..+..+. ..+ .++|+|||+.|+.++ ..+ ..+.+||+.+|++. .
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~---~~~------~~i~~~d~~~~~~~--~ 76 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTS---DFC------QTLVQIETQLEPPK--V 76 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEE---STT------CEEEEEECSSSSCE--E
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEe---CCC------CeEEEEECCCCcee--E
Confidence 5668888999999999999999999988764 566 999999999877754 234 58889999888751 1
Q ss_pred eeEeeecccCcee-EEEecCCCeEEEEecCCC---eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCee
Q 016446 93 ALFESESLKWPGF-VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVP 166 (389)
Q Consensus 93 ~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~---tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~t 166 (389)
..+ .....+.. ++|+ |||++|+.+..++ +|++||+.+++++.++. +....+++|+ +|++|+++... +.+
T Consensus 77 ~~~--~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~ 151 (331)
T 3u4y_A 77 VAI--QEGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS--SAN 151 (331)
T ss_dssp EEE--EECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET--TTT
T ss_pred Eec--ccCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC--CCc
Confidence 112 22234556 9998 9999999555553 99999999999988886 5678999999 57767666433 356
Q ss_pred -EEEEEcCCCeEE-----EEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeE---EEEcccCCCceEEEEE
Q 016446 167 -LKILSIEDGTVL-----KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL---MEVSRTEFMTPSAFIF 236 (389)
Q Consensus 167 -iklWd~~tG~~l-----~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~f 236 (389)
|++|++.....+ +.+ ........++|+ |++.++++++ .+++|++||++++++ +..+..+ ..+..++|
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV 228 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred eEEEEEECCCCcEeecCCccc-cCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence 999998764443 222 233556889998 7787676654 799999999999998 7777755 57889999
Q ss_pred cCCCcEEEEE-c-CCeEEEEeCC-CcE--EEEeccCc--CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 237 LYENQLFLTF-R-NRTVAVWNFR-GEL--VTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 237 spdg~~laS~-s-D~tIklWd~~-G~~--l~tl~gh~--~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
+|||++|+.+ . +++|.+||.+ |++ +.++..+. ...+......++|||||++|+.++.+ +++|+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----------~~~v~ 298 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI----------SRELK 298 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT----------TTEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC----------CCcEE
Confidence 9999966555 4 8899999997 877 66655441 11111113568999999999877665 58999
Q ss_pred EEeCCCCeEEEEecCCC
Q 016446 310 VSSILTGKCLAKINATN 326 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~ 326 (389)
+||+.+. .+..+.++.
T Consensus 299 v~d~~~~-~~~~~~~~~ 314 (331)
T 3u4y_A 299 VFTISGK-VVGYVAGIE 314 (331)
T ss_dssp EEETTSC-EEEECTTCC
T ss_pred EEEecCC-cccceeccc
Confidence 9998754 445555544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=269.23 Aligned_cols=279 Identities=13% Similarity=0.122 Sum_probs=212.7
Q ss_pred ceEEEEEEeeCCCEEEEEEE-eecCCCcceeeeeeeEeEeccCCCCCcceeEeee-cc----------------------
Q 016446 45 EVIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SL---------------------- 100 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~-~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~-~~---------------------- 100 (389)
..|.+++|||||+.|++++. ++... ..++++|++.+|+. ..++... ..
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~-----~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRN-----QLDLWSYDIGSGQT---RLLVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTT-----EEEEEEEETTTCCE---EEEECGGGTC--------------------CC
T ss_pred CCCCCceEecCCCEEEEEeccCCCCc-----ccEEEEEECCCCce---eEccchhhcccccccccchhhhhhhhhhhccc
Confidence 57899999999999999764 22111 13789999988875 2233211 11
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCC---eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED 174 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g---~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t 174 (389)
..+.+++|| |||++|++++. ++|++||+.++ ++ ..+. ...+.+++|| ||++||.++ + .+|++||+.+
T Consensus 109 ~~v~~~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~~~~~~~~~~SPDG~~la~~~-~---~~i~~~d~~~ 181 (741)
T 2ecf_A 109 TGIVDYQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHGEGFATDAKLSPKGGFVSFIR-G---RNLWVIDLAS 181 (741)
T ss_dssp EESCCCEEC-TTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCSSSCEEEEEECTTSSEEEEEE-T---TEEEEEETTT
T ss_pred cCcceeEEC-CCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccCCcccccccCCCCCCEEEEEe-C---CcEEEEecCC
Confidence 125679998 99999999886 99999999888 43 3333 4689999999 688888764 2 4899999999
Q ss_pred CeEEEEEeecCCc----------------eeEEEEEecCCCeEEEEeCCC------------------------------
Q 016446 175 GTVLKVFYHLLHR----------------NKKVDFIEQFNEKLLVKQENE------------------------------ 208 (389)
Q Consensus 175 G~~l~tl~~~~~~----------------~~~v~f~~~~~~~l~~~s~D~------------------------------ 208 (389)
|++.+....+... +..++|+ ||+.+|+.++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 9887765543332 4779998 8899999987665
Q ss_pred ---cEEEEECCC-CeEEEEcc--cCCCceEEEEEcCCCcEEEEEc------CCeEEEEeCC-CcEEEEeccCcC-CcCCC
Q 016446 209 ---NLQILDVRN-AELMEVSR--TEFMTPSAFIFLYENQLFLTFR------NRTVAVWNFR-GELVTSFEDHLL-WHPDC 274 (389)
Q Consensus 209 ---tIklWd~~t-g~~~~~l~--gh~~~v~sv~fspdg~~laS~s------D~tIklWd~~-G~~l~tl~gh~~-~~~~~ 274 (389)
+|.+||+.+ +++..... +|...+.+++| |||++|+.++ +.+|.+||+. |++...+..|.. ++.
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-- 337 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP-- 337 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--
Confidence 899999999 99877654 48889999999 9999998653 4689999997 898888877653 210
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CCeEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
.+.+++|||||++|++++. |++++||.+. +|+ +..|.+|.
T Consensus 338 ~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~~~~~~-~~~l~~~~--------------------------- 378 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSER-----------TGFQHLYRIDSKGK-AAALTHGN--------------------------- 378 (741)
T ss_dssp CCSCCEECTTSCEEEEECT-----------TSSCEEEEECSSSC-EEESCCSS---------------------------
T ss_pred cCCceEECCCCeEEEEecC-----------CCccEEEEEcCCCC-eeeeeecc---------------------------
Confidence 1468999999999888765 4778888764 566 88888876
Q ss_pred cccccccCCEEEE-EECCCCCEEE-EecCCC--cEEEcc
Q 016446 354 STVGEALEDITSL-FYDEERNEIY-TGNRHG--LVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~sv-afSpdg~~La-Sgs~D~--tIrlW~ 388 (389)
..|.++ +|||||+.|+ +++.|+ +++||+
T Consensus 379 -------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 379 -------WSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp -------SCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred -------eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 478887 5999999775 566666 999996
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=269.34 Aligned_cols=277 Identities=13% Similarity=0.097 Sum_probs=203.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecc--cCceeEEEecCCCeEEEEecCC-
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQD- 122 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~--~~~~~v~Fs~pdG~~Las~s~D- 122 (389)
.+.+++|||||+.|++ +.| .++++|++.+|+. ..++..... ..+.+++|| |||++||+++.|
T Consensus 18 ~~~~~~~spdg~~~~~-----~~d------g~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~ 82 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-----EQK------GTVRLWNVETNTS---TVLIEGKKIESLRAIRYEIS-PDREYALFSYNVE 82 (723)
T ss_dssp CCCCCCBSSSSCBCCC-----CSS------SCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCC
T ss_pred cccccEEcCCCcEEEE-----eCC------CCEEEEECCCCcE---EEEeccccccccccceEEEC-CCCCEEEEEecCc
Confidence 4688999999996654 255 5889999999986 234331111 136789998 999999999875
Q ss_pred --------CeEEEEeCCCCeEEEEec---C--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 123 --------SIYKVFDLKNYTMLYSIS---D--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 123 --------~tiklWdl~~g~~l~tl~---~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
++|++||+.++++ ..+. . ..|..++|| +|++||.++. ++|++||+.+|++.+....+...+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~----~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE----NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET----TEEEEESSSSSCCEEEECCCBTTT
T ss_pred cceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC----CeEEEEECCCCceEEEecCCCCCc
Confidence 7888999999986 3332 1 248999999 6889988753 589999999999887776543322
Q ss_pred ------------------eEEEEEecCCCeEEEEeCCC----------------------------------cEEEEECC
Q 016446 189 ------------------KKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVR 216 (389)
Q Consensus 189 ------------------~~v~f~~~~~~~l~~~s~D~----------------------------------tIklWd~~ 216 (389)
..++|+ ||+.+|+.++.|+ +|++||+.
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 689998 8899999987543 89999999
Q ss_pred CCeEEEEcccC------CCceEEEEEcCCCcEEEEEc-----CCeEEEEeCC-CcEEEEeccC-cCCcCCCCeeEEEECC
Q 016446 217 NAELMEVSRTE------FMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GELVTSFEDH-LLWHPDCNTNNIYITS 283 (389)
Q Consensus 217 tg~~~~~l~gh------~~~v~sv~fspdg~~laS~s-----D~tIklWd~~-G~~l~tl~gh-~~~~~~~~v~sv~fSp 283 (389)
++++...+..| ...+.+++|||||++|++.. +.+|++||+. |++...+..+ ..++... ...++|||
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~~~~~sp 315 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-NEEPVFSK 315 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC-CCCCEECT
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc-CCCceEcC
Confidence 99986777664 67899999999999997764 2589999996 8888777654 3432100 03789999
Q ss_pred CCCEEEEE-ecCCCcccccCCCCC------eEEEEe-CCCCe--EEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 284 DQDLIISY-CKAEPEDQWMEGSAG------SINVSS-ILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 284 dG~~laS~-s~D~~~~~~~~s~D~------tIklWd-~~tg~--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
||++|+.. +.. |+ .|.+|| ..+++ |+..|..+.
T Consensus 316 dg~~l~~~~~~~----------~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--------------------------- 358 (723)
T 1xfd_A 316 DGRKFFFIRAIP----------QGGRGKFYHITVSSSQPNSSNDNIQSITSGD--------------------------- 358 (723)
T ss_dssp TSCSEEEEEEEC----------CSSSSCEEEEEEECSSCCSSSCCCCBSCCSS---------------------------
T ss_pred CCCeEEEEEecc----------cCCCcceeEEEEEeccCCCCccceeEeecCC---------------------------
Confidence 99988865 322 35 577788 44454 255565332
Q ss_pred cccccccCCEEE-EEECCCCCEEEEecCC---CcEEEcc
Q 016446 354 STVGEALEDITS-LFYDEERNEIYTGNRH---GLVHVWS 388 (389)
Q Consensus 354 ~~~~~~~~~V~s-vafSpdg~~LaSgs~D---~tIrlW~ 388 (389)
..+.. ++|||||+.|+..+.+ ++++||+
T Consensus 359 -------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 359 -------WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -------SCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -------eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 24444 7999999999866554 8999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-28 Score=229.90 Aligned_cols=279 Identities=7% Similarity=0.066 Sum_probs=195.5
Q ss_pred EEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec-CCCeEEEE
Q 016446 50 LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVF 128 (389)
Q Consensus 50 v~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklW 128 (389)
..|+++++.+..+ ...+ ..+.+||+.+|++. ..+. .....+ .++|+ |||++|+.++ .+++|++|
T Consensus 3 ~~~~~~~~~~~v~---~~~~------~~v~~~d~~~~~~~---~~~~-~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 3 AMFQTTSNFGIVV---EQHL------RRISFFSTDTLEIL---NQIT-LGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp ----CCCCEEEEE---EGGG------TEEEEEETTTCCEE---EEEE-CCCCEE-EEEEC-SSSCEEEEEESTTCEEEEE
T ss_pred eeEcCCCCEEEEE---ecCC------CeEEEEeCccccee---eeEE-ccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEE
Confidence 3567777765443 3455 78999999998862 1222 123334 89998 8998655544 58999999
Q ss_pred eCCCCeE-EEEec-CCcEEE-EEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE
Q 016446 129 DLKNYTM-LYSIS-DKHVQE-IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 204 (389)
Q Consensus 129 dl~~g~~-l~tl~-~~~V~~-vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~ 204 (389)
|+.+++. ...+. +..... ++|+ +|++|+++...+...+|++||+.+|++++++..+ .....++|+ |++.+++++
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s-pdg~~l~~~ 145 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS-PNGNGLILI 145 (331)
T ss_dssp ECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC-TTSSCEEEE
T ss_pred ECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC-CCCCEEEEE
Confidence 9999987 66665 334444 9999 5787874322212229999999999999998854 456899998 778767665
Q ss_pred -eCCCc-EEEEECCCCeEE-----EEcccCCCceEEEEEcCCCcE-EEEEc-CCeEEEEeCC-CcE---EEEeccCcCCc
Q 016446 205 -QENEN-LQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWH 271 (389)
Q Consensus 205 -s~D~t-IklWd~~tg~~~-----~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIklWd~~-G~~---l~tl~gh~~~~ 271 (389)
..+++ |++|++.....+ +.+ .+...+..++|+|||++ +++.. +++|++||++ |++ +.++..+..
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~-- 222 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL-- 222 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC--
T ss_pred ecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC--
Confidence 56688 999998753332 222 33456899999999995 45556 9999999996 888 888876543
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccc
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKS 349 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
+..++|||||++|+.++.. +++|.+||+.+|++ +.++..+-..
T Consensus 223 ----~~~~~~spdg~~l~v~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~--------------------- 267 (331)
T 3u4y_A 223 ----PGTIVVSRDGSTVYVLTES----------TVDVFNFNQLSGTLSFVKSFGHGLLI--------------------- 267 (331)
T ss_dssp ----CCCEEECTTSSEEEEECSS----------EEEEEEEETTTTEEEEEEEEECCCCC---------------------
T ss_pred ----CceEEECCCCCEEEEEEcC----------CCEEEEEECCCCceeeeccccccccc---------------------
Confidence 4799999999988766532 57899999999998 6666544100
Q ss_pred cceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEccC
Q 016446 350 SYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 350 ~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~~ 389 (389)
.+.....+.+++|||||++|+.++ .+++|++||.
T Consensus 268 ------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 268 ------DPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp ------CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ------CCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 000002335689999999886555 5679999984
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-28 Score=226.79 Aligned_cols=277 Identities=9% Similarity=0.049 Sum_probs=194.2
Q ss_pred cEEEEE-ecCceEEEEecc-cc--eeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--cCC
Q 016446 14 DIVFAL-AHSGVCAAFSRE-TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGK 87 (389)
Q Consensus 14 ~~~a~~-~~~gtiklW~~~-tg--~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--~g~ 87 (389)
++++++ +.+++|++|+++ +| +.+..+. + ...+.+++|+|+|+.|++++ ..+ ..+.+|++. .|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~spdg~~l~~~~---~~~------~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD-V-PGQVQPMVVSPDKRYLYVGV---RPE------FRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C-SSCCCCEEECTTSSEEEEEE---TTT------TEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe-c-CCCCceEEECCCCCEEEEee---cCC------CeEEEEEecCCCCc
Confidence 444444 789999999984 45 4455554 2 36789999999999988864 234 578889886 565
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEEEec-CCCeEEEEeCC---CCeEEEEec-CCcEEEEEEc-CCceEEEEecC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK---NYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~---~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~ 161 (389)
+ ..+........+..++|+ |||++|+.++ .+++|++||+. +++++..+. ...+.+++|+ +|++|++++
T Consensus 74 ~---~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-- 147 (343)
T 1ri6_A 74 L---TFAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA-- 147 (343)
T ss_dssp E---EEEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--
T ss_pred e---eeccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec--
Confidence 4 112222222367889998 8999776554 58999999994 445556665 3578999999 577787764
Q ss_pred CCCeeEEEEEcCC-CeEEE----EEee-cCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCeE--EEEc---c-c
Q 016446 162 SSHVPLKILSIED-GTVLK----VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAEL--MEVS---R-T 226 (389)
Q Consensus 162 s~d~tiklWd~~t-G~~l~----tl~~-~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~--tg~~--~~~l---~-g 226 (389)
..+++|++||+.+ |+... .+.. .......++|+ |++.++++++ .+++|++||+. +|+. ++.+ . +
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 2357999999998 76643 2332 22356789997 7788777655 89999999994 4543 2222 2 2
Q ss_pred C--CCceEEEEEcCCCcEEE-EEc-CCeEEEEeCC--C---cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 227 E--FMTPSAFIFLYENQLFL-TFR-NRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 227 h--~~~v~sv~fspdg~~la-S~s-D~tIklWd~~--G---~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
| ...+..++|+|||++|+ +.. |++|++||++ + +.+..+..+.. +..++|+|||++|+.++.+
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~--- 297 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ------PRGFNVDHSGKYLIAAGQK--- 297 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS------CCCEEECTTSSEEEEECTT---
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc------cceEEECCCCCEEEEecCC---
Confidence 1 34677899999998776 555 9999999986 2 34555655443 4789999999999988643
Q ss_pred ccccCCCCCeEEEE--eCCCCeE--EEEecC
Q 016446 298 DQWMEGSAGSINVS--SILTGKC--LAKINA 324 (389)
Q Consensus 298 ~~~~~s~D~tIklW--d~~tg~~--l~tl~g 324 (389)
|++|++| |..+|+. +..+..
T Consensus 298 -------~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 298 -------SHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp -------TCEEEEEEEETTTTEEEEEEEEEC
T ss_pred -------CCeEEEEEEcCCCceeeEcccccc
Confidence 5899999 5557754 444443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=259.49 Aligned_cols=276 Identities=11% Similarity=-0.013 Sum_probs=201.8
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
.++++++...+...|++|+|+|||++||+++. .| .+++||++..|+. ..+.. .....+.+++|| ||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~---~~------g~~~lw~~~~g~~---~~lt~-~~~~~~~~~~~s-pd 75 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGF---SE------GSVNAYLYDGGET---VKLNR-EPINSVLDPHYG-VG 75 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEE---ET------TEEEEEEEETTEE---EECCS-SCCSEECEECTT-CS
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEc---cC------CceeEEEEcCCCc---Eeeec-ccccccccccCC-CC
Confidence 34555555444568999999999999999763 25 5778899866653 22211 121345679998 88
Q ss_pred CeEEEEecC---CCeEEEEeCC---CCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 113 GKVLTYSAQ---DSIYKVFDLK---NYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 113 G~~Las~s~---D~tiklWdl~---~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
++|++++. +...+||.+. +|... .+. ...+...+|| +|+.++..+ .+.|.+ .|||+.+|++.+...++
T Consensus 76 -~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s-~~~~~~-~l~d~~~g~~~~l~~~~ 151 (582)
T 3o4h_A 76 -RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTG-ATEDRV-ALYALDGGGLRELARLP 151 (582)
T ss_dssp -EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEE-ECSSCE-EEEEEETTEEEEEEEES
T ss_pred -eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEe-cCCCCc-eEEEccCCcEEEeecCC
Confidence 88887775 6677787653 34433 343 3334455677 444332221 233344 49999999887766543
Q ss_pred CCceeEEEEEecCCCeEEEEeCC----CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CC--eEEEEeCC
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQEN----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNFR 257 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D----~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~--tIklWd~~ 257 (389)
. .+++|+ |||..|++++.| .+|++||+.+|++. .+.+|...+..++|||||+.|+++. |+ +|++||++
T Consensus 152 ~---~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 152 G---FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp S---CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred C---ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence 2 899998 789999987766 88999999999876 5688999999999999999999776 88 99999997
Q ss_pred -CcEEEEeccCcCCcCCCCeeEEE--------ECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 258 -GELVTSFEDHLLWHPDCNTNNIY--------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 258 -G~~l~tl~gh~~~~~~~~v~sv~--------fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
|++. .+.+|... +.+++ |||||+++++++.| ++++||++ |+++.+ +.
T Consensus 227 ~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~~-----------g~~~l~~~--g~~~~~---~~-- 282 (582)
T 3o4h_A 227 DGSVE-DLELPSKD-----FSSYRPTAITWLGYLPDGRLAVVARRE-----------GRSAVFID--GERVEA---PQ-- 282 (582)
T ss_dssp TCCEE-ECCCSCSH-----HHHHCCSEEEEEEECTTSCEEEEEEET-----------TEEEEEET--TEEECC---CS--
T ss_pred CCcEE-EccCCCcC-----hhhhhhccccceeEcCCCcEEEEEEcC-----------CcEEEEEE--CCeecc---CC--
Confidence 7777 88888754 56677 99999999998765 89999998 887652 22
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc---EEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL---VHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t---IrlW~ 388 (389)
..|.+++|| ||+++++++.+.+ +.+|+
T Consensus 283 --------------------------------~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 283 --------------------------------GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp --------------------------------SEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred --------------------------------CceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 368899999 9999999998865 55554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=224.00 Aligned_cols=250 Identities=10% Similarity=0.070 Sum_probs=193.7
Q ss_pred eeeeEeEeccCCCCCcceeEeeeccc---CceeEEEecCCCeE-EEEecCCCeEEEEeCCCCeEEEEec-CC------cE
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLK---WPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DK------HV 144 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~---~~~~v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l~tl~-~~------~V 144 (389)
..+.+||+.+|++ +.....-. .+..++|+ |||+. +++++.+++|++||+.+++.+.++. .. .+
T Consensus 11 ~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T 1pby_B 11 DKLVVIDTEKMAV-----DKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp TEEEEEETTTTEE-----EEEEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred CeEEEEECCCCcE-----EEEEEcCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence 7889999888875 22212222 47789998 89965 5677788999999999999887765 23 67
Q ss_pred EEEEEc-CCceEEEEecC-----C----CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 016446 145 QEIKIS-PGIMLLIFNRS-----S----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 214 (389)
Q Consensus 145 ~~vafS-~g~~la~~~~~-----s----~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd 214 (389)
.+++|+ +|++|+++... . .++.|++||+.+++.+..+.. ......++|+ |++.+++++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCEEEEe--CCeEEEEE
Confidence 889999 57788777421 0 357999999999999998874 3567889997 778778777 78999999
Q ss_pred CCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC-----------------------eEEEEeCC-CcEE-EEeccC
Q 016446 215 VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-----------------------TVAVWNFR-GELV-TSFEDH 267 (389)
Q Consensus 215 ~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~-----------------------tIklWd~~-G~~l-~tl~gh 267 (389)
+++++++..+..+.. ...++|+|||+.|+... ++ .|.+||+. +++. ..+..|
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 999999887765541 11337899999775553 44 46899997 7764 234444
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 347 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
... +.+++|+|||++|+++ + ++|++||+.+++.+..+..+.
T Consensus 240 ~~~-----~~~~~~s~dg~~l~~~--~-----------~~v~~~d~~~~~~~~~~~~~~--------------------- 280 (337)
T 1pby_B 240 DVF-----YFSTAVNPAKTRAFGA--Y-----------NVLESFDLEKNASIKRVPLPH--------------------- 280 (337)
T ss_dssp SSC-----EEEEEECTTSSEEEEE--E-----------SEEEEEETTTTEEEEEEECSS---------------------
T ss_pred CCc-----eeeEEECCCCCEEEEe--C-----------CeEEEEECCCCcCcceecCCC---------------------
Confidence 432 6899999999999987 2 799999999999998887543
Q ss_pred cccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 348 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+.+++|+|||+.|++++.|++|++||.
T Consensus 281 --------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 281 --------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp --------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred --------------ceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 6788999999999999999999999983
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=221.95 Aligned_cols=257 Identities=10% Similarity=0.048 Sum_probs=191.4
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCC-CeEEEEecC---CcEEEEEEc-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD---KHVQEIKIS- 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~-g~~l~tl~~---~~V~~vafS- 150 (389)
.++++|++..|+. ..+.. +...+.+++|+ |||++||+++ ++.|++||+.+ +++...... ..|.+++||
T Consensus 22 ~~i~~~d~~~~~~---~~~~~--~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 22 SSIEIFNIRTRKM---RVVWQ--TPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp EEEEEEETTTTEE---EEEEE--ESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred eeEEEEeCCCCce---eeecc--CCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 8899999988875 23333 44567889998 9999999987 88999999998 887655542 578999999
Q ss_pred CCceEEEEecCC-CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEE-EEeCCCcEEEEEC--CCCeEEEEccc
Q 016446 151 PGIMLLIFNRSS-SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNAELMEVSRT 226 (389)
Q Consensus 151 ~g~~la~~~~~s-~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~-~~s~D~tIklWd~--~tg~~~~~l~g 226 (389)
+|++|+++.... ....|.+|++.+++ .+.+..+ ..+..++|+ |++..++ +++.|++++||++ .+++ ...+..
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s-pdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 170 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS-PDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH 170 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC-TTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC-CCCCEEEEEECCCCceEEEEEECCCCc-ceEccc
Confidence 688888775221 12344445556655 4555544 447888997 7888888 4679999999995 3444 456677
Q ss_pred CCCceEEEEEcCCCcEEEEE-c-CCeEEEEeC--CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 227 EFMTPSAFIFLYENQLFLTF-R-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~-s-D~tIklWd~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
|...+..++|+|||++|+.+ . |+.++||++ .++.+..+..|... +..++|||||++|+.++.+..+.....
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG-----DWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE-----EEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc-----cCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 88899999999999987765 4 899999997 47778888888754 789999999999999876410000000
Q ss_pred CCCCeEEEEeCCCCeE--EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 303 GSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 303 s~D~tIklWd~~tg~~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
..++.|++||+.+++. +..+.+|. ..|.+++|||||+.|++++.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQ----------------------------------GTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEEST----------------------------------TTSCSCCBCTTSSEEEEEEE
T ss_pred cCceEEEEEecCCCCceeeeccCCCC----------------------------------cccccceECCCCCEEEEEEe
Confidence 0125799999998876 55555776 47888999999999999987
Q ss_pred CC
Q 016446 381 HG 382 (389)
Q Consensus 381 D~ 382 (389)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=264.82 Aligned_cols=318 Identities=10% Similarity=-0.001 Sum_probs=222.7
Q ss_pred EEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcc---eEEEEEEeeCCCEEEEEEEeec-----CCCcceeeee
Q 016446 8 EIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYAS-----DNFSSLKCRS 77 (389)
Q Consensus 8 ~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~---~v~sv~~spdg~~l~s~s~~~~-----~d~~~l~~~~ 77 (389)
++.|+ +++++ .+.|++|++|+..+|++...+.++. . .|.+++|||||+.|++++...+ .+ .+
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~------~~ 91 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT------AT 91 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE------EE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEcccc-ccccceeeEEECCCCCeEEEEecCceeEEeecc------eE
Confidence 45666 65555 4569999999999999887776542 2 3899999999999999775331 24 78
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C--CcE----------
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D--KHV---------- 144 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~--~~V---------- 144 (389)
+++|++.+|+......+ ...+..++|| |||+.||+++ |++|++||+.+|++..... + ..|
T Consensus 92 i~~~d~~~g~~~~~~~l-----~~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNEL-----PRPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp EEEEETTTTEECCSSCC-----CSSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred EEEEECCCCccccceec-----CcccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence 99999988875211222 1345679998 9999999986 7899999999988754332 2 223
Q ss_pred -------EEEEEc-CCceEEEEecCC-------------------------------CCeeEEEEEcCCCeEE-------
Q 016446 145 -------QEIKIS-PGIMLLIFNRSS-------------------------------SHVPLKILSIEDGTVL------- 178 (389)
Q Consensus 145 -------~~vafS-~g~~la~~~~~s-------------------------------~d~tiklWd~~tG~~l------- 178 (389)
.+++|| ||++||+++.+. ...+|++||+.+|+++
T Consensus 165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC
T ss_pred eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC
Confidence 489999 689998876442 2238999999998863
Q ss_pred -EEEeecCCceeEEEEEecCCCeEEEE-e--CC--CcEEEEE----CCCCeEEEEc----ccCCCceE-----EEEEcCC
Q 016446 179 -KVFYHLLHRNKKVDFIEQFNEKLLVK-Q--EN--ENLQILD----VRNAELMEVS----RTEFMTPS-----AFIFLYE 239 (389)
Q Consensus 179 -~tl~~~~~~~~~v~f~~~~~~~l~~~-s--~D--~tIklWd----~~tg~~~~~l----~gh~~~v~-----sv~fspd 239 (389)
..+.+|.+.+..++|+ ||+ ++++. . .+ ..|.+|| +.+|++...+ .+|..++. .++|+||
T Consensus 245 ~~~~~~~~~~~~~~~~S-pD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWV-TDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CHHHHTSCEEEEEEEES-SSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CccCCCCcceEEEeEEe-CCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1233566778999998 664 55553 2 22 3588899 9999998877 58888887 8999999
Q ss_pred CcEEEE--Ec-CC--eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 240 NQLFLT--FR-NR--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 240 g~~laS--~s-D~--tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|+.|+. +. |+ .|.+||+.+...+.|..+... |..+.|+ ||+.|+..+.+. +..+++++||.+.
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~-----v~~~~~~-d~~~i~~~~~~~------~~~~~~~~l~~~~ 390 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWE-----AINIFRV-TQDSLFYSSNEF------EEYPGRRNIYRIS 390 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSC-----EEEEEEE-CSSEEEEEESCG------GGCTTCBEEEEEE
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceEecccCceE-----EEEEEEE-eCCEEEEEEecC------CCCCceEEEEEEe
Confidence 996543 43 55 677778874336677765432 6788888 888887765320 0014789999875
Q ss_pred C--CeE-EEEec----CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE-ecCC--CcE
Q 016446 315 T--GKC-LAKIN----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRH--GLV 384 (389)
Q Consensus 315 t--g~~-l~tl~----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS-gs~D--~tI 384 (389)
. |+. ...|. +|. ..+..+.|||||+.|+. ++.+ .++
T Consensus 391 ~~~g~~~~~~l~~~~~~~~----------------------------------~~~~~~~~s~dg~~l~~~~s~~~~p~~ 436 (719)
T 1z68_A 391 IGSYPPSKKCVTCHLRKER----------------------------------CQYYTASFSDYAKYYALVCYGPGIPIS 436 (719)
T ss_dssp CSSSSCCEEESSTTTTTTT----------------------------------BCBEEEEECGGGSSEEEEECCBSSCEE
T ss_pred CCCCCCCceeccCccCCCC----------------------------------CceEEEEECCCCCEEEEEcCCCCCCeE
Confidence 3 421 23333 243 47889999999998874 4433 456
Q ss_pred EEcc
Q 016446 385 HVWS 388 (389)
Q Consensus 385 rlW~ 388 (389)
.+||
T Consensus 437 ~l~d 440 (719)
T 1z68_A 437 TLHD 440 (719)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-27 Score=220.22 Aligned_cols=257 Identities=13% Similarity=0.125 Sum_probs=186.8
Q ss_pred eeeeEeEec-cCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC-CeEEEEeCC--CCe--EEEEec-CCcEEEEE
Q 016446 76 RSTKIEYIR-RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLK--NYT--MLYSIS-DKHVQEIK 148 (389)
Q Consensus 76 ~~~~l~~i~-~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D-~tiklWdl~--~g~--~l~tl~-~~~V~~va 148 (389)
..+++|++. .|+. ..+....+...+..++|+ |||++|++++.+ ++|++|++. +++ .+..+. ...+..++
T Consensus 15 ~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T 1ri6_A 15 QQIHVWNLNHEGAL---TLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 90 (343)
T ss_dssp TEEEEEEECTTSCE---EEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CeEEEEEECCCCcE---EEeeeEecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEE
Confidence 788899984 4442 122222344567789998 899988888876 999999997 666 344554 35789999
Q ss_pred Ec-CCceEEEEecCCCCeeEEEEEc---CCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeEEE
Q 016446 149 IS-PGIMLLIFNRSSSHVPLKILSI---EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 222 (389)
Q Consensus 149 fS-~g~~la~~~~~s~d~tiklWd~---~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~t-g~~~~ 222 (389)
|+ +|++|++++. .+++|++||+ .+++.+..+..+ ..+..++|+ |++..+++++ .|++|++||+.+ ++...
T Consensus 91 ~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 91 TDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp ECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EcCCCCEEEEEec--CCCeEEEEECCCCccccccccccCC-CCceEEEEC-CCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 99 5777877643 3579999999 555666776644 457889998 7788888877 999999999998 76542
Q ss_pred ----Eccc-CCCceEEEEEcCCCcEEE-EEc-CCeEEEEeCC---CcE--EEEec----cCcCCcCCCCeeEEEECCCCC
Q 016446 223 ----VSRT-EFMTPSAFIFLYENQLFL-TFR-NRTVAVWNFR---GEL--VTSFE----DHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 223 ----~l~g-h~~~v~sv~fspdg~~la-S~s-D~tIklWd~~---G~~--l~tl~----gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.+.. ....+..++|+|||++|+ ++. +++|++|+++ |++ +..+. +|... ..+..++|+|||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEEECTTSS
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc---CCccceEECCCCC
Confidence 2222 345788999999999664 555 9999999983 443 33332 11111 1256899999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCC--C--CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSIL--T--GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~--t--g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+|+.+.. .|++|++||+. + .+.+..+..+. .
T Consensus 244 ~l~v~~~----------~~~~i~v~d~~~~~~~~~~~~~~~~~~-----------------------------------~ 278 (343)
T 1ri6_A 244 HLYACDR----------TASLITVFSVSEDGSVLSKEGFQPTET-----------------------------------Q 278 (343)
T ss_dssp EEEEEET----------TTTEEEEEEECTTSCCEEEEEEEECSS-----------------------------------S
T ss_pred EEEEEec----------CCCEEEEEEEcCCCCceEEeeeecCCC-----------------------------------c
Confidence 8885543 35899999998 3 34566665543 4
Q ss_pred EEEEEECCCCCEEEEec-CCCcEEEcc
Q 016446 363 ITSLFYDEERNEIYTGN-RHGLVHVWS 388 (389)
Q Consensus 363 V~svafSpdg~~LaSgs-~D~tIrlW~ 388 (389)
+.+++|+|||++|+.++ .|++|++|+
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 77899999999888888 689999994
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=248.88 Aligned_cols=279 Identities=14% Similarity=0.065 Sum_probs=206.5
Q ss_pred cccEEEEEee--ccEEEEEec-CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 3 RTKVIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~-~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
+..|..|.|+ |++||.++. ||+++||++++|++ +.+..++...|++++|||| +.|++++..++++ ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~-------~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAE-------QHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSC-------CEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCc-------ceE
Confidence 3468999999 899999887 99999999975555 5566665468999999999 6555543222232 334
Q ss_pred EeEec---cCCCCCcceeEeeecccCceeEEEecCCC--eEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCc
Q 016446 80 IEYIR---RGKPDSGFALFESESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGI 153 (389)
Q Consensus 80 l~~i~---~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG--~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~ 153 (389)
||.+. .|+. ..+.. .......+|+ ||| .++++++.|+++ |||+++|++........ .+++|| ||+
T Consensus 92 l~~~~~~~~g~~---~~l~~---~~~~~~~~~s-~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~ 162 (582)
T 3o4h_A 92 LFKVNTSRPGEE---QRLEA---VKPMRILSGV-DTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGD 162 (582)
T ss_dssp EEEEETTSTTCC---EECTT---SCSBEEEEEE-ECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETT
T ss_pred EEEEeccCCCcc---ccccC---CCCceeeeeC-CCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCC
Confidence 55443 3332 11211 1112345776 666 467777777766 99999998755444333 899999 699
Q ss_pred eEEEEecCCC-CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCC--cEEEEECCCCeEEEEcccCCCc
Q 016446 154 MLLIFNRSSS-HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMT 230 (389)
Q Consensus 154 ~la~~~~~s~-d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~--tIklWd~~tg~~~~~l~gh~~~ 230 (389)
+||+++.+.. ..+|++||+.+|++. +|..|.+.+..++|+ ||+..|+++..|+ +|++||+.+|++. .+.+|...
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 9986654422 278999999998865 778888889999998 8899999777888 9999999999998 88999988
Q ss_pred eEEEE--------EcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 231 PSAFI--------FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 231 v~sv~--------fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
+..++ |+|||+++++++ |++++||++ |++++++.+ . |.+++|| ||+++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~---~-----v~~~~~s-dg~~l~~~s~~~------ 303 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAPQG---N-----HGRVVLW-RGKLVTSHTSLS------ 303 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCCSS---E-----EEEEEEE-TTEEEEEEEETT------
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccCCC---c-----eEEEEec-CCEEEEEEcCCC------
Confidence 88888 999999999998 999999999 988764432 2 7899999 999999988752
Q ss_pred CCCCCeEEEEeCCCCeEEEEe
Q 016446 302 EGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl 322 (389)
.-..|.+||.. + .+..|
T Consensus 304 --~p~~l~~~d~~-~-~~~~l 320 (582)
T 3o4h_A 304 --TPPRIVSLPSG-E-PLLEG 320 (582)
T ss_dssp --EEEEEEEETTC-C-EEECC
T ss_pred --CCCeEEEEcCC-C-ceEEE
Confidence 22457777765 3 44444
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=244.41 Aligned_cols=286 Identities=12% Similarity=0.122 Sum_probs=208.1
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
..|..+.|+ .+.++.. .++++++||+.+|++.. +..+. ..+.+++|||||+.|+++ .+ .++++|+
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~-~~~~~~~~SpdG~~la~~-----~~------~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTY-LFDTN-EETASLDFSPVGDRVAYV-----RN------HNLYIAR 147 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEE-EECCT-TCCTTCEECTTSSEEEEE-----ET------TEEEEEE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEE-ccCCc-ccccCCcCCCCCCEEEEE-----EC------CeEEEEe
Confidence 358889998 4444444 46999999998887665 44443 678999999999999884 34 6889999
Q ss_pred ecc-----CCCCCcceeEee-------------ecccCceeEEEecCCCeEEEEec------------------------
Q 016446 83 IRR-----GKPDSGFALFES-------------ESLKWPGFVEFDDVNGKVLTYSA------------------------ 120 (389)
Q Consensus 83 i~~-----g~~~~~~~l~~~-------------~~~~~~~~v~Fs~pdG~~Las~s------------------------ 120 (389)
+.. |+.. .+... +...++.+++|| |||++||+++
T Consensus 148 ~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 148 GGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred cCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 988 7752 11110 112234689998 9999999998
Q ss_pred ---------CCCeEEEEeCCCCeEEEEec----CCcEEEEEEc-CCceEEEEecCC--CCeeEEEEEcCCCeEEEEEe-e
Q 016446 121 ---------QDSIYKVFDLKNYTMLYSIS----DKHVQEIKIS-PGIMLLIFNRSS--SHVPLKILSIEDGTVLKVFY-H 183 (389)
Q Consensus 121 ---------~D~tiklWdl~~g~~l~tl~----~~~V~~vafS-~g~~la~~~~~s--~d~tiklWd~~tG~~l~tl~-~ 183 (389)
.+.+|++||++++++..... ...|.+++|| +|++|++++.+. .+.+|++||+.+|++++++. .
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 45789999999998654432 3579999999 688888765332 23599999999995554443 2
Q ss_pred -cCCc---eeEEEEEec--CCCeEEEEeCCCcEEEEECC-CCeEEEEcccCCCceEE-EEEcCCCcEEEEEc--CC----
Q 016446 184 -LLHR---NKKVDFIEQ--FNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSA-FIFLYENQLFLTFR--NR---- 249 (389)
Q Consensus 184 -~~~~---~~~v~f~~~--~~~~l~~~s~D~tIklWd~~-tg~~~~~l~gh~~~v~s-v~fspdg~~laS~s--D~---- 249 (389)
+... +..++|+ | ++..+++++.|++++||++. ++.+++.+.+|...+.. ++|+|||+.|+.++ ++
T Consensus 304 ~~~~~~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp ECSSCCCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred cCCCeECccCCceee-cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 2221 3578998 6 77777778899999999987 78888889999888887 79999998876654 54
Q ss_pred eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 250 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 250 tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
.|..||+++..++.+. |... +.+++|||||++|+..+.+ ....+.|++||+.+++ +..+
T Consensus 383 ~l~~~d~~~~~~~~l~-~~~~-----~~~~~~spdg~~l~~~~~~-------~~~p~~i~l~d~~~~~-~~~~ 441 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT-PESG-----MHRTQLSPDGSAIIDIFQS-------PTVPRKVTVTNIGKGS-HTLL 441 (706)
T ss_dssp EEEEEETTCCCCEESC-CSSS-----EEEEEECTTSSEEEEEEEC-------SSCSCEEEEEESSSCE-EEEE
T ss_pred EEEEEEcCCCCceecc-CCCc-----eEEEEECCCCCEEEEEecC-------CCCCcEEEEEECCCCe-Eeec
Confidence 6666677633355565 4433 7899999999999987653 1223679999999888 4444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=216.57 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=191.5
Q ss_pred cCceeEEEecCCCeEEEEecC-------CCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~-------D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd 171 (389)
..+..++|+ |||++|+.++. +++|.+||+.+++.+.++. +..+.+++|+ +|++++++. ..+++|.+||
T Consensus 41 ~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~--~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGN--TVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEE--TTTTEEEEEE
T ss_pred cCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEe--cCCCEEEEEe
Confidence 346689998 89988777663 5799999999999888876 5668899999 577676664 3457999999
Q ss_pred cCCCeEEEEEeecCCc---------eeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC
Q 016446 172 IEDGTVLKVFYHLLHR---------NKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 240 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~---------~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg 240 (389)
+++|+.+.++..+... ...++|+ |+++++++++ .+++|.+||+++++.+..+..+...+..++|+|||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 9999999999854322 5779998 7788777765 58999999999999999988777778999999999
Q ss_pred cEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 241 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 241 ~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
++|+.+. |+.|.+||.. ++.+..+....... ...+..++|+|||++|+.++.+ ++.|.+||+.+|+.
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~----------~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGK-EHFFINISLDTARQRAFITDSK----------AAEVLVVDTRNGNI 265 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSS-CCCEEEEEEETTTTEEEEEESS----------SSEEEEEETTTCCE
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC-CcccceEEECCCCCEEEEEeCC----------CCEEEEEECCCCcE
Confidence 9999888 9999999996 88888776422110 0126789999999988877653 58999999999999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE-EecCCCcEEEccC
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWSN 389 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La-Sgs~D~tIrlW~~ 389 (389)
+..+..+. . ..++|+|||+.|+ +...+++|.+||.
T Consensus 266 ~~~~~~~~-----------------------------------~-~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 266 LAKVAAPE-----------------------------------S-LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp EEEEECSS-----------------------------------C-CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEcCC-----------------------------------C-ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 98887543 2 3589999999655 5557999999983
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=214.19 Aligned_cols=250 Identities=12% Similarity=0.001 Sum_probs=189.7
Q ss_pred EEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc-CCCCCcceeEe
Q 016446 18 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFE 96 (389)
Q Consensus 18 ~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~-g~~~~~~~l~~ 96 (389)
..+.+++|++||..+|+... +..+ ...|.+++|+|||+.|+++ . + ..+.+|++.. ++. ..++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~-~~~v~~~~~spdg~~l~~~----~-~------~~i~~~d~~~~~~~---~~~~~ 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQT-PELFEAPNWSPDGKYLLLN----S-E------GLLYRLSLAGDPSP---EKVDT 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEE-SSCCEEEEECTTSSEEEEE----E-T------TEEEEEESSSCCSC---EECCC
T ss_pred CCCcceeEEEEeCCCCceee-eccC-CcceEeeEECCCCCEEEEE----c-C------CeEEEEeCCCCCCc---eEecc
Confidence 35689999999998887764 4444 4789999999999999884 2 3 4788999988 765 22222
Q ss_pred eecccCceeEEEecCCCeEEEEec--CCCeEEEEeC--CCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEE
Q 016446 97 SESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDL--KNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl--~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklW 170 (389)
......+..++|+ |||++|++++ .++.++||.+ .+++. ..+. ...+..++|| +|+.|+.+. +.|++++||
T Consensus 81 ~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~ 156 (297)
T 2ojh_A 81 GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCG--IRDQVFDIY 156 (297)
T ss_dssp TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEE--EETTEEEEE
T ss_pred ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEE--CCCCceEEE
Confidence 1112345679998 9999999998 4456667665 45553 4443 4569999999 577777443 234688999
Q ss_pred Ec--CCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 171 SI--EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 171 d~--~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~-tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
++ .+++ ...+..|...+..++|+ |++..+++++ .|+.++||++. .+..+..+..|...+..++|+|||++|+.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGV-ETRLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCC-EEECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCc-ceEcccCCCccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 85 4554 45666677788999998 7788888766 69999999987 677778888899999999999999999988
Q ss_pred c-C-----------CeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 247 R-N-----------RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 247 s-D-----------~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
+ | +.|.+||++ +++ +..+.+|... +..++|||||++|++++.|
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT-----MNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT-----SCSCCBCTTSSEEEEEEEC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc-----cccceECCCCCEEEEEEec
Confidence 7 5 569999997 654 4555577765 6889999999999999876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-25 Score=211.98 Aligned_cols=274 Identities=10% Similarity=0.119 Sum_probs=190.2
Q ss_pred EEEEEe----cCceEEEEecc--cceeee-eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 15 IVFALA----HSGVCAAFSRE--TNRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 15 ~~a~~~----~~gtiklW~~~--tg~~l~-tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
.+++++ .++.+.+|.++ +|++.. ....+. .....++|+|||+ |+.++.. +.+ ..+.+|++..|+
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~-~~p~~~a~spdg~-l~~~~~~-~~~------~~v~~~~~~~g~ 74 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT-QNPTYLALSAKDC-LYSVDKE-DDE------GGIAAWQIDGQT 74 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC-SCCCCEEECTTCE-EEEEEEE-TTE------EEEEEEEEETTE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc-CCcceEEEccCCe-EEEEEec-CCC------ceEEEEEecCCc
Confidence 445553 35677787754 566543 222222 5677899999999 6665542 345 789999997776
Q ss_pred CCCcceeEe-eecccCceeEEEecCCCeEEEEec-CCCeEEEEeCC-CCe--EEEEecC-----------CcEEEEEEcC
Q 016446 88 PDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK-NYT--MLYSISD-----------KHVQEIKISP 151 (389)
Q Consensus 88 ~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~-~g~--~l~tl~~-----------~~V~~vafS~ 151 (389)
. ..+.. ......|..++|+ |||++|++++ .+++|++|++. +|+ .+..+.. ..+.+++|+|
T Consensus 75 ~---~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 75 A---HKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP 150 (347)
T ss_dssp E---EEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred E---EEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence 4 11222 2245567889998 9999888877 78999999995 444 3444421 2489999994
Q ss_pred -CceEEEEecCCCCeeEEEEEcC-CCeEEEE--Eeec-CCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--CeE--E
Q 016446 152 -GIMLLIFNRSSSHVPLKILSIE-DGTVLKV--FYHL-LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AEL--M 221 (389)
Q Consensus 152 -g~~la~~~~~s~d~tiklWd~~-tG~~l~t--l~~~-~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t--g~~--~ 221 (389)
|+ ++++. ..+++|++|++. +|++... +..+ ......++|+ |++.++++. ..+++|++|++.. |+. +
T Consensus 151 dg~-l~v~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 151 DNR-LAVID--LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp TSC-EEEEE--TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCc-EEEEe--CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 66 55553 345799999998 6765432 2322 2245779998 778867775 5889999999874 664 3
Q ss_pred EEcccCC------CceEEEEEcCCCcEE-EEEc-CCeEEEEeCC--C--cEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 222 EVSRTEF------MTPSAFIFLYENQLF-LTFR-NRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 222 ~~l~gh~------~~v~sv~fspdg~~l-aS~s-D~tIklWd~~--G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
..+.... ..+..++|+|||++| ++.. +++|++|+++ | +++.++..|... +..++|||||++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-----PRDFDLDPTEAFVV 301 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-----CCEEEECTTSSEEE
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-----cCeEEECCCCCEEE
Confidence 3333322 458999999999977 5556 9999999985 4 456667665543 58999999999999
Q ss_pred EEecCCCcccccCCCCCeEEEE--eCCCCeEEE
Q 016446 290 SYCKAEPEDQWMEGSAGSINVS--SILTGKCLA 320 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklW--d~~tg~~l~ 320 (389)
+++.+ +++|++| |..+|++..
T Consensus 302 v~~~~----------~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 302 VVNQN----------TDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEETT----------TTEEEEEEECTTTCCEEE
T ss_pred EEEcC----------CCcEEEEEEeCCCCeEEe
Confidence 98765 4899999 667788653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=215.45 Aligned_cols=262 Identities=10% Similarity=0.124 Sum_probs=176.8
Q ss_pred eeeeEeEe--ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeE--EEEe--cCCcEEEE
Q 016446 76 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTM--LYSI--SDKHVQEI 147 (389)
Q Consensus 76 ~~~~l~~i--~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~--l~tl--~~~~V~~v 147 (389)
..+.+|.+ .+|++. .+-.......|..++|+ |||++++++. .+++|++||+.+++. +..+ +...+..+
T Consensus 16 ~~i~v~~~d~~tg~~~---~~~~~~~~~~p~~~a~s-pdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLT---NDGLLAATQNPTYLALS-AKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CEEEEEEEETTTTEEE---EEEEEEECSCCCCEEEC-TTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCEEEEEEcCCCCeEE---EeeeeeccCCcceEEEc-cCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 55666666 456541 11112344567789998 8999444443 279999999988873 3443 35678899
Q ss_pred EEc-CCceEEEEecCCCCeeEEEEEcC-CCe--EEEEEeec---------CCceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 016446 148 KIS-PGIMLLIFNRSSSHVPLKILSIE-DGT--VLKVFYHL---------LHRNKKVDFIEQFNEKLLVKQENENLQILD 214 (389)
Q Consensus 148 afS-~g~~la~~~~~s~d~tiklWd~~-tG~--~l~tl~~~---------~~~~~~v~f~~~~~~~l~~~s~D~tIklWd 214 (389)
+|| +|++|++++. .+++|++|++. +|+ .+..+... ..++..++|+ |++..+++...+++|++||
T Consensus 92 a~spdg~~l~~~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 92 AVDEARQLVYSANY--HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEETTTTEEEEEET--TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeC--CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEEEEE
Confidence 999 5888887753 45899999995 443 34444321 1246779998 6777443445789999999
Q ss_pred CC-CCeEEEE--ccc-CCCceEEEEEcCCCcEEEE-Ec-CCeEEEEeCC---CcE--EEEeccCcCC-cCCCCeeEEEEC
Q 016446 215 VR-NAELMEV--SRT-EFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR---GEL--VTSFEDHLLW-HPDCNTNNIYIT 282 (389)
Q Consensus 215 ~~-tg~~~~~--l~g-h~~~v~sv~fspdg~~laS-~s-D~tIklWd~~---G~~--l~tl~gh~~~-~~~~~v~sv~fS 282 (389)
+. +|++... +.. ....+..++|+|||++|+. .. +++|++|+++ |++ +..+...... .....+..++||
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 98 6765432 222 2336888999999996555 45 8999999985 443 3333322210 000126789999
Q ss_pred CCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CC--eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccc
Q 016446 283 SDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 359 (389)
Q Consensus 283 pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg--~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
|||++|+.++.. +++|++||+. +| +.+..+..|.
T Consensus 249 pdG~~l~v~~~~----------~~~v~v~~~~~~g~~~~~~~~~~~~--------------------------------- 285 (347)
T 3hfq_A 249 HDGHFLYVSNRG----------YNTLAVFAVTADGHLTLIQQISTEG--------------------------------- 285 (347)
T ss_dssp TTSCEEEEEEET----------TTEEEEEEECGGGCEEEEEEEECSS---------------------------------
T ss_pred CCCCEEEEEeCC----------CCEEEEEEECCCCcEEEeEEEecCC---------------------------------
Confidence 999988544432 4899999987 33 5666666654
Q ss_pred cCCEEEEEECCCCCEEEEecCC-CcEEEcc
Q 016446 360 LEDITSLFYDEERNEIYTGNRH-GLVHVWS 388 (389)
Q Consensus 360 ~~~V~svafSpdg~~LaSgs~D-~tIrlW~ 388 (389)
..+.+++|||||++|+.++.+ ++|++|+
T Consensus 286 -~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 286 -DFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp -SCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 367899999999999888765 9999994
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=220.58 Aligned_cols=319 Identities=9% Similarity=0.025 Sum_probs=206.8
Q ss_pred EEecccceeeeeeecCCcceEEE-----EEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc
Q 016446 27 AFSRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 101 (389)
Q Consensus 27 lW~~~tg~~l~tl~~~~~~~v~s-----v~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~ 101 (389)
.++..+|.++..|..+. ..+.+ .+|||||+.|+.++... .. .++.+|++..|+. ..+.. .+..
T Consensus 14 ~~~~~~g~~~~~lt~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~------~~l~~~d~~~g~~---~~lt~-~~~~ 81 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPD-VTCHRNYFYQKCFTRDGSKLLFGGAFD-GP------WNYYLLDLNTQVA---TQLTE-GRGD 81 (388)
T ss_dssp EECTTTCCEEEECSCTT-SCEECCCTTSCCBCTTSCEEEEEECTT-SS------CEEEEEETTTCEE---EECCC-SSCB
T ss_pred EecCCCCcceEEecCCc-ccccchhhcCccCCCCCCEEEEEEcCC-CC------ceEEEEeCCCCce---EEeee-CCCC
Confidence 45677899999998865 45666 88999999999976411 11 3577788887765 22211 1222
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE--EecCCcEEEEE--Ec-CCceEEEEec----------------
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIK--IS-PGIMLLIFNR---------------- 160 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~--tl~~~~V~~va--fS-~g~~la~~~~---------------- 160 (389)
.+..++|| |||+.|+.++.+++|++||+.++++.. ..+...+.... ++ +|.+++....
T Consensus 82 ~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 82 NTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred CccceEEc-CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 22357898 999999999999999999999998654 44455564444 47 5777754321
Q ss_pred ---CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-CCCeEEEEeC------CCcEEEEECCCCeEEEEcccCC-C
Q 016446 161 ---SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQE------NENLQILDVRNAELMEVSRTEF-M 229 (389)
Q Consensus 161 ---~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~------D~tIklWd~~tg~~~~~l~gh~-~ 229 (389)
.+.+..|.+||+.+|+..... .+...+..++|+ | ++.+|+..+. +..|.++|+.+++......++. .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE 238 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE
T ss_pred hhccCCcceEEEEECCCCceEEee-cCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc
Confidence 234578999999999765444 455678899998 7 8888887664 3478888887666554444332 3
Q ss_pred ceEEEEEcCCCcEEEEEc--CC----eEEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 230 TPSAFIFLYENQLFLTFR--NR----TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 230 ~v~sv~fspdg~~laS~s--D~----tIklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
.+..++|||||+.|+..+ ++ +|.+||+. |+ .+..+.++..... ....++|||||++|+....+. ...
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~--~~~ 314 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS--NYDGSLMVGDGSDAPVDVQDD--SGY 314 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE--CTTSSEEEEEECCC------------
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee--cCCCCeEccCCCcceeEeeec--ccc
Confidence 688899999999876654 22 39999997 76 3445554221100 012347999999998653210 000
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN- 379 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs- 379 (389)
+...+..|++||+.+|+. ..|..|...... ...+....+.+++|||||+.|+.++
T Consensus 315 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQ-HRVARHDTSWKV-----------------------FEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp --CCCCEEEEEETTTTEE-EEEEECCCCCCC-----------------------BTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccCCCCEEEEEeccCCce-EEeccccCcccc-----------------------cccccccCCCCccCCCCCCEEEEEec
Confidence 012357999999988775 566666520000 0000001467789999999888766
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
.++..+||.
T Consensus 371 ~~g~~~l~~ 379 (388)
T 3pe7_A 371 VHGKPALYL 379 (388)
T ss_dssp TTSSCEEEE
T ss_pred CCCceeEEE
Confidence 578888884
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=252.07 Aligned_cols=272 Identities=9% Similarity=0.139 Sum_probs=200.9
Q ss_pred EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecc--cCceeEEEecCCCeEEEEecC----
Q 016446 48 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQ---- 121 (389)
Q Consensus 48 ~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~--~~~~~v~Fs~pdG~~Las~s~---- 121 (389)
.+++|+|||+.+++ + .| .++++|++..|+. ..++..... ..+.+++|| |||++||+++.
T Consensus 19 ~~~~~s~dg~~~~~----~-~d------~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQ----S-AD------NNIVLYNIETGQS---YTILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEE----C-TT------SCEEEEESSSCCE---EEEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEE----c-CC------CCEEEEEcCCCcE---EEEEccccccccceeeEEEC-CCCCeEEEEecCcee
Confidence 48899999975554 2 46 6889999998875 334431111 125789998 99999999886
Q ss_pred -----CCeEEEEeCCCCeEE--EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCce----
Q 016446 122 -----DSIYKVFDLKNYTML--YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRN---- 188 (389)
Q Consensus 122 -----D~tiklWdl~~g~~l--~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~---- 188 (389)
|++|++||+.+|+++ ..+ ...+.+++|| ||++||.+. |++|++||+.+|++.+... ++...+
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~----~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY----QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE----TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred EEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE----CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 799999999999873 223 3568999999 688998763 3699999999998875432 322212
Q ss_pred -------------eEEEEEecCCCeEEEEeCCC----------------------------------cEEEEECCCCeEE
Q 016446 189 -------------KKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELM 221 (389)
Q Consensus 189 -------------~~v~f~~~~~~~l~~~s~D~----------------------------------tIklWd~~tg~~~ 221 (389)
..++|+ ||+.+|+.++.|. +|++||+.+++++
T Consensus 159 ~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 489998 8899999987552 8999999999863
Q ss_pred ---E-----EcccCCCceEEEEEcCCCcEEEEEc---C--CeEEEEe----CC-CcEEEEe----ccCcCCcCCCCee--
Q 016446 222 ---E-----VSRTEFMTPSAFIFLYENQLFLTFR---N--RTVAVWN----FR-GELVTSF----EDHLLWHPDCNTN-- 277 (389)
Q Consensus 222 ---~-----~l~gh~~~v~sv~fspdg~~laS~s---D--~tIklWd----~~-G~~l~tl----~gh~~~~~~~~v~-- 277 (389)
+ .+.+|...+.+++|||||+++++.. + ..|.+|| +. |++...+ ++|..+ |.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~ 312 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW-----AGGF 312 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC-----SSSS
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce-----Eccc
Confidence 2 2457999999999999999888853 2 2488899 86 7777666 477776 44
Q ss_pred ---EEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceec
Q 016446 278 ---NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 354 (389)
Q Consensus 278 ---sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
.++|||||+.|+..+.+. +....|.+||+.+++ ...|..+.
T Consensus 313 ~~~~~~~spdg~~l~~~~~~~-------~g~~~l~~~~~~~~~-~~~lt~~~---------------------------- 356 (719)
T 1z68_A 313 FVSTPVFSYDAISYYKIFSDK-------DGYKHIHYIKDTVEN-AIQITSGK---------------------------- 356 (719)
T ss_dssp SCCCCEECTTSSCEEEEEECT-------TSCEEEEEESSCSTT-CEECSCSS----------------------------
T ss_pred cCCccEECCCCCeEEEEEEcc-------CCceEEEEEECCCCc-eEecccCc----------------------------
Confidence 789999999776532221 123578899988777 56666554
Q ss_pred ccccccCCEEEEEECCCCCEEEEecCC-----CcEEEcc
Q 016446 355 TVGEALEDITSLFYDEERNEIYTGNRH-----GLVHVWS 388 (389)
Q Consensus 355 ~~~~~~~~V~svafSpdg~~LaSgs~D-----~tIrlW~ 388 (389)
..|..+.|+ ||+.|+..+.+ ++++||.
T Consensus 357 ------~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 357 ------WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ------SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ------eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 368888888 88877766654 8899996
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=211.46 Aligned_cols=266 Identities=7% Similarity=-0.043 Sum_probs=193.7
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+.++++.+.+++|++||..+|+.++++..+....+..++|+|||+.++.+. ..+ ..+.+|++.+|+...
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~------~~i~~~d~~t~~~~~-- 79 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTF-- 79 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEE--
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC------CcEEEEeCCCCcEEE--
Confidence 778899999999999999999999998865423678999999999766542 355 678899988887511
Q ss_pred eeEeeec-----ccCceeEEEecCCCeEEEEecCC------------CeEEEEeCCCCe---EEEEec-CCcEEEEEEcC
Q 016446 93 ALFESES-----LKWPGFVEFDDVNGKVLTYSAQD------------SIYKVFDLKNYT---MLYSIS-DKHVQEIKISP 151 (389)
Q Consensus 93 ~l~~~~~-----~~~~~~v~Fs~pdG~~Las~s~D------------~tiklWdl~~g~---~l~tl~-~~~V~~vafS~ 151 (389)
.+.... ...+..++|+ |||++|+.++.+ ++|++||+++++ .+..+. ...+.+++|+|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 80 -HANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp -EEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred -EEEcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 111111 1236789998 999999988865 999999998854 334443 34688999995
Q ss_pred -CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC------------------------ceeEEEEEecCCC-------
Q 016446 152 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH------------------------RNKKVDFIEQFNE------- 199 (389)
Q Consensus 152 -g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~------------------------~~~~v~f~~~~~~------- 199 (389)
|. ++++ + ..|++||+.+|+++.+++.+.. ....+++. +++.
T Consensus 158 dg~-l~~~--~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~ 230 (349)
T 1jmx_B 158 DGS-LYVA--G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATAD 230 (349)
T ss_dssp TSC-EEEE--S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCE
T ss_pred CCc-EEEc--c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccc
Confidence 66 5554 2 3499999999999998874320 11234443 1110
Q ss_pred ----eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCC
Q 016446 200 ----KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPD 273 (389)
Q Consensus 200 ----~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~ 273 (389)
++.....++++++|++ ..+...+..++|+| ||++|+.+ +++|.+||+. +++++++..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~---- 296 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT---- 296 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC----
T ss_pred cceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC----
Confidence 1111224455555544 33566889999999 99999988 9999999997 898888874432
Q ss_pred CCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 274 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 274 ~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
+..++|||||++|++++. +++|++||+.+++.+..++.+
T Consensus 297 --~~~~~~s~dg~~l~~~~~-----------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 --YYCVAFDKKGDKLYLGGT-----------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp --CCEEEECSSSSCEEEESB-----------SSEEEEEETTTTEEEEEEECS
T ss_pred --ccceEECCCCCEEEEecC-----------CCeEEEEeccccceeeeeecC
Confidence 479999999999998654 489999999999999998755
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=214.88 Aligned_cols=230 Identities=7% Similarity=0.017 Sum_probs=180.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CC--cEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK--HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~--~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
.++|+ ++++++++++.|++|++||+.+++++.++. .. .+..++|+ +|++++++. ..+++|.+||+.+|+.+.+
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN--NHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe--CCCCcEEEEeCCCCcEEEE
Confidence 36786 899999999999999999999999888776 33 68899999 576666654 3457999999999999988
Q ss_pred EeecC------CceeEEEEEecCCCeEEEEeCC------------CcEEEEECCCCeE---EEEcccCCCceEEEEEcCC
Q 016446 181 FYHLL------HRNKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 181 l~~~~------~~~~~v~f~~~~~~~l~~~s~D------------~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspd 239 (389)
+..+. ..+..++|+ |++.++++++.+ ++|.+||+++++. +..+..+ ..+.+++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d 158 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADD 158 (349)
T ss_dssp EESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTT
T ss_pred EEcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCC
Confidence 87322 226889998 788888888755 9999999999654 3444433 46889999999
Q ss_pred CcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcC----------------------------------------------
Q 016446 240 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHP---------------------------------------------- 272 (389)
Q Consensus 240 g~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~---------------------------------------------- 272 (389)
|++++ ++ +.|++||+. |+++.++..+....+
T Consensus 159 g~l~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GSLYV-AG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SCEEE-ES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred CcEEE-cc-CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99554 43 339999996 998888764420000
Q ss_pred -----------------CCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccc
Q 016446 273 -----------------DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 334 (389)
Q Consensus 273 -----------------~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~ 334 (389)
...+.+++||| ||++|+.+ + +.|++||+.+++.+.++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~-----------~~v~~~d~~~~~~~~~~~~~~-------- 295 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L-----------NRLAKYDLKQRKLIKAANLDH-------- 295 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E-----------SEEEEEETTTTEEEEEEECSS--------
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c-----------CeEEEEECccCeEEEEEcCCC--------
Confidence 00245778889 99999987 3 799999999999998887443
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.+++++|||||+.|++++.|++|++||.
T Consensus 296 ---------------------------~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 296 ---------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ---------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ---------------------------CccceEECCCCCEEEEecCCCeEEEEec
Confidence 5678999999999999999999999983
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=207.80 Aligned_cols=258 Identities=10% Similarity=0.161 Sum_probs=178.6
Q ss_pred eeeeEeEe--ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC----CeEEEEeCCC--CeE--EEEec--CCc
Q 016446 76 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN--YTM--LYSIS--DKH 143 (389)
Q Consensus 76 ~~~~l~~i--~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D----~tiklWdl~~--g~~--l~tl~--~~~ 143 (389)
..+.+|.+ .+|++ ..+... ....|..++|+ |||++|++++.+ ++|++|++.. |++ +.... +..
T Consensus 27 ~~i~~~~~d~~~g~~---~~~~~~-~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGES---LPLSDA-EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp CEEEEEEEETTTCCE---EEEEEE-ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCEEEEEEeCCCCCE---EEeecc-cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 56777766 55665 112212 45567789998 999999998886 8999999864 653 34443 456
Q ss_pred EEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEe---ec-----------CCceeEEEEEecCCCeEEEEe-CCC
Q 016446 144 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HL-----------LHRNKKVDFIEQFNEKLLVKQ-ENE 208 (389)
Q Consensus 144 V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~~-----------~~~~~~v~f~~~~~~~l~~~s-~D~ 208 (389)
...+++ +|++|++++. .+++|.+|++.++..+..+. .+ ..+...++|+ |++.++++++ .++
T Consensus 102 p~~~~~-dg~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~ 177 (361)
T 3scy_A 102 PCYLTT-NGKNIVTANY--SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGTD 177 (361)
T ss_dssp EEEEEE-CSSEEEEEET--TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTTT
T ss_pred cEEEEE-CCCEEEEEEC--CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCCC
Confidence 788888 9988887753 45899999997654433221 11 2234679998 7788777765 689
Q ss_pred cEEEEECCCCe-------E------EEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC-CcE--EEEeccCcCC
Q 016446 209 NLQILDVRNAE-------L------MEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR-GEL--VTSFEDHLLW 270 (389)
Q Consensus 209 tIklWd~~tg~-------~------~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIklWd~~-G~~--l~tl~gh~~~ 270 (389)
+|++|++.... + ......+...+..++|+|||++|+.+ . +++|++||++ |++ +.++......
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence 99999887533 2 12223445678899999999977655 4 8999999996 754 3333322210
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC--CCe--EEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGK--CLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~--tg~--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
. .....++|||||++|+.+..+ .+++|++|++. +|+ .+..+.. .
T Consensus 258 ~--~~~~~i~~spdg~~l~v~~~~---------~~~~i~v~~~~~~~g~~~~~~~~~~-g-------------------- 305 (361)
T 3scy_A 258 A--QGSGDIHLSPDGKYLYASNRL---------KADGVAIFKVDETNGTLTKVGYQLT-G-------------------- 305 (361)
T ss_dssp C--CCEEEEEECTTSSEEEEEECS---------SSCEEEEEEECTTTCCEEEEEEEEC-S--------------------
T ss_pred C--CCcccEEECCCCCEEEEECCC---------CCCEEEEEEEcCCCCcEEEeeEecC-C--------------------
Confidence 0 115799999999999766542 13799999985 566 4444443 2
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEec-CCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~tIrlW~ 388 (389)
..+.+++|||||++|+.++ .+++|++|+
T Consensus 306 --------------~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 306 --------------IHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp --------------SCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred --------------CCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 3677899999999988887 679999974
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-23 Score=201.64 Aligned_cols=276 Identities=14% Similarity=0.135 Sum_probs=185.6
Q ss_pred EEEEEe----cCceEEEEec--ccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc--C
Q 016446 15 IVFALA----HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--G 86 (389)
Q Consensus 15 ~~a~~~----~~gtiklW~~--~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~--g 86 (389)
++.+++ .++.|.+|.+ ++|+....... +......++|+|||+.|++++.++..+ ..+.+|++.. |
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g 87 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTT
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCC
Confidence 445554 4678999976 45654433222 346778899999999999977543334 5778888754 5
Q ss_pred CCCCcceeEeee-cccCceeEEEecCCCeEEEEec-CCCeEEEEeCCCCeEEE----Ee--c----------CCcEEEEE
Q 016446 87 KPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLY----SI--S----------DKHVQEIK 148 (389)
Q Consensus 87 ~~~~~~~l~~~~-~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~g~~l~----tl--~----------~~~V~~va 148 (389)
++ ..+.... ....+..++| ||++|+.++ .+++|++|++.+...+. .+ . ...+.+++
T Consensus 88 ~~---~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 88 TL---HLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp EE---EEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred cE---EEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 43 2222211 2334556776 577666555 68999999997433221 11 1 12468899
Q ss_pred Ec-CCceEEEEecCCCCeeEEEEEcCCCe-------EE-----EEEe-ecCCceeEEEEEecCCCeEEEEe-CCCcEEEE
Q 016446 149 IS-PGIMLLIFNRSSSHVPLKILSIEDGT-------VL-----KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL 213 (389)
Q Consensus 149 fS-~g~~la~~~~~s~d~tiklWd~~tG~-------~l-----~tl~-~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklW 213 (389)
|| +|++|+++. ..+.+|++|++.... +. ..+. .+......++|+ |++..+++++ .+++|++|
T Consensus 162 ~spdg~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 162 ITPDGKYLLADD--LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp ECTTSSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEE
T ss_pred ECCCCCEEEEEe--CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEE
Confidence 99 577777664 345799999887543 21 1222 233456789998 7788787776 79999999
Q ss_pred ECCCCeE--EEE---cccCCCceEEEEEcCCCcEEEEEc-C--CeEEEEeCC---Cc--EEEEeccCcCCcCCCCeeEEE
Q 016446 214 DVRNAEL--MEV---SRTEFMTPSAFIFLYENQLFLTFR-N--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIY 280 (389)
Q Consensus 214 d~~tg~~--~~~---l~gh~~~v~sv~fspdg~~laS~s-D--~tIklWd~~---G~--~l~tl~gh~~~~~~~~v~sv~ 280 (389)
|+.+|++ ++. +..+...+..++|+|||++|+.+. + ++|++|+++ |+ .+..+.. ... +..++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~-----~~~~~ 312 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH-----PRNFI 312 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC-----CCEEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC-----CceEE
Confidence 9998876 222 344556788999999999886654 5 799999984 55 4455543 222 57999
Q ss_pred ECCCCCEEEEEecCCCcccccCCCCCeEEEE--eCCCCeEEEEe
Q 016446 281 ITSDQDLIISYCKAEPEDQWMEGSAGSINVS--SILTGKCLAKI 322 (389)
Q Consensus 281 fSpdG~~laS~s~D~~~~~~~~s~D~tIklW--d~~tg~~l~tl 322 (389)
|||||++|++++.+ +++|++| |..+|++....
T Consensus 313 ~spdg~~l~~~~~~----------~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 313 ITPNGKYLLVACRD----------TNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECTTSCEEEEEETT----------TTEEEEEEECTTTCCEEECS
T ss_pred ECCCCCEEEEEECC----------CCCEEEEEEECCCCcEeecc
Confidence 99999999998754 5899995 66688876543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=211.30 Aligned_cols=316 Identities=9% Similarity=0.017 Sum_probs=203.6
Q ss_pred EEecccceeeeeeecCCcc----eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccC
Q 016446 27 AFSRETNRRICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 27 lW~~~tg~~l~tl~~~~~~----~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~ 102 (389)
..+..+|+.+..|..+... .+.+++|||||+.|+.++... .+ ..+.++++..|+. ..+.. .....
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~-g~------~~l~~~d~~~~~~---~~l~~-~~~~~ 82 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFD-GN------RNYYLLNLETQQA---VQLTE-GKGDN 82 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-SS------CEEEEEETTTTEE---EECCC-SSCBC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecC-CC------ceEEEEECCCCcE---EEeec-CCCCc
Confidence 4477889999888765321 267889999999998865432 22 3567788777764 22211 11111
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--cCCcEEE-------------------EEEc-CCceEEEEe-
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQE-------------------IKIS-PGIMLLIFN- 159 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~~~~V~~-------------------vafS-~g~~la~~~- 159 (389)
...++|| |||+.||..+.+++|++||+.++++.... +..+... ++++ +|..++...
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 83 TFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cccceEC-CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 1237898 99999999999999999999988865433 3344433 3445 344443321
Q ss_pred -cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-CCCeEEEEeCC------CcEEEEECCCCeEEEEcccC-CCc
Q 016446 160 -RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQEN------ENLQILDVRNAELMEVSRTE-FMT 230 (389)
Q Consensus 160 -~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-~~~~l~~~s~D------~tIklWd~~tg~~~~~l~gh-~~~ 230 (389)
....+..|.+||+.+|++..... +...+..+.|+ | ++.+|+..+.+ ..|.+||+.+++.......+ ...
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYR-PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES 239 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEE-TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred ccCCCcceEEEEECCCCcEEeecc-CCcccccceEC-CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence 11455789999999998776654 55778899998 5 67777776533 46899999877765554422 336
Q ss_pred eEEEEEcCCCcEEEEEc-C-----CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC-CCCEEEEEecCCC---c--
Q 016446 231 PSAFIFLYENQLFLTFR-N-----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEP---E-- 297 (389)
Q Consensus 231 v~sv~fspdg~~laS~s-D-----~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~---~-- 297 (389)
+..++|+|||++|+..+ + ++|.+||+. |++.. +..... .. ++||| ||++|+.++.+.| .
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS------EE-EEEECSSSSEEEEEECCC-------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC------CC-CCccCCCCceEEEecCCcceeeccc
Confidence 88899999999887775 3 459999997 76543 222111 23 89999 9999998653210 0
Q ss_pred ccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEE
Q 016446 298 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaS 377 (389)
.......+..|++||+.+|+. ..|..|...... . ..+....+.+++|||||+.|+.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~--~---------------------~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV--L---------------------DGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBC-CEEEECCCCCCC--B---------------------TTBSSTTCCCCEECTTSSEEEE
T ss_pred cccccCCCCcEEEEecccCce-EEccCCCCcccc--c---------------------cccccCCCCCceEccCCCeEEE
Confidence 000011357899999998875 456655410000 0 0000012556799999999887
Q ss_pred ecC-CCcEEEcc
Q 016446 378 GNR-HGLVHVWS 388 (389)
Q Consensus 378 gs~-D~tIrlW~ 388 (389)
++. ++...||.
T Consensus 368 ~s~~~~~~~l~~ 379 (396)
T 3c5m_A 368 TSDFEGVPAIYI 379 (396)
T ss_dssp EECTTSSCEEEE
T ss_pred EecCCCCceEEE
Confidence 774 67777774
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=224.69 Aligned_cols=322 Identities=11% Similarity=0.040 Sum_probs=211.6
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcc----eEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~----~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+...+.++ +++|++. ||+|++||..+|++...+.++... ...+++|||||++|++++.+...- ..=....
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW-RHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS-SSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE-EEccceE
Confidence 345678888 7888886 999999999999998888876522 224588999999999976543221 0011145
Q ss_pred eeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-EecC--CcE----------
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISD--KHV---------- 144 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~~--~~V---------- 144 (389)
+.+||+.+|++. .+. .+.+.+..++|| |||+.||.++ |++|++||+.+|++.+ +..+ ..+
T Consensus 94 ~~~~d~~~~~~~---~l~--~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 94 YDIYDLNKRQLI---TEE--RIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEETTTTEEC---CSS--CCCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred EEEEECCCCcEE---Ecc--cCCCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 679999988752 222 223456789998 9999999985 7899999999888653 2222 223
Q ss_pred -------EEEEEc-CCceEEEEecCCC---------------------------------CeeEEEEEcCC---Ce--EE
Q 016446 145 -------QEIKIS-PGIMLLIFNRSSS---------------------------------HVPLKILSIED---GT--VL 178 (389)
Q Consensus 145 -------~~vafS-~g~~la~~~~~s~---------------------------------d~tiklWd~~t---G~--~l 178 (389)
.+++|| ||++||..+.+.. ..+|++||+.+ |+ ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 248999 6888988753321 23789999999 84 23
Q ss_pred EEEee------cCCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCe----EEEEc----ccCCCceE-----EEE
Q 016446 179 KVFYH------LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE----LMEVS----RTEFMTPS-----AFI 235 (389)
Q Consensus 179 ~tl~~------~~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~----~~~~l----~gh~~~v~-----sv~ 235 (389)
..+.. |...+.+++|+ |++..++... .+.+|++||+.+|+ |.+.. ++|..+|. .++
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 34432 66778999999 6776555542 44589999999998 54433 56877776 789
Q ss_pred EcCCCcEEE-EEc--C--CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe-c--CCCcccccCCCCCe
Q 016446 236 FLYENQLFL-TFR--N--RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC-K--AEPEDQWMEGSAGS 307 (389)
Q Consensus 236 fspdg~~la-S~s--D--~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s-~--D~~~~~~~~s~D~t 307 (389)
|||||+.|+ ..+ + ..|.+||++|...+.|... .+. |..+. ++||+.|+-.+ . +. .....
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~----v~~~~-~~d~~~i~f~~~~~~~~-------~~~~~ 392 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWE----VIGIE-ALTSDYLYYISNEYKGM-------PGGRN 392 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSC----EEEEE-EECSSEEEEEESCGGGC-------TTCBE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEE----EEEEE-EEeCCEEEEEEecCCCC-------CceeE
Confidence 999999877 554 4 4788899985544556543 331 55544 25566655433 2 21 11234
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
|...++..++....|...-. +....+..+.|||||+.++-..
T Consensus 393 ly~v~~~g~~~~~~lt~~~~------------------------------~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELN------------------------------PERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp EEEEETTEEEEEEESSTTTS------------------------------TTTBCBEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCcceeeccccC------------------------------CCCCceEEEEECCCCCEEEEEe
Confidence 55555554433323432100 0003688999999999776443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-23 Score=202.35 Aligned_cols=269 Identities=8% Similarity=0.012 Sum_probs=186.4
Q ss_pred EEEEEecC--ceEEEEec--ccceee--eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec-cCC
Q 016446 15 IVFALAHS--GVCAAFSR--ETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGK 87 (389)
Q Consensus 15 ~~a~~~~~--gtiklW~~--~tg~~l--~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~-~g~ 87 (389)
.++++++. +.|.+|++ ++|++- ..........+..++|+|||++|++++ .+ .+.+|++. +|+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-------~v~~~~~~~~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-------eEEEEEECCCCC
Confidence 45566654 56877764 567642 222211224678899999999998754 32 57788886 776
Q ss_pred CCCcceeEeeecccCceeEEEecCCCe--EEEEec-------------CCCeEEEEeCC-CCeEEEEec------CCcEE
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGK--VLTYSA-------------QDSIYKVFDLK-NYTMLYSIS------DKHVQ 145 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~--~Las~s-------------~D~tiklWdl~-~g~~l~tl~------~~~V~ 145 (389)
+ ..+..+...+.+..++|+ |||+ +|++++ .++++++|++. +|++...+. ...+.
T Consensus 73 ~---~~~~~~~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 73 I---VHEASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp E---EEEEEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred E---EEeeEeecCCCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 5 122332222446679998 8999 455664 69999999997 577654332 35799
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEE--EEEee--cCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC--
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVL--KVFYH--LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-- 216 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l--~tl~~--~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~-- 216 (389)
+++|| +|++|+++.. .+.+|++||+. +|++. ..+.. |......++|+ |++..+++++ .+++|++|++.
T Consensus 149 ~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 149 GMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC
Confidence 99999 5778877643 34699999998 88864 33431 34567899998 7888888776 57999999765
Q ss_pred CCeEE------EEcc----cCCC------ceEEEE-EcCCCcEEEEEc--CC-----eEEEEeCC--CcEEEE---eccC
Q 016446 217 NAELM------EVSR----TEFM------TPSAFI-FLYENQLFLTFR--NR-----TVAVWNFR--GELVTS---FEDH 267 (389)
Q Consensus 217 tg~~~------~~l~----gh~~------~v~sv~-fspdg~~laS~s--D~-----tIklWd~~--G~~l~t---l~gh 267 (389)
+|++. .++. +|.. .+..++ |+|||++|+++. +. +|++|+++ |++... +..+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~ 305 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence 67653 2232 2333 589999 999999887664 33 89999983 776542 3333
Q ss_pred cCCcCCCCeeEEEECC---CCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 268 LLWHPDCNTNNIYITS---DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSp---dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
... ...++||| ||++|++++.+ +++|+||++..+
T Consensus 306 ~~~-----~~~~a~sp~~~dg~~l~v~~~~----------~~~v~v~~~~~~ 342 (365)
T 1jof_A 306 TSG-----GHSNAVSPCPWSDEWMAITDDQ----------EGWLEIYRWKDE 342 (365)
T ss_dssp SCC-----TTCCCEEECTTCTTEEEEECSS----------SCEEEEEEEETT
T ss_pred CCC-----cccceecCCCcCCCEEEEEEcC----------CCeEEEEEEchh
Confidence 322 46899999 89999998764 489999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=207.96 Aligned_cols=245 Identities=12% Similarity=0.046 Sum_probs=172.2
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEec---CCcEEEEEEcC-Cce--EEEEe------cCC----CC
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKISP-GIM--LLIFN------RSS----SH 164 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl~---~~~V~~vafS~-g~~--la~~~------~~s----~d 164 (389)
.|..++|+ |||++|++++.+ +|++|++. +|++..... ...+..++|+| |++ ++++. ... .+
T Consensus 41 ~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 56789998 999999988888 99999997 888754332 13356689995 664 33331 011 46
Q ss_pred eeEEEEEcC-CCeEEEEEee----cCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCeEE--EEcc--cCCCceEE
Q 016446 165 VPLKILSIE-DGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELM--EVSR--TEFMTPSA 233 (389)
Q Consensus 165 ~tiklWd~~-tG~~l~tl~~----~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~-tg~~~--~~l~--gh~~~v~s 233 (389)
+++++|++. +|++..++.. +..+...++|+ |++.+++++. .+++|++||+. +|++. ..+. .|...++.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 899999997 5887766652 45678999998 7888887765 57899999998 88764 2333 34667999
Q ss_pred EEEcCCCcEEEEEc--CCeEEEEeCC---CcEE---EEec-------cCcCCc-CCCCeeEEE-ECCCCCEEEEEecCCC
Q 016446 234 FIFLYENQLFLTFR--NRTVAVWNFR---GELV---TSFE-------DHLLWH-PDCNTNNIY-ITSDQDLIISYCKAEP 296 (389)
Q Consensus 234 v~fspdg~~laS~s--D~tIklWd~~---G~~l---~tl~-------gh~~~~-~~~~v~sv~-fSpdG~~laS~s~D~~ 296 (389)
++|+|||++|+.++ +++|++|+++ |++. +++. +|..+. ....+..++ |||||++|++++.+..
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 99999999887764 7899999763 6653 2222 222100 000168999 9999999987765310
Q ss_pred cccccCCCCCeEEEEeCC-CCeEEEE---ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC--
Q 016446 297 EDQWMEGSAGSINVSSIL-TGKCLAK---INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-- 370 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~~-tg~~l~t---l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-- 370 (389)
....++|++|++. +|++... +..+. ..+.+++|||
T Consensus 278 -----~~~~~~i~v~~~~~~g~~~~~~~~~~~~~----------------------------------~~~~~~a~sp~~ 318 (365)
T 1jof_A 278 -----FELQGYIAGFKLRDCGSIEKQLFLSPTPT----------------------------------SGGHSNAVSPCP 318 (365)
T ss_dssp -----TTSCCEEEEEEECTTSCEEEEEEEEECSS----------------------------------CCTTCCCEEECT
T ss_pred -----CCCCCeEEEEEECCCCCEEEeeeeeecCC----------------------------------CCcccceecCCC
Confidence 0001399999996 7876542 33333 2455689999
Q ss_pred -CCCEEEEecCC-CcEEEcc
Q 016446 371 -ERNEIYTGNRH-GLVHVWS 388 (389)
Q Consensus 371 -dg~~LaSgs~D-~tIrlW~ 388 (389)
||++|++++.+ ++|++|+
T Consensus 319 ~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 319 WSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEE
T ss_pred cCCCEEEEEEcCCCeEEEEE
Confidence 89999999875 9999996
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=234.87 Aligned_cols=255 Identities=10% Similarity=0.061 Sum_probs=178.2
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-------cEEEEE
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------HVQEIK 148 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-------~V~~va 148 (389)
+.+.|.++..|.+. .+..+++|+ |||++|+++ |++|++||+.+|++...+..+ ...+++
T Consensus 3 ~~~tl~~~~~~~~~-----------~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYR-----------LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSC-----------CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCccc-----------ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 34455666666431 123479998 899999997 999999999999987766532 124588
Q ss_pred Ec-CCceEEEEecC------CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 016446 149 IS-PGIMLLIFNRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 149 fS-~g~~la~~~~~------s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~ 221 (389)
|| ||++||.++.+ +..+.+.|||+++|++. .+..|.+.+..++|+ |||.+||.. .|++|.+||+.+|++.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~S-PdG~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEEC-CCCCEEEEE-ECCeEEEEECCCCceE
Confidence 99 68888877532 11145679999999865 466677789999998 888888887 5789999999999877
Q ss_pred EE-cccCCCce-----------------EEEEEcCCCcEEEEEc-CC---------------------------------
Q 016446 222 EV-SRTEFMTP-----------------SAFIFLYENQLFLTFR-NR--------------------------------- 249 (389)
Q Consensus 222 ~~-l~gh~~~v-----------------~sv~fspdg~~laS~s-D~--------------------------------- 249 (389)
+. ..++...+ .+++|||||+.||..+ |.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 64 33443323 3489999999999886 43
Q ss_pred ---eEEEEeCCC---c---EEEEec------cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 250 ---TVAVWNFRG---E---LVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 250 ---tIklWd~~G---~---~l~tl~------gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+|++||+++ . ....+. +|... +.+++|||||+++|..... .+++.+|++||+.
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~wspdg~~~~~~~~r-------~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-----LCDVTWATQERISLQWLRR-------IQNYSVMDICDYD 293 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-----EEEEEEEETTEEEEEEEES-------STTEEEEEEEEEE
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-----EEEEEEeCCCeEEEEEeCC-------CCCEEEEEEEECC
Confidence 478888865 3 333443 25544 7999999999988776542 2345689999999
Q ss_pred CCe----EEEE--e--cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE-Eec-CCCc-
Q 016446 315 TGK----CLAK--I--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGN-RHGL- 383 (389)
Q Consensus 315 tg~----~l~t--l--~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La-Sgs-~D~t- 383 (389)
+|+ |... + .+|...+.. ....+++|||||+.|+ ..| .+|.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~-----------------------------~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGR-----------------------------FRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSS-----------------------------SSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred CCccccceeEEEEeeeccCCceEcc-----------------------------CcCCCceEcCCCCEEEEEEEcCCCce
Confidence 998 5432 2 445421000 0123688999999988 776 4554
Q ss_pred -EEEcc
Q 016446 384 -VHVWS 388 (389)
Q Consensus 384 -IrlW~ 388 (389)
|.+|+
T Consensus 345 ~l~~~~ 350 (740)
T 4a5s_A 345 HICYFQ 350 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 44444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=217.89 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=199.7
Q ss_pred ccEEEEEeeccEEEEEec----CceEEEEecccceeeeeeecCCcceEE---------EEEEe--eCCCE-EEEEEEeec
Q 016446 4 TKVIEIVAARDIVFALAH----SGVCAAFSRETNRRICFLNVSPDEVIR---------SLFYN--KNNDS-LITVSVYAS 67 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~----~gtiklW~~~tg~~l~tl~~~~~~~v~---------sv~~s--pdg~~-l~s~s~~~~ 67 (389)
..|.++.++++.++-.+. +++.+||.+..+...+.|..+. ..++ +.+|+ |||+. |+.++ .
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~---~ 99 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH---F 99 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEB---T
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEE---C
Confidence 467889999665554444 8899999965566677788765 4555 56565 99999 77632 1
Q ss_pred CCCcceeeeeeeEeEec--c-CCCCCcceeEeee---cccCceeEEEecCCCeEEEEecCC----------CeEEEEeCC
Q 016446 68 DNFSSLKCRSTKIEYIR--R-GKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQD----------SIYKVFDLK 131 (389)
Q Consensus 68 ~d~~~l~~~~~~l~~i~--~-g~~~~~~~l~~~~---~~~~~~~v~Fs~pdG~~Las~s~D----------~tiklWdl~ 131 (389)
.+ ..+.++++. . |+. ..+.... +...+..++|| |||+.|++++.| .+|++||+.
T Consensus 100 ~~------~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 100 GD------QRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp TT------CCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CC------CeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 12 334444433 2 442 2222111 22345679998 999999999887 699999998
Q ss_pred C------CeEEEEe-c-CCcEEEEEEc-CCceEEEEecCC-----CCeeEEEEEcC-CC---eEEEEEeecCCceeEEEE
Q 016446 132 N------YTMLYSI-S-DKHVQEIKIS-PGIMLLIFNRSS-----SHVPLKILSIE-DG---TVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 132 ~------g~~l~tl-~-~~~V~~vafS-~g~~la~~~~~s-----~d~tiklWd~~-tG---~~l~tl~~~~~~~~~v~f 193 (389)
+ +++.... . ...+.+++|| ||++||.++.+. ...+|++||+. +| ++.....+|...+..++|
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 8 6654333 2 3578899999 688898776443 23689999999 68 555555566788899999
Q ss_pred EecCCCeEEEEeCCC--cEEEEECCCCeEEEEcccCCCc--------eEEEEEcCCCcEEEEEcCCeEEEE--eCCCcEE
Q 016446 194 IEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGELV 261 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~--tIklWd~~tg~~~~~l~gh~~~--------v~sv~fspdg~~laS~sD~tIklW--d~~G~~l 261 (389)
+ |++..++++..|+ .|.+||+.+|++.+.+.+|... +.+++|+|++++++++++++++|| |+++..+
T Consensus 250 s-pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 250 A-PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL 328 (662)
T ss_dssp C-TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred C-CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence 8 7777555566788 6666677788887776665543 578999999999998866999999 6665568
Q ss_pred EEeccCcCCcCCCCeeEEEECCCCCEE--EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 262 TSFEDHLLWHPDCNTNNIYITSDQDLI--ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 262 ~tl~gh~~~~~~~~v~sv~fSpdG~~l--aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+.|..|... +.++. +|||+.+ ++++.+ ....|.+||+.+|++......|.
T Consensus 329 ~~l~~~~~~-----~~~~~-s~~~~~~~~~~~~~~---------~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 329 VDAAGPWTE-----WAATL-TVSGTRAVGVAASPR---------TAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EECCSSCCE-----EEEEE-EEETTEEEEEEEETT---------EEEEEEEEETTTCCEEEEESCCC
T ss_pred EEecCCCCe-----EEEEE-ecCCCEEEEEEcCCC---------CCCEEEEEECCCCceEEeecCCc
Confidence 889888654 56661 4555543 343332 12356667887888755445554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-22 Score=185.61 Aligned_cols=238 Identities=11% Similarity=0.205 Sum_probs=184.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--------CcEEEEEEc-CCceEEEEecCCCCeeEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--------~~V~~vafS-~g~~la~~~~~s~d~tikl 169 (389)
.+..|.+++|+ |+|+++++.+.++.|++||.+ ++.+..+.. ..+.+++|+ +++.|.++.. +.++.|++
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~-~~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQI 104 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEE
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-CCCCEEEE
Confidence 34467889998 899999998999999999985 777766642 468999995 5555545432 12478999
Q ss_pred EEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc--cCCCceEEEEEcCCCcEEEEE
Q 016446 170 LSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 170 Wd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~--gh~~~v~sv~fspdg~~laS~ 246 (389)
|| .+|+.+.++. .+......+++. +++..+++...++.|++||. .|+.+..+. ++...+..++|+|+|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 7889998885 233567889987 56665555568899999996 566666653 566789999999999999998
Q ss_pred c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 247 R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 247 s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
. ++.|++||.+|+.+.++..+... .....++|+|||+++++.+.+ .+.|++|| .+|+.+.++..|
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~----------~~~i~~~~-~~g~~~~~~~~~ 247 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHN----------NFNLTIFT-QDGQLISALESK 247 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSS----------SCEEEEEC-TTSCEEEEEEES
T ss_pred CCCCEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCC----------CEEEEEEC-CCCCEEEEEccc
Confidence 8 99999999999998888654211 126899999999999987543 13999999 569999988776
Q ss_pred CCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 326 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
.. ...+.+++|+|||+.+++ +.|++|++|+.
T Consensus 248 ~~--------------------------------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 248 VK--------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SC--------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred CC--------------------------------CCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 51 035789999999998888 57999999973
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-22 Score=195.74 Aligned_cols=292 Identities=10% Similarity=0.071 Sum_probs=203.1
Q ss_pred cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee--e
Q 016446 21 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--E 98 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~--~ 98 (389)
.|++|.+||.++|+.+.++..+. .. .++|||||+.|..+....+.....=.-..+.+||+.+++......+-.. .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~-~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAF-NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCE-EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCCeEEEEecCCC-CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 47899999999999999998763 55 9999999999998764321100000116788999887776222111000 0
Q ss_pred cccCceeEEEecCCCeEEEEecC--CCeEEEEeCCCCeEEEE-ecCCcEEEEEEcC-C-ceEEEEecCCCCeeEEEEEcC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~--D~tiklWdl~~g~~l~t-l~~~~V~~vafS~-g-~~la~~~~~s~d~tiklWd~~ 173 (389)
....|..++|| |||++|..+.. +++|.+||+++++.+.+ +.....+.+.+.| + ..+++.+ .|+++.+|++.
T Consensus 106 ~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~---~dg~~~~v~~~ 181 (361)
T 2oiz_A 106 GLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC---GDGGLLTINLG 181 (361)
T ss_dssp BCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE---TTSSEEEEEEC
T ss_pred cCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC---CCCcEEEEEEC
Confidence 12457789998 99999987763 68999999999999988 7654455677775 3 4555443 34788899886
Q ss_pred C-CeEEEEEe------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEEcc--c----CC----CceEEE
Q 016446 174 D-GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR--T----EF----MTPSAF 234 (389)
Q Consensus 174 t-G~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~~l~--g----h~----~~v~sv 234 (389)
+ |++..... .+.++ ..+.++ +++..++..+.+++|.++|+..+.. ...+. . +. .....+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDP-IFIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSC-BCSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCc-eEEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 5 77763321 11111 122333 5566777778899999999976542 22211 0 11 111237
Q ss_pred EEcCCCcEEEEE-c-----------CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 235 IFLYENQLFLTF-R-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 235 ~fspdg~~laS~-s-----------D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
+|+||++.+..+ . .++|.+||+. ++.+.++..|. + ++++|||||++|++++.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p------~~ia~spdg~~l~v~n~-------- 324 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-A------LSMTIDQQRNLMLTLDG-------- 324 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-C------CEEEEETTTTEEEEECS--------
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-e------eEEEECCCCCEEEEeCC--------
Confidence 899997765543 3 2489999996 99999999876 4 79999999999998642
Q ss_pred CCCCCeEEEEeCCCC--eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCE
Q 016446 302 EGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 374 (389)
Q Consensus 302 ~s~D~tIklWd~~tg--~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~ 374 (389)
++|.+||..+| ++++++.++. ..-+.++|+|||++
T Consensus 325 ----~~v~v~D~~t~~l~~~~~i~~~G----------------------------------~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 325 ----GNVNVYDISQPEPKLLRTIEGAA----------------------------------EASLQVQFHPVGGT 361 (361)
T ss_dssp ----SCEEEEECSSSSCEEEEEETTSC----------------------------------SSEEEEEECCCSCC
T ss_pred ----CeEEEEECCCCcceeeEEeccCC----------------------------------CCcEEEEecCCCCC
Confidence 79999999999 9999986654 46778999999974
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=211.03 Aligned_cols=204 Identities=8% Similarity=0.080 Sum_probs=158.5
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCC-----------eEE-----EEec-CCcEEEEEEc-CCceEEEEe-cCCCC
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----------TML-----YSIS-DKHVQEIKIS-PGIMLLIFN-RSSSH 164 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g-----------~~l-----~tl~-~~~V~~vafS-~g~~la~~~-~~s~d 164 (389)
..++++ +++.+|+.++.|+ +++|+...- ... .+++ ...|.+++|| +|.+||++. +++.|
T Consensus 40 n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 40 SLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp BCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred cEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 358998 7888999999887 999875311 111 1222 3579999999 688888522 25678
Q ss_pred eeEEEEEcCCC--------e---EEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE
Q 016446 165 VPLKILSIEDG--------T---VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 233 (389)
Q Consensus 165 ~tiklWd~~tG--------~---~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s 233 (389)
++|+|||+.++ + .++.+.+|...+..|+|++..+..+++++.|++|+|||+++++++....+|...|.+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999999876 2 356667789999999998433678888999999999999999888778889999999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcC--CCCeeEEEECCCCCEEEEEecCCCcccccCCC---CCe
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP--DCNTNNIYITSDQDLIISYCKAEPEDQWMEGS---AGS 307 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~--~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~---D~t 307 (389)
++|+|+|++||+++ |++|++||.+++..+++..|..... ...|.+++|+|++.++++++... +. ...
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d-------g~~~~~~~ 270 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD-------GTLETSPD 270 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT-------CCSSSCCE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC-------CccCCCCc
Confidence 99999999999999 9999999999888888876643211 01389999999999998776420 11 134
Q ss_pred EEEEeCCCC
Q 016446 308 INVSSILTG 316 (389)
Q Consensus 308 IklWd~~tg 316 (389)
+++||+...
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 999999754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-21 Score=188.40 Aligned_cols=244 Identities=12% Similarity=0.106 Sum_probs=187.4
Q ss_pred cccCceeEEEecCCCeEEEEecCC------------------------CeEEEEeCCCCeEEEEec-C--CcEEEEEEcC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSIS-D--KHVQEIKISP 151 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D------------------------~tiklWdl~~g~~l~tl~-~--~~V~~vafS~ 151 (389)
.++.|.+|+|+ |+|+++++.+.+ ++|.+||..+|+.+..+. . .....|+|+|
T Consensus 22 ~l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred ecCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 34567889998 899999998887 489999999999887765 2 4789999994
Q ss_pred -CceEEEEecCCCCeeEEEEEcCCCe--EEEEEe---------ecCCceeEEEEEec-CCCeEEEEe-CCCcEEEEECCC
Q 016446 152 -GIMLLIFNRSSSHVPLKILSIEDGT--VLKVFY---------HLLHRNKKVDFIEQ-FNEKLLVKQ-ENENLQILDVRN 217 (389)
Q Consensus 152 -g~~la~~~~~s~d~tiklWd~~tG~--~l~tl~---------~~~~~~~~v~f~~~-~~~~l~~~s-~D~tIklWd~~t 217 (389)
|.++ ++. ..++.|++||.. |+ .+.++. .+......|+|. | ++..+++.+ .++.|++|| .+
T Consensus 101 ~g~l~-v~d--~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~-~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 101 DGNYW-VTD--VALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVE-PSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp TSCEE-EEE--TTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEEC-TTTCCEEEEECSSCCEEEEEC-TT
T ss_pred CCCEE-EEE--CCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEe-CCCCeEEEEeCCCCCeEEEEc-CC
Confidence 6654 442 445799999964 55 677773 344466889997 5 455556665 699999999 57
Q ss_pred CeEEEEcc----------cCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 218 AELMEVSR----------TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 218 g~~~~~l~----------gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
|+.+.++. ++...+..++|+|+ |+++++.. +++|++||.+ |+++.++...... ..+.+++|+|
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~p- 250 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG---RNVFAISYIP- 250 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT---TCEEEEEEET-
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC---CCcceeeecC-
Confidence 88887774 34456999999998 89999988 9999999998 9999998643221 1268999999
Q ss_pred CCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEE
Q 016446 285 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 364 (389)
Q Consensus 285 G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 364 (389)
|..+++.+. ..++.+.+.+|++||+.+|+++.++.... +++..+.
T Consensus 251 g~~~~~~g~----~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------------------------------~~~~~p~ 295 (329)
T 3fvz_A 251 GFLFAVNGK----PYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------------------------------KHFDMPH 295 (329)
T ss_dssp TEEEEEECC----CCTTCSCCCCEEEEETTTCCEEEEECCSS-------------------------------SCCSSEE
T ss_pred CEEEEeCCC----EEeccCCCcEEEEEEcCCCeEEEEEcCCC-------------------------------CccCCee
Confidence 655555432 22445566899999999999999985211 0115789
Q ss_pred EEEECCCCCEEEEecCCCcEEEcc
Q 016446 365 SLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 365 svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|+|+|||+++++...++.|++|+
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEe
Confidence 999999999999999999999997
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=207.77 Aligned_cols=211 Identities=9% Similarity=-0.010 Sum_probs=161.0
Q ss_pred CeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC-----------eEE-----EEEeecC
Q 016446 123 SIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG-----------TVL-----KVFYHLL 185 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG-----------~~l-----~tl~~~~ 185 (389)
++||+|+.. .. ++...+..++++ .+.++++++.+ + +++|+...- ... .++ .|.
T Consensus 23 ~~vri~~~~-~~----~~~~~~n~lavs~~~~~l~~~~~d---g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (434)
T 2oit_A 23 KKVRIFDSP-EE----LPKERSSLLAVSNKYGLVFAGGAS---G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMK 92 (434)
T ss_dssp CEEECSCCC-SS----CCCSCCBCEEEETTTTEEEEEETT---E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCS
T ss_pred eeEEecCCc-cc----cCCCCccEEEEecCCCEEEEECCC---E-EEEEEchHhhhhcccccCcccccccCccccc-cCC
Confidence 578999752 22 344568889999 57888776433 4 899875310 111 122 244
Q ss_pred CceeEEEEEecCCCeEE----EEeCCCcEEEEECCCC--------e---EEEEcccCCCceEEEEEcCC-CcEEEEEc-C
Q 016446 186 HRNKKVDFIEQFNEKLL----VKQENENLQILDVRNA--------E---LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N 248 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~----~~s~D~tIklWd~~tg--------~---~~~~l~gh~~~v~sv~fspd-g~~laS~s-D 248 (389)
..+..++|+ |++.+|+ +++.|++|+|||++++ + .++.+.+|...|.+++|+|+ +++||+++ |
T Consensus 93 ~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 668999998 7888888 6779999999999876 2 26778899999999999998 89999998 9
Q ss_pred CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 249 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 249 ~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
++|++||+. ++++....+|... |.+++|||||++||+|+.| |+|++||+. ++...++..|..
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~-----v~~v~wspdg~~lasgs~d-----------g~v~iwd~~-~~~~~~~~~~~~ 234 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVA-----VTSVCWSPKGKQLAVGKQN-----------GTVVQYLPT-LQEKKVIPCPPF 234 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGC-----EEEEEECTTSSCEEEEETT-----------SCEEEECTT-CCEEEEECCCTT
T ss_pred CeEEEEEcCCCcceeeccCCCCc-----eeEEEEcCCCCEEEEEcCC-----------CcEEEEccC-CcccccccCCcc
Confidence 999999997 8777777788765 8999999999999999865 999999988 888888887752
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEec-CCC------cEEEcc
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHG------LVHVWS 388 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs-~D~------tIrlW~ 388 (389)
. ..+|...|.+++|+|++.++++.+ .|| .+++|+
T Consensus 235 ~---------------------------~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 235 Y---------------------------ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp C---------------------------CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred c---------------------------CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 0 001113799999999999886533 443 388886
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=194.42 Aligned_cols=277 Identities=9% Similarity=0.048 Sum_probs=185.9
Q ss_pred EEee--ccEEEEEec-Cce--EEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 9 IVAA--RDIVFALAH-SGV--CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 9 i~~~--~~~~a~~~~-~gt--iklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
..|+ |+.||..+. +|. +.+|++++|+..+...++ ...+.+++|||||+.|+.++ .+ ..+++|++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~spdg~~l~~~~----~~------~~l~~~d~ 109 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLSPDDDALFYVK----DG------RNLMRVDL 109 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-CBCSSSCEECTTSSEEEEEE----TT------TEEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-CCCccceEEcCCCCEEEEEe----CC------CeEEEEEC
Confidence 5577 888888887 774 777898888877665554 35566789999999999854 45 68889999
Q ss_pred ccCCCCCcceeEeeecccCcee--EEEecCCCeEEEE----------------------ecCCCeEEEEeCCCCeEEEEe
Q 016446 84 RRGKPDSGFALFESESLKWPGF--VEFDDVNGKVLTY----------------------SAQDSIYKVFDLKNYTMLYSI 139 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~--v~Fs~pdG~~Las----------------------~s~D~tiklWdl~~g~~l~tl 139 (389)
.+|+. ..++. ....++.. ..++ |||++|+. .+.+..|.+||+.+|+.....
T Consensus 110 ~~g~~---~~~~~-~~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 110 ATLEE---NVVYQ-VPAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp TTCCE---EEEEE-CCTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred CCCcc---eeeee-chhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 88875 33433 11122222 3456 89999884 335688999999999865433
Q ss_pred c-CCcEEEEEEcC--CceEEEEecCCC---CeeEEEEEcCCCeEEEEEeecC--CceeEEEEEecCCCeEEEEe-C-C--
Q 016446 140 S-DKHVQEIKISP--GIMLLIFNRSSS---HVPLKILSIEDGTVLKVFYHLL--HRNKKVDFIEQFNEKLLVKQ-E-N-- 207 (389)
Q Consensus 140 ~-~~~V~~vafS~--g~~la~~~~~s~---d~tiklWd~~tG~~l~tl~~~~--~~~~~v~f~~~~~~~l~~~s-~-D-- 207 (389)
. ...+..++||| |++||..+.... ...|.++|+.+++ ++.+..+. ..+..++|+ |++..|+..+ . +
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWV-PDGSALVYVSYLKGSP 262 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEEC-TTSSCEEEEEEETTCC
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceEC-CCCCEEEEEecCCCCC
Confidence 3 56799999998 667776654321 3478888876654 44554333 246778898 7888887754 2 2
Q ss_pred -CcEEEEECCCCeEEE--EcccCCCc---eEEEEEcCCCcEEEEE---------c-CCeEEEEeCCCcEEEEeccCcC-C
Q 016446 208 -ENLQILDVRNAELME--VSRTEFMT---PSAFIFLYENQLFLTF---------R-NRTVAVWNFRGELVTSFEDHLL-W 270 (389)
Q Consensus 208 -~tIklWd~~tg~~~~--~l~gh~~~---v~sv~fspdg~~laS~---------s-D~tIklWd~~G~~l~tl~gh~~-~ 270 (389)
.+|.+||+++|+... .+.++... +..++|+|||+.|+.. . +..|.+||+++..++.|..|.. +
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 342 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSW 342 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcc
Confidence 249999999998543 33432111 1123799999988853 4 6799999998555566776654 1
Q ss_pred c-----CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 271 H-----PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 271 ~-----~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
. ....+.+++|||||++|+..+.. ++...||.+
T Consensus 343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~----------~g~~~l~~~ 380 (388)
T 3pe7_A 343 KVFEGDRQVTHPHPSFTPDDKQILFTSDV----------HGKPALYLA 380 (388)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECT----------TSSCEEEEE
T ss_pred cccccccccCCCCccCCCCCCEEEEEecC----------CCceeEEEE
Confidence 0 00015789999999999988743 466666643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=178.39 Aligned_cols=265 Identities=11% Similarity=0.095 Sum_probs=186.8
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC--
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-- 122 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D-- 122 (389)
..+..+++ ||+.|+.+....... ..-....+.+|++..|+. ..+ ..+..++|| |||+.||..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~---~~l------~~~~~~~~S-pDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNAR---RFI------ENATMPRIS-PDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCE---EEE------ESCEEEEEC-TTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCce---EEc------ccCCCeEEC-CCCCEEEEEEeccC
Confidence 56778888 999998865432111 111236788888887764 223 345679998 999999988764
Q ss_pred -C--eEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecC------------------------CCCeeEEEEEcC
Q 016446 123 -S--IYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRS------------------------SSHVPLKILSIE 173 (389)
Q Consensus 123 -~--tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~------------------------s~d~tiklWd~~ 173 (389)
+ .|.+||+.+|+...... .. +.+++|| +|+.||.++.. .....|.+||+.
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred CCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 3 47788898888654443 34 9999999 68888877532 113689999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC------C-cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------E-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D------~-tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~ 246 (389)
+|++++.+.. . .+..++|+ |++ .++++..+ . ..+||.+.+|++.+.. .+ ..+.++ ||||+.|+..
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~-~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF-EK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE-EE-ESEEEE--EECSSCEEEE
T ss_pred CCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeCCCceEEec-cC-cceeeE--CCCCCEEEEE
Confidence 9998677765 3 78899998 666 55555544 2 5566655577765443 34 555554 9999998877
Q ss_pred c-CC--------eEEEEeCCCcEEEEeccCcCCcCCCCeeE-EEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 247 R-NR--------TVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 247 s-D~--------tIklWd~~G~~l~tl~gh~~~~~~~~v~s-v~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
+ +. .|.+|| .|++...+.+|... +.. ++|+ || ++++++.+ ++++|| +.+|
T Consensus 233 ~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~-----~~~~~~~s-dg-~~~~~~~~-----------~~~~l~-~~~g 292 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG-----VGQAKIKD-GK-VYFTLFEE-----------GSVNLY-IWDG 292 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE-----EEEEEEET-TE-EEEEEEET-----------TEEEEE-EESS
T ss_pred EccccCCccccceEEEEC-CCceEeccccCCcc-----cCCccEEc-Cc-EEEEEecC-----------CcEEEE-EcCC
Confidence 6 43 677788 77766555555543 676 9999 99 88888764 899999 8878
Q ss_pred eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE-EEcc
Q 016446 317 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV-HVWS 388 (389)
Q Consensus 317 ~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI-rlW~ 388 (389)
++...+ .+. ..|.+++|+| +++++++.+++. +||.
T Consensus 293 ~~~~~~-~~~----------------------------------~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 293 EIKPIA-KGR----------------------------------HWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp SEEEEE-CSS----------------------------------SEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred ceEEEe-cCC----------------------------------CeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 775444 344 4799999999 788888877765 7874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-20 Score=174.37 Aligned_cols=273 Identities=11% Similarity=0.097 Sum_probs=186.1
Q ss_pred EEEEEeeccEEEEEe---------cCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 6 VIEIVAARDIVFALA---------HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 6 v~~i~~~~~~~a~~~---------~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
|.+..+-|+.||... .++.+.+|++++|+. +.| ..+.+++|||||+.|+.++...+.. -.
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~-----~~ 85 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-----ENATMPRISPDGKKIAFMRANEEKK-----VS 85 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTT-----EE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-----ccCCCeEECCCCCEEEEEEeccCCC-----cc
Confidence 444444677776653 367899999987764 344 3468899999999999977543111 14
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC---------------------------CeEEEEe
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---------------------------SIYKVFD 129 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---------------------------~tiklWd 129 (389)
++.++++..|+. ..+.... . +..++|| |||+.|+.++.+ ..|.+||
T Consensus 86 ~l~~~~~~~g~~---~~l~~~~--~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 86 EIWVADLETLSS---KKILEAK--N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEEETTTTEE---EEEEEES--E-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred eEEEEECCCCce---EEEEcCC--C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 677778777764 3343322 2 5789998 999999988743 5799999
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCC---e-eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe
Q 016446 130 LKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH---V-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ 205 (389)
Q Consensus 130 l~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d---~-tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s 205 (389)
+.+|+++..+....+..++|||+.+++++..+..+ . ..+||.+.+|++ +.+..+ ..+..+ + |++.+|+..+
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--s-pdg~~l~~~~ 233 (347)
T 2gop_A 159 TESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--D-SDGERILLYG 233 (347)
T ss_dssp TTTTEEEEEEEEETTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--E-ECSSCEEEEE
T ss_pred CCCCeEEeeecCCCcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--C-CCCCEEEEEE
Confidence 99998743333127889999964455554332210 1 345554446665 444444 444443 4 7888888876
Q ss_pred CC--------CcEEEEECCCCeEEEEcccCCCceEE-EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCC
Q 016446 206 EN--------ENLQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 274 (389)
Q Consensus 206 ~D--------~tIklWd~~tg~~~~~l~gh~~~v~s-v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~ 274 (389)
.+ ..|.+|| +|++.+.+.+|...+.. ++|+ || ++++++ |++++|| ++ |++...+. +...
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~---- 303 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW---- 303 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE----
T ss_pred ccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe----
Confidence 43 4688888 88887777888888986 9999 98 888888 9999999 86 87755444 3333
Q ss_pred CeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 275 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 275 ~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|.+++|+| +++++++.+ +...+||.+. |+ +..|..|.
T Consensus 304 -v~~~~~s~--~~~~~~~~~----------~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 304 -IMGFDVDE--IVVYLKETA----------TRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp -EEEEEESS--SEEEEEECS----------SSCCEEEEES-SS-EEECCCTT
T ss_pred -EEeeeeeC--cEEEEEcCC----------CChHHheEeC-Cc-EEEecccc
Confidence 78999999 788877654 2333777776 66 55688776
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=195.11 Aligned_cols=286 Identities=7% Similarity=-0.031 Sum_probs=192.0
Q ss_pred eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCce---------eEEE
Q 016446 38 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---------FVEF 108 (389)
Q Consensus 38 tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~---------~v~F 108 (389)
.+.++ ...+.+++|++++ ++.++.....+ ....||.+..+.. ...+..+. ..+. .++|
T Consensus 18 ~~~~~-~~~~~~~~~s~~~--~~~~~~~~~~~------~~~~l~~~~~~~~--~~~l~~~~--~~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 18 LVASR-SGRPACVGAVGDE--VWWVAPRPAEA------GRATLVRRRADGA--EESALPAP--WNVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHHHT-CSCCEEEEEETTE--EEEEEEETTTT------TEEEEEEECTTSC--EEESSCTT--CCBCCCGGGTCCCCEEE
T ss_pred HHhhc-CCccceeEEcCCe--EEEEecCcccC------CcEEEEEECCCCC--cceeCCCC--ccccccccccCCcccee
Confidence 45555 4789999999764 44444322445 4667777543321 11111100 1112 3556
Q ss_pred e-cCCCeE-EEEecC-CCeEEEEeCC--C-CeEEEEec-------CCcEEEEEEc-CCceEEEEecC-------CCCeeE
Q 016446 109 D-DVNGKV-LTYSAQ-DSIYKVFDLK--N-YTMLYSIS-------DKHVQEIKIS-PGIMLLIFNRS-------SSHVPL 167 (389)
Q Consensus 109 s-~pdG~~-Las~s~-D~tiklWdl~--~-g~~l~tl~-------~~~V~~vafS-~g~~la~~~~~-------s~d~ti 167 (389)
+ +|||+. ||.++. +..|.+|++. + ++ ...+. ...+.+++|| ||++||+++.+ ....+|
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 5 289998 886654 5566666664 2 44 33343 2468899999 68899887644 222689
Q ss_pred EEEEcCC------CeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCC--------CcEEEEECC-CC---eEEEEcccCC
Q 016446 168 KILSIED------GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVR-NA---ELMEVSRTEF 228 (389)
Q Consensus 168 klWd~~t------G~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D--------~tIklWd~~-tg---~~~~~l~gh~ 228 (389)
++||+.+ |++ +.+. .+...+..++|+ ||+.+|+..+.| .+|.+||+. +| ++.+...+|.
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 9999988 665 4454 455677889998 889999987754 389999999 68 6666667778
Q ss_pred CceEEEEEcCCCcEEEEEc-CC--eEEEEeCC-CcEEEEeccCcC-----CcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 229 MTPSAFIFLYENQLFLTFR-NR--TVAVWNFR-GELVTSFEDHLL-----WHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~--tIklWd~~-G~~l~tl~gh~~-----~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
..+..++|+|||++++++. |+ .|.+||+. |++.+.+.+|.. |.++ +.+++|+|||+++++++
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~--~~~~~~~~~~~~~~~~~------- 312 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG--MRWFAPLANGLIAVVHG------- 312 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT--CCSEEECTTSCEEEEEB-------
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc--CceEeEeCCCEEEEEEE-------
Confidence 8999999999999888887 88 56666664 666544443322 1111 46899999999999874
Q ss_pred ccCCCCCeEEEE--eCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE-EECCCCCEEE
Q 016446 300 WMEGSAGSINVS--SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIY 376 (389)
Q Consensus 300 ~~~s~D~tIklW--d~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv-afSpdg~~La 376 (389)
. ++++|| |+.+|+ ++.|..|. ..|.++ ++++++-.++
T Consensus 313 ----~-~~~~l~~~d~~~~~-~~~l~~~~----------------------------------~~~~~~~s~~~~~~~~~ 352 (662)
T 3azo_A 313 ----K-GAAVLGILDPESGE-LVDAAGPW----------------------------------TEWAATLTVSGTRAVGV 352 (662)
T ss_dssp ----S-SSCEEEEEETTTTE-EEECCSSC----------------------------------CEEEEEEEEETTEEEEE
T ss_pred ----c-CccEEEEEECCCCc-EEEecCCC----------------------------------CeEEEEEecCCCEEEEE
Confidence 3 688999 766565 78888876 367777 6666555666
Q ss_pred EecCCCcEEEcc
Q 016446 377 TGNRHGLVHVWS 388 (389)
Q Consensus 377 Sgs~D~tIrlW~ 388 (389)
+++.+...+||.
T Consensus 353 ~~~~~~~~~i~~ 364 (662)
T 3azo_A 353 AASPRTAYEVVE 364 (662)
T ss_dssp EEETTEEEEEEE
T ss_pred EcCCCCCCEEEE
Confidence 777777777763
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=183.52 Aligned_cols=263 Identities=14% Similarity=0.110 Sum_probs=183.1
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec----------CCCeEEEEeCCCCeEEEEec-----
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS----- 140 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s----------~D~tiklWdl~~g~~l~tl~----- 140 (389)
..+.+||..+|++.. .+ ..-..+ .++|| |||++|..+. .|++|.+||+.+++.+.++.
T Consensus 31 ~~v~v~D~~t~~~~~--~i---~~g~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLG--MV---PTAFNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTTCCEEE--EE---ECCEEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCCCeEEE--Ee---cCCCCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 688899988888621 11 111234 79998 9999988775 36789999999999887764
Q ss_pred ---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCC-CeEEEEeCCCcEEEEE
Q 016446 141 ---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILD 214 (389)
Q Consensus 141 ---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~-~~l~~~s~D~tIklWd 214 (389)
+.....++|| +|++|+++... .+++|.+||+++++.+.+ +.. +....+.+. |++ ..+++.+.|+++.+|+
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~-p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNAS-PATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQ-PNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEES-SSEEEEEEETTTTEEEEEEGGG--TTEEEEEEC-TTSSSEEEEEETTSSEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCC-CCCeEEEEECCCCcEEEEEecC--CCcceeEEc-CCCCeeEEEECCCCcEEEEE
Confidence 1356789999 68888877532 247999999999999988 652 233445555 444 5667778999999999
Q ss_pred CCC-CeEEE------EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc--EEEEec------cCcCCcCCCCee
Q 016446 215 VRN-AELME------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFE------DHLLWHPDCNTN 277 (389)
Q Consensus 215 ~~t-g~~~~------~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~--~l~tl~------gh~~~~~~~~v~ 277 (389)
+.. |+... .+..+...+ .+.++|+|..++..+ +++|.++|+. ++ .+.+++ .+..+.+.. ..
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~ 257 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG-YN 257 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC-SS
T ss_pred ECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC-ee
Confidence 875 76652 233333332 345688888888777 9999999996 33 233322 111111110 13
Q ss_pred EEEECCCCCEEEEEec-CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 278 NIYITSDQDLIISYCK-AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 278 sv~fSpdG~~laS~s~-D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
.++|+|||++|..+.. +.. ........++|.+||+.+++.++++..|
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v~~i~~~------------------------------- 305 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRVARIPGR------------------------------- 305 (361)
T ss_dssp CEEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEEEEEECT-------------------------------
T ss_pred EEEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEEEEEecC-------------------------------
Confidence 4899999988877643 100 0000001358999999999999999876
Q ss_pred ccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 357 GEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
. +++++|||||++|++++. ++|.+||.
T Consensus 306 ----~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 306 ----D-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ----T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ----C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 3 678999999999999997 99999983
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=184.23 Aligned_cols=281 Identities=8% Similarity=0.029 Sum_probs=182.5
Q ss_pred EEEEEee--ccEEEEEecC---ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 6 VIEIVAA--RDIVFALAHS---GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~---gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+.++.|+ |+.||..... ..+.+|++++|+... +..++......++|||||+.|+.++ .+ .++++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~----~~------~~l~~ 106 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVK----NE------LNLMK 106 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEE----TT------TEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEE----cC------CcEEE
Confidence 3455677 7887766543 367888998777654 4443323333488999999998854 44 46888
Q ss_pred eEeccCCCCCcceeEeeecccCcee-------------------EEEecCCCeEEEEe-----cCCCeEEEEeCCCCeEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGF-------------------VEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTML 136 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~-------------------v~Fs~pdG~~Las~-----s~D~tiklWdl~~g~~l 136 (389)
|++..|+. ..++. ....+... ++|+ |||+.++.. ..+..|.+||+.++++.
T Consensus 107 ~d~~~~~~---~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 107 VDLETLEE---QVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp EETTTCCE---EEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred EECCCCCc---EEEEe-cccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence 99887764 22332 11111111 2455 777777654 46779999999998865
Q ss_pred EEec-CCcEEEEEEcC--CceEEEEecCCCC---eeEEEEEcCCCeEEEEEeecC--CceeEEEEEecCCCeEEEEeCC-
Q 016446 137 YSIS-DKHVQEIKISP--GIMLLIFNRSSSH---VPLKILSIEDGTVLKVFYHLL--HRNKKVDFIEQFNEKLLVKQEN- 207 (389)
Q Consensus 137 ~tl~-~~~V~~vafS~--g~~la~~~~~s~d---~tiklWd~~tG~~l~tl~~~~--~~~~~v~f~~~~~~~l~~~s~D- 207 (389)
.... ...+..++||| |.+|+..+.+..+ ..|.+||+.+++.. .+..+. ..+..++|+ |++.+|+..+.+
T Consensus 182 ~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~ 259 (396)
T 3c5m_A 182 VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWI-PDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEEC-TTSSCEEEEEEET
T ss_pred eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEEC-CCCCEEEEEecCC
Confidence 4444 56799999997 6667776542221 57899998776543 333221 246778998 788888876533
Q ss_pred ----CcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-----------------CCeEEEEeCC-CcEEEEe
Q 016446 208 ----ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-----------------NRTVAVWNFR-GELVTSF 264 (389)
Q Consensus 208 ----~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-----------------D~tIklWd~~-G~~l~tl 264 (389)
++|.+||+.+|+........ ... ++|+| ||++++.++ +..|.+||+. |++ +.|
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 335 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKL 335 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEE
T ss_pred CCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEc
Confidence 45999999999875543221 122 88999 999998753 3789999997 554 456
Q ss_pred ccCcCCc------CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe--EEEEeCCCCeE
Q 016446 265 EDHLLWH------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS--INVSSILTGKC 318 (389)
Q Consensus 265 ~gh~~~~------~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t--IklWd~~tg~~ 318 (389)
..|.... ....+..++|||||++|+..+.+ ++. |.+.|+.+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~----------~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF----------EGVPAIYIADVPESYK 387 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----------TSSCEEEEEECCTTCC
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecC----------CCCceEEEEEEccccc
Confidence 6554310 00013578999999999988754 244 44555555554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-19 Score=188.96 Aligned_cols=257 Identities=13% Similarity=0.077 Sum_probs=188.4
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..+.+++|||||+.||.++..++.+ -.++++||+.+|+... .... . ..+.+++|| |||+.|+.++.|+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~-----~~~i~v~d~~tg~~~~--~~~~-~--~~~~~~~ws-pDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSD-----WVTIKFMKVDGAKELP--DVLE-R--VKFSCMAWT-HDGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCS-----CEEEEEEETTTTEEEE--EEEE-E--ECSCCEEEC-TTSSEEEEEECCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCc-----eEEEEEEECCCCCCCc--cccc-C--cccceEEEE-eCCCEEEEEEECCc
Confidence 4688999999999999887765443 1488999999887521 1111 1 113569998 99999999998877
Q ss_pred ----------------EEEEeCCCCe----EEEEec--CCcEEEEEEc-CCceEEEEecCCC--CeeEEEEEcCC-----
Q 016446 125 ----------------YKVFDLKNYT----MLYSIS--DKHVQEIKIS-PGIMLLIFNRSSS--HVPLKILSIED----- 174 (389)
Q Consensus 125 ----------------iklWdl~~g~----~l~tl~--~~~V~~vafS-~g~~la~~~~~s~--d~tiklWd~~t----- 174 (389)
|++|++.+++ +++... ...+.+++|| +|++|+.++..+. +..|.+||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 9999998876 334433 2458899999 6888887765333 57899999987
Q ss_pred -Ce-EEEEEeecCCceeEEEEEecCCCeEEEEeC----CCcEEEEECCCCe--EEEEcccCCC--ceEEEEEcCCCcEEE
Q 016446 175 -GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAE--LMEVSRTEFM--TPSAFIFLYENQLFL 244 (389)
Q Consensus 175 -G~-~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~----D~tIklWd~~tg~--~~~~l~gh~~--~v~sv~fspdg~~la 244 (389)
|+ .++.+..+...+.. .|+ ++++.|+..+. +..|.+||+.+++ ..+.+..|.. .+..++|+|++++++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 64 56777766665554 355 67888887653 3479999999875 2344445544 788899999999999
Q ss_pred EEc-CCe--EEEEeC-CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE-E
Q 016446 245 TFR-NRT--VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-L 319 (389)
Q Consensus 245 S~s-D~t--IklWd~-~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~-l 319 (389)
+.. |+. |.+||+ +|++++.+..|... |.+++++|||+.|+-...+ ....++|.+||+.+|++ +
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~d~~~l~~~~ss-------~~~P~~i~~~d~~tg~~~~ 419 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQKKDTEIFYQFTS-------FLSPGIIYHCDLTKEELEP 419 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCTTCSEEEEEEEC-------SSCCCEEEEEETTSSSCCC
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCCCCCEEEEEEeC-------CCCCCEEEEEECCCCccce
Confidence 998 885 556788 59988889877443 7899999999877644322 24568999999999985 5
Q ss_pred EEecCCC
Q 016446 320 AKINATN 326 (389)
Q Consensus 320 ~tl~gH~ 326 (389)
..|+.+.
T Consensus 420 ~~l~~~~ 426 (710)
T 2xdw_A 420 RVFREVT 426 (710)
T ss_dssp EEEEECC
T ss_pred EEeeecc
Confidence 5666544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=174.62 Aligned_cols=237 Identities=10% Similarity=0.096 Sum_probs=183.3
Q ss_pred ccEEEEEee--ccEEEEEecC------------------------ceEEEEecccceeeeeeecCCcceEEEEEEeeCCC
Q 016446 4 TKVIEIVAA--RDIVFALAHS------------------------GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 57 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~------------------------gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~ 57 (389)
..|..|.+. |+++++...+ ++|.+||.++|+.+..+...+......|+++|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 468889998 8888888777 47999999889998877655556789999999999
Q ss_pred EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe--------eecccCceeEEEecC-CCeEEEEec-CCCeEEE
Q 016446 58 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--------SESLKWPGFVEFDDV-NGKVLTYSA-QDSIYKV 127 (389)
Q Consensus 58 ~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~--------~~~~~~~~~v~Fs~p-dG~~Las~s-~D~tikl 127 (389)
.+++ ...+ +.|+.|+ ..|+..... .+. ...+..|..|+|+ | +|+++++.+ .++.|++
T Consensus 104 l~v~----d~~~------~~v~~~~-~~g~~~~~~-~~~~~~~~g~~~~~~~~P~~ia~~-~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 104 YWVT----DVAL------HQVFKLD-PHSKEGPLL-ILGRSMQPGSDQNHFCQPTDVAVE-PSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp EEEE----ETTT------TEEEEEC-TTCSSCCSE-EESBTTBCCCSTTCCSSEEEEEEC-TTTCCEEEEECSSCCEEEE
T ss_pred EEEE----ECCC------CEEEEEe-CCCCeEEEE-EecccCCCCCCccccCCCcEEEEe-CCCCeEEEEeCCCCCeEEE
Confidence 7766 3445 6777888 455420011 111 2345578899998 7 899999987 6999999
Q ss_pred EeCCCCeEEEEec--C----------CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEE
Q 016446 128 FDLKNYTMLYSIS--D----------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVD 192 (389)
Q Consensus 128 Wdl~~g~~l~tl~--~----------~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~ 192 (389)
|| .+|+.+.++. + .....|+|+| ++.|.++. ..+++|++||..+|+++.++. .+......++
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 99 5888887774 1 2489999995 36666664 445799999999999999995 3556678898
Q ss_pred EEecCCCeEEE-Ee-------CCCcEEEEECCCCeEEEEc---ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 193 FIEQFNEKLLV-KQ-------ENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 193 f~~~~~~~l~~-~s-------~D~tIklWd~~tg~~~~~l---~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
|. | +.++. .+ .+.+|++||..+|+++.++ .+|...+..|+|+|||+++++.. +++|++|+++|+
T Consensus 248 ~~-p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 248 YI-P--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EE-T--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ec-C--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 87 4 33333 22 4569999999999999997 47888999999999999999998 999999998753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=193.49 Aligned_cols=285 Identities=11% Similarity=0.065 Sum_probs=200.8
Q ss_pred eccEEEEEecCc---eEEEEecc--cceeeeeee--c---CCcceEEEEEEeeCCCEEEEEEEee-cCCCcceeeeeeeE
Q 016446 12 ARDIVFALAHSG---VCAAFSRE--TNRRICFLN--V---SPDEVIRSLFYNKNNDSLITVSVYA-SDNFSSLKCRSTKI 80 (389)
Q Consensus 12 ~~~~~a~~~~~g---tiklW~~~--tg~~l~tl~--~---~~~~~v~sv~~spdg~~l~s~s~~~-~~d~~~l~~~~~~l 80 (389)
-|+.++-...++ .-.||-+. .|+.-.-+. . .|...+.+++|||||+.||.++..+ +++ .++++
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~------~~i~v 151 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE------AVLHV 151 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC------CEEEE
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce------EEEEE
Confidence 377777776655 46677653 343222222 1 2234799999999999999766544 445 78999
Q ss_pred eEeccCCCCCcceeEeeecccCc--eeEEEecCCCeEEEEecCCCe-------------EEEEeCCCCe----EEEEecC
Q 016446 81 EYIRRGKPDSGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSI-------------YKVFDLKNYT----MLYSISD 141 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~--~~v~Fs~pdG~~Las~s~D~t-------------iklWdl~~g~----~l~tl~~ 141 (389)
||+.+|+.... ...... ..++|| |||+.|++++.|.+ |++|++.+++ +++....
T Consensus 152 ~dl~tg~~~~~------~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 152 IDVDSGEWSKV------DVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp EETTTCCBCSS------CCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred EECCCCCCcCC------cccCcccccceEEe-cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 99999986200 111222 469998 99999999999887 9999998876 4444443
Q ss_pred --CcEEEEEEc-CCceEEEEecCC-CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe----CCCcEEEE
Q 016446 142 --KHVQEIKIS-PGIMLLIFNRSS-SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQIL 213 (389)
Q Consensus 142 --~~V~~vafS-~g~~la~~~~~s-~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s----~D~tIklW 213 (389)
..+.+++|| ||++|++++..+ ....|.+|+..+|+ ++.|..+........+ ++++ ++..+ .+++|.+|
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~--~~g~-l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA--WKDR-FYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE--ETTE-EEEEECTTCTTCEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe--cCCc-EEEEECCCCCCCEEEEE
Confidence 479999999 688888876554 34578888877765 4556555566666655 4566 66654 36899999
Q ss_pred ECCCCeE---EEEcccC-CCceEEEEEcCCCcEEEEEc-CCeEEEEeC--CCcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 214 DVRNAEL---MEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 214 d~~tg~~---~~~l~gh-~~~v~sv~fspdg~~laS~s-D~tIklWd~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
|+.+++. ...+..+ ...+..++|+ +++++++.. |++.+||.+ +|++++.+..+... .|..++|+|||+
T Consensus 301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~----~v~~~~~s~d~~ 375 (695)
T 2bkl_A 301 DPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG----AASNLMGLEDLD 375 (695)
T ss_dssp BTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS----EECCCBSCTTCS
T ss_pred eCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe----EEEEeecCCCCC
Confidence 9998864 4444444 5578889998 888999988 999999866 48888888765221 267899999998
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.|+-...+ ...+++|++||+.+|+ ...|..+.
T Consensus 376 ~l~~~~ss-------~~~P~~v~~~d~~~g~-~~~l~~~~ 407 (695)
T 2bkl_A 376 DAYYVFTS-------FTTPRQIYKTSVSTGK-SELWAKVD 407 (695)
T ss_dssp EEEEEEEE-------TTEEEEEEEEETTTCC-EEEEEECC
T ss_pred EEEEEEcC-------CCCCCEEEEEECCCCc-EEEEecCC
Confidence 87743321 2456899999999888 45666654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-19 Score=164.98 Aligned_cols=236 Identities=12% Similarity=0.210 Sum_probs=176.0
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee-----ecccCceeEEEecCCCeEEEEe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-----ESLKWPGFVEFDDVNGKVLTYS 119 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~-----~~~~~~~~v~Fs~pdG~~Las~ 119 (389)
....+|+++|+|+.+++ ...+ ..+.+|+.. |+. ...|.. .++..|..++|++++|+++++.
T Consensus 30 ~~p~~v~~~~~g~l~v~----~~~~------~~i~~~d~~-g~~---~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~ 95 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVA----DTNN------HRIQIFDKE-GRF---KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE 95 (286)
T ss_dssp SCEEEEEECTTCCEEEE----EGGG------TEEEEECTT-SCE---EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred CCCceEEECCCCCEEEE----ECCC------CEEEEECCC-CcE---EEEecccCCCcccccCceEEEEEcCCCeEEEEc
Confidence 56899999999997766 3345 567778744 654 112211 1345678899955789988887
Q ss_pred cC-CCeEEEEeCCCCeEEEEec---CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEE
Q 016446 120 AQ-DSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVD 192 (389)
Q Consensus 120 s~-D~tiklWdl~~g~~l~tl~---~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~ 192 (389)
.. ++.|++|| .+|+.+.++. ...+.+++|+| |.++ ++. ..++.|++||. +|+.+.++. .+......++
T Consensus 96 ~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 96 RSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRII-VVE--CKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp CGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEE-EEE--TTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred CCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEE-EEE--CCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 54 89999999 6888887774 25799999994 6555 442 33478999995 688888885 3445678899
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CCCceEEEEEcCCCcEEEEEc-CC-eEEEEeCCCcEEEEeccCc
Q 016446 193 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHL 268 (389)
Q Consensus 193 f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~~~v~sv~fspdg~~laS~s-D~-tIklWd~~G~~l~tl~gh~ 268 (389)
+. +++..+++.+.++.|++||. +|+.+..+.. +...+..++|+|+|+++++.. ++ .|++||.+|+++.++..+.
T Consensus 171 ~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VN-DKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV 248 (286)
T ss_dssp EC-SSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS
T ss_pred EC-CCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccC
Confidence 87 55555555568999999998 5677666644 347899999999999999997 76 9999999899999888765
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
... .+.+++|+|||+++++ +. |++|++|++...
T Consensus 249 ~~~---~~~~i~~~~~g~l~vs-~~-----------~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHA---QCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 281 (286)
T ss_dssp CCS---CEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred CCC---cceeEEECCCCcEEEE-CC-----------CCeEEEEEcccc
Confidence 421 2579999999998888 44 489999997643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-19 Score=168.98 Aligned_cols=271 Identities=11% Similarity=0.119 Sum_probs=181.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..|++++|+|++..+++. ..+ ..++.| .++. ...+ ......+..++|+ |||++++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~----~~~------~~~~~~---~~~~--~~~~--~~~~~~~~~~~~~-~~g~l~~~~~~~~~ 67 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPI----ISE------SELQTI---TAEP--WLEI--SKKGLQLEGLNFD-RQGQLFLLDVFEGN 67 (333)
T ss_dssp CCCCBCCSCGGGGCSSCC----CCG------GGSCEE---ECEE--EEEE--ESSCCCEEEEEEC-TTSCEEEEETTTCE
T ss_pred cccceeeecCCccceeEE----eec------ccCccc---ccce--eEEE--eccCccccCcEEC-CCCCEEEEECCCCE
Confidence 568899999999887764 233 233333 1221 0111 1233456789998 89999889999999
Q ss_pred EEEEeCCCCeEEEEe--cCCcEEEEEEc-CCceEEEEecC-CCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCC
Q 016446 125 YKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRS-SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFN 198 (389)
Q Consensus 125 iklWdl~~g~~l~tl--~~~~V~~vafS-~g~~la~~~~~-s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~ 198 (389)
|.+||+++++..... ....+.+++|+ +|.++++...+ ...+.|.+||..+++....+. .+...+..+++. |++
T Consensus 68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d-~~g 146 (333)
T 2dg1_A 68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKG 146 (333)
T ss_dssp EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTS
T ss_pred EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-CCC
Confidence 999999888865443 35789999999 56655543211 011579999999887765554 233457888887 556
Q ss_pred CeEEEEeC------CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcE-EEEEc-CCeEEEEeC--CCcEEEEe----
Q 016446 199 EKLLVKQE------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNF--RGELVTSF---- 264 (389)
Q Consensus 199 ~~l~~~s~------D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIklWd~--~G~~l~tl---- 264 (389)
..+++... .+.|..+|..+++..... .+...+..++|+|||+. +++.+ ++.|.+||+ +|+.+..+
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 55554443 245666666666655433 34456889999999984 45556 899999999 45544322
Q ss_pred ----ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCC
Q 016446 265 ----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 265 ----~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
.++. .+..++|+|||+++++... ++.|.+||. +|+.+..+..+..
T Consensus 226 ~~~~~~~~------~~~~i~~d~~G~l~v~~~~-----------~~~v~~~d~-~g~~~~~~~~~~~------------- 274 (333)
T 2dg1_A 226 PYYFTGHE------GPDSCCIDSDDNLYVAMYG-----------QGRVLVFNK-RGYPIGQILIPGR------------- 274 (333)
T ss_dssp EEECCSSS------EEEEEEEBTTCCEEEEEET-----------TTEEEEECT-TSCEEEEEECTTG-------------
T ss_pred EEecCCCC------CCCceEECCCCCEEEEEcC-----------CCEEEEECC-CCCEEEEEEcCCC-------------
Confidence 2331 1578999999999988654 379999997 6888888765430
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
..+++..+.+++|+|||+.|+.++.+
T Consensus 275 ---------------~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 275 ---------------DEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ---------------GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ---------------ccccccCcceEEECCCCCEEEEEeCc
Confidence 00111368899999999888766655
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-19 Score=187.72 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=190.8
Q ss_pred eeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCCcceeEeee-----cccCceeEEEecCCCeEEEEecCCC--
Q 016446 53 NKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFESE-----SLKWPGFVEFDDVNGKVLTYSAQDS-- 123 (389)
Q Consensus 53 spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~~~~l~~~~-----~~~~~~~v~Fs~pdG~~Las~s~D~-- 123 (389)
+|||+.++.....++.. .-.||-+ ..|+. ..++... +...+.+++|| |||++||.++.++
T Consensus 80 ~~dG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~---~~lld~~~l~~~~~~~~~~~~~S-PDg~~la~~~~~~G~ 148 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQN-------QRVLYVQDSLEGEA---RVFLDPNILSDDGTVALRGYAFS-EDGEYFAYGLSASGS 148 (710)
T ss_dssp EEETTEEEEEEECSSCS-------SCEEEEESSTTSCC---EEEECGGGGCTTSCEEEEEEEEC-TTSSEEEEEEEETTC
T ss_pred EEECCEEEEEEEcCCce-------EEEEEEEcCCCCCc---EEEECHHHhccCCCEEEEEEEEC-CCCCEEEEEEcCCCC
Confidence 39999998866543221 1123333 23332 2232211 11124568998 9999999876544
Q ss_pred ---eEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEecCCC-------------CeeEEEEEcCCCe----EEEEE
Q 016446 124 ---IYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNRSSS-------------HVPLKILSIEDGT----VLKVF 181 (389)
Q Consensus 124 ---tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~-------------d~tiklWd~~tG~----~l~tl 181 (389)
+|++||+.+|+.+. ++....+.+++|| ||+.|+.++.+.. ...|++|++.+++ ++.+.
T Consensus 149 ~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 149 DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred ceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 99999999999765 3433346789999 6889988765533 2349999999987 32232
Q ss_pred eecCCceeEEEEEecCCCeEEEEeC-----CCcEEEEECCC------Ce-EEEEcccCCCceEEEEEcCCCcEEEEEc--
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRN------AE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-- 247 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~-----D~tIklWd~~t------g~-~~~~l~gh~~~v~sv~fspdg~~laS~s-- 247 (389)
..|......+.|+ |++.+|+..+. +..|.+||+.+ ++ ..+.+..|...+... |+|||+.|+..+
T Consensus 229 ~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 229 PDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNR 306 (710)
T ss_dssp TTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred CCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECC
Confidence 2234446788997 78888888653 67899999987 64 466677777777664 888888776554
Q ss_pred C---CeEEEEeCC-Cc--EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC--eEEEEeCCCCeEE
Q 016446 248 N---RTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SINVSSILTGKCL 319 (389)
Q Consensus 248 D---~tIklWd~~-G~--~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~--tIklWd~~tg~~l 319 (389)
+ ..|.+||+. ++ ..++|..|... ..+.+++|+|++++++++..| + .|++||+.+|+++
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~lv~~~~~~-----------g~~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVPEHEK---DVLEWVACVRSNFLVLCYLHD-----------VKNTLQLHDLATGALL 372 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEEEEEEETTTEEEEEEEET-----------TEEEEEEEETTTCCEE
T ss_pred CCCCCEEEEEeCCCCCcccceeccCCCCC---CeEEEEEEEcCCEEEEEEEEC-----------CEEEEEEEECCCCCEE
Confidence 3 369999996 54 34566666542 127889999999999998765 5 4677888789999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE----EecCCCcEEEcc
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGLVHVWS 388 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La----Sgs~D~tIrlW~ 388 (389)
+.|..|. ..|.+++++||++.|+ |....++|.+||
T Consensus 373 ~~l~~~~----------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 373 KIFPLEV----------------------------------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEECCCS----------------------------------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred EecCCCC----------------------------------ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 9998875 4788999999998776 333457888886
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=163.83 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=166.4
Q ss_pred cccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 99 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
....+.+++|+ |+|+ +++++..++.|..||..++...+..+...+.+++|+ +|.++++. ..++.|.+||..+|+
T Consensus 26 ~~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~---~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 26 GFTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACS---HGLRRLERQREPGGE 101 (296)
T ss_dssp CCSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEE---TTTTEEEEECSTTCC
T ss_pred CCccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEe---cCCCeEEEEcCCCCc
Confidence 34456789998 8998 888899999999999987722223345679999999 46655443 334689999998998
Q ss_pred EEEEEeecC----CceeEEEEEecCCCeEEEEeC-----------------CCcEEEEECCCCeEEEEcccCCCceEEEE
Q 016446 177 VLKVFYHLL----HRNKKVDFIEQFNEKLLVKQE-----------------NENLQILDVRNAELMEVSRTEFMTPSAFI 235 (389)
Q Consensus 177 ~l~tl~~~~----~~~~~v~f~~~~~~~l~~~s~-----------------D~tIklWd~~tg~~~~~l~gh~~~v~sv~ 235 (389)
....+.... .....+++. |++..+++.+. .+.|..+|.. |+. ..+..+...+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLA 178 (296)
T ss_dssp EEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEE
Confidence 765543221 234678887 56665555221 2345555554 554 44556777889999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC--CcE---EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR--GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~--G~~---l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
|+|||++|++.+ ++.|.+|+++ |++ .+.+..+... +..++|+|||+++++. + +.|.
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~--~-----------~~v~ 240 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK-----TDGLRVDAGGLIWASA--G-----------DGVH 240 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC-----CCSEEEBTTSCEEEEE--T-----------TEEE
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC-----CCeEEECCCCCEEEEc--C-----------CeEE
Confidence 999999997777 8999999984 766 4555323222 4789999999988876 3 7999
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE-CCCCCEEEEecCCCcEEE
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf-Spdg~~LaSgs~D~tIrl 386 (389)
+||.. |+++..+..+. . +.+++| +|||+.|+.++.++.+|+
T Consensus 241 ~~~~~-g~~~~~~~~~~----------------------------------~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQ----------------------------------T-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EECTT-SCEEEEEECSS----------------------------------C-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EECCC-CCEEEEEECCC----------------------------------C-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 99965 99999998776 4 889999 699999999999877665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-18 Score=180.66 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=197.5
Q ss_pred ccEEEEEecCce---EEEEeccc----ceeeee------eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 13 RDIVFALAHSGV---CAAFSRET----NRRICF------LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 13 ~~~~a~~~~~gt---iklW~~~t----g~~l~t------l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
|+.++-...++. -.||-+.. |..... +...+...+.+++|||||+.||.++..++.+ -.+++
T Consensus 118 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e-----~~~i~ 192 (741)
T 1yr2_A 118 GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD-----WRTVK 192 (741)
T ss_dssp TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS-----EEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc-----eEEEE
Confidence 777776665554 67787642 222222 2222224788999999999999988775554 25789
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe--------------EEEEeCCCCe----EEEEecC
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI--------------YKVFDLKNYT----MLYSISD 141 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t--------------iklWdl~~g~----~l~tl~~ 141 (389)
+||+.+|+.. ...... .....++|| || +.|+.++.|++ |++|++.+++ +++....
T Consensus 193 v~dl~tg~~~---~~~~~~--~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 193 FVGVADGKPL---ADELKW--VKFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEETTTCCEE---EEEEEE--EESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEECCCCCCC---CccCCC--ceeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 9999999862 111001 112368998 89 99999887765 9999998776 3344333
Q ss_pred --CcEEEEEEc-CCceEEEEecCC--CCeeEEEEEcCCC--eEEEEEeecCCceeEEEEEecCCCeEEEEeC----CCcE
Q 016446 142 --KHVQEIKIS-PGIMLLIFNRSS--SHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENL 210 (389)
Q Consensus 142 --~~V~~vafS-~g~~la~~~~~s--~d~tiklWd~~tG--~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~----D~tI 210 (389)
..+.+++|| ||++|+..+... ....|++||+.+| ++++.|..+........+ ++++.|+..+. +..|
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEE
Confidence 268999999 688888776544 3468999999988 436677655555544433 77888888764 4569
Q ss_pred EEEECCCC--eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC--CCcEEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 211 QILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 211 klWd~~tg--~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
.+||+.++ +....+.++...+..++|+ +++++++.. |+..+||.+ +|++++.+..+.. ..|..++++|||
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~----~~v~~~~~s~d~ 418 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGI----GSASGLSGRPGD 418 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSS----CEEEEEECCBTC
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCC----eEEEEeecCCCC
Confidence 99999884 5666666777778888888 778888888 998888865 5888888875322 127899999999
Q ss_pred CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 286 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 286 ~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+.|+-...+ ....++|.+||+.+|+ ...|+.
T Consensus 419 ~~l~~~~ss-------~~~P~~i~~~d~~tg~-~~~l~~ 449 (741)
T 1yr2_A 419 RHAYLSFSS-------FTQPATVLALDPATAK-TTPWEP 449 (741)
T ss_dssp SCEEEEEEE-------TTEEEEEEEEETTTTE-EEECSC
T ss_pred CEEEEEEcC-------CCCCCEEEEEECCCCc-EEEEec
Confidence 866633221 2356899999999888 456654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=188.64 Aligned_cols=276 Identities=10% Similarity=0.043 Sum_probs=187.5
Q ss_pred EEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe--ccCCCCCcceeEeee-----cccCceeEEEecCCCeEEE-----E
Q 016446 51 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFESE-----SLKWPGFVEFDDVNGKVLT-----Y 118 (389)
Q Consensus 51 ~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i--~~g~~~~~~~l~~~~-----~~~~~~~v~Fs~pdG~~La-----s 118 (389)
..+|||+.++.....++.. ...||-. ..|+. ..|+... +...+.+++|| |||++|| +
T Consensus 74 ~p~~dG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~---~~l~d~~~~a~~~~~~~~~~~~S-PDG~~la~~~~~~ 142 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKE-------KAILYWRQGESGQE---KVLLDPNGWSKDGTVSLGTWAVS-WDGKKVAFAQKPN 142 (695)
T ss_dssp CCEEETTEEEEEEECTTCS-------SCEEEEEESTTSCC---EEEECGGGSSSSSCEEEEEEEEC-TTSSEEEEEEEET
T ss_pred CCEEECCEEEEEEEcCCCe-------EEEEEEEcCCCCCc---EEEEchHHhccCCCEEEEEEEEC-CCCCEEEEEECCC
Confidence 3459999999877654322 2233433 23332 2233211 11234578998 9999999 6
Q ss_pred ecCCCeEEEEeCCCCeEE-E-EecCCcEEEEEEc-CCceEEEEecCCC----------CeeEEEEEcCCCe----EEEEE
Q 016446 119 SAQDSIYKVFDLKNYTML-Y-SISDKHVQEIKIS-PGIMLLIFNRSSS----------HVPLKILSIEDGT----VLKVF 181 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~l-~-tl~~~~V~~vafS-~g~~la~~~~~s~----------d~tiklWd~~tG~----~l~tl 181 (389)
|+.+.+|++||+++|+.+ . .+......+++|| ||+.|+.++.+.. ...|++|++.+++ ++...
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence 677889999999999865 2 1222222689999 6888888765432 2349999999987 44444
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCC----cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc----CCeEEE
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAV 253 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~----tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s----D~tIkl 253 (389)
..|...+..+.|+ |++.+|++.+.++ .|.+||..+++.. .+..+...+...++ |+|++++++. ++.|.+
T Consensus 223 ~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 223 TGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFE 299 (695)
T ss_dssp CCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEE
T ss_pred CCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEE
Confidence 4454567899998 7889998877555 6777777667644 44556667777777 5555666554 479999
Q ss_pred EeCC-CcE--EEEeccCc-CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CCeEEEEecCCCCC
Q 016446 254 WNFR-GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCS 328 (389)
Q Consensus 254 Wd~~-G~~--l~tl~gh~-~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg~~l~tl~gH~~~ 328 (389)
||++ ++. .+.+..|. .. .|.+++|+ ++++++++..| ++.+||.+. +|++++.+..+..
T Consensus 300 ~d~~~~~~~~~~~l~~~~~~~----~l~~~~~~-~~~lv~~~~~d-----------g~~~l~~~~~~g~~~~~l~~~~~- 362 (695)
T 2bkl_A 300 VDPAKPARASWKEIVPEDSSA----SLLSVSIV-GGHLSLEYLKD-----------ATSEVRVATLKGKPVRTVQLPGV- 362 (695)
T ss_dssp EBTTBCSGGGCEEEECCCSSC----EEEEEEEE-TTEEEEEEEET-----------TEEEEEEEETTCCEEEECCCSSS-
T ss_pred EeCCCCCccCCeEEecCCCCC----eEEEEEEE-CCEEEEEEEEC-----------CEEEEEEEeCCCCeeEEecCCCC-
Confidence 9996 653 34444443 22 27889998 78888988765 888888654 5888888876631
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE----EecCCCcEEEccC
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGLVHVWSN 389 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La----Sgs~D~tIrlW~~ 389 (389)
..|.+++++|||+.|+ |...+++|.+||.
T Consensus 363 --------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 363 --------------------------------GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp --------------------------------SEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred --------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 3677889999999888 6666788999873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-17 Score=157.52 Aligned_cols=269 Identities=9% Similarity=0.050 Sum_probs=187.8
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
....|..+.|+ ...++..+.+++++.| .++.+..+..+. ..+.+++|+|+|+.+++ +..+ ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~----~~~~------~~i~ 69 (333)
T 2dg1_A 4 SQQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKG-LQLEGLNFDRQGQLFLL----DVFE------GNIF 69 (333)
T ss_dssp --CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSC-CCEEEEEECTTSCEEEE----ETTT------CEEE
T ss_pred cccccceeeecCCccceeEEeecccCccc---ccceeEEEeccC-ccccCcEECCCCCEEEE----ECCC------CEEE
Confidence 34566777777 5566777889999999 477888888765 67899999999996666 4456 6788
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC----CeEEEEeCCCCeEEEEec----CCcEEEEEEcC
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS----DKHVQEIKISP 151 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D----~tiklWdl~~g~~l~tl~----~~~V~~vafS~ 151 (389)
+|+...|++ ..++ ......|.+++|+ |||+++++...+ +.|.+||.++++....+. ...+.+++|+|
T Consensus 70 ~~d~~~~~~---~~~~-~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 70 KINPETKEI---KRPF-VSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp EECTTTCCE---EEEE-ECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred EEeCCCCcE---EEEe-eCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence 888777764 2222 1233557889998 899999887776 799999998877653332 35799999995
Q ss_pred -CceEEEEecC---CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC-CeEEE---
Q 016446 152 -GIMLLIFNRS---SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AELME--- 222 (389)
Q Consensus 152 -g~~la~~~~~---s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t-g~~~~--- 222 (389)
|.++++...+ .....|..+|..+++...... +......++|+ |++..+..+ +.++.|.+||+.+ |+.+.
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~ 222 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFG 222 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence 6555443211 012456666666666544333 33556888887 667766554 5789999999964 44322
Q ss_pred -----EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCC--cCCCCeeEEEECCCCCEEEEEec
Q 016446 223 -----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 223 -----~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~--~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
.+.++ ..+..++++|+|+++++.. ++.|.+||.+|+.+.++..+... +. ..+.+++|+|||+.|..++.
T Consensus 223 ~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~-~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 223 ATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHM-LRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCS-CBCCEEEECTTSCEEEEEEE
T ss_pred ceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccc-cCcceEEECCCCCEEEEEeC
Confidence 12333 4788999999999999887 89999999999888887644320 00 01589999999987765554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=157.70 Aligned_cols=214 Identities=10% Similarity=0.061 Sum_probs=170.7
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEecC---CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CCc
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHR 187 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~~---~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~ 187 (389)
|++|++++.|+.|++||.++|+.+.++.. ..+.+++++ +|++|+ + .+..|+.||. +|+.+.++..+ ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s----~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S----YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E----CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e----CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 78999999999999999999999988873 368999999 466665 3 1368999998 89999999854 246
Q ss_pred eeEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEEcc------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCc
Q 016446 188 NKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 259 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~-D~tIklWd~~tg~~~~~l~------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~ 259 (389)
+.++.++ +++..+++.+. ++.|..+|. +|+.+..+. ++...+..+++.|+|+++++.. ++.|..||.+|+
T Consensus 79 ~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 79 MQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp EEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred ccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCC
Confidence 6788887 67788887776 788888886 788766653 3334567788999999999998 999999999999
Q ss_pred EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCC
Q 016446 260 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 339 (389)
Q Consensus 260 ~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~ 339 (389)
.+.++..+.. ..++.+.|+|++|++++. ++.|..+|..||+.+.++..+...
T Consensus 157 ~~w~~~~~~~------~~~~~~~~~g~~~v~~~~-----------~~~v~~~d~~tG~~~w~~~~~~~~----------- 208 (276)
T 3no2_A 157 LLNSVKLSGT------PFSSAFLDNGDCLVACGD-----------AHCFVQLNLESNRIVRRVNANDIE----------- 208 (276)
T ss_dssp EEEEEECSSC------CCEEEECTTSCEEEECBT-----------TSEEEEECTTTCCEEEEEEGGGSB-----------
T ss_pred EEEEEECCCC------ccceeEcCCCCEEEEeCC-----------CCeEEEEeCcCCcEEEEecCCCCC-----------
Confidence 9999987543 368899999999998654 378999999999999999755310
Q ss_pred CCCccccccccceecccccccCCEEEEEECCCCCEEEEec
Q 016446 340 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
+..+..+.+++..|+|+++++.+
T Consensus 209 -----------------~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 209 -----------------GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -----------------SCCCSEEEEEEECTTSCEEEEEE
T ss_pred -----------------CccccccccceEcCCCCEEEEec
Confidence 00124678888889998888873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-16 Score=166.04 Aligned_cols=320 Identities=12% Similarity=0.073 Sum_probs=221.4
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec--cCCCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS 90 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~--~g~~~~ 90 (389)
+..+++...+++|.++|.+|++.+.++..+ ..+..++|||||++|..++ .| ..+.++|+. +++.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~----~d------g~V~viD~~~~t~~~-- 232 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTT-- 232 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCE--
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEc----CC------CeEEEEECCCCCCcE--
Confidence 467778888999999999999999999865 4678999999999988753 45 578888885 6654
Q ss_pred cceeEeeecccCceeEEEec---CCCeEEEEec-CCCeEEEEeCCCCeEEEEecC------------C-cEEEEEEc-CC
Q 016446 91 GFALFESESLKWPGFVEFDD---VNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD------------K-HVQEIKIS-PG 152 (389)
Q Consensus 91 ~~~l~~~~~~~~~~~v~Fs~---pdG~~Las~s-~D~tiklWdl~~g~~l~tl~~------------~-~V~~vafS-~g 152 (389)
+.....-..|..++||+ |||++|..+. .+++|.++|..+.+++.++.. . .|.++.+| ++
T Consensus 233 ---v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 233 ---VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp ---EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred ---eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 22222333467899985 6998877665 469999999999999877641 1 68899999 45
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEccc----
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT---- 226 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~g---- 226 (389)
..++... ...++|.++|..+.+.+..-. ........+.|. |++.+++++. .+++|.++|.++++++..+.-
T Consensus 310 ~~~vv~~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 310 PEFIVNV--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SEEEEEE--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CEEEEEe--cCCCeEEEEecCCCccceeeeeeccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 5555543 445799999988765444332 223445677887 7888887765 789999999999998776543
Q ss_pred -CCCceEEEEEcCC-CcEEEEEc--CCeEEEEeCC--------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 227 -EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 227 -h~~~v~sv~fspd-g~~laS~s--D~tIklWd~~--------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
|...--.+ |.|+ |.+.+++. +++|-++|.+ .+.++++...... -..|.++|||++|-....-
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----SLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCSEEEEECTT
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----CEEEEeCCCCCeEEEecCC
Confidence 43222223 6887 67777774 7999999985 3578888764322 1357889999999875431
Q ss_pred CCcccccCCCCCeEEEEeCCCC------eEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE
Q 016446 295 EPEDQWMEGSAGSINVSSILTG------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 368 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg------~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf 368 (389)
+++.. -.++|-++|+.+. ++...+.--+ |+.+++.-..+..+.|
T Consensus 461 ~~~~~----~~~~v~v~d~~~~~~~g~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 510 (567)
T 1qks_A 461 NPEAE----ISGSVAVFDIKAMTGDGSDPEFKTLPIAE--------------------------WAGITEGQPRVVQGEF 510 (567)
T ss_dssp CSSHH----HHTCEEEEEGGGCCCSSSCCCEEEECHHH--------------------------HHTCCSSCCEEEEEEE
T ss_pred CCCcc----cCceEEEEECCcccccccCCCcEEecccc--------------------------ccccCCCCcceEeeeE
Confidence 10000 0259999998865 1223332000 1111111258899999
Q ss_pred CCCCCEEEEec-----CCCcEEEcc
Q 016446 369 DEERNEIYTGN-----RHGLVHVWS 388 (389)
Q Consensus 369 Spdg~~LaSgs-----~D~tIrlW~ 388 (389)
+|||+.|.-+. .++.|-+.|
T Consensus 511 ~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 511 NKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCCEEEEEeecCCCCCCcEEEEE
Confidence 99999877663 367887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=153.17 Aligned_cols=269 Identities=10% Similarity=0.043 Sum_probs=189.3
Q ss_pred cCceEEEEecccceeeeeee----cC-CcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 21 HSGVCAAFSRETNRRICFLN----VS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 21 ~~gtiklW~~~tg~~l~tl~----~~-~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
.+++|.++|.+||+..+++. +. -....+.+++. +++..++ . ..+ ..+.++|..++++ +.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~-~---~~~------~~v~viD~~t~~~-----~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIV-V---NNS------HVIFAIDINTFKE-----VG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEE-E---GGG------TEEEEEETTTCCE-----EE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEE-E---cCC------CEEEEEECcccEE-----EE
Confidence 37999999999999887652 11 11356788873 3443333 2 234 5788899888886 22
Q ss_pred eeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CC------cEEEEEEcCCceEEEEecCCCCeeEE
Q 016446 96 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQEIKISPGIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 96 ~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~------~V~~vafS~g~~la~~~~~s~d~tik 168 (389)
+......|..++|+ |||++.++...+++|.+||+++++.+.++. +. ....+++ ++++|.++.. +.+++|.
T Consensus 79 ~i~~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~-~~~~~v~ 155 (328)
T 3dsm_A 79 RITGFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW-SYQNRIL 155 (328)
T ss_dssp EEECCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC-TTCCEEE
T ss_pred EcCCCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC-CCCCEEE
Confidence 22345678899998 789888887789999999999999887775 34 6778888 5566655532 1357999
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC----------CcEEEEECCCCeEEEEcccC-CCceEEEEEc
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN----------ENLQILDVRNAELMEVSRTE-FMTPSAFIFL 237 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D----------~tIklWd~~tg~~~~~l~gh-~~~v~sv~fs 237 (389)
++|+++++.++++... .....+++. +++..+++...+ ++|.++|.++++..+++.-. ...+..++|+
T Consensus 156 viD~~t~~~~~~i~~g-~~p~~i~~~-~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 156 KIDTETDKVVDELTIG-IQPTSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp EEETTTTEEEEEEECS-SCBCCCEEC-TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC
T ss_pred EEECCCCeEEEEEEcC-CCccceEEc-CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe
Confidence 9999999999998742 334677776 555444444333 79999999999988776432 2478999999
Q ss_pred CCCcEEEEEcCCeEEEEeCC-CcEEEE--eccCcCCcCCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 238 YENQLFLTFRNRTVAVWNFR-GELVTS--FEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 238 pdg~~laS~sD~tIklWd~~-G~~l~t--l~gh~~~~~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
||+++|..+.. +|.+||.. +++... +..+.. ....++|+| +|++.++...| -..+++|.+||.
T Consensus 234 ~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~-----~p~gi~vdp~~g~lyva~~~~-------y~~~~~V~v~d~ 300 (328)
T 3dsm_A 234 GTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDT-----KYYGLTVNPNNGEVYVADAID-------YQQQGIVYRYSP 300 (328)
T ss_dssp TTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSS-----CEEEEEECTTTCCEEEEECTT-------SSSEEEEEEECT
T ss_pred cCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCC-----ceEEEEEcCCCCeEEEEcccc-------cccCCEEEEECC
Confidence 99888766533 89999996 775321 221111 258999999 66666765211 012489999998
Q ss_pred CCCeEEEEecC
Q 016446 314 LTGKCLAKINA 324 (389)
Q Consensus 314 ~tg~~l~tl~g 324 (389)
. |+.++++.-
T Consensus 301 ~-g~~~~~i~~ 310 (328)
T 3dsm_A 301 Q-GKLIDEFYV 310 (328)
T ss_dssp T-CCEEEEEEE
T ss_pred C-CCEEEEEEe
Confidence 7 999998853
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-15 Score=137.63 Aligned_cols=267 Identities=10% Similarity=0.058 Sum_probs=187.4
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
..+++|++.|+|+.+++ ...+ ..+..++.. |+. ..+. ......|..++++ |+|.++++...++
T Consensus 15 ~~~~~i~~d~~g~l~v~----~~~~------~~v~~~d~~-~~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWIT----QHKA------NMISCINLD-GKI----TEYPLPTPDAKVMCLTIS-SDGEVWFTENAAN 78 (299)
T ss_dssp CCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-CCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTT
T ss_pred CCccceEECCCCCEEEE----ecCC------CcEEEEcCC-CCe----EEecCCcccCceeeEEEC-CCCCEEEeCCCCC
Confidence 68999999999997766 2233 456666655 553 1121 1123457789998 8999999888789
Q ss_pred eEEEEeCCCCeE-EEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEE-eecCCceeEEEEEecCC
Q 016446 124 IYKVFDLKNYTM-LYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 124 tiklWdl~~g~~-l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl-~~~~~~~~~v~f~~~~~ 198 (389)
.|..||.+ ++. ...+. ...+.++++.+ |... .+.. .++.|..||. +|+..... ..+......+++. +++
T Consensus 79 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~~g 152 (299)
T 2z2n_A 79 KIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIW-FTEM--NGNRIGRITD-DGKIREYELPNKGSYPSFITLG-SDN 152 (299)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEE-EEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred eEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEE-EEec--CCceEEEECC-CCCEEEecCCCCCCCCceEEEc-CCC
Confidence 99999985 553 33333 35799999995 5544 4432 2468999998 77765432 2334556788876 555
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEE-eccCcCCcCCCC
Q 016446 199 EKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 275 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~t-l~gh~~~~~~~~ 275 (389)
..+++...++.|..||. +|+.... +..+...+..+++.|+|++.++.. ++.|..||.+|+.... +..+.. .
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-----~ 226 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA-----R 226 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-----C
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC-----C
Confidence 55554557899999999 8887654 455566799999999999999887 8999999997765432 222222 2
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceec
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 354 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+.+++++|+|++.++... ++.|..||. +|+.... +.++.
T Consensus 227 ~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~~~---------------------------- 266 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWG-----------ANKIGRLTS-NNIIEEYPIQIKS---------------------------- 266 (299)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEEET-TTEEEEEECSSSS----------------------------
T ss_pred ceeEEECCCCCEEEeccC-----------CceEEEECC-CCceEEEeCCCCC----------------------------
Confidence 689999999998887533 379999997 5764322 22222
Q ss_pred ccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 355 TVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 355 ~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
..+.++++ ++|+++++.+.++.+++
T Consensus 267 ------~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 267 ------AEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ------CCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ------CccceEEe-cCCCEEEEecCCcEEEE
Confidence 47899999 99999998876766665
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=149.41 Aligned_cols=234 Identities=9% Similarity=-0.054 Sum_probs=167.6
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
+..+..+..+ .....+++|+|+|+.|+.+ +..+ ..+..|+...+ . ..|. .....|..++|+ ||
T Consensus 17 ~~~~~~l~~~-~~~~eg~~~d~~g~~l~~~---~~~~------~~i~~~~~~~~-~----~~~~-~~~~~~~~l~~~-~d 79 (296)
T 3e5z_A 17 GAEARRLADG-FTWTEGPVYVPARSAVIFS---DVRQ------NRTWAWSDDGQ-L----SPEM-HPSHHQNGHCLN-KQ 79 (296)
T ss_dssp TCCCEEEECC-CSSEEEEEEEGGGTEEEEE---EGGG------TEEEEEETTSC-E----EEEE-SSCSSEEEEEEC-TT
T ss_pred CCcEEEEecC-CccccCCeEeCCCCEEEEE---eCCC------CEEEEEECCCC-e----EEEE-CCCCCcceeeEC-CC
Confidence 5555566654 3788999999999944432 3344 56777886554 2 1232 234557789998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec------CCcEEEEEEcC-CceEEEEec--------------CCCCeeEEEEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKISP-GIMLLIFNR--------------SSSHVPLKILS 171 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~------~~~V~~vafS~-g~~la~~~~--------------~s~d~tiklWd 171 (389)
|+++++...++.|.+||.++|+...... ...+.+++|+| |.++++.+. ....+.|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 9999988888999999998988653332 13567899994 665554210 00112444455
Q ss_pred cCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCeE---EEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 172 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL---MEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~-tg~~---~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
.. |+. ..+..+......++|+ |++..+++.+.+++|++||+. +|++ .+.+..+...+..++|.|+|+++++.
T Consensus 160 ~~-g~~-~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PD-GTL-SAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TT-SCE-EEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CC-CCE-EEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 43 554 4445555667899997 778888556789999999997 6766 44455566678899999999998888
Q ss_pred CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE-CCCCCEEEEEec
Q 016446 248 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 293 (389)
Q Consensus 248 D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f-SpdG~~laS~s~ 293 (389)
++.|.+||.+|+++..+..+.. +.+++| +|||++|..++.
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TTEEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEET
T ss_pred CCeEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcC
Confidence 8999999999999999887654 378999 799999988765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=175.72 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=182.9
Q ss_pred EeeCCCEEEEEEEeecCCCcceeeeeeeEeEec-----cCCCCCcceeEee-----ecccCceeEEEecCCCeEEEEecC
Q 016446 52 YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-----RGKPDSGFALFES-----ESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 52 ~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~-----~g~~~~~~~l~~~-----~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
.+|||+.++.....++.+ ...||-.. .|+. ..|+.. ++...+.+++|| |||++||.++.
T Consensus 114 p~pdG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~---~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~ 182 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMN-------QSQLLVRPADAPVGTKG---RVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQ 182 (741)
T ss_dssp CEEETTEEEEEEECSSCS-------SCEEEEEETTSCTTCCC---EEEECGGGCC----EEEEEEEEC-TTSSEEEEEEE
T ss_pred CEEECCEEEEEEEcCCCe-------EEEEEEEcCCccCCCCC---EEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEc
Confidence 359999999977654432 23344432 2332 233221 111134568998 99999998775
Q ss_pred C-----CeEEEEeCCCCeEEEE-ecCCcEEEEEEcCCceEEEEecCCC-----------CeeEEEEEcCCCe----EEEE
Q 016446 122 D-----SIYKVFDLKNYTMLYS-ISDKHVQEIKISPGIMLLIFNRSSS-----------HVPLKILSIEDGT----VLKV 180 (389)
Q Consensus 122 D-----~tiklWdl~~g~~l~t-l~~~~V~~vafS~g~~la~~~~~s~-----------d~tiklWd~~tG~----~l~t 180 (389)
+ .+|++||+++|+.+.. +....+.+++|||++.|+.++.+.. ...|++|++.+++ ++..
T Consensus 183 ~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 183 DGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp ETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred CCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 4 5799999999997543 2222236799994488888765433 3459999998886 3322
Q ss_pred EeecCCceeEEEEEecCCCeEEEEeCC-----CcEEEEECCCC--eEEEEcccCCCceEEEEEcCCCcEEEEEc-C----
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---- 248 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg--~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---- 248 (389)
...+...+..+.|+ ||+.+|+..+.+ ..|.+||+.++ ++.+.+..+...+....+ |+|+.|+..+ +
T Consensus 263 ~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 263 TPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPL 340 (741)
T ss_dssp CTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTT
T ss_pred cCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCC
Confidence 22222346788887 788888887644 48999999988 525566666666666644 8888777665 3
Q ss_pred CeEEEEeCC-C-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC-CCeEEEEecCC
Q 016446 249 RTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINAT 325 (389)
Q Consensus 249 ~tIklWd~~-G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~-tg~~l~tl~gH 325 (389)
+.|.+||++ + ...+.+..|... .+.+++|+ ++++++++..| +..+||.+. +|++++.|..+
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~~----~l~~~~~~-~~~lv~~~~~d-----------g~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESKD----NLESVGIA-GNRLFASYIHD-----------AKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCSS----EEEEEEEE-BTEEEEEEEET-----------TEEEEEEEETTSCEEEECBCS
T ss_pred CEEEEEeCCCCccccEEEecCCCC----eEEEEEEE-CCEEEEEEEEC-----------CEEEEEEEeCCCCceeeccCC
Confidence 359999997 4 344444444332 26778887 67788887764 787777553 57788877654
Q ss_pred CCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE----EecCCCcEEEcc
Q 016446 326 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGLVHVWS 388 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La----Sgs~D~tIrlW~ 388 (389)
.. ..|..++++|||+.|+ |....++|.+||
T Consensus 405 ~~---------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 405 GI---------------------------------GSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp SS---------------------------------CEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred CC---------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 21 3688999999999877 555668898887
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=146.53 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=161.7
Q ss_pred CceeEEEecCCCeEEE-EecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 102 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~La-s~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
.|.+++|+ |+|++++ +.+.++.|.+||..++....... ...+.+++|++ |. |..+.. ++.|..||..++..
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---TTEEEEECTTCSCC
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCCceE
Confidence 67789998 8999888 66788999999976554322112 25788999994 66 444432 46899999766543
Q ss_pred EEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 178 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 178 l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
..+. ........+++. +++..+++...++.|.+||..+.........+...+..+++.|+|+++++.. ++.|.+||
T Consensus 100 -~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 100 -TVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp -EECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -eeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 3443 222456788886 5565555556789999998776665544444555789999999999999887 89999999
Q ss_pred CCCc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccc
Q 016446 256 FRGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 334 (389)
Q Consensus 256 ~~G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~ 334 (389)
.++. .......+.. ....++++|+|.++++... ++.|.+||..+.........+
T Consensus 178 ~~~~~~~~~~~~~~~-----~p~~i~~d~~g~l~v~~~~-----------~~~v~~~~~~~~~~~~~~~~~--------- 232 (270)
T 1rwi_B 178 AESNNQVVLPFTDIT-----APWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGSTTSTVLPFTG--------- 232 (270)
T ss_dssp TTTCCEEECCCSSCC-----SEEEEEECTTCCEEEEETT-----------TSCEEEECTTCSCCEECCCCS---------
T ss_pred cCCCceEeecccCCC-----CceEEEECCCCCEEEEECC-----------CCcEEEEcCCCCcceeeccCC---------
Confidence 9854 3332222222 2689999999988887643 478999997644332211111
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+..+.+++|+|||+.+++.+.+++|++++
T Consensus 233 -------------------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 -------------------------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -------------------------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -------------------------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 14789999999999999999999999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-15 Score=147.17 Aligned_cols=247 Identities=10% Similarity=-0.013 Sum_probs=183.0
Q ss_pred EEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 6 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 6 v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
..+|.+. +.+.++...+++|.+||.+|++.+.++... ...+.|+++|+|+..++ ...+ ..+.++|..
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~p~~i~~~~~g~lyv~----~~~~------~~v~~iD~~ 113 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGF--TSPRYIHFLSDEKAYVT----QIWD------YRIFIINPK 113 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECC--SSEEEEEEEETTEEEEE----EBSC------SEEEEEETT
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCC--CCCcEEEEeCCCeEEEE----ECCC------CeEEEEECC
Confidence 4677777 555566666899999999999999999643 57899999999964444 2245 678888888
Q ss_pred cCCCCCcceeEeeeccc------CceeEEEecCCCeEEEEec-CCCeEEEEeCCCCeEEEEec-CCcEEEEEEcC-CceE
Q 016446 85 RGKPDSGFALFESESLK------WPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIML 155 (389)
Q Consensus 85 ~g~~~~~~~l~~~~~~~------~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~g~~l~tl~-~~~V~~vafS~-g~~l 155 (389)
++++. ....... .|..+++. +++++++.. .+++|.++|+++++.+.++. +.....++|+| |.++
T Consensus 114 t~~~~-----~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 114 TYEIT-----GYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp TTEEE-----EEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred CCeEE-----EEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence 77752 1111222 56778884 678777765 58999999999999888876 45667899995 5544
Q ss_pred EEEecCCC--------CeeEEEEEcCCCeEEEEEeec-CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE--Ec
Q 016446 156 LIFNRSSS--------HVPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VS 224 (389)
Q Consensus 156 a~~~~~s~--------d~tiklWd~~tG~~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l 224 (389)
.++.... ...|.++|..+++.++++... ......++|+ |+++.+.+... +|.+||.++++... .+
T Consensus 187 -v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~-~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 187 -TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN-GTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp -EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC-TTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred -EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe-cCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 4433210 268999999999999888632 2367889997 67777777654 99999999998742 22
Q ss_pred ccCCCceEEEEEcC-CCcEEEEE----c-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEE
Q 016446 225 RTEFMTPSAFIFLY-ENQLFLTF----R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI 281 (389)
Q Consensus 225 ~gh~~~v~sv~fsp-dg~~laS~----s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~f 281 (389)
..+...+..++++| +|++.++. . +++|.+||.+|+++++++--..| ..++|
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P------~~~~~ 319 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIP------GAFCW 319 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESE------EEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCc------ceEEE
Confidence 33356799999999 88898988 6 89999999999999988743333 56666
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-15 Score=153.46 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=180.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
.+..|..|+|+ |+|+++++...++.|++||++++++...... .... ++|+ +|+.|+++...+ ...|.+++..++.
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~-~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG-THTVYVYMKASGW 205 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST-TCEEEEEEGGGTT
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC-CceEEEEEcCCCc
Confidence 45678899998 8999999988899999999988887655543 3334 9999 577777764332 2389999988877
Q ss_pred EEEEE----eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE----cccCCCce-E-EEEEcC-CCcEEEE
Q 016446 177 VLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMTP-S-AFIFLY-ENQLFLT 245 (389)
Q Consensus 177 ~l~tl----~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~----l~gh~~~v-~-sv~fsp-dg~~laS 245 (389)
.++.+ .........+++. |+++.|.....+++|+.||..+++.... ..++...- . .++|+| +|+++++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~-p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALD-ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEEC-TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEe-CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 66666 2234566889987 5567777776789999999998875443 33333332 4 899999 6888888
Q ss_pred Ec-CCeEEEEeCCCcEEEEeccCcC---Cc-------CCCCeeEEEECCCCCEEEEEe-cCCCcccccCCCCCeEEEEeC
Q 016446 246 FR-NRTVAVWNFRGELVTSFEDHLL---WH-------PDCNTNNIYITSDQDLIISYC-KAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 246 ~s-D~tIklWd~~G~~l~tl~gh~~---~~-------~~~~v~sv~fSpdG~~laS~s-~D~~~~~~~~s~D~tIklWd~ 313 (389)
.. ++.|+.|+.+|+ +.++.|+.. .. .......++|+|||+++++-+ . ++.|+.||+
T Consensus 285 d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------~~~I~~~~~ 352 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------GYCLRKLDI 352 (409)
T ss_dssp ETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------TCEEEEEET
T ss_pred eCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------CCEEEEEEC
Confidence 87 999999999987 455666530 00 001247999999999888754 3 489999998
Q ss_pred CCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 314 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 314 ~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.+|+ +.++.|+... .+ ...+ . .....+...+.|+++|||+++++-..++.||...
T Consensus 353 ~~G~-v~~~~g~~~~-~g---~~~g-~--------------~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 353 LDGY-VSTVAGQVDV-AS---QIDG-T--------------PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTTE-EEEEEECTTC-BS---CCCB-S--------------TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCE-EEEEeCCCCC-CC---cCCC-C--------------hhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 8887 5677676310 00 0000 0 0011135789999999999999999999998653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-16 Score=147.49 Aligned_cols=232 Identities=11% Similarity=0.122 Sum_probs=176.4
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+++|++++.++.|++||.+||+.+.++..+....+++++++|+|+.|++ .+ ..+..+|. +|+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs------~~------~~V~~~d~-~G~~---- 67 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS------YS------KGAKMITR-DGRE---- 67 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE------CB------SEEEEECT-TSCE----
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe------CC------CCEEEECC-CCCE----
Confidence 7899999999999999999999999999864347899999999998884 23 45777775 7876
Q ss_pred eeEeeecc--cCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEEEec--C------CcEEEEEEc-CCceEEEEec
Q 016446 93 ALFESESL--KWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--D------KHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 93 ~l~~~~~~--~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~tl~--~------~~V~~vafS-~g~~la~~~~ 160 (389)
+|..... ..+.++++. |||++|++.+. ++.|..+|. +|+.+.++. . ...+.+++. +|.++++.
T Consensus 68 -~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~-- 142 (276)
T 3no2_A 68 -LWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL-- 142 (276)
T ss_dssp -EEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE--
T ss_pred -EEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe--
Confidence 5653321 245678998 89999998887 777878885 899876664 1 245667888 68888764
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC------CCceEEE
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAF 234 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh------~~~v~sv 234 (389)
..++.|..||.+ |+.+.++... .....+.+. +++..++++..++.|..+|.++|+.+..+..+ ...+..+
T Consensus 143 -~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 143 -FATSEVREIAPN-GQLLNSVKLS-GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp -TTTTEEEEECTT-SCEEEEEECS-SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred -cCCCEEEEECCC-CCEEEEEECC-CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 345899999987 9999999854 455667765 56677777778889999999999998887543 2348889
Q ss_pred EEcCCCcEEEEEcCC---------eEEEEeC--CCcEEEEeccCcCC
Q 016446 235 IFLYENQLFLTFRNR---------TVAVWNF--RGELVTSFEDHLLW 270 (389)
Q Consensus 235 ~fspdg~~laS~sD~---------tIklWd~--~G~~l~tl~gh~~~ 270 (389)
+..|+|+++++.+++ ..++..+ +|+++-++..+...
T Consensus 219 ~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 219 FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred eEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 999999999988533 2345555 47777777766543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-15 Score=140.34 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=165.0
Q ss_pred cccCceeEEEecCCCeEEEE-------ecCCCeEEEEeCCCCeEEE-Ee-----cCCcEEEEEEcCC-ceEEEEecCCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLY-SI-----SDKHVQEIKISPG-IMLLIFNRSSSH 164 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las-------~s~D~tiklWdl~~g~~l~-tl-----~~~~V~~vafS~g-~~la~~~~~s~d 164 (389)
.+..|..++|+ |+|+++++ +..++.|.+||+.+++... .. ....+.++++++. +.|..+...
T Consensus 16 ~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~--- 91 (314)
T 1pjx_A 16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR--- 91 (314)
T ss_dssp CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---
T ss_pred cCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---
Confidence 44567889998 89999888 6788999999998888643 22 2357999999943 444444322
Q ss_pred eeEEEEEcCCCeEEEE-Eee----cCCceeEEEEEecCCCeEEEEeCC---------------CcEEEEECCCCeEEEEc
Q 016446 165 VPLKILSIEDGTVLKV-FYH----LLHRNKKVDFIEQFNEKLLVKQEN---------------ENLQILDVRNAELMEVS 224 (389)
Q Consensus 165 ~tiklWd~~tG~~l~t-l~~----~~~~~~~v~f~~~~~~~l~~~s~D---------------~tIklWd~~tg~~~~~l 224 (389)
..|.+||.. |+.... ... ....+..+++. +++..+++...+ +.|..+|.. |+.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 368999988 886543 221 11346788886 556555555444 567777776 7665443
Q ss_pred ccCCCceEEEEEc----CCCcE-EEEEc-CCeEEEEeCC--Cc-----EEEEeccCc-CCcCCCCeeEEEECCCCCEEEE
Q 016446 225 RTEFMTPSAFIFL----YENQL-FLTFR-NRTVAVWNFR--GE-----LVTSFEDHL-LWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 225 ~gh~~~v~sv~fs----pdg~~-laS~s-D~tIklWd~~--G~-----~l~tl~gh~-~~~~~~~v~sv~fSpdG~~laS 290 (389)
.+...+..++|+ |||+. +++.. ++.|.+||.+ |+ .+..+.++. .. ...++++|||+++++
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-----ADGMDFDEDNNLLVA 242 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-----EEEEEEBTTCCEEEE
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC-----CCceEECCCCCEEEE
Confidence 344567899999 99965 45556 8999999974 54 344455443 22 578999999999998
Q ss_pred EecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 370 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp 370 (389)
...+ +.|.+||..+|+.+..+..+. ..+.+++|+|
T Consensus 243 ~~~~-----------~~i~~~d~~~g~~~~~~~~~~----------------------------------~~~~~i~~~~ 277 (314)
T 1pjx_A 243 NWGS-----------SHIEVFGPDGGQPKMRIRCPF----------------------------------EKPSNLHFKP 277 (314)
T ss_dssp EETT-----------TEEEEECTTCBSCSEEEECSS----------------------------------SCEEEEEECT
T ss_pred EcCC-----------CEEEEEcCCCCcEeEEEeCCC----------------------------------CCceeEEECC
Confidence 6543 799999988899888887664 4799999999
Q ss_pred CCCEE-EEecCCCcEEEcc
Q 016446 371 ERNEI-YTGNRHGLVHVWS 388 (389)
Q Consensus 371 dg~~L-aSgs~D~tIrlW~ 388 (389)
||+.| ++...++.|..++
T Consensus 278 dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEe
Confidence 99955 5556677787765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-14 Score=129.58 Aligned_cols=272 Identities=8% Similarity=0.033 Sum_probs=186.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+.+..|.+. |.+.++...++.|..|+.. |+............+.+|++.|+|..+++. ..+ ..+..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~------~~i~~~ 83 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTE----NAA------NKIGRI 83 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEE----TTT------TEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeC----CCC------CeEEEE
Confidence 467888887 6666666568999999997 765443222233689999999999977662 223 345555
Q ss_pred EeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-Eec--CCcEEEEEEcC-CceEE
Q 016446 82 YIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKISP-GIMLL 156 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~--~~~V~~vafS~-g~~la 156 (389)
+. .|+. ..+. ......|..++|+ |+|+++++...++.|..||. +++... .+. ...+.++++.+ |...
T Consensus 84 ~~-~g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~- 155 (299)
T 2z2n_A 84 TK-KGII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALW- 155 (299)
T ss_dssp CT-TSCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEE-
T ss_pred CC-CCcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEE-
Confidence 53 3442 1222 1133467789998 89999998888899999998 776543 333 35789999994 5554
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAF 234 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv 234 (389)
.+. ..++.|..||. +|+.... +..+......+++. +++..+++...++.|.+||. +++.... +..+...+..+
T Consensus 156 v~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 156 FTE--NQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp EEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEe--CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeE
Confidence 443 22368999998 8887653 33334456778876 55555555557899999999 8876543 44566789999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
++.|+|+++++.. ++.|..||.+|+.... +.++... +.++++ ++|++.++.+. +.|..+|
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-----~~~i~~-~~g~l~v~~~~------------~~l~~~~ 292 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE-----PHGICF-DGETIWFAMEC------------DKIGKLT 292 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCC-----EEEEEE-CSSCEEEEETT------------TEEEEEE
T ss_pred EECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCc-----cceEEe-cCCCEEEEecC------------CcEEEEE
Confidence 9999999999886 8999999998764322 3333322 689999 99999998642 4566667
Q ss_pred CCCCe
Q 016446 313 ILTGK 317 (389)
Q Consensus 313 ~~tg~ 317 (389)
..+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 66554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-16 Score=151.92 Aligned_cols=272 Identities=10% Similarity=0.061 Sum_probs=177.4
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE---eeecccCceeEEEecCCC
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF---ESESLKWPGFVEFDDVNG 113 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~---~~~~~~~~~~v~Fs~pdG 113 (389)
..+.... .....|+++|+|+.+++..... .+ . ++||.+..|++... +-+ ...++.+|..|+|+ |+|
T Consensus 10 ~~v~~~~-~~p~~va~~~~g~~~v~~~~~~-~~------~-~~l~~~~~g~~~~~-p~~~~~~~~~~~~p~gv~~d-~~g 78 (343)
T 2qe8_A 10 EVVAELS-LAPGNITLTPDGRLFLSLHQFY-QP------E-MQVAELTQDGLIPF-PPQSGNAIITFDTVLGIKSD-GNG 78 (343)
T ss_dssp EEEEEES-SCEEEEEECTTSCEEEEECGGG-CC------S-CSEEEEETTEEEES-CCCCSSCCCCCSCEEEEEEC-SSS
T ss_pred EEEEEcC-CCcceEEECCCCCEEEEeCCCC-CC------c-eEEEEECCCCeecC-CCcccCcccceeEeeEEEEc-CCC
Confidence 3344333 5789999999999877743221 12 1 45565555543100 000 11356678899998 899
Q ss_pred eEEEEecC-----CCeEEEEeCCCCeEEEEec--C------CcEEEEEEc-CCceEEEEecC-CCCeeEEEEEcCCCeEE
Q 016446 114 KVLTYSAQ-----DSIYKVFDLKNYTMLYSIS--D------KHVQEIKIS-PGIMLLIFNRS-SSHVPLKILSIEDGTVL 178 (389)
Q Consensus 114 ~~Las~s~-----D~tiklWdl~~g~~l~tl~--~------~~V~~vafS-~g~~la~~~~~-s~d~tiklWd~~tG~~l 178 (389)
++++.... +..|.+||+++|+.+.++. . ..+.+|+|+ +++.+..+... +.++.|.+||+.+|+..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 98886544 6899999999999776653 1 356899999 45666555321 14679999999999988
Q ss_pred EEEeecCCcee-EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 179 KVFYHLLHRNK-KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 179 ~tl~~~~~~~~-~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
+.+.+|..... .+.|. +++..+...+.|++++.|.. .+..++|+|||+.|..+. ++. +||.+
T Consensus 159 r~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~-~l~~~ 222 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLV-IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHST-SMYRI 222 (343)
T ss_dssp EECTTCTTTSCCSCCCE-ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCS-EEEEE
T ss_pred EEecCCCccccccccee-ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCC-eEEEE
Confidence 88765422211 13444 34555555678888877742 467899999999887776 554 56654
Q ss_pred C------Cc-----EEE--EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 257 R------GE-----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 257 ~------G~-----~l~--tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ +. ... ...++... ...++++|||.++++... ++.|.+||..+|+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~-----pdgia~d~~G~l~va~~~-----------~~~V~~~d~~~G~~~~~~~ 286 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPI-----CDGISIDKDHNIYVGDLA-----------HSAIGVITSADRAYKLLVT 286 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCS-----CSCEEECTTCCEEEEEGG-----------GTEEEEEETTTTEEEEEEE
T ss_pred EHHHhcCCCCChhhhhcceEecccCCC-----CceEEECCCCCEEEEccC-----------CCeEEEEECCCCCEEEEEE
Confidence 3 11 110 12233322 368999999999998765 3899999975787533332
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
... +..+.+|+|+|||+++++.+..+.+
T Consensus 287 ~~~---------------------------------~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 287 DEK---------------------------------LSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CGG---------------------------------GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CCc---------------------------------eecCCeeEECCCCcEEEEeCccccc
Confidence 111 1579999999999999998865443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-15 Score=135.53 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=166.6
Q ss_pred ceeeeeeecCCcc-eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC
Q 016446 33 NRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 33 g~~l~tl~~~~~~-~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
++.+..+.+-..+ ...+|+++|+|+.++++ ...+ ..+..++...+.. ..+.......|..++|+ |
T Consensus 11 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~---~~~~------~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~-~ 76 (270)
T 1rwi_B 11 GQTVLPFTGIDFRLSPSGVAVDSAGNVYVTS---EGMY------GRVVKLATGSTGT----TVLPFNGLYQPQGLAVD-G 76 (270)
T ss_dssp -CEECCCCSCSSCCCEEEEEECTTCCEEEEE---CSSS------CEEEEECC---------EECCCCSCCSCCCEEEC-T
T ss_pred CcccCccccccccCCccceEECCCCCEEEEc---cCCC------CcEEEecCCCccc----ceEeeCCcCCcceeEEC-C
Confidence 4444444432222 77899999999966622 2344 4565666433332 11112233467789998 8
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
+|+++++.. ++.|.+||..+... ..+. + ..+.++++++ |... .+. ..++.|.+|+..++............
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~-v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 151 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVY-VAD--RGNNRVVKLAAGSKTQTVLPFTGLND 151 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEE-EEE--GGGTEEEEECTTCCSCEECCCCSCCS
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEE-EEE--CCCCEEEEEECCCceeEeeccccCCC
Confidence 999888777 89999999865543 3332 2 5799999994 6544 443 22468999986665544332223345
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEec-
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE- 265 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~- 265 (389)
...+++. +++..+++...++.|.+||..++........+...+..+++.|+|+++++.. ++.|.+||.++.....+.
T Consensus 152 p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~ 230 (270)
T 1rwi_B 152 PDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF 230 (270)
T ss_dssp CCCEEEC-TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC
T ss_pred ceeEEEe-CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc
Confidence 6788887 5566555556789999999988877665555557899999999999999887 899999999865443332
Q ss_pred cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 266 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
.+.. .+.+++|+|||+++++.+. +++|+++++...+
T Consensus 231 ~~~~-----~p~~i~~~~~g~l~v~~~~-----------~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLN-----TPLAVAVDSDRTVYVADRG-----------NDRVVKLTSLEHH 266 (270)
T ss_dssp CSCS-----CEEEEEECTTCCEEEEEGG-----------GTEEEEECCCGGG
T ss_pred CCCC-----CceeEEECCCCCEEEEECC-----------CCEEEEEcCCCcc
Confidence 2222 2689999999998888665 4899999987554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-14 Score=148.61 Aligned_cols=258 Identities=12% Similarity=0.047 Sum_probs=182.3
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC--CCeEEEEec-CCcEEEEEEc--
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS-DKHVQEIKIS-- 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~--~g~~l~tl~-~~~V~~vafS-- 150 (389)
..+.++|..++++ +.....-..+..++|| |||++|..++.|++|.+||+. +++.+.++. +..-..++||
T Consensus 177 ~~V~viD~~t~~v-----~~~i~~g~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 177 GQIALIDGSTYEI-----KTVLDTGYAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 250 (567)
T ss_dssp TEEEEEETTTCCE-----EEEEECSSCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CeEEEEECCCCeE-----EEEEeCCCCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccc
Confidence 7888999888886 2221222235579998 999999999999999999996 888888886 5677899999
Q ss_pred ---CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-----------CCceeEEEEEecCCCeEE-EEeCCCcEEEEEC
Q 016446 151 ---PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDFIEQFNEKLL-VKQENENLQILDV 215 (389)
Q Consensus 151 ---~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-----------~~~~~~v~f~~~~~~~l~-~~s~D~tIklWd~ 215 (389)
+|+++++++.. +++|.++|..|++.++++.-. ..++..+.++ +++..++ +-.++++|.++|.
T Consensus 251 ~~pDGk~l~v~n~~--~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s-~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 251 EGWEDKYAIAGAYW--PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TTCTTTEEEEEEEE--TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEET
T ss_pred cCCCCCEEEEEEcc--CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-CCCCEEEEEecCCCeEEEEec
Confidence 58888887544 479999999999999988621 1145667776 4444444 4468899999999
Q ss_pred CCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEecc-CcCCcCCCCeeEEEECCCCC-EEE
Q 016446 216 RNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQD-LII 289 (389)
Q Consensus 216 ~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~-~la 289 (389)
.+.+.+.+ -.........+.|+|||++|..+. +++|.++|.. ++++.++.- -..+++...++ .|+|++. ..+
T Consensus 328 ~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~ 405 (567)
T 1qks_A 328 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWA 405 (567)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTEEEEE
T ss_pred CCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCCcEEE
Confidence 87643222 123344677899999999987664 8999999996 998887764 33344321122 3689854 445
Q ss_pred EEecCCCcccccCCCCCeEEEEeCCC-------CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 362 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~t-------g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
++.. .+++|-++|..+ -+.++++.+... .
T Consensus 406 t~~~----------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~----------------------------------g 441 (567)
T 1qks_A 406 TSHM----------GDDSVALIGTDPEGHPDNAWKILDSFPALGG----------------------------------G 441 (567)
T ss_dssp EEBS----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCS----------------------------------C
T ss_pred eCCC----------CCCeEEEecCCCCCCccccCEEEEEEecCCC----------------------------------C
Confidence 5422 247999999887 457777765421 1
Q ss_pred EEEEEECCCCCEEEEecC-------CCcEEEcc
Q 016446 363 ITSLFYDEERNEIYTGNR-------HGLVHVWS 388 (389)
Q Consensus 363 V~svafSpdg~~LaSgs~-------D~tIrlW~ 388 (389)
=.-+.++|||+.|+.... .++|.+.|
T Consensus 442 ~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 442 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 122678999999888663 35777765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-13 Score=135.21 Aligned_cols=277 Identities=6% Similarity=-0.081 Sum_probs=183.0
Q ss_pred ccEEEEEec--Cc---eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEe------ecCCCcceeeeeeeEe
Q 016446 13 RDIVFALAH--SG---VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~--~g---tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~------~~~d~~~l~~~~~~l~ 81 (389)
+..+.+... .. +|.++|..+++.+.++.... .. .++|||||+.|..+..+ +..+ ..+.++
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~------~~v~vi 102 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRT------DYVEVF 102 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCC------CeEEEE
Confidence 555555543 22 89999999999999988753 44 99999999999886532 1123 467778
Q ss_pred EeccCCCCCcceeE--e-eecccCceeEEEecCCCeEEEEecC--CCeEEEEeCCCCeEEEE-ecCCcEEEEEEc-CCce
Q 016446 82 YIRRGKPDSGFALF--E-SESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKIS-PGIM 154 (389)
Q Consensus 82 ~i~~g~~~~~~~l~--~-~~~~~~~~~v~Fs~pdG~~Las~s~--D~tiklWdl~~g~~l~t-l~~~~V~~vafS-~g~~ 154 (389)
|..+++......+- . ......|..++|| |||++|..+.. +.+|-++| ++++.+.+ +.-.. ++.+. ++..
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~~~~~~~~~~ 178 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--CYHIHPGAPS 178 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--eEEEEeCCCc
Confidence 87776652211110 0 0012357789998 99999887764 58899999 99999888 75321 13444 3433
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEe------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEEccc
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSRT 226 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~~l~g 226 (389)
...+ ...|+++..+|. +|+...... +.........|. ++++.++..+.++++.+.|+.++.. +..+.-
T Consensus 179 ~~~~--~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 179 TFYL--LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred eEEE--EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE-ecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence 3232 234678999999 888874432 110111233455 4556666656788999999976532 222211
Q ss_pred ----------CCCceEEEEEcCCCcEEEEEc-----------CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCC
Q 016446 227 ----------EFMTPSAFIFLYENQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 284 (389)
Q Consensus 227 ----------h~~~v~sv~fspdg~~laS~s-----------D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpd 284 (389)
.......++|+|||+.|-.+. .++|-+.|.. ++.++++..-.. .+.++||||
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~------p~~i~~s~D 328 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD------VDAISVAQD 328 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC------cCeEEECCC
Confidence 112244478999988665543 2479999997 899888864332 379999999
Q ss_pred CC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 285 QD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 285 G~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
|+ +|.++... +++|.++|+.+++.++++
T Consensus 329 g~~~l~v~~~~----------~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 329 GGPDLYALSAG----------TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEEcCC----------CCeEEEEECCCCCEEeee
Confidence 99 77776532 489999999999999885
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-14 Score=131.94 Aligned_cols=221 Identities=11% Similarity=0.121 Sum_probs=156.6
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
.....|++.++.++.+...+++|..||..+++....-....+.+++|+ +|.++ ++. +..|.+||.++|+.....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~-v~~----~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYV-ATI----GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEE-EEE----TTEEEEEETTTTEEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEE-EEE----CCeEEEEECCCCcEEEEE
Confidence 357899844678888888999999999988875322235789999999 56644 443 247999999998865433
Q ss_pred eec----CCceeEEEEEecCCCeEEEEeC---------CCcEEEEECCC-CeEEEEcccCCCceEEEEEcCCCcEE-EEE
Q 016446 182 YHL----LHRNKKVDFIEQFNEKLLVKQE---------NENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLF-LTF 246 (389)
Q Consensus 182 ~~~----~~~~~~v~f~~~~~~~l~~~s~---------D~tIklWd~~t-g~~~~~l~gh~~~v~sv~fspdg~~l-aS~ 246 (389)
... ....+.+++. +++..+++... ....+||.+.. |+... +..+....+.++|+|||+.| ++.
T Consensus 90 ~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp ECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEE
T ss_pred ecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEec
Confidence 321 1235778886 55654444322 24567776653 44433 34455678899999999865 555
Q ss_pred c-CCeEEEEeC--C-CcE-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe
Q 016446 247 R-NRTVAVWNF--R-GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 317 (389)
Q Consensus 247 s-D~tIklWd~--~-G~~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~ 317 (389)
+ ++.|..|++ . |++ +..+..+... ...++++|||++.++.... +.|..||..+|+
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~~G~lwva~~~~-----------~~v~~~d~~tG~ 231 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-----PDGMCIDAEGKLWVACYNG-----------GRVIRLDPVTGK 231 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-----EEEEEEBTTSCEEEEEETT-----------TEEEEECTTTCC
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-----CCeeEECCCCCEEEEEcCC-----------CEEEEEcCCCce
Confidence 6 899999986 3 654 2333333222 5789999999988886543 789999998999
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC-CCCCEEEEecC
Q 016446 318 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 380 (389)
Q Consensus 318 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS-pdg~~LaSgs~ 380 (389)
++.++..+. ..+++++|+ ||+++|+-++.
T Consensus 232 ~~~~i~~p~----------------------------------~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKLPV----------------------------------DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECSS----------------------------------SBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEECCC----------------------------------CCceEEEEeCCCCCEEEEEcC
Confidence 999998775 479999999 99998876654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-14 Score=151.06 Aligned_cols=254 Identities=12% Similarity=0.072 Sum_probs=176.6
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
...+.+++|||||+.||.++..++.+ -.+++++|+.+|+.... .+. .. -..+++|+ ||+.|+.++.|.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~-----~~~i~v~dl~tg~~~~~--~~~-~~--k~~~~~Ws--Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSD-----WREIHLMDVESKQPLET--PLK-DV--KFSGISWL--GNEGFFYSSYDK 195 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCC-----EEEEEEEETTTCSEEEE--EEE-EE--ESCCCEEE--TTTEEEEEESSC
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCc-----eEEEEEEECCCCCCCcc--ccC-Cc--eeccEEEe--CCCEEEEEEecC
Confidence 35789999999999999766554443 16889999999985111 111 11 01358996 899999998885
Q ss_pred e-------------EEEEeCCCCe----EEEEecC---CcEEEEEEc-CCceEEEEecCC-CCeeEEEEEcCCCe-EEEE
Q 016446 124 I-------------YKVFDLKNYT----MLYSISD---KHVQEIKIS-PGIMLLIFNRSS-SHVPLKILSIEDGT-VLKV 180 (389)
Q Consensus 124 t-------------iklWdl~~g~----~l~tl~~---~~V~~vafS-~g~~la~~~~~s-~d~tiklWd~~tG~-~l~t 180 (389)
+ |++|++.+++ +++.... ..+.++++| +|++|+.+...+ ....|.+||+.+++ .++.
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 4 9999998765 3444433 257899999 688886655433 34589999998874 5667
Q ss_pred EeecCCceeEEEEEecCCCeEEEEe-C---CCcEEEEECCCCeE--EEEcccCCCceEEEEEcCCCcEEEEEc--CC--e
Q 016446 181 FYHLLHRNKKVDFIEQFNEKLLVKQ-E---NENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 250 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~~l~~~s-~---D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fspdg~~laS~s--D~--t 250 (389)
+..+....... +. ++++.++..+ . ...|..+|+.++++ .+.+..|...+. .|+|+|+.|+... |+ .
T Consensus 276 l~~~~~~~~~~-~~-~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VD-NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 77655555554 44 5677777654 3 36899999998876 455666766665 8999999888775 55 7
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|++||++|...+.+.-... ..+..+.++||++.|+....+ ...-++|..||+.+|+. ..|...
T Consensus 352 l~~~d~~g~~~~~l~~p~~----~~~~~~~~~~d~~~l~~~~ss-------~~tP~~l~~~d~~~g~~-~~l~~~ 414 (693)
T 3iuj_A 352 VEQFDYEGKRVREVALPGL----GSVSGFNGKHDDPALYFGFEN-------YAQPPTLYRFEPKSGAI-SLYRAS 414 (693)
T ss_dssp EEEECTTSCEEEEECCSSS----SEEEECCCCTTCSCEEEEEEC-------SSSCCEEEEECTTTCCE-EEEECC
T ss_pred EEEEECCCCeeEEeecCCC----ceEEeeecCCCCCEEEEEecC-------CCCCCEEEEEECCCCeE-EEEEeC
Confidence 8999998776666652211 126788889999877765432 12347999999988874 455543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-12 Score=120.18 Aligned_cols=261 Identities=10% Similarity=0.054 Sum_probs=181.8
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCC
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
...++|++.|+|+..++ ...+ ..+..++.. |++. .+. ......|..++++ ++|++.++...++
T Consensus 20 ~~p~~i~~d~~g~l~v~----~~~~------~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFT----QHKA------NKISSLDQS-GRIK----EFEVPTPDAKVMCLIVS-SLGDIWFTENGAN 83 (300)
T ss_dssp CCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-SCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETTTT
T ss_pred CCcceeeECCCCCEEEE----cCCC------CeEEEECCC-CceE----EEECCCCCCcceeEEEC-CCCCEEEEecCCC
Confidence 57899999999997766 2233 455566644 5531 121 1223567889998 8999998887789
Q ss_pred eEEEEeCCCCeEE-EEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCC
Q 016446 124 IYKVFDLKNYTML-YSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFN 198 (389)
Q Consensus 124 tiklWdl~~g~~l-~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~ 198 (389)
.|..+|.. ++.. ..+. ...+.++++.+ |.+.+ +.. .++.|..+|.. |+.... +.........+++. +++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g 157 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWF-TQL--NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN 157 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEE-EET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEE-Ecc--CCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence 99999987 7653 3333 35799999995 55554 432 23689999987 776632 23234556778876 555
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEE-eccCcCCcCCCC
Q 016446 199 EKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 275 (389)
Q Consensus 199 ~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~t-l~gh~~~~~~~~ 275 (389)
...++...++.|..+|. +|+.... +..+...+..+++.|+|++.++.. .+.|..+|.+|+.... +..+.. .
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-----~ 231 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA-----R 231 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-----C
T ss_pred CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-----C
Confidence 54444556889999999 7776553 335566899999999999999887 7899999998776543 332222 2
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCCcccccCCCCCCCccccccccceec
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 354 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+.+++++|+|++.++... ++.|..+|. +|+.... +..+.
T Consensus 232 ~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---------------------------- 271 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWG-----------ANQIGRITN-DNTIQEYQLQTEN---------------------------- 271 (300)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEECT-TSCEEEEECCSTT----------------------------
T ss_pred ceEEEECCCCCEEEeccC-----------CCeEEEECC-CCcEEEEECCccC----------------------------
Confidence 689999999998887533 379999997 5765422 22111
Q ss_pred ccccccCCEEEEEECCCCCEEEEec
Q 016446 355 TVGEALEDITSLFYDEERNEIYTGN 379 (389)
Q Consensus 355 ~~~~~~~~V~svafSpdg~~LaSgs 379 (389)
..+.+++++|+|+++++..
T Consensus 272 ------~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 272 ------AEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ------CCCCCEEECTTSCEEEECS
T ss_pred ------CccceeEeCCCCCEEEEcc
Confidence 3678899999999888776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-13 Score=131.35 Aligned_cols=283 Identities=8% Similarity=0.034 Sum_probs=182.5
Q ss_pred EEEeeCCCEEEEEEEee-cCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec--------
Q 016446 50 LFYNKNNDSLITVSVYA-SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-------- 120 (389)
Q Consensus 50 v~~spdg~~l~s~s~~~-~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-------- 120 (389)
+...|+++.+..+. . +.+ .+. .+.++|..++++. -+...-..+ .++|| |||+.|..+.
T Consensus 26 ~~~~~~~~~~yv~~--~~~~~--~~~--~v~v~D~~t~~~~-----~~i~~g~~p-~i~~s-pDg~~lyv~n~~~~~~~r 92 (373)
T 2mad_H 26 EAPGADGRRSYINL--PAHHS--AII--QQWVLDAGSGSIL-----GHVNGGFLP-NPVAA-HSGSEFALASTSFSRIAK 92 (373)
T ss_pred ccCCCCCCEEEEeC--CcccC--Ccc--EEEEEECCCCeEE-----EEecCCCCC-CeEEC-CCCCEEEEEecccccccc
Confidence 34568887655532 2 222 221 7788888888762 111111224 79998 9999888775
Q ss_pred --CCCeEEEEeCCCCeEEEEec-C--------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE-EeecCCc
Q 016446 121 --QDSIYKVFDLKNYTMLYSIS-D--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHR 187 (389)
Q Consensus 121 --~D~tiklWdl~~g~~l~tl~-~--------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t-l~~~~~~ 187 (389)
.+++|.++|+.+++.+.++. . ..-..++|| +|++|++++.. .+.+|.++| ++|+.+.+ +... +
T Consensus 93 g~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~~~~~~~i~~~-~- 168 (373)
T 2mad_H 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGGSSDDQLLSSP-T- 168 (373)
T ss_pred CCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCCeEEEEE-CCCCEEeEEcCCC-c-
Confidence 37899999999998887764 2 234589999 68888877532 136899999 99999988 6521 1
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C-
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G- 258 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G- 258 (389)
.+.+.+..+..+++.+.|+++..+|. +|+...... +.........|.+++..++-.+ .+++-+.|+. +
T Consensus 169 --~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 169 --CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred --eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 24454333345556679999999999 888764321 1111122345677665544444 7889899986 3
Q ss_pred -cEEEEeccC------cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc
Q 016446 259 -ELVTSFEDH------LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 331 (389)
Q Consensus 259 -~~l~tl~gh------~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~ 331 (389)
+.+.+++-. ..+.+.. ...++|+|||+.|..+.....+.. -....++|-+.|+.+++.++++..-
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~-~~~~~~~V~VID~~t~~vv~~i~~g------ 317 (373)
T 2mad_H 246 ATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLG------ 317 (373)
T ss_pred ceEeeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCccc-ccCCCCeEEEEECCCCEEEEEEECC------
Confidence 233343211 1111111 345899999998777543100000 0001368999999999999999542
Q ss_pred ccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEec-CCCcEEEccC
Q 016446 332 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~~ 389 (389)
...++++|||||+ .|+++. .+++|.++|.
T Consensus 318 -----------------------------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 318 -----------------------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred -----------------------------CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 2578899999999 899988 5999999873
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=155.34 Aligned_cols=233 Identities=9% Similarity=0.083 Sum_probs=161.8
Q ss_pred ceeEEEecCCCeEEE-----EecCCCeEEEEeCCCCeEEEE-ecCCcEEEEEEcCCceEEEEecCC----------CCee
Q 016446 103 PGFVEFDDVNGKVLT-----YSAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPGIMLLIFNRSS----------SHVP 166 (389)
Q Consensus 103 ~~~v~Fs~pdG~~La-----s~s~D~tiklWdl~~g~~l~t-l~~~~V~~vafS~g~~la~~~~~s----------~d~t 166 (389)
+..++|| |||++|| +|+.+.+|++||+++|+.+.. +......+++||||+.|+.++.+. ....
T Consensus 131 l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 131 LDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCE
T ss_pred EEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcE
Confidence 4568998 9999999 455567999999999996542 322223577888888888876552 2246
Q ss_pred EEEEEcCCCe----EEEEEee-cCCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCe-EEEEcccCCCceEEEEE
Q 016446 167 LKILSIEDGT----VLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE-LMEVSRTEFMTPSAFIF 236 (389)
Q Consensus 167 iklWd~~tG~----~l~tl~~-~~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~-~~~~l~gh~~~v~sv~f 236 (389)
|++|++.+++ ++...+. |.....++.++ |++.+|+... .+..|.+||+.+++ ..+.+..+.........
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~ 288 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVD 288 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEe
Confidence 9999998876 3433333 33346788887 7888887643 33689999998874 45666777777777744
Q ss_pred cCCCcEEEEEc-C---CeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC--e
Q 016446 237 LYENQLFLTFR-N---RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--S 307 (389)
Q Consensus 237 spdg~~laS~s-D---~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~--t 307 (389)
++++++++... | +.|..+|++ +++ .++|..|... +. .|+|+|++|+..+.+ ++ .
T Consensus 289 ~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~~----------~g~~~ 351 (693)
T 3iuj_A 289 NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYMV----------DATAR 351 (693)
T ss_dssp EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEEE----------TTEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEEE----------CCeeE
Confidence 55566666665 4 578899997 554 4677777654 33 899999999987764 23 7
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC----Cc
Q 016446 308 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GL 383 (389)
Q Consensus 308 IklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D----~t 383 (389)
|++||+. |+....+.-... ..|..++++||++.|+-...+ ++
T Consensus 352 l~~~d~~-g~~~~~l~~p~~---------------------------------~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 352 VEQFDYE-GKRVREVALPGL---------------------------------GSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp EEEECTT-SCEEEEECCSSS---------------------------------SEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred EEEEECC-CCeeEEeecCCC---------------------------------ceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 9999987 555555542210 257778888999877766544 67
Q ss_pred EEEcc
Q 016446 384 VHVWS 388 (389)
Q Consensus 384 IrlW~ 388 (389)
|..||
T Consensus 398 l~~~d 402 (693)
T 3iuj_A 398 LYRFE 402 (693)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-13 Score=135.52 Aligned_cols=287 Identities=12% Similarity=0.098 Sum_probs=186.0
Q ss_pred ccEEEEEec-----CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 13 RDIVFALAH-----SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 13 ~~~~a~~~~-----~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
+..+.+... +++|.+.|..|++.+.++.... .. . +++||||++|..++.+.+.....=.-..+.++|..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 555666554 6899999999999999999765 55 4 99999999987766432110000001578899988887
Q ss_pred CCCcceeEe---eecccCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecC
Q 016446 88 PDSGFALFE---SESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 88 ~~~~~~l~~---~~~~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~ 161 (389)
......+-. .....+|..++|+ |||++|..+. .+++|.++|+++++.+.++.-... ...+. ....+++.+.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~~- 197 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCR- 197 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET-
T ss_pred EEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEECC-
Confidence 622111100 0011257789998 9999776654 378999999999999988863222 22233 2333433322
Q ss_pred CCCeeEEEEEcCC-CeEEEEEeecC----Cce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEEcc--------
Q 016446 162 SSHVPLKILSIED-GTVLKVFYHLL----HRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR-------- 225 (389)
Q Consensus 162 s~d~tiklWd~~t-G~~l~tl~~~~----~~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~--~~~l~-------- 225 (389)
|+++-..++.+ |+...+...+. .++ ...+|..+ +++++..+.+++|.+.|+.++.. ++.+.
T Consensus 198 --DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~-dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 198 --DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp --TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred --CCCEEEEECCCCCeEEEeecceeccccccccccceeEcC-CCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence 45666677765 66644332121 111 22466533 45777777899999999976642 22211
Q ss_pred -c-CCCceEEEEEcCCCcEEEEEc-C----------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEE
Q 016446 226 -T-EFMTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIIS 290 (389)
Q Consensus 226 -g-h~~~v~sv~fspdg~~laS~s-D----------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS 290 (389)
+ .......++++|++++|--.. + ++|-+-|+. ++.++++.--.. +++++|||||+ +|.+
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~------~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE------IDSINVSQDEKPLLYA 348 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECSSSSCEEEE
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC------cceEEECCCCCeEEEE
Confidence 0 111233478899888776653 1 468888986 999888763221 58999999998 7766
Q ss_pred EecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
... .+++|-+.|..+++.++++..
T Consensus 349 tn~----------~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 349 LST----------GDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EET----------TTTEEEEEETTTCCEEEEECC
T ss_pred EcC----------CCCeEEEEECCCCcEEEEecC
Confidence 543 258999999999999999854
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-12 Score=115.64 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=165.4
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-Eec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCe
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
..|.+++++ ++|++.++...++.|.+||.. ++... .+. ...+.++++.+ |... .+. ..++.|..+|.. |+
T Consensus 20 ~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~--~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 20 SGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIW-FTE--NGANKIGKLSKK-GG 93 (300)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEE-EEE--TTTTEEEEECTT-SC
T ss_pred CCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEE-EEe--cCCCeEEEECCC-CC
Confidence 356789998 899999988889999999987 76443 333 25799999995 5544 443 223689999987 77
Q ss_pred EEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 177 VLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 177 ~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
.. .+. ........+++. +++..+++...++.|..+|.. |+.... +......+..+++.|+|++.++.. ++.|.
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp EE-EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred eE-EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 64 333 233556788876 455555555568899999997 776543 444566899999999999988887 88999
Q ss_pred EEeCCCcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE-ecCCCCCCC
Q 016446 253 VWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPK 330 (389)
Q Consensus 253 lWd~~G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t-l~gH~~~~~ 330 (389)
.+|.+|+.... +..+.. .+..++++|+|++.++... .+.|..+|. +|+.... +..+.
T Consensus 171 ~~~~~g~~~~~~~~~~~~-----~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---- 229 (300)
T 2qc5_A 171 RITNTGKLEEYPLPTNAA-----APVGITSGNDGALWFVEIM-----------GNKIGRITT-TGEISEYDIPTPN---- 229 (300)
T ss_dssp EECTTCCEEEEECSSTTC-----CEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT----
T ss_pred EECCCCcEEEeeCCCCCC-----CcceEEECCCCCEEEEccC-----------CCEEEEEcC-CCcEEEEECCCCC----
Confidence 99998776542 222222 2689999999998887543 368999997 6775543 22221
Q ss_pred cccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 331 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..+.+++++|+|+..++...++.|..++
T Consensus 230 ------------------------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 230 ------------------------------ARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ------------------------------CCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred ------------------------------CCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 4788999999999888887788888775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-12 Score=123.10 Aligned_cols=219 Identities=8% Similarity=0.001 Sum_probs=149.9
Q ss_pred ceeEEEecCC-CeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEE
Q 016446 103 PGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 103 ~~~v~Fs~pd-G~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~t 180 (389)
+...+|+ |+ +.++.+...++.|..||.++++....-....|.+++++ +|.+++++ . ..|.+||..+|+....
T Consensus 51 ~egp~~~-~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~----~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFD-PASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D----DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEE-TTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T----TEEEEEETTTCCEEEE
T ss_pred CcCCeEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C----CCEEEEECCCCcEEEE
Confidence 3568998 65 67778888899999999988875422235689999999 56666543 2 2499999999886543
Q ss_pred Eeec----CCceeEEEEEecCCCeEEEEeC----CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE-EEEc-CCe
Q 016446 181 FYHL----LHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRT 250 (389)
Q Consensus 181 l~~~----~~~~~~v~f~~~~~~~l~~~s~----D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l-aS~s-D~t 250 (389)
.... ...+..+++. +++..+++... ..+.+||.+.+|+.... ..+...+..++|+|||+.| ++.+ ++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVAKGKVTKL-FADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEETTEEEEE-EEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEeCCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 2210 1246778886 55654444332 13455555546665443 3344567899999999865 4445 889
Q ss_pred EEEEeCC---C-c-----EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 251 VAVWNFR---G-E-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 251 IklWd~~---G-~-----~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
|.+||++ | + .+..+.++... ...+++++||++.++... ++.|..||. +|+.+..
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~-----p~gi~~d~~G~lwva~~~-----------~~~v~~~d~-~g~~~~~ 265 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYDT-DGNHIAR 265 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEECT-TCCEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCC-----CCeeEECCCCCEEEEEeC-----------CCEEEEECC-CCCEEEE
Confidence 9999973 6 3 23334332222 578999999998887643 378999997 7888888
Q ss_pred ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC-CCCCEEEEecC
Q 016446 322 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 380 (389)
Q Consensus 322 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS-pdg~~LaSgs~ 380 (389)
+..+. ..+++++|+ ||++.|+.++.
T Consensus 266 i~~~~----------------------------------~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 266 YEVPG----------------------------------KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECSC----------------------------------SBEEEEEEESTTSCEEEEEEB
T ss_pred EECCC----------------------------------CCcEEEEEecCCCCEEEEEec
Confidence 87665 479999999 99987755543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-13 Score=123.87 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=158.4
Q ss_pred EEEEEee--ccEEEE-------EecCceEEEEecccceeeeeeec----CCcceEEEEEEeeC-CCEEEEEEEeecCCCc
Q 016446 6 VIEIVAA--RDIVFA-------LAHSGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKN-NDSLITVSVYASDNFS 71 (389)
Q Consensus 6 v~~i~~~--~~~~a~-------~~~~gtiklW~~~tg~~l~tl~~----~~~~~v~sv~~spd-g~~l~s~s~~~~~d~~ 71 (389)
...+.+. +.+.++ ...++.|..|+..+|+... +.. .+...+.+++++|+ |+.+++. .+
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-----~~-- 91 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVAD-----MR-- 91 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEE-----TT--
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEE-----CC--
Confidence 4567776 666666 5788999999987787653 332 12357899999999 7755552 22
Q ss_pred ceeeeeeeEeEeccCCCCCccee-Ee---eecccCceeEEEecCCCeEEEEecCC---------------CeEEEEeCCC
Q 016446 72 SLKCRSTKIEYIRRGKPDSGFAL-FE---SESLKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKN 132 (389)
Q Consensus 72 ~l~~~~~~l~~i~~g~~~~~~~l-~~---~~~~~~~~~v~Fs~pdG~~Las~s~D---------------~tiklWdl~~ 132 (389)
..+.+++.. |++. .+ .. ......+..++|+ |+|+++++...+ +.|..+|..
T Consensus 92 ----~~l~~~d~~-g~~~---~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 92 ----LGLLVVQTD-GTFE---EIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp ----TEEEEEETT-SCEE---ECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred ----CCEEEEeCC-CCEE---EEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 245667766 6641 11 11 0122357789998 899998887655 566677765
Q ss_pred CeEEEEec-CCcEEEEEEc----CCc-eEEEEecCCCCeeEEEEEcC-CCe-----EEEEEeecC-CceeEEEEEecCCC
Q 016446 133 YTMLYSIS-DKHVQEIKIS----PGI-MLLIFNRSSSHVPLKILSIE-DGT-----VLKVFYHLL-HRNKKVDFIEQFNE 199 (389)
Q Consensus 133 g~~l~tl~-~~~V~~vafS----~g~-~la~~~~~s~d~tiklWd~~-tG~-----~l~tl~~~~-~~~~~v~f~~~~~~ 199 (389)
++...... ......++|+ |.+ .|..+. ..++.|.+||+. +|+ .+..+..+. .....+++. +++.
T Consensus 162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~ 238 (314)
T 1pjx_A 162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNN 238 (314)
T ss_dssp SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCC
T ss_pred CCEEEeccCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCC
Confidence 66543333 2457889999 754 565553 334789999986 665 333344333 456778876 5566
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCC
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~ 257 (389)
.+++...++.|.+||.++|+.+..+..+...+.+++|+|||+ ++++.. ++.|..++++
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 666666889999999998988888777878899999999999 566666 7899999985
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=136.81 Aligned_cols=233 Identities=11% Similarity=0.071 Sum_probs=153.9
Q ss_pred cCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeEEEEec---------CCcEEEEEEcCCceEEEEecCC---CCee
Q 016446 101 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS---------DKHVQEIKISPGIMLLIFNRSS---SHVP 166 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~l~tl~---------~~~V~~vafS~g~~la~~~~~s---~d~t 166 (389)
..|..|+|+ |||+++++.. .++.++||.+.+|++. .+. -..+.+|+|++.+.|....... .+..
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 567889998 8999999864 2344888887667643 332 1479999999644455543220 1368
Q ss_pred EEEEEcCCCeEEEEEeec------CCceeEEEEEecCCCeEEEE-e---CCCcEEEEECCCCeEEEEcccCCCceE-EEE
Q 016446 167 LKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFMTPS-AFI 235 (389)
Q Consensus 167 iklWd~~tG~~l~tl~~~------~~~~~~v~f~~~~~~~l~~~-s---~D~tIklWd~~tg~~~~~l~gh~~~v~-sv~ 235 (389)
|.+||+.+|+.++++... ......+++. ++++.+.++ . .++.|.+||+.+|+..+++.+|..... .+.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd-~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD-LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE-TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEe-cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 999999999999888632 1245889987 445555444 4 689999999999999888877643211 256
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|+++|+.+.+.+ |++++.|.. . ++.++|||||++|..+..+ +. +||.+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~------------~------~~gia~s~dg~~ly~~~~~-----------~~-~l~~~~ 223 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL------------G------VNGIVLDAENEWLYLSPMH-----------ST-SMYRIK 223 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC------------C------EEEEEECTTSCEEEEEESS-----------CS-EEEEEE
T ss_pred eeECCEEEEeccCCCceeceec------------c------cceeEeccCCCEEEEEeCC-----------CC-eEEEEE
Confidence 788999888887 888877641 1 5899999999999887654 22 566553
Q ss_pred CCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 315 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 315 tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+... ...... ......... ..++......++++|||+++++...++.|.+|+
T Consensus 224 ~~~~----~~~~~~--------------~~~~~~~~~----~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 224 SADL----SNLQLT--------------DAELGSKIE----RYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHHH----TCTTCC--------------HHHHHTTCE----EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred HHHh----cCCCCC--------------hhhhhcceE----ecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 2110 000000 000000000 000002345689999999999999999999997
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-13 Score=133.44 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=188.7
Q ss_pred ceEEEEEEeeCCCEEEEEEEe-ecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec---
Q 016446 45 EVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--- 120 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~-~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s--- 120 (389)
+..-.+...|||+.+-.+... ...+ ..+.+-|..++++. -+...-..|. ++|| |||++|..++
T Consensus 33 ~~~~~~~~~pd~~~vyV~~~~~~~~~------~~V~ViD~~t~~v~-----~~I~vG~~P~-va~s-pDG~~lyVan~~~ 99 (386)
T 3sjl_D 33 EPRILEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRVI-----GMIDGGFLPN-PVVA-DDGSFIAHASTVF 99 (386)
T ss_dssp CCCBCCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEEE-----EEEEECSSCE-EEEC-TTSSCEEEEEEEE
T ss_pred ccceeeccCCCCCEEEEEcCcccCCC------CEEEEEECCCCeEE-----EEEECCCCCc-EEEC-CCCCEEEEEcccc
Confidence 344456778999987764321 0113 57777888887762 2212222344 9998 9999776554
Q ss_pred -------CCCeEEEEeCCCCeEEEEec-C--------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 121 -------QDSIYKVFDLKNYTMLYSIS-D--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 121 -------~D~tiklWdl~~g~~l~tl~-~--------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
.+++|.+||..+++.+.++. . ..-+.++|| ||++|.++... .+++|.++|+++++.++++.-
T Consensus 100 ~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 100 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTTTEEEEEEEC
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-CCCeEEEEECCCCcEEEEEEC
Confidence 36789999999999888774 1 245679999 68888877432 247999999999999999973
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEEcccCCC----ceE-EEEE-cCCCcEEEEEcCCeEEEEeC
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFM----TPS-AFIF-LYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t-g~~~~~l~gh~~----~v~-sv~f-spdg~~laS~sD~tIklWd~ 256 (389)
... ...+ +.....+++.+.||++-..++.+ ++...+...+.+ .+. ..+| .++|+++....+++|.+-|+
T Consensus 179 --~g~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 179 --PDC-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp --CSE-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred --CCc-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEEC
Confidence 222 2222 33456777788999999999986 676443222221 111 1355 48998766545899999999
Q ss_pred CCc---EEEEec---c---CcCCcCCCCeeEEEECCCCCEEEEEecCCC-cccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 257 RGE---LVTSFE---D---HLLWHPDCNTNNIYITSDQDLIISYCKAEP-EDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 257 ~G~---~l~tl~---g---h~~~~~~~~v~sv~fSpdG~~laS~s~D~~-~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.++ .+..++ . -..|.+.. ...++++|++++|...-.+.. +.+ -...++|-+-|+.|++.++++.--
T Consensus 255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~~h--k~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 255 SSGDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEWRH--KTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTTCT--TSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred CCCcceeecceeccccccccccccCCC-cceeeECCCCCeEEEEecccccccc--CCCCCEEEEEECCCCeEEEEEECC-
Confidence 744 333322 0 01111111 246889999999887643100 000 001257999999999999998642
Q ss_pred CCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 327 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
..+++|+|||||+ +|+++. .+++|-+.|
T Consensus 331 ----------------------------------~~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 331 ----------------------------------HEIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp ----------------------------------EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred ----------------------------------CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 3788999999997 777765 589998877
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-12 Score=127.60 Aligned_cols=234 Identities=10% Similarity=0.064 Sum_probs=161.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC-
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 123 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~- 123 (389)
+....|+|+|+|+.+++ ...+ +.++.++...|++ ..+.. ....+. ++|+ |+|+.|..+..++
T Consensus 131 ~~P~~la~d~~g~lyv~----d~~~------~~I~~id~~~g~~---~~~~~--~~~~~~-ia~~-~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAY----QRDD------PRVRLISVDDNKV---TTVHP--GFKGGK-PAVT-KDKQRVYSIGWEGT 193 (409)
T ss_dssp CCEEEEEECSTTEEEEE----ETTT------TEEEEEETTTTEE---EEEEE--TCCBCB-CEEC-TTSSEEEEEBSSTT
T ss_pred CCceEEEEeCCCCEEEE----ecCC------CcEEEEECCCCEE---EEeec--cCCCCc-eeEe-cCCCcEEEEecCCC
Confidence 35789999999996665 2344 6788888776664 12222 233345 9998 8999888887766
Q ss_pred -eEEEEeCCCCeEEEEe------cCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEE----EeecCCce-e-
Q 016446 124 -IYKVFDLKNYTMLYSI------SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV----FYHLLHRN-K- 189 (389)
Q Consensus 124 -tiklWdl~~g~~l~tl------~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~t----l~~~~~~~-~- 189 (389)
.|.+++..++.....+ ....+++++|+| ++.|..+. .++.|+.||..+++.... ..++.... .
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d---~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD---SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC---TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE---CCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 7889998766654454 246789999996 77776653 257999999988874332 22222222 3
Q ss_pred EEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccC---------------CCceEEEEEcCCCcEEEEEc--CCeE
Q 016446 190 KVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTE---------------FMTPSAFIFLYENQLFLTFR--NRTV 251 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh---------------~~~v~sv~fspdg~~laS~s--D~tI 251 (389)
.++|. |+++.|..+ ..+++|+.||... + +.++.++ ...+..++|+|+|+++++-+ ++.|
T Consensus 271 ~ia~~-p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 271 YLIYY-FVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp EEEEE-TTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred cEEEe-CCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 89998 555566554 6889999999854 4 3444444 35689999999999888875 7799
Q ss_pred EEEeCC-CcEEEEeccCcCC----------cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 252 AVWNFR-GELVTSFEDHLLW----------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~~~----------~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
+.|++. |+ +.++.|+... ........|+|+|||+++++-.. .+.||-.++
T Consensus 348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----------n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----------GKAIRKYAV 408 (409)
T ss_dssp EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----------TCEEEEEEE
T ss_pred EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----------CCeEEEEEe
Confidence 999965 75 5667776110 00012589999999998888644 378887764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=139.10 Aligned_cols=280 Identities=11% Similarity=0.078 Sum_probs=186.1
Q ss_pred eccEEEEEecCceEEEEecccceeeeeeecCCcc---------e-EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 12 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---------V-IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~---------~-v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
.+++|.+.+.++.+..+|.+||+.+=.+...... . -+++++ ++..|+. +..| ..+.-+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v----~~~d------g~l~Al 136 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYV----GVLD------GRLEAI 136 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEE----ECTT------SEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEE----EccC------CEEEEE
Confidence 4788889999999999999999998776543211 0 122333 4566666 3456 566677
Q ss_pred EeccCCCCCcceeEeeecc-c--CceeEEEecC---CCeEEEEec-----CCCeEEEEeCCCCeEEEEecC---C-----
Q 016446 82 YIRRGKPDSGFALFESESL-K--WPGFVEFDDV---NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---K----- 142 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~-~--~~~~v~Fs~p---dG~~Las~s-----~D~tiklWdl~~g~~l~tl~~---~----- 142 (389)
|..+|++ +|..... . ....+..+ | +|++++..+ .|+.|+.||+++|+++.++.. .
T Consensus 137 Da~TG~~-----~W~~~~~~~~~~~~~~~~s-P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 137 DAKTGQR-----AWSVDTRADHKRSYTITGA-PRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp ETTTCCE-----EEEEECCSCTTSCCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeecCcCCCCCCccccCC-cEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 8789987 6663322 1 01122221 3 677777544 479999999999999876641 0
Q ss_pred ------------------------cEE-EEEEcC-CceEEEEecCC------------CC----eeEEEEEcCCCeEEEE
Q 016446 143 ------------------------HVQ-EIKISP-GIMLLIFNRSS------------SH----VPLKILSIEDGTVLKV 180 (389)
Q Consensus 143 ------------------------~V~-~vafS~-g~~la~~~~~s------------~d----~tiklWd~~tG~~l~t 180 (389)
.+| .++|.| ++++..+..++ .| ..|.-||..||+.+-.
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 122 578884 66776654321 01 1499999999999998
Q ss_pred EeecCCcee------EEEEE--ecCCC---eEEEEeCCCcEEEEECCCCeEEEEcccC-CCc------------------
Q 016446 181 FYHLLHRNK------KVDFI--EQFNE---KLLVKQENENLQILDVRNAELMEVSRTE-FMT------------------ 230 (389)
Q Consensus 181 l~~~~~~~~------~v~f~--~~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh-~~~------------------ 230 (389)
++...+..+ .+.+. ..++. .++.++.++.+.++|.++|+++...+-. ..+
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 874222111 11111 12332 5667889999999999999987422110 000
Q ss_pred --------------------eEEEEEcCCCcEEEEEc-------------------------------------------
Q 016446 231 --------------------PSAFIFLYENQLFLTFR------------------------------------------- 247 (389)
Q Consensus 231 --------------------v~sv~fspdg~~laS~s------------------------------------------- 247 (389)
-..++|+|+.+++....
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 01268999988877652
Q ss_pred ---CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 248 ---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 248 ---D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+++|+.||+. |+.+-.++.+... +.-.++..|.+++.|+. |+.|+.||.+||+.+.+++
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~-----------dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSA-----------DGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCcceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECC-----------CCcEEEEECCCCccceeee
Confidence 3789999996 9999888766532 44567778889999865 4999999999999999987
Q ss_pred CCC
Q 016446 324 ATN 326 (389)
Q Consensus 324 gH~ 326 (389)
...
T Consensus 514 ~~~ 516 (689)
T 1yiq_A 514 AAS 516 (689)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-12 Score=121.19 Aligned_cols=226 Identities=9% Similarity=0.091 Sum_probs=155.9
Q ss_pred cccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeE-EEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~-l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG 175 (389)
...++...+|+ |+|+ ++.++..++.|..|+. +|+. .+......+..+++++ |.++ ++. ..++.|.+|+.. |
T Consensus 43 ~~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~-v~~--~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 43 QATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLV-HCE--HGRRAITRSDAD-G 116 (305)
T ss_dssp CCSSEEEEEEE-GGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEE-EEE--TTTTEEEEECTT-S
T ss_pred CCcCccCCeEe-CCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEE-EEE--CCCCEEEEECCC-C
Confidence 34456789998 8887 7788888999999998 5653 3344467899999994 6544 443 233689999975 7
Q ss_pred eEEEEEeec----CCceeEEEEEecCCCeEEE----EeC-------------CCcEEEEECCCCeEEEEcccCCCceEEE
Q 016446 176 TVLKVFYHL----LHRNKKVDFIEQFNEKLLV----KQE-------------NENLQILDVRNAELMEVSRTEFMTPSAF 234 (389)
Q Consensus 176 ~~l~tl~~~----~~~~~~v~f~~~~~~~l~~----~s~-------------D~tIklWd~~tg~~~~~l~gh~~~v~sv 234 (389)
+........ ......+++. +++..+++ +.. .+.|..+|.++|+..... +...+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 744322211 1234678886 55655554 221 356888888888876554 45578899
Q ss_pred EEcCCCcEEEEEc-C------CeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 235 IFLYENQLFLTFR-N------RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 235 ~fspdg~~laS~s-D------~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
+|+|||+.|..+. + +.|..|++. +.+ .+.+..-... ....+++++||++.++. .
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~----~pdgi~~d~~G~lwv~~-~----------- 257 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG----LPDGFCVDRGGWLWSSS-G----------- 257 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS----CCCSEEECTTSCEEECC-S-----------
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC----CCCeEEECCCCCEEEec-C-----------
Confidence 9999999666554 5 789999986 331 1122111111 13579999999977764 2
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcE
Q 016446 305 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tI 384 (389)
+.|.+||. +|+.+.++..+. .+.+++|+||++.|+.++.++..
T Consensus 258 -~gv~~~~~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 258 -TGVCVFDS-DGQLLGHIPTPG-----------------------------------TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp -SEEEEECT-TSCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEEEETTEEE
T ss_pred -CcEEEECC-CCCEEEEEECCC-----------------------------------ceeEEEEeCCCCEEEEEcCCeEE
Confidence 35999996 699998887654 57889999999999998888777
Q ss_pred EE
Q 016446 385 HV 386 (389)
Q Consensus 385 rl 386 (389)
++
T Consensus 301 ~~ 302 (305)
T 3dr2_A 301 ML 302 (305)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-11 Score=115.28 Aligned_cols=225 Identities=11% Similarity=0.063 Sum_probs=156.5
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 123 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~ 123 (389)
...-.+.+|+|+++.|..+. ..+ ..+..|+...++. ..+. ....+..++|+ |||+++++. ++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d---~~~------~~i~~~d~~~~~~----~~~~--~~~~~~~i~~~-~dG~l~v~~--~~ 73 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVD---IPA------KKVCRWDSFTKQV----QRVT--MDAPVSSVALR-QSGGYVATI--GT 73 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEE---TTT------TEEEEEETTTCCE----EEEE--CSSCEEEEEEB-TTSSEEEEE--TT
T ss_pred CccccCCeEECCCCEEEEEE---CCC------CEEEEEECCCCcE----EEEe--CCCceEEEEEC-CCCCEEEEE--CC
Confidence 46778899999877666532 233 5677788766653 1232 33567789998 899977764 67
Q ss_pred eEEEEeCCCCeEEEE--ec----CCcEEEEEEc-CCceEEEEecCCC------CeeEEEEEcC-CCeEEEEEeecCCcee
Q 016446 124 IYKVFDLKNYTMLYS--IS----DKHVQEIKIS-PGIMLLIFNRSSS------HVPLKILSIE-DGTVLKVFYHLLHRNK 189 (389)
Q Consensus 124 tiklWdl~~g~~l~t--l~----~~~V~~vafS-~g~~la~~~~~s~------d~tiklWd~~-tG~~l~tl~~~~~~~~ 189 (389)
.|.+||+++++.... .. ...+++++++ +|.+.++...... ....+||.+. .|+..... .+....+
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pn 152 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISN 152 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-ecccccc
Confidence 899999988885422 22 2358999999 4665544322110 1234566554 35554433 3345568
Q ss_pred EEEEEecCCCeEEE-EeCCCcEEEEEC--CCCeE-----EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-Cc
Q 016446 190 KVDFIEQFNEKLLV-KQENENLQILDV--RNAEL-----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 259 (389)
Q Consensus 190 ~v~f~~~~~~~l~~-~s~D~tIklWd~--~tg~~-----~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~ 259 (389)
.++|+ |++..+.. .+.++.|.+||+ ++|++ +..+..+...+..+++.++|++.++.. ++.|..||.+ |+
T Consensus 153 gi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 153 GLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred ceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 89998 77777755 467899999997 57754 223444556789999999999999887 8899999997 99
Q ss_pred EEEEeccCcCCcCCCCeeEEEEC-CCCCEEEEEec
Q 016446 260 LVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCK 293 (389)
Q Consensus 260 ~l~tl~gh~~~~~~~~v~sv~fS-pdG~~laS~s~ 293 (389)
++.++..+... +.+++|+ ||++.|...+.
T Consensus 232 ~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred EEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence 99999876433 7999998 99998876654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=136.71 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=132.7
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-------------EEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-------------~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tikl 169 (389)
+..++++ +...++++|+.| .+++|++++.+ .+..+. . |..|+| ++.+|+++ .++.|++
T Consensus 40 ~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp-~-V~~l~f-d~~~L~v~----~~~~l~v 110 (388)
T 1xip_A 40 LQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIP-D-VIFVCF-HGDQVLVS----TRNALYS 110 (388)
T ss_dssp CBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECT-T-EEEEEE-ETTEEEEE----ESSEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCC-C-eeEEEE-CCCEEEEE----cCCcEEE
Confidence 3458998 788899999987 56679965433 223333 4 999999 99999887 3379999
Q ss_pred EEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C
Q 016446 170 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 248 (389)
Q Consensus 170 Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D 248 (389)
||+.+-....++..|...+..+.+.+| .+++...||+|.+||++++.+.+ +...|.+++|||+| ++.+. |
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 999877766677777778888887643 38888999999999999888765 44689999999999 45565 9
Q ss_pred CeEEEEeCC-CcE--EEEe------c---cCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 249 RTVAVWNFR-GEL--VTSF------E---DHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 249 ~tIklWd~~-G~~--l~tl------~---gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
|+|++|+.+ +++ .+++ + +|... |.+|.|.+++++|+++...
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-----V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-----PLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-----EEEEEESSSSEEEEEEECC
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCee-----EEEEEEecCCeEEEEEcCC
Confidence 999999998 454 7778 3 35433 8999999999999998753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-12 Score=126.75 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=175.6
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE--e-eec
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF--E-SES 99 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~--~-~~~ 99 (389)
++|.+.|.+|++.+.++.-.. .. .|++||||+.|..+..+.+.-...=.-..+.+.|..+++......+- . ...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 799999999999999999875 56 89999999988886542111000001157888888888762221110 0 001
Q ss_pred ccCceeEEEecCCCeEEEEecC--CCeEEEEeCCCCeEEEEecCCcEEEEEEc-CC-ceEEEEecCCCCeeEEEEEcCCC
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHVQEIKIS-PG-IMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~--D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g-~~la~~~~~s~d~tiklWd~~tG 175 (389)
...|..++|| |||++|..+.. +++|-+-|+++++.+.++.-... +.+. +| ..+++.+ .|+++-.-++.++
T Consensus 176 g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~---~dG~~~~V~~~~~ 249 (426)
T 3c75_H 176 GTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC---RDGSLARVDFADG 249 (426)
T ss_dssp SCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE---TTSSEEEEECCTT
T ss_pred CCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc---CCCCEEEEECCCC
Confidence 2356779998 99998877653 68999999999999888863221 1111 11 2222221 1234444444455
Q ss_pred eEEEEE----eecCCce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE--Ecc---c-------CCCceEEEEEcC
Q 016446 176 TVLKVF----YHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSR---T-------EFMTPSAFIFLY 238 (389)
Q Consensus 176 ~~l~tl----~~~~~~~-~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~---g-------h~~~v~sv~fsp 238 (389)
+...+. .-...++ ..+.|. ++++.++.....++|.+.|+.++.... .+. . .......++|+|
T Consensus 250 ~v~~~~~~~~~v~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 250 ETKVTNTEVFHTEDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred cEEEEeeeeeccCCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 544321 1001111 234555 677787777788999999997654321 110 0 011122378999
Q ss_pred CCcEEEEEc-----------CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC-EEEEEecCCCcccccCCCC
Q 016446 239 ENQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 239 dg~~laS~s-----------D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~-~laS~s~D~~~~~~~~s~D 305 (389)
||+++.... +++|-+.|.. ++.++++.--.. .+.++|+|||+ +|++.... +
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~~----------s 392 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSAG----------T 392 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEETT----------T
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcCC----------C
Confidence 977655442 2479999996 999998874332 37999999999 88888743 4
Q ss_pred CeEEEEeCCCCeEEEEe
Q 016446 306 GSINVSSILTGKCLAKI 322 (389)
Q Consensus 306 ~tIklWd~~tg~~l~tl 322 (389)
++|-++|+.+++.++++
T Consensus 393 ~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEe
Confidence 89999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-12 Score=133.25 Aligned_cols=280 Identities=13% Similarity=0.081 Sum_probs=187.7
Q ss_pred eeccEEEEEecCceEEEEecccceeeeeeecCCcc----------eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~----------~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
..+++|.+.+.++.+..+|..||+.+=+....... ..+++++ ++..|+. +..| ..+..
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v----~~~d------g~l~a 142 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYV----GAWD------GRLIA 142 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEE----ECTT------SEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEE----EcCC------CEEEE
Confidence 34788888888999999999999998766543210 1134444 4566666 3455 56667
Q ss_pred eEeccCCCCCcceeEeeecc-c-----Cce-eEEEecCCCeEEEEec-----CCCeEEEEeCCCCeEEEEecC-C-c---
Q 016446 81 EYIRRGKPDSGFALFESESL-K-----WPG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD-K-H--- 143 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~-~-----~~~-~v~Fs~pdG~~Las~s-----~D~tiklWdl~~g~~l~tl~~-~-~--- 143 (389)
.|..+|+. +|..... . .+. .... .++++++..+ .|+.|+.+|+++|+++.++.. . .
T Consensus 143 lD~~tG~~-----~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 215 (677)
T 1kb0_A 143 LDAATGKE-----VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSK 215 (677)
T ss_dssp EETTTCCE-----EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred EECCCCCE-----EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccc
Confidence 78788887 6653322 1 111 1222 2576666544 379999999999999877641 1 0
Q ss_pred ----------------------------E-EEEEEc-CCceEEEEecCC------------CC----eeEEEEEcCCCeE
Q 016446 144 ----------------------------V-QEIKIS-PGIMLLIFNRSS------------SH----VPLKILSIEDGTV 177 (389)
Q Consensus 144 ----------------------------V-~~vafS-~g~~la~~~~~s------------~d----~tiklWd~~tG~~ 177 (389)
+ ..++|. +++++..+..+. .| .+|.-+|..||+.
T Consensus 216 ~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~ 295 (677)
T 1kb0_A 216 PFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY 295 (677)
T ss_dssp CCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred cccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE
Confidence 1 247888 466776654321 11 2599999999999
Q ss_pred EEEEeecCCc------eeEEEEE--ecCC---CeEEEEeCCCcEEEEECCCCeEEEEcccCC-Cc----------e----
Q 016446 178 LKVFYHLLHR------NKKVDFI--EQFN---EKLLVKQENENLQILDVRNAELMEVSRTEF-MT----------P---- 231 (389)
Q Consensus 178 l~tl~~~~~~------~~~v~f~--~~~~---~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-~~----------v---- 231 (389)
+-.++...+. .....+. ..++ ..++.++.++.+.++|.++|+++...+-.. .+ +
T Consensus 296 ~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~ 375 (677)
T 1kb0_A 296 KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAA 375 (677)
T ss_dssp EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGG
T ss_pred EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccc
Confidence 9988742221 1111111 1245 456778899999999999999976543211 00 1
Q ss_pred --------------------EEEEEcCCCcEEEEEc-C------------------------------------------
Q 016446 232 --------------------SAFIFLYENQLFLTFR-N------------------------------------------ 248 (389)
Q Consensus 232 --------------------~sv~fspdg~~laS~s-D------------------------------------------ 248 (389)
..++|+|++.++.... +
T Consensus 376 ~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 455 (677)
T 1kb0_A 376 ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP 455 (677)
T ss_dssp GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred cCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence 1578999988887653 2
Q ss_pred -CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 249 -RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 249 -~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
++|..||+. |+.+-.++... + +++..++++|.+++.++. |+++++||+.||+++.++.-..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~~-~-----~~~g~~~~~g~~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHVS-P-----WNGGTLTTAGNVVFQGTA-----------DGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-S-----CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred ccEEEEEeCCCCcEEeecCCCC-C-----CcCcceEeCCCEEEEECC-----------CCcEEEEECCCCceeeeeeCCC
Confidence 789999996 99988776332 2 356678889999998865 4999999999999999997543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-13 Score=132.01 Aligned_cols=284 Identities=6% Similarity=-0.056 Sum_probs=173.6
Q ss_pred ccEEEEEecCc----eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 13 RDIVFALAHSG----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 13 ~~~~a~~~~~g----tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
....++...++ ++-+.|.+|++.+.++.... .. .++|||||++|..+..+......+-.-..+.++|+.+++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 44445555555 88899999999999998876 56 7999999999988764321100001127899999999987
Q ss_pred CCcceeEeee---cccCceeEEEecCCCeEEEEecC--CCeEEE--EeCCCCeEEEEecCCcEEEEEEc-CCceEEEEec
Q 016446 89 DSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKV--FDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 89 ~~~~~l~~~~---~~~~~~~v~Fs~pdG~~Las~s~--D~tikl--Wdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~ 160 (389)
.....+-... ....|..++|| |||++|..+.. +.+|.+ +|+++ +.++.-... +.+. +|.....+
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~-- 180 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYL-- 180 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEEC--
T ss_pred EEEEECCCccccccCCCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEE--
Confidence 3221110000 11347789998 99998887653 567999 99877 444431110 1112 22222221
Q ss_pred CCCCeeEEEEEcCC-----CeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe--EEEEcc------
Q 016446 161 SSSHVPLKILSIED-----GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSR------ 225 (389)
Q Consensus 161 ~s~d~tiklWd~~t-----G~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~--~~~~l~------ 225 (389)
.+.|+++-.-|+.+ |+.+.+.. .+.+.-.. + . ++++.++..+. ++|.+-|+.++. .+..+.
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-E-TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 22344444556555 44331100 00011111 3 3 56777777777 999999997643 233221
Q ss_pred -cCCCce---EEEEEcCCCcEEEEE-c-C--------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEE
Q 016446 226 -TEFMTP---SAFIFLYENQLFLTF-R-N--------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 290 (389)
Q Consensus 226 -gh~~~v---~sv~fspdg~~laS~-s-D--------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS 290 (389)
.+.... ..++|+|||+.+..+ . + +.+.++|+. ++.++++.-... .+.++|+|||++++.
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNY 330 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEE
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECCCCCEEEE
Confidence 011111 127899998766543 3 3 255699996 999998875543 379999999985544
Q ss_pred EecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 291 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 291 ~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
++. ..+++|.++|+.+++.++++....
T Consensus 331 a~~---------~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 331 ANS---------AGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEE---------TTTTEEEEEESSSCEEEEECCCCS
T ss_pred Ecc---------CCCCeEEEEECCCCcEEEEEECCC
Confidence 443 014899999999999999998664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-15 Score=146.59 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=109.5
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce-e
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-K 189 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~-~ 189 (389)
++.+|+.++.|++|+.||+++|+++.++....+.+..+. +|..++++ +.|++|+.||.+||+++..++.+.... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~---s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD---PNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEEC---TTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEe---CCCCEEEEEECCCCceeeeeeccCccccc
Confidence 356788889999999999999999987765556555555 55566543 456899999999999988776432211 1
Q ss_pred -EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 190 -KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 190 -~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
+..+ ..++.+++++.|++|..||.++|+++..+..+. .+.++|++.+++.++ |++|..||.. |+++.+++.
T Consensus 85 ~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 85 ASPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred cCceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 1111 135677788899999999999999988877664 245678888888888 9999999996 998766653
Q ss_pred CcCCcCCCCeeEEEECCCC---CEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 267 HLLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG---~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
+. ..+.++++++ ..++.++. ||.|+.||..+|+++.+.+-
T Consensus 159 ~~-------~~~~~~~~~~~~~~~v~~~~~-----------dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 159 FD-------YAASLPEDDVDYKMSHFVSNG-----------DGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EE-------ECCBCCCCCTTCCCCEEEEET-----------SCEEEEECTTTCCEEEEEEC
T ss_pred cc-------ccCccccCCccccceEEEECC-----------CCEEEEEECCCCcEEEEecC
Confidence 32 1234445542 34444554 48999999999999988763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-10 Score=112.24 Aligned_cols=272 Identities=13% Similarity=0.142 Sum_probs=171.3
Q ss_pred EeeccEEEEEecCceEEEEecccceeeeeeecCC--------cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEe
Q 016446 10 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSP--------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 81 (389)
Q Consensus 10 ~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~--------~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~ 81 (389)
+..++.|.+++.++.+..+|.++|+.+-...... ...+.+...- ++..|..+ +.+ ..+...
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~----~~~------g~l~a~ 118 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIG----SEK------AQVYAL 118 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEE----ETT------SEEEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEE----cCC------CEEEEE
Confidence 3458889999999999999999999886666532 1223332222 34455552 345 566777
Q ss_pred EeccCCCCCcceeEeeecccCcee-EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-CcE------EEEEEcCCc
Q 016446 82 YIRRGKPDSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHV------QEIKISPGI 153 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~-v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V------~~vafS~g~ 153 (389)
|..+|+. +|.......+.+ .... +| .|..++.++.|..+|.++|+.+..... ..+ ...++.++
T Consensus 119 d~~tG~~-----~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~- 189 (376)
T 3q7m_A 119 NTSDGTV-----AWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFG- 189 (376)
T ss_dssp ETTTCCE-----EEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETT-
T ss_pred ECCCCCE-----EEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECC-
Confidence 8788886 565333222222 3343 45 455577899999999999998877652 222 22233344
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce----eE---EEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEEcc
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN----KK---VDFIE-QFNEKLLVKQENENLQILDVRNAELMEVSR 225 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~----~~---v~f~~-~~~~~l~~~s~D~tIklWd~~tg~~~~~l~ 225 (389)
.+.++ ..++.+..+|..+|+.+.+.......- .. +...+ ..++.+.+++.++.+..+|.++|+.+....
T Consensus 190 ~v~~g---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 190 AAVVG---GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEEC---CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEE---cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 45444 335789999999999998876321100 00 10100 136788888899999999999999876644
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCC
Q 016446 226 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 304 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~ 304 (389)
. .....++. .++++++...++.|..+|.. |+.+...+...... +.+..+ .+..|..++.
T Consensus 267 ~--~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~----~~~~~~--~~~~l~v~~~----------- 326 (376)
T 3q7m_A 267 L--GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL----LTSPVL--YNGNLVVGDS----------- 326 (376)
T ss_dssp C--CCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC----CCCCEE--ETTEEEEECT-----------
T ss_pred C--CCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc----ccCCEE--ECCEEEEEeC-----------
Confidence 2 22334433 35555555559999999996 99877665221111 222232 3455666554
Q ss_pred CCeEEEEeCCCCeEEEEecC
Q 016446 305 AGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 305 D~tIklWd~~tg~~l~tl~g 324 (389)
+|.|..+|..+|+.+...+.
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEec
Confidence 48999999999999988765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-10 Score=111.22 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=152.5
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
....+.+|+|+++.|..+. ..+ ..+..++...|+. ..+. ....+.+++|+ |||+++++. . ..
T Consensus 49 ~~~egp~~~~~~~~l~~~d---~~~------~~i~~~d~~~~~~----~~~~--~~~~v~~i~~~-~dg~l~v~~-~-~g 110 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFN---ILE------RELHELHLASGRK----TVHA--LPFMGSALAKI-SDSKQLIAS-D-DG 110 (326)
T ss_dssp SBEEEEEEETTTTEEEEEE---GGG------TEEEEEETTTTEE----EEEE--CSSCEEEEEEE-ETTEEEEEE-T-TE
T ss_pred CCCcCCeEeCCCCEEEEEE---CCC------CEEEEEECCCCcE----EEEE--CCCcceEEEEe-CCCeEEEEE-C-CC
Confidence 4567889999987766642 233 5677778666653 1232 22456789998 899988865 3 45
Q ss_pred EEEEeCCCCeEEEEec------CCcEEEEEEcC-CceEEEEecC-CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 125 YKVFDLKNYTMLYSIS------DKHVQEIKISP-GIMLLIFNRS-SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 125 iklWdl~~g~~l~tl~------~~~V~~vafS~-g~~la~~~~~-s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
|.+||..+|+...... ...+.+++++| |...++.... ......+||.+.+|+...... +......++|+ +
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~i~~s-~ 188 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFS-P 188 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEEC-T
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC-CCcccCCeEEc-C
Confidence 9999998888543222 13689999995 6554433211 011234455444676554333 33456788887 6
Q ss_pred CCCeEEEE-eCCCcEEEEECC--CC-e-----EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEecc
Q 016446 197 FNEKLLVK-QENENLQILDVR--NA-E-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 266 (389)
Q Consensus 197 ~~~~l~~~-s~D~tIklWd~~--tg-~-----~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~g 266 (389)
++..+..+ +.++.|.+||+. +| + .+..+.++...+..+++.++|++.++.. ++.|..||.+|+++.++..
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC
Confidence 77777665 578999999986 77 3 2334444556788999999999998886 7899999999998888876
Q ss_pred CcCCcCCCCeeEEEEC-CCCCEEEEEec
Q 016446 267 HLLWHPDCNTNNIYIT-SDQDLIISYCK 293 (389)
Q Consensus 267 h~~~~~~~~v~sv~fS-pdG~~laS~s~ 293 (389)
+... +.+++|+ ||++.|..++.
T Consensus 269 ~~~~-----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQ-----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSB-----EEEEEEESTTSCEEEEEEB
T ss_pred CCCC-----cEEEEEecCCCCEEEEEec
Confidence 5543 7899998 99988866554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=116.11 Aligned_cols=289 Identities=9% Similarity=0.015 Sum_probs=198.5
Q ss_pred eccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 12 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
.+..|.+++.++.+..|| .+|+.+...... ...+.+++..++|...+. .+ . +..+| ++|+.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~v~------t~------~-l~~~d-~~g~~--- 89 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIGKDGTIYFG------SD------K-VYAIN-PDGTE--- 89 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEETTTTEECCS------SC------E-EEEEC-CCGGG---
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEecCCcEEEe------cC------c-EEEEC-CCCcE---
Confidence 366788888899999999 789988776654 367789999888875443 22 2 44445 35554
Q ss_pred ceeEeeeccc-CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEE
Q 016446 92 FALFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 92 ~~l~~~~~~~-~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tik 168 (389)
+|...... .....++. +|.+.+ ++.++.+..+|.. |+.+.... ...+.++.+.+++.+..+. .++.|.
T Consensus 90 --~~~~~~~~~~~~~~~~~--~~~l~v-~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt---~~~~l~ 160 (330)
T 3hxj_A 90 --KWRFDTKKAIVSDFTIF--EDILYV-TSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS---NDNYLY 160 (330)
T ss_dssp --GGGSCC-----CCEEEE--TTEEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC---TTSEEE
T ss_pred --EEEEECCCCcccCceEE--CCEEEE-EecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc---CCCEEE
Confidence 22111000 11234443 565544 6778999999987 88776654 3456677777444454553 346899
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcC
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN 248 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD 248 (389)
.+|.. |+.+..+......+..+.+. .++.+.+++ +.|..+| .+|+.+.........+.++++.++|++.+...+
T Consensus 161 ~~d~~-g~~~~~~~~~~~~~~~~~~d--~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ 234 (330)
T 3hxj_A 161 AINPD-GTEKWRFKTNDAITSAASIG--KDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD 234 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEEC--TTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETT
T ss_pred EECCC-CCEeEEEecCCCceeeeEEc--CCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCC
Confidence 99988 99988887544555555542 245666666 8999999 788887776666677889999999998887777
Q ss_pred CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 249 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 249 ~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
+.|..+|.+|+.+..+...... +.++++.++|++.+. + .++.|..+|. +|+.+..+.-..
T Consensus 235 ~gl~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v~-t-----------~~ggl~~~d~-~g~~~~~~~~~~-- 294 (330)
T 3hxj_A 235 GHLYAINPDGTEKWRFKTGKRI-----ESSPVIGNTDTIYFG-S-----------YDGHLYAINP-DGTEKWNFETGS-- 294 (330)
T ss_dssp TEEEEECTTSCEEEEEECSSCC-----CSCCEECTTSCEEEE-C-----------TTCEEEEECT-TSCEEEEEECSS--
T ss_pred CeEEEECCCCCEeEEeeCCCCc-----cccceEcCCCeEEEe-c-----------CCCCEEEECC-CCcEEEEEEcCC--
Confidence 7777788888887776644332 356778888887765 3 2478999995 788887765433
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 387 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW 387 (389)
..+.++.++++|++. -|+.+|.+++-
T Consensus 295 --------------------------------~~~~~~~~d~~g~l~-~gt~~G~~~~~ 320 (330)
T 3hxj_A 295 --------------------------------WIIATPVIDENGTIY-FGTRNGKFYAL 320 (330)
T ss_dssp --------------------------------CCCSCCEECTTCCEE-EECTTSCEEEE
T ss_pred --------------------------------ccccceEEcCCCEEE-EEcCCCeEEEE
Confidence 356778889999855 57889988764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=124.66 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=182.6
Q ss_pred eeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec----------CC
Q 016446 53 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QD 122 (389)
Q Consensus 53 spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s----------~D 122 (389)
.|+++.+..+. ... .+++ ..+.+-|..++++ +.+...-..| .++|| |||++|..+. .+
T Consensus 81 ~~~~~~vyV~n--~~~--~~~~-~~VsVID~~t~~v-----v~~I~vG~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 81 APDARRVYIQD--PAH--FAAI-TQQFVIDGSTGRI-----LGMTDGGFLP-HPVAA-EDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCCTTEEEEEE--CTT--TCSS-EEEEEEETTTTEE-----EEEEEECSSC-EEEEC-TTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEC--CCc--CCCC-CeEEEEECCCCEE-----EEEEECCCCC-ceEEC-CCCCEEEEEeccccccccCCCC
Confidence 46777655533 111 2223 6788888888876 2222233356 89998 8999776554 46
Q ss_pred CeEEEEeCCCCeEEEEec-C--------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEE
Q 016446 123 SIYKVFDLKNYTMLYSIS-D--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 192 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~--------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~ 192 (389)
++|.++|..+++.+.++. . ..-..++|| ||++|.++... .+++|-+.|+.+++.++++.- ... +.
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t~kvv~~I~v--~g~--~~ 223 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEGKTFDRMLDV--PDC--YH 223 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-SSCEEEEEETTTTEEEEEEEC--CSE--EE
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-CCCeEEEEECCCCeEEEEEEc--CCc--ee
Confidence 799999999999887764 2 234578999 68888887532 247899999999999999873 221 22
Q ss_pred EEecCC-CeEEEEeCCCcEEEEECCCCeEEEE----cccCCCce-EEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE---E
Q 016446 193 FIEQFN-EKLLVKQENENLQILDVRNAELMEV----SRTEFMTP-SAFIFLYENQLFLTFR-NRTVAVWNFRGELV---T 262 (389)
Q Consensus 193 f~~~~~-~~l~~~s~D~tIklWd~~tg~~~~~----l~gh~~~v-~sv~fspdg~~laS~s-D~tIklWd~~G~~l---~ 262 (389)
.. |++ ..+++-+.|+++-+.+..+++...+ +.-....+ ..++|+|+++.++-.+ .++|-+-|..+.-+ .
T Consensus 224 ~~-p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 224 IF-PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA 302 (426)
T ss_dssp EE-EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred ec-cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence 22 333 4445567888888888877766532 11111111 2357899988877766 88999999864322 2
Q ss_pred Eecc---C---cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC---CCCeEEEEeCCCCeEEEEecCCCCCCCccc
Q 016446 263 SFED---H---LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG---SAGSINVSSILTGKCLAKINATNCSPKVDD 333 (389)
Q Consensus 263 tl~g---h---~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s---~D~tIklWd~~tg~~l~tl~gH~~~~~~~~ 333 (389)
+++- . ..+.+. ....++|+|||++|....... ..++ .+++|-+.|+.|++.++++..-.
T Consensus 303 ~~~~~~~~~i~~g~~p~-g~~~va~s~dg~rlyVa~~~~----~~gthk~~s~~VsVID~~T~kvv~~I~vg~------- 370 (426)
T 3c75_H 303 PIEALTEAERADDWRPG-GWQQTAYHRQSDRIYLLVDQR----DEWKHKAASRFVVVLNAETGERINKIELGH------- 370 (426)
T ss_dssp CEESSCTTTGGGTEEEC-SSSCEEEEGGGTEEEEEEEEC----CTTCTTSCEEEEEEEETTTCCEEEEEEEEE-------
T ss_pred eeeeccccccccccccC-CceeeEEcCCCCEEEEEeccc----ccccccCCCCEEEEEECCCCeEEEEEECCC-------
Confidence 2110 0 001110 023489999999777653210 0000 13589999999999999996432
Q ss_pred ccCCCCCCCccccccccceecccccccCCEEEEEECCCCC-EEEEec-CCCcEEEcc
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~ 388 (389)
..++++|+|||+ .|+++. .+++|-+.|
T Consensus 371 ----------------------------~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 371 ----------------------------EIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp ----------------------------EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ----------------------------CcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 578899999999 999998 599999887
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-11 Score=128.69 Aligned_cols=269 Identities=12% Similarity=0.083 Sum_probs=171.9
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccC------------ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKW------------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 142 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~------------~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~- 142 (389)
..+.-.|..+|+. +|..+.... ...++.. +| .|..++.|+.+.-+|.++|+++......
T Consensus 80 ~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~g-~v~v~~~dg~l~AlDa~TG~~~W~~~~~~ 151 (689)
T 1yiq_A 80 SVVYALDARDGRL-----IWKYDPQSDRHRAGEACCDAVNRGVAVW--KG-KVYVGVLDGRLEAIDAKTGQRAWSVDTRA 151 (689)
T ss_dssp GCEEEEETTTCCE-----EEEECCCCCGGGGGGCTTCSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCS
T ss_pred CeEEEEECCCCce-----eEEEcCCCCccccccccccCCCCccEEE--CC-EEEEEccCCEEEEEECCCCCEeeeecCcC
Confidence 3455567788886 666331110 1224553 45 5566788999999999999998666421
Q ss_pred ---cEEEEEEcC---CceEEEEecCC---CCeeEEEEEcCCCeEEEEEeecC----------------------------
Q 016446 143 ---HVQEIKISP---GIMLLIFNRSS---SHVPLKILSIEDGTVLKVFYHLL---------------------------- 185 (389)
Q Consensus 143 ---~V~~vafS~---g~~la~~~~~s---~d~tiklWd~~tG~~l~tl~~~~---------------------------- 185 (389)
....+..+| +..++++.... .++.|+-||.+||+++-++..-.
T Consensus 152 ~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~ 231 (689)
T 1yiq_A 152 DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQG 231 (689)
T ss_dssp CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHC
T ss_pred CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecC
Confidence 112222223 45555543321 36899999999999998875210
Q ss_pred --Cce-eEEEEEecCCCeEEEEeCCCc-------------------EEEEECCCCeEEEEccc--CCC-------ceEEE
Q 016446 186 --HRN-KKVDFIEQFNEKLLVKQENEN-------------------LQILDVRNAELMEVSRT--EFM-------TPSAF 234 (389)
Q Consensus 186 --~~~-~~v~f~~~~~~~l~~~s~D~t-------------------IklWd~~tg~~~~~l~g--h~~-------~v~sv 234 (389)
+.+ ..+++. +..+.+..+..+++ |..||.+||+.+-.+.. |.. .+...
T Consensus 232 ~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~ 310 (689)
T 1yiq_A 232 GGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILA 310 (689)
T ss_dssp EECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEE
Confidence 111 246666 56778888877653 99999999999876543 321 11122
Q ss_pred EEcCCCc---EEEEEc-CCeEEEEeCC-CcEEEEecc-CcCCcC--------------------------------CC-C
Q 016446 235 IFLYENQ---LFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHP--------------------------------DC-N 275 (389)
Q Consensus 235 ~fspdg~---~laS~s-D~tIklWd~~-G~~l~tl~g-h~~~~~--------------------------------~~-~ 275 (389)
....+|+ +++.++ +|.+.++|.. |+++...+- +..|.. .. .
T Consensus 311 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~ 390 (689)
T 1yiq_A 311 ELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHD 390 (689)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSC
T ss_pred eeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccC
Confidence 2234776 788887 9999999996 998743221 000000 00 0
Q ss_pred eeEEEECCCCCEEEEEecCCCcc---------------cccC-------------------CCCCeEEEEeCCCCeEEEE
Q 016446 276 TNNIYITSDQDLIISYCKAEPED---------------QWME-------------------GSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~---------------~~~~-------------------s~D~tIklWd~~tg~~l~t 321 (389)
-..++|+|+.+++...+.+-+-. .+.. ..+|+|+.||+.||+.+.+
T Consensus 391 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 470 (689)
T 1yiq_A 391 WQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWE 470 (689)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEE
T ss_pred CCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeE
Confidence 12489999999998875431100 0000 1258999999999999999
Q ss_pred ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 322 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 322 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
++.+. .++.-.++..|..++.|+.|+.|+.||
T Consensus 471 ~~~~~-----------------------------------~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 471 VPYVT-----------------------------------IFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEESS-----------------------------------SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ccCCC-----------------------------------CccCccceECCCEEEEECCCCcEEEEE
Confidence 87664 333346777889999999999999998
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-11 Score=111.75 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=157.4
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
+..+..+..+ ..+....+|+|+|+.|+.+ ...+ ..+..|+. .|+. ..|. .....+..++|+ |+
T Consensus 34 ~~~~~~l~~~-~~~~egp~~~~~g~~l~~~---d~~~------~~i~~~~~-~g~~----~~~~-~~~~~~~gl~~d-~d 96 (305)
T 3dr2_A 34 DARLLTLYDQ-ATWSEGPAWWEAQRTLVWS---DLVG------RRVLGWRE-DGTV----DVLL-DATAFTNGNAVD-AQ 96 (305)
T ss_dssp TCCCEEEECC-CSSEEEEEEEGGGTEEEEE---ETTT------TEEEEEET-TSCE----EEEE-ESCSCEEEEEEC-TT
T ss_pred CCceEEEecC-CcCccCCeEeCCCCEEEEE---ECCC------CEEEEEeC-CCCE----EEEe-CCCCccceeeEC-CC
Confidence 4455556654 3788999999999966553 2334 45666764 5653 2333 234456789998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCCeEEEEec---C---CcEEEEEEc-CCceEEE----EecC----------CCCeeEEEEE
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYTMLYSIS---D---KHVQEIKIS-PGIMLLI----FNRS----------SSHVPLKILS 171 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~~l~tl~---~---~~V~~vafS-~g~~la~----~~~~----------s~d~tiklWd 171 (389)
|+++++...++.|.+|+.. |+...... + ..+.+++++ +|.+.++ +... .....|..+|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9988887777899999985 76432221 1 357789999 4655543 1100 0125688888
Q ss_pred cCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC------CcEEEEECCCCeE--EEEc-ccCCCceEEEEEcCCCcE
Q 016446 172 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAEL--MEVS-RTEFMTPSAFIFLYENQL 242 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D------~tIklWd~~tg~~--~~~l-~gh~~~v~sv~fspdg~~ 242 (389)
..+|+..... .......++|+ |++..|..+..+ +.|.+||+..+.+ .+.+ ......+..+++.++|++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 8788765543 33556789997 777777776543 7999999976542 1111 223345667899999997
Q ss_pred EEEEcCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 243 FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 243 laS~sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
.++..++ |.+|+.+|+++..+..+.. +.+++|+||++.|..++.
T Consensus 253 wv~~~~g-v~~~~~~g~~~~~~~~~~~------~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 253 WSSSGTG-VCVFDSDGQLLGHIPTPGT------ASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECCSSE-EEEECTTSCEEEEEECSSC------CCEEEECTTSCEEEEEET
T ss_pred EEecCCc-EEEECCCCCEEEEEECCCc------eeEEEEeCCCCEEEEEcC
Confidence 7766454 9999999999988875542 579999999998887754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-12 Score=125.49 Aligned_cols=168 Identities=11% Similarity=0.046 Sum_probs=127.8
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe-----------EEEEEeecCCceeEEEEEecCCCeEEEEeCCCc
Q 016446 142 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT-----------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 209 (389)
Q Consensus 142 ~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~-----------~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~t 209 (389)
..+..+++| ..+++++++.+ .+++|+++..+ ..... .+.. +..|+| ++..|+++ .++.
T Consensus 38 ~~~nlLais~~~gll~a~~~~----~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS----KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT----EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred ccccEEEEcCCCCEEEEeCCC----EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 468889999 47777776543 68889876443 11122 2445 999999 57777777 9999
Q ss_pred EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 210 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 210 IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
|++||+.+-.....+..|...+.++.+.+.. +|... ||+|.+||+. +.+.. + ... |.++++||+|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~---~~~-----Vs~v~WSpkG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L---AQN-----VTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E---EES-----EEEEEECSSE--
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c---cCC-----ceEEEEcCCc--
Confidence 9999998877666677888889998887653 66666 9999999996 77654 2 222 8999999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeE--EEEe------c---CCCCCCCcccccCCCCCCCccccccccceeccc
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI------N---ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 356 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~--l~tl------~---gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
++.|+.| |+|++|+...+++ .+++ . +|.
T Consensus 175 ~~vg~~d-----------g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~------------------------------ 213 (388)
T 1xip_A 175 LAVLLKD-----------RSFQSFAWRNGEMEKQFEFSLPSELEELPVEE------------------------------ 213 (388)
T ss_dssp EEEEETT-----------SCEEEEEEETTEEEEEEEECCCHHHHTSCTTT------------------------------
T ss_pred eEEEEcC-----------CcEEEEcCCCccccccceecCCcccccccCCC------------------------------
Confidence 5666654 9999999888887 7777 2 233
Q ss_pred ccccCCEEEEEECCCCCEEEE
Q 016446 357 GEALEDITSLFYDEERNEIYT 377 (389)
Q Consensus 357 ~~~~~~V~svafSpdg~~LaS 377 (389)
..|.+|.|.+++++|++
T Consensus 214 ----~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 214 ----YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ----SEEEEEEESSSSEEEEE
T ss_pred ----eeEEEEEEecCCeEEEE
Confidence 58999999999999987
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-10 Score=124.90 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=162.0
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-------cEEE-EEEcCCceEEEEecCC---CCeeEEEEEcC
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------HVQE-IKISPGIMLLIFNRSS---SHVPLKILSIE 173 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-------~V~~-vafS~g~~la~~~~~s---~d~tiklWd~~ 173 (389)
.+++. ++ .|..++.|+.+..+|.++|+.+.++... .+.+ ..+. +.++.++.... .++.|+.+|.+
T Consensus 123 ~~a~~--~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 123 GVALW--KG-KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp CCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred CceEE--CC-EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECC
Confidence 35664 45 4555788999999999999998776522 2221 1222 44555543322 26899999999
Q ss_pred CCeEEEEEeecCCc--------------------------------eeEEEEEecCCCeEEEEeCCC-------------
Q 016446 174 DGTVLKVFYHLLHR--------------------------------NKKVDFIEQFNEKLLVKQENE------------- 208 (389)
Q Consensus 174 tG~~l~tl~~~~~~--------------------------------~~~v~f~~~~~~~l~~~s~D~------------- 208 (389)
||+++.++...... ...+++. ++++.+..+..++
T Consensus 199 tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 199 TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCC
Confidence 99999888632111 0245665 5677887776553
Q ss_pred ------cEEEEECCCCeEEEEccc--CC-------CceEEEEEcCCC---cEEEEEc-CCeEEEEeCC-CcEEEEeccCc
Q 016446 209 ------NLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDHL 268 (389)
Q Consensus 209 ------tIklWd~~tg~~~~~l~g--h~-------~~v~sv~fspdg---~~laS~s-D~tIklWd~~-G~~l~tl~gh~ 268 (389)
+|..+|.+||+.+-.+.. |. ..+.-+.+..|| ++++.++ +|.+.++|.+ |+++..++-..
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 599999999999766543 32 123334445588 6788887 9999999996 99987664211
Q ss_pred -CCc----CCCC-e------------------------eEEEECCCCCEEEEEecCCCcc--------------------
Q 016446 269 -LWH----PDCN-T------------------------NNIYITSDQDLIISYCKAEPED-------------------- 298 (389)
Q Consensus 269 -~~~----~~~~-v------------------------~sv~fSpdG~~laS~s~D~~~~-------------------- 298 (389)
.+. ..|. + ..++|+|+++++...+.+-+..
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 100 0000 0 2689999999988865431100
Q ss_pred -ccc-----------CCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE
Q 016446 299 -QWM-----------EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 366 (389)
Q Consensus 299 -~~~-----------~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv 366 (389)
+.- ....++|..||+.||+.+..++... .+++.
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~g 482 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-----------------------------------PWNGG 482 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCC
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-----------------------------------CCcCc
Confidence 000 0023889999999999998886432 45556
Q ss_pred EECCCCCEEEEecCCCcEEEcc
Q 016446 367 FYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 367 afSpdg~~LaSgs~D~tIrlW~ 388 (389)
.++++|..++.|+.|+.+++||
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEE
Confidence 7788999999999999999997
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-13 Score=131.16 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=82.8
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCC-
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM- 229 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~- 229 (389)
+++++++++ .|++|+.||.+||+++.+++. +.+.+..+. .++..+++++.|++|..||.++|+.+..++.+..
T Consensus 8 ~~~~v~~gs---~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVST---LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEE---TTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 466777764 347999999999999999985 455544444 3344666678999999999999998777654422
Q ss_pred ceE-EEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCC
Q 016446 230 TPS-AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 306 (389)
Q Consensus 230 ~v~-sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~ 306 (389)
.+. +.++..++ +++.++ |++|..||.. |+++.++..+. .+.++|++.+|+.++.| +
T Consensus 82 ~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~d-----------g 140 (369)
T 2hz6_A 82 LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRTE-----------Y 140 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEE-----------E
T ss_pred ccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEecC-----------C
Confidence 111 11122344 556666 9999999997 99988887653 24567899999998764 8
Q ss_pred eEEEEeCCCCeEEEEecC
Q 016446 307 SINVSSILTGKCLAKINA 324 (389)
Q Consensus 307 tIklWd~~tg~~l~tl~g 324 (389)
+|+.||..+|+++..+..
T Consensus 141 ~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 141 TITMYDTKTRELRWNATY 158 (369)
T ss_dssp EEECCCSSSSSCCCEEEE
T ss_pred EEEEEECCCCCEEEeEec
Confidence 999999999998877654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-11 Score=116.98 Aligned_cols=255 Identities=10% Similarity=0.070 Sum_probs=158.0
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec----------CCCeEEEEeCCCCeEEEEec-C----
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D---- 141 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s----------~D~tiklWdl~~g~~l~tl~-~---- 141 (389)
++.+.|..++++. -+...-..| .++|| |||++|..+. .+++|.+||+.+++.+.++. +
T Consensus 47 ~vsvID~~t~~v~-----~~i~vG~~P-~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTL-----GHSLGAFLS-LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEE-----EEEEECTTC-EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEE-----EEEeCCCCC-ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 5666777777762 221222235 79998 8999877775 37899999999999998874 2
Q ss_pred ----CcEEEEEEc-CCceEEEEecCCCCeeEEE--EEcCCCeEEEEEeecCCceeEEEEEecCCC-eEEEEeCCCcEEEE
Q 016446 142 ----KHVQEIKIS-PGIMLLIFNRSSSHVPLKI--LSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQIL 213 (389)
Q Consensus 142 ----~~V~~vafS-~g~~la~~~~~s~d~tikl--Wd~~tG~~l~tl~~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklW 213 (389)
..-..++|| ||++|+++... ....+.+ +|+.+ ++++.- ... +.+. |++. ..++.+.|+++-+-
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t---v~~i~v--~~~--~~~~-p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFG-SSAAAGLSVPGASD---DQLTKS--ASC--FHIH-PGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECS-SSCEEEEEETTTEE---EEEEEC--SSC--CCCE-EEETTEEECCCCTTSCEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccC-CCCeEEEEEEchhh---ceEEEC--CCc--eEEc-cCCCeEEEEEcCCCCEEEE
Confidence 345689999 68888887533 1246777 99877 566642 111 1122 3343 44445789998888
Q ss_pred ECCC-----CeEEEE----cccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCCC---cEEEEecc------CcCCcCCCC
Q 016446 214 DVRN-----AELMEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG---ELVTSFED------HLLWHPDCN 275 (389)
Q Consensus 214 d~~t-----g~~~~~----l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~G---~~l~tl~g------h~~~~~~~~ 275 (389)
|+++ ++...+ +.-...+. ++.++++++.... ++|-+-|+.+ +.+.++.- ...+.+..
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g- 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG- 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-
T ss_pred ECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc-
Confidence 9887 554321 11112222 4555566555555 8888888853 23333311 11111100
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecc
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 355 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
...++|+|||++|..+...+. .+..+. ++.+.++|+.+++.++++....
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~-~~~~~~-~~~~~ViD~~t~~vv~~i~vg~----------------------------- 314 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHS-RSCLAA-AENTSSVTASVGQTSGPISNGH----------------------------- 314 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECS-SCTTSC-EEEEEEEESSSCCEEECCEEEE-----------------------------
T ss_pred ceeeEEcCCCCEEEEEecccc-Cccccc-CCCEEEEECCCCeEEEEEECCC-----------------------------
Confidence 123889999998876432000 000000 1244599999999999987653
Q ss_pred cccccCCEEEEEECCCCC-EEEEec-CCCcEEEccC
Q 016446 356 VGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 389 (389)
Q Consensus 356 ~~~~~~~V~svafSpdg~-~LaSgs-~D~tIrlW~~ 389 (389)
..+.++|+|||+ .+++.. .+++|.++|.
T Consensus 315 ------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 315 ------DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ------EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ------CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 678899999998 456666 5999999873
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-09 Score=109.50 Aligned_cols=280 Identities=11% Similarity=0.114 Sum_probs=178.4
Q ss_pred eeccEEEEEecCceEEEEecccceeeeeeecCCcc---------e-EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 11 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---------V-IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 11 ~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~---------~-v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
..+++|.+.+.++.+..+|..||+.+=........ . -+.+++ ++..|+. +..| ..+.-
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v----~~~d------g~l~a 131 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYV----GTLD------GRLIA 131 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEE----ECTT------SEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEE----EcCC------CEEEE
Confidence 34788888999999999999999998776543210 0 123333 3455555 3455 56666
Q ss_pred eEeccCCCCCcceeEeeecccC-----ce-eEEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEEEecC---C----
Q 016446 81 EYIRRGKPDSGFALFESESLKW-----PG-FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K---- 142 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~-----~~-~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~tl~~---~---- 142 (389)
.|..+|+. +|....... +. +-.. .+|++++..+. ++.|..+|+++|+++.++.. .
T Consensus 132 lD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 204 (668)
T 1kv9_A 132 LDAKTGKA-----IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALP 204 (668)
T ss_dssp EETTTCCE-----EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EECCCCCE-----eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcc
Confidence 77788887 666332110 11 1112 15776665432 68999999999999877641 1
Q ss_pred -------------------------cE-EEEEEcC-CceEEEEecCCC------------C----eeEEEEEcCCCeEEE
Q 016446 143 -------------------------HV-QEIKISP-GIMLLIFNRSSS------------H----VPLKILSIEDGTVLK 179 (389)
Q Consensus 143 -------------------------~V-~~vafS~-g~~la~~~~~s~------------d----~tiklWd~~tG~~l~ 179 (389)
.+ ..+++.| ++++..+..+.. | ..|.-+|+.||+.+-
T Consensus 205 ~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W 284 (668)
T 1kv9_A 205 YEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW 284 (668)
T ss_dssp CSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred ccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee
Confidence 01 1367874 566666532210 0 149999999999999
Q ss_pred EEeecCCce------eE-EEE-EecCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCCC-ce----------------
Q 016446 180 VFYHLLHRN------KK-VDF-IEQFNE---KLLVKQENENLQILDVRNAELMEVSRTEFM-TP---------------- 231 (389)
Q Consensus 180 tl~~~~~~~------~~-v~f-~~~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~~-~v---------------- 231 (389)
.++...+.. .. +.+ ...++. .++.++.++.+.++|.++|+++...+-... +.
T Consensus 285 ~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 285 HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTT
T ss_pred EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccc
Confidence 887421111 11 111 112343 466788999999999999998743221110 00
Q ss_pred -------------------EEEEEcCCCcEEEE------------------------------------Ec-CCeEEEEe
Q 016446 232 -------------------SAFIFLYENQLFLT------------------------------------FR-NRTVAVWN 255 (389)
Q Consensus 232 -------------------~sv~fspdg~~laS------------------------------------~s-D~tIklWd 255 (389)
..++|+|+..++.. .. +++|..||
T Consensus 365 ~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D 444 (668)
T 1kv9_A 365 RYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWD 444 (668)
T ss_dssp TCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEE
T ss_pred cccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEe
Confidence 12678887666542 12 48899999
Q ss_pred CC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 256 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 256 ~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+. |+.+-..+.+.. ++...++..|.+++.++. |+.++.||..+|+.+..++...
T Consensus 445 ~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~-----------dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 445 PVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp TTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcEEEEccCCCC------CcCceeEeCCCEEEEECC-----------cccchhhhhhcChhheEecCCC
Confidence 96 998877764433 244455667888888865 5999999999999999987654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-08 Score=96.21 Aligned_cols=256 Identities=9% Similarity=0.050 Sum_probs=159.1
Q ss_pred EEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 9 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 9 i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
+...++.|.+++.++.+..+|.++|+.+-...... ....+... .+| .|+. +..+ ..+...|..+|+.
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~-~~~-~v~v----~~~~------g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVV-SDG-LVLI----HTSN------GQLQALNEADGAV 165 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEE-ETT-EEEE----ECTT------SEEEEEETTTCCE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEE-ECC-EEEE----EcCC------CeEEEEECCCCcE
Confidence 34448889999999999999999999887766542 22222222 244 4444 3455 5666777788876
Q ss_pred CCcceeEeeecccCc------eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-c-----------E-EEEEE
Q 016446 89 DSGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-H-----------V-QEIKI 149 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~------~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-~-----------V-~~vaf 149 (389)
+|.......+ ...... +|. |..+..++.+..+|+++|+.+...... . + ....+
T Consensus 166 -----~W~~~~~~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 166 -----KWTVNLDMPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp -----EEEEECCC-----CCCCCCEEE--TTE-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred -----EEEEeCCCCceeecCCCCcEEE--CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 5553322111 123332 454 555778999999999999988766421 0 1 11122
Q ss_pred cCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc-CC
Q 016446 150 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EF 228 (389)
Q Consensus 150 S~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g-h~ 228 (389)
. +..+..++ .++.+..+|.++|+.+..... .....+. .+++.+.++..++.|..+|.++|+.+..... ..
T Consensus 238 ~-~~~v~~~~---~~g~l~~~d~~tG~~~w~~~~--~~~~~~~---~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 308 (376)
T 3q7m_A 238 V-NGVVFALA---YNGNLTALDLRSGQIMWKREL--GSVNDFI---VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH 308 (376)
T ss_dssp E-TTEEEEEC---TTSCEEEEETTTCCEEEEECC--CCEEEEE---EETTEEEEEETTCCEEEEETTTCCEEEEECTTTT
T ss_pred E-CCEEEEEe---cCcEEEEEECCCCcEEeeccC--CCCCCce---EECCEEEEEcCCCeEEEEECCCCcEEEeecccCC
Confidence 2 44555543 346899999999999987762 2333333 3478899999999999999999998766542 22
Q ss_pred CceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 229 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
..+.+.+. .++.+++...+|.+..+|.. |+++..++...... .....+ .+|+ |..++. +|.
T Consensus 309 ~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~----~~~~~~-~~~~-l~v~~~-----------~G~ 370 (376)
T 3q7m_A 309 RLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF----QTEPVA-ADGK-LLIQAK-----------DGT 370 (376)
T ss_dssp SCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB----CSCCEE-ETTE-EEEEBT-----------TSC
T ss_pred CcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc----eeCCEE-ECCE-EEEEeC-----------CCE
Confidence 22222322 24555544449999999986 99987776432221 112222 2444 454544 488
Q ss_pred EEEEe
Q 016446 308 INVSS 312 (389)
Q Consensus 308 IklWd 312 (389)
|..+|
T Consensus 371 l~~~~ 375 (376)
T 3q7m_A 371 VYSIT 375 (376)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88886
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.1e-08 Score=100.55 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=172.8
Q ss_pred eccEEEEEec-CceEEEEec-ccceeeeeeecCCcce----------EEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 12 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPDEV----------IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 12 ~~~~~a~~~~-~gtiklW~~-~tg~~l~tl~~~~~~~----------v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
.+++|.+.+. ++.+...|. +||+.+=......... -+++++ ++..|+. +..| ..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v----~~~d------g~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVK----KQAN------GHLL 128 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEE----ECTT------SEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEE----EeCC------CEEE
Confidence 4777888888 899999999 8999886654432110 123333 3455555 3345 4566
Q ss_pred EeEeccCCCCCcceeEeeeccc-----Ccee-EEEecCCCeEEEEecC-----CCeEEEEeCCCCeEEEEecC-Cc----
Q 016446 80 IEYIRRGKPDSGFALFESESLK-----WPGF-VEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD-KH---- 143 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~-----~~~~-v~Fs~pdG~~Las~s~-----D~tiklWdl~~g~~l~tl~~-~~---- 143 (389)
..|..+|+. +|...... .+.+ -... +|++++..+. |+.|..+|+++|+++.++.. ..
T Consensus 129 alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 129 ALDAKTGKI-----NWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp EEETTTCCE-----EEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEECCCCCE-----EEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 667788887 56533221 1111 1122 6777665543 89999999999999877652 11
Q ss_pred ----------------------------------E-EEEEEcC-CceEEEEecCC---------CC----eeEEEEEcCC
Q 016446 144 ----------------------------------V-QEIKISP-GIMLLIFNRSS---------SH----VPLKILSIED 174 (389)
Q Consensus 144 ----------------------------------V-~~vafS~-g~~la~~~~~s---------~d----~tiklWd~~t 174 (389)
+ ..+++.+ ..++..+.... .| ..|.-+|..|
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 1 1255653 44554443211 12 3699999999
Q ss_pred CeEEEEEeecCC------ceeE-EEEE-ecCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCC-------------Cc
Q 016446 175 GTVLKVFYHLLH------RNKK-VDFI-EQFNE---KLLVKQENENLQILDVRNAELMEVSRTEF-------------MT 230 (389)
Q Consensus 175 G~~l~tl~~~~~------~~~~-v~f~-~~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~-------------~~ 230 (389)
|+.+-.++...+ ...+ +.+. .+++. .++.++.++.+.+.|.++|+.+...+-.. .+
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 999988873211 1112 2221 12342 34557899999999999999876543211 01
Q ss_pred e--------------------------EEEEEcCCCcEEEEEc-------------------------------------
Q 016446 231 P--------------------------SAFIFLYENQLFLTFR------------------------------------- 247 (389)
Q Consensus 231 v--------------------------~sv~fspdg~~laS~s------------------------------------- 247 (389)
+ ..++|+|++.+|....
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 1 2467888877665442
Q ss_pred -CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 248 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 248 -D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
++.|..||.. |+.+-+++.... +.+..+...|.++..++. |+.|+.+|..||+++.+++-.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcC-----------CCeEEEEECCCCCEEEEEeCC
Confidence 4789999996 998877753322 233333445566666655 599999999999999998754
Q ss_pred C
Q 016446 326 N 326 (389)
Q Consensus 326 ~ 326 (389)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-09 Score=111.89 Aligned_cols=261 Identities=10% Similarity=0.056 Sum_probs=163.8
Q ss_pred EEEEecCceEEEEecccceeeeeeecCC--------------------------------------cceEEEEEEee---
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSP--------------------------------------DEVIRSLFYNK--- 54 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~--------------------------------------~~~v~sv~~sp--- 54 (389)
+.++.++|.++++-+-++++|+.+.--. ..-..-++.|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678889999998888888777532110 00011255666
Q ss_pred --CCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEec-CCCeEEEEec-----------
Q 016446 55 --NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSA----------- 120 (389)
Q Consensus 55 --dg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s----------- 120 (389)
||++|-.. ..++ ..+.+-|+.+.+++. +........|..++|.. ||++++..++
T Consensus 98 ~~DG~~lfVn---d~~~------~rVavIdl~t~~~~~---ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KYDGRFLFMN---DKAN------TRVARVRCDVMKCDA---ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEEE---ETTT------TEEEEEETTTTEEEE---EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CcCCCEEEEE---cCCC------CEEEEEECCCceEee---EEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 77766552 1233 334444555555421 11111112345678755 7888887773
Q ss_pred -------CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCC------------eeEEEEEcCCCeEEE
Q 016446 121 -------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSH------------VPLKILSIEDGTVLK 179 (389)
Q Consensus 121 -------~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d------------~tiklWd~~tG~~l~ 179 (389)
.++++-+.|.++.+.+.++. +..-..+++| +|.++.+++..++. ..|.+-|+...+
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--- 242 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--- 242 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH---
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee---
Confidence 36689999999999888776 3445668899 68888888766532 234444432211
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CeE-EEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEE
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW 254 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~t--g~~-~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklW 254 (389)
++. ++|..... +.|.+.|.++ ++. +.++.- ...+..+.|+|||+++..+. +.+|-+.
T Consensus 243 ------------~~v-~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVi 304 (595)
T 1fwx_A 243 ------------KAI-AAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVL 304 (595)
T ss_dssp ------------HHH-HHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred ------------Eec-cCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence 111 33443332 5699999998 655 444322 13567799999999887775 9999999
Q ss_pred eCC-Cc------------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC------
Q 016446 255 NFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT------ 315 (389)
Q Consensus 255 d~~-G~------------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t------ 315 (389)
|+. .+ .+.+++--.. -+.++|+||| ++-+... -|++|-.||+.+
T Consensus 305 d~~~~~~~~~~~l~~~~~v~~~v~vG~g------P~h~aF~~dG-~aY~t~~----------ldsqV~kwdi~~a~~~~~ 367 (595)
T 1fwx_A 305 DVTRFDAVFYENADPRSAVVAEPELGLG------PLHTAFDGRG-NAYTSLF----------LDSQVVKWNIEDAIRAYA 367 (595)
T ss_dssp EGGGHHHHHHSCCCGGGGEEECCBCCSC------EEEEEECTTS-EEEEEET----------TTTEEEEEEHHHHHHHHH
T ss_pred ECcccccccccccCcccceEEEcCCCCC------cceEEECCCC-eEEEEEe----------cCCcEEEEEhhHhhhhhc
Confidence 997 32 3444443233 3899999999 5555443 358999999987
Q ss_pred ----CeEEEEecCCC
Q 016446 316 ----GKCLAKINATN 326 (389)
Q Consensus 316 ----g~~l~tl~gH~ 326 (389)
.+.+.++.-|-
T Consensus 368 g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 368 GEKVDPIKDKLDVHY 382 (595)
T ss_dssp TCSCCCEEEEEECSS
T ss_pred ccccceeEEEeeccc
Confidence 56788887764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-08 Score=106.36 Aligned_cols=267 Identities=13% Similarity=0.099 Sum_probs=164.8
Q ss_pred eeeEeEeccCCCCCcceeEeeecccC------------ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC---
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKW------------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--- 141 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~------------~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--- 141 (389)
.+.-.|..+|+. +|..+.... ...+++. +++ |..++.|+.|.-+|.++|+++.+...
T Consensus 77 ~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 148 (668)
T 1kv9_A 77 RVIAVDAASGKE-----LWRYDPEVAKVKARTSCCDAVNRGVALW--GDK-VYVGTLDGRLIALDAKTGKAIWSQQTTDP 148 (668)
T ss_dssp EEEEEETTTCCE-----EEEECCCCCGGGGGGCTTCSCCCCCEEE--BTE-EEEECTTSEEEEEETTTCCEEEEEECSCT
T ss_pred eEEEEECCCChh-----ceEECCCCCccccccccccCCccceEEE--CCE-EEEEcCCCEEEEEECCCCCEeeeeccCCC
Confidence 444566678876 665331110 1234554 454 55567899999999999999876642
Q ss_pred ---CcEEE-EEEcCCceEEEEecCC---CCeeEEEEEcCCCeEEEEEeecC-C---------------------------
Q 016446 142 ---KHVQE-IKISPGIMLLIFNRSS---SHVPLKILSIEDGTVLKVFYHLL-H--------------------------- 186 (389)
Q Consensus 142 ---~~V~~-vafS~g~~la~~~~~s---~d~tiklWd~~tG~~l~tl~~~~-~--------------------------- 186 (389)
..+.+ ..+. +.+++++.... .++.|.-+|.+||+++-++.... .
T Consensus 149 ~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~ 227 (668)
T 1kv9_A 149 AKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGG 227 (668)
T ss_dssp TSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCE
T ss_pred CCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCC
Confidence 11211 1122 44554543321 25899999999999999886210 0
Q ss_pred ---ceeEEEEEecCCCeEEEEeCCC-------------------cEEEEECCCCeEEEEccc--CC-------CceEEEE
Q 016446 187 ---RNKKVDFIEQFNEKLLVKQENE-------------------NLQILDVRNAELMEVSRT--EF-------MTPSAFI 235 (389)
Q Consensus 187 ---~~~~v~f~~~~~~~l~~~s~D~-------------------tIklWd~~tg~~~~~l~g--h~-------~~v~sv~ 235 (389)
....+++. +..+.+..+..++ .|..+|.+||+.+-.++. |. ..+....
T Consensus 228 gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d 306 (668)
T 1kv9_A 228 GGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAE 306 (668)
T ss_dssp ECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEE
T ss_pred CCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEE
Confidence 01235665 4567777776665 499999999999776543 33 1222223
Q ss_pred EcCCCc---EEEEEc-CCeEEEEeCC-CcEEEEeccCc-CCcC-------------C----------------C-CeeEE
Q 016446 236 FLYENQ---LFLTFR-NRTVAVWNFR-GELVTSFEDHL-LWHP-------------D----------------C-NTNNI 279 (389)
Q Consensus 236 fspdg~---~laS~s-D~tIklWd~~-G~~l~tl~gh~-~~~~-------------~----------------~-~v~sv 279 (389)
+..||+ +++.++ +|.+.++|.. |+++...+-.. .|.. . . .=..+
T Consensus 307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 344776 677777 9999999996 99885433211 0000 0 0 00137
Q ss_pred EECCCCCEEEEEecCCC-----c-------cc--c-----------cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccc
Q 016446 280 YITSDQDLIISYCKAEP-----E-------DQ--W-----------MEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 334 (389)
Q Consensus 280 ~fSpdG~~laS~s~D~~-----~-------~~--~-----------~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~ 334 (389)
+|+|+.+++.....+-+ + .. . ....+|+|+-||+.||+.+.....+.
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-------- 458 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-------- 458 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--------
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--------
Confidence 89998777665332110 0 00 0 12245899999999999998876543
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.++...+...|..|+.|+.|+.++.||
T Consensus 459 ---------------------------~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 ---------------------------HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp ---------------------------SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ---------------------------CCcCceeEeCCCEEEEECCcccchhhh
Confidence 233345566788899999999999987
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-08 Score=93.32 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=138.1
Q ss_pred CeEEEEec-C--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCC
Q 016446 133 YTMLYSIS-D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE 208 (389)
Q Consensus 133 g~~l~tl~-~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~ 208 (389)
++.+.+++ + .....++|+|+++|..++....+.+|+..|++||+.++++.-. .+.+...+. ++++.+.... .++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~~fgeGi~-~~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DSYFGEGLT-LLNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TTCCEEEEE-EETTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CCcceEEEE-EeCCEEEEEEecCC
Confidence 44566665 2 3578999996346666643334579999999999999998722 222222332 3366776655 889
Q ss_pred cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 209 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
++-++|.++++.+.++.-.... ...++|||+.|..+. +++|.+.|.. .+.++++.--....+-...+.+.|. ||+
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999999887532111 234667877666665 8899999996 7877777621110010125788888 887
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 366 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv 366 (389)
..|.... +++|-+-|..+|+.+.++.-....+ ...............+
T Consensus 164 lyvn~~~-----------~~~V~vID~~tg~V~~~I~~~g~~~---------------------~~~~~~~~~~~v~nGI 211 (266)
T 2iwa_A 164 VWANIWQ-----------TDCIARISAKDGTLLGWILLPNLRK---------------------KLIDEGFRDIDVLNGI 211 (266)
T ss_dssp EEEEETT-----------SSEEEEEETTTCCEEEEEECHHHHH---------------------HHHHTTCTTCCCEEEE
T ss_pred EEEecCC-----------CCeEEEEECCCCcEEEEEECCCccc---------------------ccccccccccCceEEE
Confidence 6665422 4799999999999999986321000 0000000001367899
Q ss_pred EECCCCCEEEE-ecCCCcEE
Q 016446 367 FYDEERNEIYT-GNRHGLVH 385 (389)
Q Consensus 367 afSpdg~~LaS-gs~D~tIr 385 (389)
+|+|||+.|+. +....+|.
T Consensus 212 a~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 212 AWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp EEETTTTEEEEEETTCSEEE
T ss_pred EEcCCCCEEEEECCCCCeEE
Confidence 99999976554 44555543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-08 Score=94.50 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=165.8
Q ss_pred EEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 7 IEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 7 ~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
..+... +..|.++..+ +..+|. +|+.+..+.... ....+.++. +|. |.. +..+ ..+...+..
T Consensus 63 ~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~-~~~~~~~~~-~~~-l~v----~t~~------~~l~~~d~~- 125 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK-AIVSDFTIF-EDI-LYV----TSMD------GHLYAINTD- 125 (330)
T ss_dssp ECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC------CCEEEE-TTE-EEE----ECTT------SEEEEECTT-
T ss_pred cceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC-CcccCceEE-CCE-EEE----EecC------CEEEEEcCC-
Confidence 445554 5566666666 777887 687776555432 333344443 444 444 2344 445555544
Q ss_pred CCCCCcceeEeeec-ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecC
Q 016446 86 GKPDSGFALFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRS 161 (389)
Q Consensus 86 g~~~~~~~l~~~~~-~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~ 161 (389)
|+. +|.... ...+.++.++ ++|.+++ ++.++.|..+|.+ |+.+..+. ...+.++.+. +|... .+.
T Consensus 126 g~~-----~~~~~~~~~~~~~~~~~-~~g~l~v-gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t-- 194 (330)
T 3hxj_A 126 GTE-----KWRFKTKKAIYATPIVS-EDGTIYV-GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS-- 194 (330)
T ss_dssp SCE-----EEEEECSSCCCSCCEEC-TTSCEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--
T ss_pred CCE-----EEEEcCCCceeeeeEEc-CCCEEEE-EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--
Confidence 654 343221 1123446665 6887655 6778999999998 88776554 4567778886 55544 443
Q ss_pred CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
+.|..+| .+|+.+..+......+..+... + ++.+.++..++.|..+|. +|+.+..+......+.++++.++|+
T Consensus 195 ---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~-~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~ 267 (330)
T 3hxj_A 195 ---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-E-DGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT 267 (330)
T ss_dssp ---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-T-TSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC
T ss_pred ---CEEEEEC-CCCcEEEEEccCCcceeceEEC-C-CCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe
Confidence 4689999 8999888877544556666653 2 457888888888888885 6766666555555556677778898
Q ss_pred EEEEEcCCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 242 LFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 242 ~laS~sD~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+.+...++.|..+|.+|+.+..+.-... .+.++++.++|++.+. + .+|.+++-..+
T Consensus 268 l~v~t~~ggl~~~d~~g~~~~~~~~~~~-----~~~~~~~d~~g~l~~g-t-----------~~G~~~~~~~~ 323 (330)
T 3hxj_A 268 IYFGSYDGHLYAINPDGTEKWNFETGSW-----IIATPVIDENGTIYFG-T-----------RNGKFYALFNL 323 (330)
T ss_dssp EEEECTTCEEEEECTTSCEEEEEECSSC-----CCSCCEECTTCCEEEE-C-----------TTSCEEEEEC-
T ss_pred EEEecCCCCEEEECCCCcEEEEEEcCCc-----cccceEEcCCCEEEEE-c-----------CCCeEEEEecc
Confidence 8776668888899988888777654332 2678899999998885 3 35889887644
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-08 Score=93.06 Aligned_cols=194 Identities=10% Similarity=0.011 Sum_probs=140.6
Q ss_pred ceeEEEecCCCeEEEEecC--CCeEEEEeCCCCeEEEEec-C--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 103 PGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~--D~tiklWdl~~g~~l~tl~-~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
+..++|+ |||++.++.+. +++|++.|+++|+.+.++. . .....+++. |+.|..+.. .++++-++|.+|++.
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~--~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVW--LKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEET--TCSEEEEEETTTTEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEe--cCCEEEEEECCCCcE
Confidence 3569998 88988887764 6899999999999988875 2 244566776 456666643 457999999999999
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccC-----CCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh-----~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
+.+++.-.+.-+. +. ++++++.++..+++|.+.|.++.+.+.++.-. -..++.+.|. +|++.+... +++|
T Consensus 99 ~~~i~~g~~~g~g--lt-~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKDGWG--LA-TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSSCCE--EE-ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCCeEE--EE-ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 9999732122233 33 57888888777899999999998887765421 1247788888 889888887 8899
Q ss_pred EEEeCC-CcEEEEeccCc--------CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 252 AVWNFR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 252 klWd~~-G~~l~tl~gh~--------~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
-+=|.. |+.+.++.-.. ........+.|+|+|||++|..++.. .+++..-++.
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~----------~~~v~~i~l~ 236 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL----------WPKLFEIKLH 236 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT----------CSEEEEEEEE
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC----------CCeEEEEEEe
Confidence 999996 99988886210 00001125899999999888777643 3666666654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-07 Score=85.97 Aligned_cols=222 Identities=9% Similarity=0.061 Sum_probs=138.9
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
.++..++++ |+|+++++...++.|..||... +....+. ......++|. +|.. .++........|..+|..+|+..
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCE-EEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEE
Confidence 456789998 8999988888899999999754 4443343 4678999999 5664 44432221234666777888865
Q ss_pred EEEee-cCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeE-EE---------EcccCCCceEEEEEcCCCcE-EEE
Q 016446 179 KVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAEL-ME---------VSRTEFMTPSAFIFLYENQL-FLT 245 (389)
Q Consensus 179 ~tl~~-~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~-~~---------~l~gh~~~v~sv~fspdg~~-laS 245 (389)
..... .......+++. .+..++.. ..++.|...|..+++. +. ...+.....+.+ +|||+. .++
T Consensus 109 ~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 43321 11122334432 24455554 4688999999876532 11 111222345666 888864 455
Q ss_pred Ec-CCeEEEEeCC--CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 246 FR-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 246 ~s-D~tIklWd~~--G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
-. .+.|..++++ |++ ...+..-.. -..++++|||++.++... .+.|..+|. .|+...
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~~~~------P~gi~vd~dG~l~va~~~-----------~~~V~~~~~-~G~~~~ 246 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVEQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTI 246 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEE
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEeccCC------CCCeEECCCCCEEEEeCC-----------CCeEEEECC-CCCEEE
Confidence 56 8899999986 432 222221112 258999999998887533 378999995 487643
Q ss_pred E--ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC---CCCCEEEEecCC
Q 016446 321 K--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD---EERNEIYTGNRH 381 (389)
Q Consensus 321 t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS---pdg~~LaSgs~D 381 (389)
. +... ....++++|. ||+++|+-++..
T Consensus 247 ~~~~~~~----------------------------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 247 IAQAEQG----------------------------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECGGGT----------------------------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred Eeecccc----------------------------------cCCceEEEEecccCCCCEEEEECCC
Confidence 2 2211 1478999999 998888776643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-07 Score=97.52 Aligned_cols=281 Identities=11% Similarity=0.042 Sum_probs=173.6
Q ss_pred eccEEEEEec-CceEEEEec-ccceeeeeeecCCcc----------eEEEEEEeeCCCE----EEEEEEeecCCCcceee
Q 016446 12 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPDE----------VIRSLFYNKNNDS----LITVSVYASDNFSSLKC 75 (389)
Q Consensus 12 ~~~~~a~~~~-~gtiklW~~-~tg~~l~tl~~~~~~----------~v~sv~~spdg~~----l~s~s~~~~~d~~~l~~ 75 (389)
.+++|.+.+. ++.+..+|. +||+.+=........ ..+.++++|.+.. |+. +..|
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v----~t~d------ 130 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK----TQLD------ 130 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE----ECTT------
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE----EcCC------
Confidence 4777888887 899999999 899988665543211 1245777765555 655 3455
Q ss_pred eeeeEeEeccCCCCCcceeEeeeccc-----Ccee-EEEecCCCeEEEEec-----CCCeEEEEeCCCCeEEEEecC-Cc
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLK-----WPGF-VEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD-KH 143 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~-----~~~~-v~Fs~pdG~~Las~s-----~D~tiklWdl~~g~~l~tl~~-~~ 143 (389)
..+.-.|..+|++ +|...... .+.+ -... +|++++.++ .++.|+-+|+++|+++.++.. ..
T Consensus 131 g~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 131 GNVAALNAETGET-----VWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp SEEEEEETTTCCE-----EEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CEEEEEECCCCCE-----EEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 4455566678887 56533211 1111 1222 677766543 489999999999999877652 11
Q ss_pred --------------------------------------EE-EEEEc-CCceEEEEecCCC-------------CeeEEEE
Q 016446 144 --------------------------------------VQ-EIKIS-PGIMLLIFNRSSS-------------HVPLKIL 170 (389)
Q Consensus 144 --------------------------------------V~-~vafS-~g~~la~~~~~s~-------------d~tiklW 170 (389)
+| ..++. ...++..+..... ...|.-+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 12 24454 3455555432210 1479999
Q ss_pred EcCCCeEEEEEeecCCcee-------EEEEEe--cCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCC----------
Q 016446 171 SIEDGTVLKVFYHLLHRNK-------KVDFIE--QFNE---KLLVKQENENLQILDVRNAELMEVSRTEF---------- 228 (389)
Q Consensus 171 d~~tG~~l~tl~~~~~~~~-------~v~f~~--~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~---------- 228 (389)
|..||+.+-.++...+..+ .+.+.. .+++ .++.++.++.+.+.|.++|+++-..+-..
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 9999999998874322111 122221 2342 34457899999999999999876543110
Q ss_pred ---Cce--------------------------EEEEEcCCCcEEEEE---------------------------------
Q 016446 229 ---MTP--------------------------SAFIFLYENQLFLTF--------------------------------- 246 (389)
Q Consensus 229 ---~~v--------------------------~sv~fspdg~~laS~--------------------------------- 246 (389)
..+ ..++|+|+.+++...
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 011 245778877766442
Q ss_pred -------cCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 247 -------RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 247 -------sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
.++.+.-||+. |+.+-..+- ..+ +++-.++..|.++..++. |+.++.+|.+||++
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~-----~~~g~~~tagg~vf~gt~-----------dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKME-RFA-----VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDL 506 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEE-SSC-----CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecC-CCC-----ccCcceEecCCEEEEECC-----------CCeEEEEECCCCCE
Confidence 13688899996 988766542 111 122222335666776765 59999999999999
Q ss_pred EEEecCCC
Q 016446 319 LAKINATN 326 (389)
Q Consensus 319 l~tl~gH~ 326 (389)
+.+++-..
T Consensus 507 lW~~~l~~ 514 (599)
T 1w6s_A 507 LWKFKIPS 514 (599)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99886543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-07 Score=82.89 Aligned_cols=201 Identities=11% Similarity=0.017 Sum_probs=134.2
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
.++..++|++.++.+.++....+.|..+++.++.....+. + .....++|.+ ++.|..+... .+.|...++.. +.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g-~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDG-TQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTS-CS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCC-CC
Confidence 4567899983356777777788999999986555433333 2 5789999995 7777776433 46899999754 43
Q ss_pred EEEEe-ecCCceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCc-EEEEEc-CCe
Q 016446 178 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR-NRT 250 (389)
Q Consensus 178 l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~---D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~-~laS~s-D~t 250 (389)
...+. .....-..+++. |+++.|..+.. .+.|...++. |+..+.+ ......+..++++|+++ +.++-. .+.
T Consensus 113 ~~~~~~~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp CEEEECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEEECCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 33332 212345788887 55677666543 4789888885 4433333 23445789999999765 556666 889
Q ss_pred EEEEeCCCcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 251 VAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 251 IklWd~~G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
|...|.+|..+. .+.+-.. -..+++ |+..|..+... .+.|...|..+|+.+.++..
T Consensus 191 I~~~~~~g~~~~~~~~~~~~------P~gi~~--d~~~lyva~~~----------~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEGLQY------PFAVTS--YGKNLYYTDWK----------TNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEETTEEEEEEEEECCCS------EEEEEE--ETTEEEEEETT----------TTEEEEEETTTTEEEEEECC
T ss_pred EEEEecCCCceEEEecCCCC------ceEEEE--eCCEEEEEECC----------CCeEEEEeCCCCCceEEEcc
Confidence 999999854333 3332222 246665 45555555443 37999999999999999864
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.6e-06 Score=87.41 Aligned_cols=312 Identities=8% Similarity=0.030 Sum_probs=191.3
Q ss_pred EEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEec
Q 016446 6 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 6 v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~ 84 (389)
|..|... +..|-++..++-+..|+.++++............|++|+..++|...|.+ .+ ..+.+++..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-----~~------~Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-----EG------AGLFLINPK 243 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-----BS------SCEEEEETT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-----CC------CCeEEEeCC
Confidence 7777775 55566677665577888876765443222223679999999999876652 22 223444444
Q ss_pred cCCCCCcceeEeee-------cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe---------cCCcEEEEE
Q 016446 85 RGKPDSGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKHVQEIK 148 (389)
Q Consensus 85 ~g~~~~~~~l~~~~-------~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl---------~~~~V~~va 148 (389)
++++ ..+... ....+.++..+ ++|.+.+.. .+ -|.++|..+++..... ....|+++.
T Consensus 244 ~~~~----~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 316 (795)
T 4a2l_A 244 TKEI----KNYLHSPSNPKSISSNYIRSLAMD-SQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF 316 (795)
T ss_dssp TTEE----EEECCCTTCTTSCSCSBEEEEEEC-TTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE
T ss_pred CCeE----EEeecCCCCccccCCCeEEEEEEc-CCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE
Confidence 3332 011111 11335678887 789877643 44 5889998887754322 235799999
Q ss_pred EcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEee-------cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 016446 149 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 221 (389)
Q Consensus 149 fS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~-------~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~ 221 (389)
..+.+.|-++... +-|..++..+++.. .+.. ....|.++... ..+.|-+|..++-|..||.++++..
T Consensus 317 ~D~~g~lWigt~~---~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d--~~g~lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 317 MDSQGGMWLGTYF---GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVED--KDKNLWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp ECTTSCEEEEESS---SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEEC--TTSCEEEEESSSCEEEECTTTCCEE
T ss_pred EeCCcCEEEEECC---CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEEC--CCCCEEEEECCCCeEEEcCCCCcEE
Confidence 9843444455332 45888887665432 2321 11235555542 2567888888888999999988876
Q ss_pred EEccc--------CCCceEEEEEcCCCc-EEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 222 EVSRT--------EFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 222 ~~l~g--------h~~~v~sv~fspdg~-~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
..... ....|.+++..++|+ +.+...++-|.++|.+ |+.. .+.......+...|.+++..++|++.+..
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 65322 235799999999999 6665556778899987 5543 33311100111248999999999988864
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 371 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd 371 (389)
. +-|.++|..+++....... .. + .+ -....|.++..+++
T Consensus 470 ~-------------~Gl~~~~~~~~~~~~~~~~-~~-~-------~~-------------------~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 470 L-------------SALVRFNPEQRSFTTIEKE-KD-G-------TP-------------------VVSKQITTLFRDSH 508 (795)
T ss_dssp S-------------SCEEEEETTTTEEEECCBC-TT-C-------CB-------------------CCCCCEEEEEECTT
T ss_pred c-------------CceeEEeCCCCeEEEcccc-cc-c-------cc-------------------cCCceEEEEEECCC
Confidence 2 3588899888776432211 00 0 00 00147999999999
Q ss_pred CCEEEEecCCCcE
Q 016446 372 RNEIYTGNRHGLV 384 (389)
Q Consensus 372 g~~LaSgs~D~tI 384 (389)
|++.+... .|..
T Consensus 509 g~lWigt~-~Gl~ 520 (795)
T 4a2l_A 509 KRLWIGGE-EGLS 520 (795)
T ss_dssp CCEEEEES-SCEE
T ss_pred CCEEEEeC-CceE
Confidence 99888766 5543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.2e-07 Score=81.79 Aligned_cols=191 Identities=9% Similarity=0.076 Sum_probs=122.4
Q ss_pred eEEEEecCCCeEEEEeCCCCeE-------EEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~-------l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
++|..+.. +.|+.+++..... +..........+++++ ++.|..+.. ..+.|..+++.+++....+....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECCC
Confidence 44444432 4788888754432 2222235678999994 777777643 34789999987665444443222
Q ss_pred CceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc---CCeEEEEeCCCcE
Q 016446 186 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR---NRTVAVWNFRGEL 260 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s---D~tIklWd~~G~~ 260 (389)
.....+++. ++++.+..+ ...+.|.++|+...............+..+++.|+ |++.++.. .+.|...+++|+.
T Consensus 79 ~~p~~ia~d-~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALD-HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEE-ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 456788887 556666665 47789999999654433333333357899999995 66666654 3688888998776
Q ss_pred EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 261 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 261 l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
.+.+...... .-+.++|+||+++|..+... .+.|...|+..++....+
T Consensus 158 ~~~~~~~~~~----~P~gia~d~~~~~lyv~d~~----------~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 158 RRILAQDNLG----LPNGLTFDAFSSQLCWVDAG----------THRAECLNPAQPGRRKVL 205 (267)
T ss_dssp CEEEECTTCS----CEEEEEEETTTTEEEEEETT----------TTEEEEEETTEEEEEEEE
T ss_pred cEEEEECCCC----CCcEEEEcCCCCEEEEEECC----------CCEEEEEecCCCceEEEe
Confidence 5555311111 14799999998877655433 479999998754433333
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-07 Score=96.25 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=131.2
Q ss_pred CCCeE-EEEecCCCeEEEEeCCCC----eEEEEec--------CC-cEEEEEEcCCceEEEEecCCC----CeeEEEEEc
Q 016446 111 VNGKV-LTYSAQDSIYKVFDLKNY----TMLYSIS--------DK-HVQEIKISPGIMLLIFNRSSS----HVPLKILSI 172 (389)
Q Consensus 111 pdG~~-Las~s~D~tiklWdl~~g----~~l~tl~--------~~-~V~~vafS~g~~la~~~~~s~----d~tiklWd~ 172 (389)
+++++ ++++-.+++|.+.|+++- +...++. +. .=..+..+|+++. ++..++. .+.|-+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~-Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIY-ISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEE-EEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEE-EEcCCCcCCCCCCeEEEEEC
Confidence 45665 556778999999998754 5667773 21 3456788865544 4433332 268999999
Q ss_pred CCCeEEEEEeecCCc---eeEEEEEecCCCeEEEEe-------------------CCCcEEEEECCCCeEEEEcccC--C
Q 016446 173 EDGTVLKVFYHLLHR---NKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNAELMEVSRTE--F 228 (389)
Q Consensus 173 ~tG~~l~tl~~~~~~---~~~v~f~~~~~~~l~~~s-------------------~D~tIklWd~~tg~~~~~l~gh--~ 228 (389)
+|++++.+.+--.+. -..+-|+ |+...++++. .+.+|.+||+.+++.++++.-. .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999999999722122 2446667 6667677663 4899999999999988887542 2
Q ss_pred CceEEEEE--cCCCcEEEEE-------cCCeEEEEeCC-CcE--EEEe--ccC--cCCcC---------CCCeeEEEECC
Q 016446 229 MTPSAFIF--LYENQLFLTF-------RNRTVAVWNFR-GEL--VTSF--EDH--LLWHP---------DCNTNNIYITS 283 (389)
Q Consensus 229 ~~v~sv~f--spdg~~laS~-------sD~tIklWd~~-G~~--l~tl--~gh--~~~~~---------~~~v~sv~fSp 283 (389)
.....++| +|+|+++-.+ -+++|-+|..+ |+. ++.+ ... ....+ ......|.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34556656 9999875543 24588777664 532 2221 110 00000 01147899999
Q ss_pred CCCEEEEEecCCCcccccCCCCCeEEEEeCC---CCeEEEEec
Q 016446 284 DQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKIN 323 (389)
Q Consensus 284 dG~~laS~s~D~~~~~~~~s~D~tIklWd~~---tg~~l~tl~ 323 (389)
||++|-.+... .++|.++|+. +.+++..+.
T Consensus 331 DGrfLYVSnrg----------~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 331 DDKFLYLSLWG----------IGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TSCEEEEEETT----------TTEEEEEECSSTTSCEEEEEEE
T ss_pred CCCEEEEEeCC----------CCEEEEEEecCCCCcEEEEEEE
Confidence 99999998875 3899999985 245665553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-07 Score=92.88 Aligned_cols=281 Identities=14% Similarity=0.074 Sum_probs=166.7
Q ss_pred eccEEEEEecCceEEEEecccceeeeeeecCCcce--------EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 12 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEV--------IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 12 ~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~--------v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+++|.+.+.++.+..+|.+||+.+=......... -+.+++ .+..|+.+ ..| ..+.-.|.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~----t~d------g~l~AlD~ 134 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFG----TLD------ASVVALNK 134 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEE----ETT------TEEEEEES
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEE----eCC------CEEEEEEC
Confidence 46667777764448899999999887665532110 133333 34555552 344 34555666
Q ss_pred ccCCCCCcceeEeeecccC-----ce-e-EEEe-cCCCe-EEEEec------CCCeEEEEeCCCCeEEEEecCC--c---
Q 016446 84 RRGKPDSGFALFESESLKW-----PG-F-VEFD-DVNGK-VLTYSA------QDSIYKVFDLKNYTMLYSISDK--H--- 143 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~-----~~-~-v~Fs-~pdG~-~Las~s------~D~tiklWdl~~g~~l~tl~~~--~--- 143 (389)
.+|+. +|....... +. + +.+. ..+|+ .|..++ .++.|.-.|+++|+++.+.+.. .
T Consensus 135 ~TG~~-----~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p 209 (582)
T 1flg_A 135 NTGKV-----VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGR 209 (582)
T ss_dssp SSCCE-----EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEE
T ss_pred CCCCE-----EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccc
Confidence 78886 565332110 11 1 2222 01343 344443 3899999999999998766421 0
Q ss_pred -------------------------------------E-EEEEEcC-CceEEEEecC-----------CC------C---
Q 016446 144 -------------------------------------V-QEIKISP-GIMLLIFNRS-----------SS------H--- 164 (389)
Q Consensus 144 -------------------------------------V-~~vafS~-g~~la~~~~~-----------s~------d--- 164 (389)
+ ...++.| ..++..+... .. |
T Consensus 210 ~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~ 289 (582)
T 1flg_A 210 LNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLY 289 (582)
T ss_dssp ETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTT
T ss_pred ccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcc
Confidence 1 1245553 4555554421 11 2
Q ss_pred -eeEEEEEcCCCeEEEEEeecCCc------e-eEEEEEe--cCCC---eEEEEeCCCcEEEEECCCCeEEEEcccCC--C
Q 016446 165 -VPLKILSIEDGTVLKVFYHLLHR------N-KKVDFIE--QFNE---KLLVKQENENLQILDVRNAELMEVSRTEF--M 229 (389)
Q Consensus 165 -~tiklWd~~tG~~l~tl~~~~~~------~-~~v~f~~--~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~gh~--~ 229 (389)
+.|.-+|+.||+.+-.++...+. . ..+.+.. .+++ .++.++.++.+.++|.++|+.+-..+... .
T Consensus 290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 58999999999999988631111 1 1222221 2443 45568899999999999999876543321 0
Q ss_pred ce-------------------------------------------EEEEEcCCCcEEEEE--------------------
Q 016446 230 TP-------------------------------------------SAFIFLYENQLFLTF-------------------- 246 (389)
Q Consensus 230 ~v-------------------------------------------~sv~fspdg~~laS~-------------------- 246 (389)
+. ..++|+|+..++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 134667765544332
Q ss_pred -------------c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 247 -------------R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 247 -------------s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
. +++|.-||+. |+.+-....+.. +++-.+...|.+++.|+. |+.++.+
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~g~~-----------dg~l~A~ 512 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLVFTGTG-----------DGYFKAF 512 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEEEEECT-----------TSEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC------CcccceEeCCCEEEEECC-----------CCcEEEE
Confidence 2 5889999996 998866654322 122222235667777765 4999999
Q ss_pred eCCCCeEEEEecCCC
Q 016446 312 SILTGKCLAKINATN 326 (389)
Q Consensus 312 d~~tg~~l~tl~gH~ 326 (389)
|.+||+.+..++...
T Consensus 513 D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 513 DAKSGKELWKFQTGS 527 (582)
T ss_dssp ETTTCCEEEEEECSS
T ss_pred ECCCCCEEEEecCCC
Confidence 999999999987644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-06 Score=88.55 Aligned_cols=311 Identities=10% Similarity=0.038 Sum_probs=188.1
Q ss_pred EEEEEee-ccEEEEEecCceEEEEecccceeeeeeecCCcce-EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 6 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEV-IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 6 v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~-v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
|.+|... +..|-.+..+| +..|+.++++......+..... |.+++..++|+..|.. .+ ..+..++.
T Consensus 133 i~~i~~d~~g~lwi~t~~g-l~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-----~~------~Gl~~~~~ 200 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEG-LIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGT-----ST------DGLYTYSI 200 (795)
T ss_dssp CCEEEEEETTEEEEEETTE-EEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEE-----SS------SCEEEEET
T ss_pred EEEEEECCCCCEEEEECCc-eEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEE-----CC------CCEEEEeC
Confidence 6777766 44455555544 6788987666543221111123 8999999999866641 22 23444554
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe---------cCCcEEEEEEc-CCc
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKHVQEIKIS-PGI 153 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl---------~~~~V~~vafS-~g~ 153 (389)
..+++. ..........+.++..+ ++|.+.+... ++-+.++|..+++...-. ....|.++... +|.
T Consensus 201 ~~~~~~---~~~~~~~~~~i~~i~~d-~~g~lwigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 275 (795)
T 4a2l_A 201 TQKTFE---KVIPILGTKQIQAILQQ-SPTRIWVATE-GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR 275 (795)
T ss_dssp TTCCEE---ECC----CCCEEEEEEE-ETTEEEEEEB-SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC
T ss_pred CCCeEE---EecCCCCCCeeEEEEEc-CCCCEEEEEC-CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC
Confidence 555431 11000112345667776 7898877543 334888998887754322 23579999998 455
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEee-------cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~-------~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
+. ++... -|.++|..+++....... ....+.++... ..+.|-+|..++-|..+|..++........
T Consensus 276 lW-igt~~----Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 348 (795)
T 4a2l_A 276 LW-IGTFN----DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD--SQGGMWLGTYFGGLNYYHPIRNRFKNIRNI 348 (795)
T ss_dssp EE-EEESS----CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC--TTSCEEEEESSSCEEEECGGGGSSEEECCC
T ss_pred EE-EEeCC----hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe--CCcCEEEEECCCCeEEeCCCcccceEEcCC
Confidence 44 44322 488999888775543211 11345666543 256788888888899999877765433211
Q ss_pred ------CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcC---CcCCCCeeEEEECCCCC-EEEEEecCC
Q 016446 227 ------EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLL---WHPDCNTNNIYITSDQD-LIISYCKAE 295 (389)
Q Consensus 227 ------h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~---~~~~~~v~sv~fSpdG~-~laS~s~D~ 295 (389)
....|.+++..++|++.+...++-|..||.. ++...-...... ......|.+++..++|+ +.+ |+.+
T Consensus 349 ~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~- 426 (795)
T 4a2l_A 349 PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHA- 426 (795)
T ss_dssp TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EETT-
T ss_pred CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCc-
Confidence 2456999999999998886657678889987 554332211100 00112389999999999 555 4432
Q ss_pred CcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE
Q 016446 296 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 375 (389)
Q Consensus 296 ~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L 375 (389)
+-|.++|..+|+...-...... + ....|+++..+++|++.
T Consensus 427 ----------~Gl~~~d~~~~~~~~~~~~~~~----------------------------l--~~~~v~~i~~d~~g~lw 466 (795)
T 4a2l_A 427 ----------GGLSILHRNSGQVENFNQRNSQ----------------------------L--VNENVYAILPDGEGNLW 466 (795)
T ss_dssp ----------TEEEEEETTTCCEEEECTTTSC----------------------------C--SCSCEEEEEECSSSCEE
T ss_pred ----------CceeEEeCCCCcEEEeecCCCC----------------------------c--CCCeeEEEEECCCCCEE
Confidence 6799999888876433211100 0 01479999999999977
Q ss_pred EEecCCCc
Q 016446 376 YTGNRHGL 383 (389)
Q Consensus 376 aSgs~D~t 383 (389)
+... +|.
T Consensus 467 igt~-~Gl 473 (795)
T 4a2l_A 467 LGTL-SAL 473 (795)
T ss_dssp EEES-SCE
T ss_pred EEec-Cce
Confidence 7665 553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-07 Score=86.47 Aligned_cols=243 Identities=14% Similarity=0.045 Sum_probs=150.4
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEec--------------------CCcEEEEEEcC-CceEEE
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--------------------DKHVQEIKISP-GIMLLI 157 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl~--------------------~~~V~~vafS~-g~~la~ 157 (389)
+..|..++++ |+|++|.++..++.|..||..+++.. +... ......+++.+ ++.|.+
T Consensus 18 ~~~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 18 SYAPNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SSCCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3467789998 89986777888999999998766542 2211 13588999995 666666
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEee-----cCCceeEEEEEec-CCCeEEEEeC-----------------CCcEEEEE
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYH-----LLHRNKKVDFIEQ-FNEKLLVKQE-----------------NENLQILD 214 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~-----~~~~~~~v~f~~~-~~~~l~~~s~-----------------D~tIklWd 214 (389)
+... +.|..+|..+|+ +.++.. .......+++. + ++...++-.. ++.|..+|
T Consensus 97 ~d~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 97 VDCY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EETT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EECC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 6433 348888977664 333321 11234667775 5 5544444322 36788899
Q ss_pred CCCCeEEEEcccCCCceEEEEEcCCCcE-EEEEc-CCeEEEEeCCCc---EEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 215 VRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 215 ~~tg~~~~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIklWd~~G~---~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
..+++...... .......++|+|||+. .++-. .+.|..++++++ ....+.....+ ..+++.++|++.+
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP------~gi~~d~~G~l~v 244 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNP------GNIKRNADGHFWV 244 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSE------EEEEECTTSCEEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCC------CCeEECCCCCEEE
Confidence 98887644332 2345678999999984 45556 889999998742 12222211112 6899999999888
Q ss_pred EEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 369 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS 369 (389)
+........ -..+..+.|..+|. .|+.+..+....+. ....+.++++
T Consensus 245 a~~~~~~~~-~~~~~~~~v~~~d~-~G~~~~~~~~~~g~------------------------------~~~~~~~~~~- 291 (322)
T 2fp8_A 245 SSSEELDGN-MHGRVDPKGIKFDE-FGNILEVIPLPPPF------------------------------AGEHFEQIQE- 291 (322)
T ss_dssp EEEEETTSS-TTSCEEEEEEEECT-TSCEEEEEECCTTT------------------------------TTSCCCEEEE-
T ss_pred EecCccccc-ccCCCccEEEEECC-CCCEEEEEECCCCC------------------------------ccccceEEEE-
Confidence 764300000 00001256888884 69888887644310 0135677777
Q ss_pred CCCCEEEEecCCCcEEEcc
Q 016446 370 EERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 370 pdg~~LaSgs~D~tIrlW~ 388 (389)
++|+.+++....+.|..++
T Consensus 292 ~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp ETTEEEEECSSCSEEEEEE
T ss_pred eCCEEEEeecCCCceEEEe
Confidence 5777777777777776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-07 Score=89.23 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=132.2
Q ss_pred eeEEEecCCCeEEEEecCCC--eEEEEeCCCCeEEEEec-CCcE--EEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHV--QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~--tiklWdl~~g~~l~tl~-~~~V--~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
..++|+ ||.+..|.+.++ .|+..|+++|+.+.++. .... ..+++. |++|..... .++.+.++|.+|++.+
T Consensus 46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw--~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTW--KNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEES--SSSEEEEEETTTCCEE
T ss_pred ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEe--eCCEEEEEECccCcEE
Confidence 458997 689999998876 99999999999888775 3333 445554 455555533 3479999999999999
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc----CC-CceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EF-MTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g----h~-~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
.+++.. ..=+.++ ++++.|..+..+.+|.++|.++.+.+.++.- +. ..++.+.+. +|++.|... +++|-
T Consensus 121 ~ti~~~-~eG~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 121 RSFNYD-GEGWGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEECS-SCCCCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECC-CCceEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 999842 2224444 4677787776688999999999988776532 22 345567776 899998887 88999
Q ss_pred EEeCC-CcEEEEeccCcCC-------cCCCCeeEEEECCCCCEEEEEec
Q 016446 253 VWNFR-GELVTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~~-------~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+-|.. |+.+.++.-.... ..+...+.|||+|+++.|...+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99996 9998887642110 01123689999999988888654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-07 Score=87.85 Aligned_cols=208 Identities=11% Similarity=0.106 Sum_probs=136.9
Q ss_pred CeEEEEecC---CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCC
Q 016446 133 YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENE 208 (389)
Q Consensus 133 g~~l~tl~~---~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~ 208 (389)
.+.+.+++. ...+.+.|+++ +|..+........|+..|++||+.++++.-. ...+..... +++++|... -.++
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit-~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNG-YFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGIS-DWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETT-EEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEE-EETTEEEEEESSSS
T ss_pred eEEEEEecCCCCcccceEEEECC-EEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEE-EeCCEEEEEEeeCC
Confidence 345666753 45799999965 5545443333469999999999999998742 344333222 346666665 4799
Q ss_pred cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 209 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
++.++|.++++.+.++.-.. .-+. +.+||+.|..+. +++|.+.|.+ .+.+.+++--....+-..++.+.+. ||+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999876432 2233 446677666665 8889999996 8888876632111010125667776 887
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 366 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv 366 (389)
..|..-. +++|.+-|.+||+.+.++.-....+.. .. .....+.-+.+
T Consensus 184 lyan~w~-----------~~~I~vIDp~tG~V~~~Id~~~L~~~~--~~--------------------~~~~~~vlNGI 230 (262)
T 3nol_A 184 IFANVWQ-----------TNKIVRIDPETGKVTGIIDLNGILAEA--GP--------------------LPSPIDVLNGI 230 (262)
T ss_dssp EEEEETT-----------SSEEEEECTTTCBEEEEEECTTGGGGS--CS--------------------CCSSCCCEEEE
T ss_pred EEEEEcc-----------CCeEEEEECCCCcEEEEEECCcCcccc--cc--------------------ccCcCCceEEE
Confidence 6665433 379999999999999999754310000 00 00011467889
Q ss_pred EECCCCCEEEEecC
Q 016446 367 FYDEERNEIYTGNR 380 (389)
Q Consensus 367 afSpdg~~LaSgs~ 380 (389)
||+|++++|.-.+.
T Consensus 231 A~dp~~~~lfVTGK 244 (262)
T 3nol_A 231 AWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99999998887773
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-07 Score=98.78 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=147.7
Q ss_pred eEEEEEEe-eCCCEEEEEEEeecCCCcceeeeeeeEeEeccC-CCCCcceeEeeecccCceeEEEecCCCeEEEEecCC-
Q 016446 46 VIRSLFYN-KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD- 122 (389)
Q Consensus 46 ~v~sv~~s-pdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g-~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D- 122 (389)
.+.+..|| |||+.||.++...+.+ -.+++++++.+| +... ..+ . .. ..+++|+ |||+.|+..+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~-----~~~l~v~dl~~g~~~l~-~~~-~-~~---~~~~~Ws-pDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNE-----VYTIEFKRISDPSQTIA-DKV-S-GT---NGEIVWG-PDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSS-----CEEEEEEETTCTTCCCC-CCE-E-EE---CSCCEEC-SSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCc-----eEEEEEEECCCCCEeCC-ccc-c-Cc---eeeEEEe-cCCCEEEEEEECC
Confidence 67889999 9999999876654443 147888999888 6421 111 1 11 2368998 899999888766
Q ss_pred ----CeEEEEeCCCCe----EEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC--eE-EEEEe-ecCCce
Q 016446 123 ----SIYKVFDLKNYT----MLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG--TV-LKVFY-HLLHRN 188 (389)
Q Consensus 123 ----~tiklWdl~~g~----~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG--~~-l~tl~-~~~~~~ 188 (389)
..|.++++.+++ +++... .....++.+| ||++|+..+.......|.++|+.++ +. ++.+. ......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 368888987764 333333 2456789999 6888888776656678999999886 33 13343 333444
Q ss_pred eEEEEEecCCCeEEEEe-CC--C--cEEEEECCCCeEEEE-cccCCC--ceEEEEEcCCCcEEEEEc-CCeEEEE--eC-
Q 016446 189 KKVDFIEQFNEKLLVKQ-EN--E--NLQILDVRNAELMEV-SRTEFM--TPSAFIFLYENQLFLTFR-NRTVAVW--NF- 256 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s-~D--~--tIklWd~~tg~~~~~-l~gh~~--~v~sv~fspdg~~laS~s-D~tIklW--d~- 256 (389)
+++.|. +++.|+..+ .+ + .|-.+|+.++...+. +..|.. .+..+.+. ++.++++.. |+..+|| ++
T Consensus 323 ~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 323 YDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMAD 399 (751)
T ss_dssp EEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECC
T ss_pred EEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecc
Confidence 566553 377776654 43 3 555567765322222 223333 45556554 345556666 8865554 54
Q ss_pred ------C-CcEEEEeccCcCCcCCCCeeEEEE------CCCCC-EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 257 ------R-GELVTSFEDHLLWHPDCNTNNIYI------TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 257 ------~-G~~l~tl~gh~~~~~~~~v~sv~f------SpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
. |+.++.+.-... ...+.| ++|++ ++++.+.. ..-.+|.+.|+.+|+. ..|
T Consensus 400 ~~~~~~~~g~~~~~l~l~~~------~~~~~~~~~~~~~~~~~~l~~~~ss~--------~~P~~~~~~d~~~~~~-~~l 464 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEEP------IFTVHLVESQMLEYEEPTFRMEYSSL--------ATPNTWFDVSPQDHSR-TAV 464 (751)
T ss_dssp TTTSCCCTTTCCEECCCCCS------SCEEEECGGGCCCTTCSCEEEEEEET--------TEEEEEEEECTTTCCE-EEE
T ss_pred cccccccCCccceEECCCCc------eeEEEeccCcccCCCCCEEEEEEeCC--------CCCCEEEEEECCCCcE-EEE
Confidence 4 441344421110 123455 56765 44554432 2235788889888763 344
Q ss_pred c
Q 016446 323 N 323 (389)
Q Consensus 323 ~ 323 (389)
.
T Consensus 465 ~ 465 (751)
T 2xe4_A 465 K 465 (751)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-07 Score=83.35 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=135.1
Q ss_pred CeEEEEecC---CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCC
Q 016446 133 YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENE 208 (389)
Q Consensus 133 g~~l~tl~~---~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~ 208 (389)
.+.+.+++. ..+..+.|+++... .+........|+..|++||+.++++.-. ...+..... +.+++|... -.++
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~Ly-estG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~-~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLY-ESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIV-AWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEE-EEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEE-EETTEEEEEESSSS
T ss_pred eEEEEEcCCCCccccccEEEECCEEE-EECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEE-EeCCEEEEEEeeCC
Confidence 455666652 56899999986544 4433333468999999999999998743 333333222 336666664 5899
Q ss_pred cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 209 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
++.++|.++.+.+.++.-.. .-+.++ +|++.|..+. +++|.++|.+ .+.+++++-.....+-..++.+.+. +|+
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999876432 334454 5666555554 8899999996 8888877632211110124566654 787
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 366 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv 366 (389)
..|..-. +..|.+-|.++|+.+..+.-....+... + . . ....+.-+.+
T Consensus 162 lyanvw~-----------s~~I~vIDp~tG~V~~~idl~~l~~~~~---~---------------~--~-~~~~~vlNGI 209 (243)
T 3mbr_X 162 LLANVWL-----------TSRIARIDPASGKVVAWIDLQALVPDAD---A---------------L--T-DSTNDVLNGI 209 (243)
T ss_dssp EEEEETT-----------TTEEEEECTTTCBEEEEEECGGGSTTTT---S---------------C--C-CTTSSCEEEE
T ss_pred EEEEECC-----------CCeEEEEECCCCCEEEEEECCcCccccc---c---------------c--c-CCcCCceEEE
Confidence 6655422 3699999999999999987543110000 0 0 0 0011467889
Q ss_pred EECCCCCEEEEec
Q 016446 367 FYDEERNEIYTGN 379 (389)
Q Consensus 367 afSpdg~~LaSgs 379 (389)
||+|++++|.-.+
T Consensus 210 A~d~~~~~lfVTG 222 (243)
T 3mbr_X 210 AFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999988887766
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-06 Score=87.58 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=144.8
Q ss_pred ccEEEEEecCceEEEEecccc----eeeeeee------cCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 13 RDIVFALAHSGVCAAFSRETN----RRICFLN------VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg----~~l~tl~------~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
+..++.+..+.+|.+.|..+. +..+++. ......=..+..+||| .+|++.. +.+ ...+ ..+-+-|
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g--~~~-g~~~-g~v~vlD 170 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALG--NEE-GEGP-GGILMLD 170 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEE--ETT-SCSC-CEEEEEC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCC--CcC-CCCC-CeEEEEE
Confidence 456777889999999998777 7777773 1111234677889999 6666553 322 1122 3555666
Q ss_pred eccCCCCCcceeEeee--cccCceeEEEecCCCeEEEEec-------------------CCCeEEEEeCCCCeEEEEecC
Q 016446 83 IRRGKPDSGFALFESE--SLKWPGFVEFDDVNGKVLTYSA-------------------QDSIYKVFDLKNYTMLYSISD 141 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~--~~~~~~~v~Fs~pdG~~Las~s-------------------~D~tiklWdl~~g~~l~tl~~ 141 (389)
..++++.. -+... .......+-|+ |+++.+.+.. .+.+|.+||+.+++.+.++.-
T Consensus 171 ~~T~~v~~---~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 171 HYSFEPLG---KWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTTCCEEE---ECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCCCeEEE---EEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 66666521 11101 11122347888 8999888874 378999999999998888863
Q ss_pred ----CcEEEEEE--cC-CceEEEEec---CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 142 ----KHVQEIKI--SP-GIMLLIFNR---SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 142 ----~~V~~vaf--S~-g~~la~~~~---~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
..-+.|+| +| |.++.++.. ...+.+|-+|....|+.. . ++
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~-----------------------------~~ 296 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-A-----------------------------EK 296 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-E-----------------------------EE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-E-----------------------------EE
Confidence 24567777 74 666666543 012357777665444311 1 11
Q ss_pred EEECCCCeEEEEc-------ccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--C--cEEEEeccC-----------
Q 016446 212 ILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--G--ELVTSFEDH----------- 267 (389)
Q Consensus 212 lWd~~tg~~~~~l-------~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G--~~l~tl~gh----------- 267 (389)
+.|+.+.+...++ .+-...+..|.+||||++|-.+. .++|.++|+. + +++..+.-.
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 2222222111111 01123577899999999887774 8899999984 3 455544321
Q ss_pred c----CCcCCCCeeEEEECCCCCEEEEEe
Q 016446 268 L----LWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 268 ~----~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
. .+ ..+++||||++|..+.
T Consensus 377 ~~~~ggP------r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAP------QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCC------CCEEECTTSSEEEEEC
T ss_pred ccCCCCC------CEEEEcCCCCEEEEEc
Confidence 0 12 6899999999999986
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-05 Score=85.60 Aligned_cols=311 Identities=12% Similarity=0.056 Sum_probs=186.8
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeee-------------cCCcceEEEEEEeeCCCEEEEEEEeecCC
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN-------------VSPDEVIRSLFYNKNNDSLITVSVYASDN 69 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~-------------~~~~~~v~sv~~spdg~~l~s~s~~~~~d 69 (389)
..|.+|... ...|-++...+-+.+++..+++...... +-..+.|++++..++|..-+. ..+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWig-----t~~ 332 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIG-----TWG 332 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEE-----EBS
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEE-----ecC
Confidence 458888876 5667777774556678887655432211 112367999999999985544 233
Q ss_pred CcceeeeeeeEeEeccCCCCCcceeEee-------e--cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE---
Q 016446 70 FSSLKCRSTKIEYIRRGKPDSGFALFES-------E--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--- 137 (389)
Q Consensus 70 ~~~l~~~~~~l~~i~~g~~~~~~~l~~~-------~--~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~--- 137 (389)
.-+..++...+.+ ..+.. . ....+.++..+ ++|.+.+ |+.++-+..+|..+++...
T Consensus 333 ------~Gl~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~ 400 (781)
T 3v9f_A 333 ------GGINFISNAPPTF----HTWSYSPTQMNESSLSNKVVSSVCDD-GQGKLWI-GTDGGGINVFENGKRVAIYNKE 400 (781)
T ss_dssp ------SCEEEECSSCCSC----EEEC----CCCSSCCSSSCEEEEEEC-TTSCEEE-EEBSSCEEEEETTEEEEECC--
T ss_pred ------CeEEEeCCCCCcc----eeeccCccccccCCCCCcceEEEEEc-CCCCEEE-EeCCCcEEEEECCCCeEEEccC
Confidence 2233333333322 01110 0 12345678886 7888765 4545668888976655332
Q ss_pred --EecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEeCCCcEEE
Q 016446 138 --SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQI 212 (389)
Q Consensus 138 --tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl 212 (389)
.+....|+++... +|.+. ++... +-+..+|..+|+...-.. .....+.++... ..+.|.++.. +-|.+
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lW-igt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lwigt~-~Gl~~ 473 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLW-FGTYL---GNISYYNTRLKKFQIIELEKNELLDVRVFYED--KNKKIWIGTH-AGVFV 473 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEE-EEETT---EEEEEECSSSCEEEECCSTTTCCCCEEEEEEC--TTSEEEEEET-TEEEE
T ss_pred CCCCCCcceEEEEECCCCCEE-EEecc---CCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC--CCCCEEEEEC-CceEE
Confidence 2335689999988 55554 44322 468889988876543211 012345555432 2467777766 56889
Q ss_pred EECCCCeEEEEcccC-----CCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 213 LDVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 213 Wd~~tg~~~~~l~gh-----~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
+|.++++........ ...|.+++..++|++.+... +| +-.+|.++..+..+..... .+...|.+++..++|+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 474 IDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEG-FCSNTINQIYRSSKGQ 551 (781)
T ss_dssp EESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTT-CSCSCEEEEEECTTSC
T ss_pred EeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCC-CCCCeeEEEEECCCCC
Confidence 999988765543222 46799999999999998876 56 5568887555555542211 1223489999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEE
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 366 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sv 366 (389)
+.++.. .|-|..+|..+++. ..+....+.+. ..|.++
T Consensus 552 lWi~T~------------~Glv~~~d~~~~~~-~~~~~~~gl~~------------------------------~~i~~i 588 (781)
T 3v9f_A 552 MWLATG------------EGLVCFPSARNFDY-QVFQRKEGLPN------------------------------THIRAI 588 (781)
T ss_dssp EEEEET------------TEEEEESCTTTCCC-EEECGGGTCSC------------------------------CCCCEE
T ss_pred EEEEEC------------CCceEEECCCCCcE-EEccccCCCCC------------------------------ceEEEE
Confidence 888643 25548899877764 33432221100 357788
Q ss_pred EECCCCCEEEEecCCCcE
Q 016446 367 FYDEERNEIYTGNRHGLV 384 (389)
Q Consensus 367 afSpdg~~LaSgs~D~tI 384 (389)
..+++|++.+++ .+|.+
T Consensus 589 ~~d~~g~lW~~t-~~Gl~ 605 (781)
T 3v9f_A 589 SEDKNGNIWAST-NTGIS 605 (781)
T ss_dssp EECSSSCEEEEC-SSCEE
T ss_pred EECCCCCEEEEc-CCceE
Confidence 888888877765 44543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-06 Score=81.99 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=128.9
Q ss_pred eeEEEecCCCeEEEEecCC--CeEEEEeCCCCeEEEEec-CCcE--EEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSIS-DKHV--QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D--~tiklWdl~~g~~l~tl~-~~~V--~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l 178 (389)
..++|+ + +++..|.+.+ ..|+..|+++|+.+.+.. .... ..+++. +++|.... -.++.+.++|.+|++.+
T Consensus 24 qGL~~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~lt--w~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 24 EGLFYL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLT--WRNHEGFVYDLATLTPR 98 (243)
T ss_dssp EEEEEE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEE--SSSSEEEEEETTTTEEE
T ss_pred ccEEEE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEE--eeCCEEEEEECCcCcEE
Confidence 459997 4 8888888886 499999999999988775 3333 445554 45555553 33479999999999999
Q ss_pred EEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCC-----CceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 179 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----MTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 179 ~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~-----~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
.+++... .=+.++ ++++.|.++..+.+|.++|.++.+.+.+++-.. ..++.+.+. +|++.|... +..|.
T Consensus 99 ~ti~~~~-~Gwglt---~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 99 ARFRYPG-EGWALT---SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEECSS-CCCEEE---ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEeCCC-CceEEe---eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 9998432 224444 567788887678999999999998877654321 234555544 899998887 88999
Q ss_pred EEeCC-CcEEEEeccCcC--------CcCCCCeeEEEECCCCCEEEEEe
Q 016446 253 VWNFR-GELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 253 lWd~~-G~~l~tl~gh~~--------~~~~~~v~sv~fSpdG~~laS~s 292 (389)
+-|.. |+.+.++.-... .......+.||++|+++.|...+
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99996 999887762211 00122468999999988877754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-07 Score=86.38 Aligned_cols=204 Identities=12% Similarity=0.048 Sum_probs=133.1
Q ss_pred eEEEEecC---CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEE-EeCCCc
Q 016446 134 TMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENEN 209 (389)
Q Consensus 134 ~~l~tl~~---~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s~D~t 209 (389)
+.+.+++. .....+.|+++. |..+. +.++.|+..|++||+.++++ - ....+..-.. +++++|.. .-.++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~-Ly~st--G~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit-~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGH-FFEST--GHQGTLRQLSLESAQPVWME-R-LGNIFAEGLA-SDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTE-EEEEE--TTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEE-ECSSCEEEEESSSCE
T ss_pred EEEEEEcCCCccccceEEEECCE-EEEEc--CCCCEEEEEECCCCcEEeEE-C-CCCcceeEEE-EeCCEEEEEEccCCE
Confidence 44566652 468899998654 44442 44567999999999999988 2 2444442222 34555555 458999
Q ss_pred EEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 210 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 210 IklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
+.++|.++++.+.++.-- ..-+.++ +||+.|..+. +++|.+.|.+ .+.+++++--....+-..++.+.+. ||+.
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 999999999999987642 2234444 6777776666 8999999996 8888877632221111125677776 8876
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 367 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva 367 (389)
.|.... +++|.+-|.+||+.+.++.-....+. .... .....+.-+.+|
T Consensus 194 yanvw~-----------s~~I~vIDp~TG~V~~~Idl~~L~~~--~~~~-------------------~~~~~~vlNGIA 241 (268)
T 3nok_A 194 YANIWH-----------SSDVLEIDPATGTVVGVIDASALTRA--VAGQ-------------------VTNPEAVLNGIA 241 (268)
T ss_dssp EEEETT-----------CSEEEEECTTTCBEEEEEECHHHHHH--HTTT-------------------CCCTTCCEEEEE
T ss_pred EEEECC-----------CCeEEEEeCCCCcEEEEEECCCCccc--cccc-------------------ccCcCCceEEEE
Confidence 665433 37999999999999999864320000 0000 000114678899
Q ss_pred ECCCCCEEEEec
Q 016446 368 YDEERNEIYTGN 379 (389)
Q Consensus 368 fSpdg~~LaSgs 379 (389)
|+|++++|.-.+
T Consensus 242 ~dp~~~rlfVTG 253 (268)
T 3nok_A 242 VEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCCEEEEE
T ss_pred EcCCCCEEEEeC
Confidence 999987776665
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-07 Score=85.32 Aligned_cols=179 Identities=10% Similarity=0.044 Sum_probs=129.9
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-cCC-cEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDK-HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-~~~-~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl 181 (389)
..++|+ ++++..|.+.++.|+..|+++|+.+.++ ... .-..+++.+ ++|.... -.++.+.++|.+|++.++++
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~lt--w~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLT--WTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEE--SSSCEEEEEETTTTEEEEEE
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEE--ccCCEEEEEECCcCcEEEEE
Confidence 468997 5899999999999999999999976554 322 234566654 4554443 33579999999999999999
Q ss_pred eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc--CC---CceEEEEEcCCCcEEEEEc-CCeEEEEe
Q 016446 182 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EF---MTPSAFIFLYENQLFLTFR-NRTVAVWN 255 (389)
Q Consensus 182 ~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g--h~---~~v~sv~fspdg~~laS~s-D~tIklWd 255 (389)
+.- ..-+.++ ++++.|..+..+++|.++|.++.+.+.++.- +. ..++.+.|. +|++.|... +.+|-+=|
T Consensus 133 ~~~-~eGwGLt---~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 133 RYS-GEGWGLC---YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp ECS-SCCCCEE---EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred eCC-CceeEEe---cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 852 3235555 4578888877799999999999998776532 21 244666666 889998887 88999999
Q ss_pred CC-CcEEEEeccCc--------CCcCCCCeeEEEECCCCCEEEEEe
Q 016446 256 FR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 256 ~~-G~~l~tl~gh~--------~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
.. |+.+.++.-.. ....+...+.||++|+++.|...+
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 96 99988776321 011122468999999877666644
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-06 Score=78.67 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=142.0
Q ss_pred cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
+.+.+.++... .....++++|+|+.+++ ...+ ..+..++ ..|+. ...+. ....|..++|+ |
T Consensus 21 ~~~~~~~~p~~--~~pegia~~~~g~lyv~----d~~~------~~I~~~d-~~g~~---~~~~~--~~~~p~gia~~-~ 81 (306)
T 2p4o_A 21 PAKIITSFPVN--TFLENLASAPDGTIFVT----NHEV------GEIVSIT-PDGNQ---QIHAT--VEGKVSGLAFT-S 81 (306)
T ss_dssp CEEEEEEECTT--CCEEEEEECTTSCEEEE----ETTT------TEEEEEC-TTCCE---EEEEE--CSSEEEEEEEC-T
T ss_pred CceEeEeCCCC--CCcceEEECCCCCEEEE----eCCC------CeEEEEC-CCCce---EEEEe--CCCCceeEEEc-C
Confidence 45667777643 56789999999995555 1223 3444444 34443 11222 23457789998 8
Q ss_pred CCeEEEEecCCC--eEEEEeCCCCeEEE--EecC-CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeE-EEEEee--
Q 016446 112 NGKVLTYSAQDS--IYKVFDLKNYTMLY--SISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV-LKVFYH-- 183 (389)
Q Consensus 112 dG~~Las~s~D~--tiklWdl~~g~~l~--tl~~-~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~-l~tl~~-- 183 (389)
||+++++..... .|..+|..+|+... .+.. ..-..+++.++.++..+. ...+.|...|..+|+. +.....
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d--~~~g~i~~~d~~~~~~~v~~~~~~~ 159 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD--SYRGAIWLIDVVQPSGSIWLEHPML 159 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE--TTTTEEEEEETTTTEEEEEEECGGG
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEE--CCCCeEEEEeCCCCcEeEEEECCcc
Confidence 999877664432 35556777888543 2222 344567777666655553 2346788888776542 211110
Q ss_pred -------cCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC-CeE--EEEcccCCCceEEEEEcCCCcEEEEEc-CCeE
Q 016446 184 -------LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 251 (389)
Q Consensus 184 -------~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t-g~~--~~~l~gh~~~v~sv~fspdg~~laS~s-D~tI 251 (389)
....-..+ + ++++.+..+ ...++|..+|+.. |+. .+.+.. ...+..+++.|+|++.++.. .+.|
T Consensus 160 ~~~~~~~~~~~pngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 160 ARSNSESVFPAANGL--K-RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp SCSSTTCCSCSEEEE--E-EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred ccccccCCCCcCCCc--C-cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeE
Confidence 11122344 3 667777665 5789999999875 432 222211 13567789999999988887 8899
Q ss_pred EEEeCCCcEEE--EeccCcCCcCCCCeeEEEEC---CCCCEEEEEec
Q 016446 252 AVWNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYCK 293 (389)
Q Consensus 252 klWd~~G~~l~--tl~gh~~~~~~~~v~sv~fS---pdG~~laS~s~ 293 (389)
..+|.+|++.. .+..... ...+++|. ||+++|...+.
T Consensus 236 ~~~~~~G~~~~~~~~~~~~~-----~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 236 VRIAPDRSTTIIAQAEQGVI-----GSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECTTCCEEEEECGGGTCT-----TEEEEEECCSTTTTTEEEEEEC
T ss_pred EEECCCCCEEEEeecccccC-----CceEEEEecccCCCCEEEEECC
Confidence 99999898743 3332211 25899999 99887776553
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-07 Score=98.03 Aligned_cols=236 Identities=9% Similarity=0.028 Sum_probs=159.3
Q ss_pred ccEEEEEec-CceEEEEecccceeeeeeecCCcceEEEEEE-e-eCCCEEEEEEEeec---CCCcce-----eeeeeeEe
Q 016446 13 RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFY-N-KNNDSLITVSVYAS---DNFSSL-----KCRSTKIE 81 (389)
Q Consensus 13 ~~~~a~~~~-~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~-s-pdg~~l~s~s~~~~---~d~~~l-----~~~~~~l~ 81 (389)
|.++.+... +.+|.+-|+++.++.+.+.-........+++ + |+++++..+..+.. .|-..| --..+.+.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 455555544 6679999999999999443222245788888 5 99999887643211 000000 01345556
Q ss_pred EeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC--------------------------------------
Q 016446 82 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-------------------------------------- 123 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~-------------------------------------- 123 (389)
|..+.++ +|+-..-+.+..++++ |||+++.+.+.+.
T Consensus 181 D~~t~~v-----~~qI~Vgg~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 181 DADKWEV-----AWQVLVSGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp ETTTTEE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred ECCCCeE-----EEEEEeCCCccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 6565554 5654443467789998 8999988887543
Q ss_pred eEEEEeCCC--CeE-EEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe------------EEEEEeecCC
Q 016446 124 IYKVFDLKN--YTM-LYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT------------VLKVFYHLLH 186 (389)
Q Consensus 124 tiklWdl~~--g~~-l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~------------~l~tl~~~~~ 186 (389)
.|.+-|.++ ++. +.++. +....+|+|| ||+++.++. ..+.+|.+.|+.+.+ ...+++ -..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~--~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG--KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC--TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC--CCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 588999887 665 66776 5677889999 688887774 445799999998753 445544 123
Q ss_pred ceeEEEEEecCCCeEEEE-eCCCcEEEEECCC----------CeEEEEcccCCCc-----eEEEEEcCCCcEEEEEc---
Q 016446 187 RNKKVDFIEQFNEKLLVK-QENENLQILDVRN----------AELMEVSRTEFMT-----PSAFIFLYENQLFLTFR--- 247 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t----------g~~~~~l~gh~~~-----v~sv~fspdg~~laS~s--- 247 (389)
.-+-++|. ++| .+.+. -.|.+|-.||+++ .+.++.+.-|... ...++++|||++|.++.
T Consensus 332 gP~h~aF~-~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 332 GPLHTAFD-GRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CEEEEEEC-TTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CcceEEEC-CCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 45788897 666 55444 4999999999988 5677777666542 23346699999999984
Q ss_pred -CCe----------EEEEeCCCc
Q 016446 248 -NRT----------VAVWNFRGE 259 (389)
Q Consensus 248 -D~t----------IklWd~~G~ 259 (389)
|+- -.|.|++|.
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSS
T ss_pred ccccccCCCCCCCcceEEEcCCC
Confidence 432 289999843
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-06 Score=91.51 Aligned_cols=291 Identities=9% Similarity=-0.028 Sum_probs=162.5
Q ss_pred EEEEee-CCCEEEEEEEeecCCCc--ceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec-CCCe
Q 016446 49 SLFYNK-NNDSLITVSVYASDNFS--SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSI 124 (389)
Q Consensus 49 sv~~sp-dg~~l~s~s~~~~~d~~--~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-~D~t 124 (389)
++++.| +|+.++.+... .+.|. .-....+.+||..+++......+-. ....+-.++++. +||++++.|+ .+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~-~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYR-NDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECC-CTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEeccc-ccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCc
Confidence 667788 88877774322 11111 0112467789988888632222211 122222357887 8999999999 4568
Q ss_pred EEEEeCCCCeEEE--EecC-CcEEEEEEc-CCceEEEEecCC---CCeeEEEEEcCCCeEEEEEee-----cCCceeEEE
Q 016446 125 YKVFDLKNYTMLY--SISD-KHVQEIKIS-PGIMLLIFNRSS---SHVPLKILSIEDGTVLKVFYH-----LLHRNKKVD 192 (389)
Q Consensus 125 iklWdl~~g~~l~--tl~~-~~V~~vafS-~g~~la~~~~~s---~d~tiklWd~~tG~~l~tl~~-----~~~~~~~v~ 192 (389)
+.+||..+.+-.. .++. .+-.++++. +|.+++.+.... .-.++.+||..+++-... .. .........
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTTGG
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccccce
Confidence 9999998876332 2332 222345555 788887764211 115799999998764432 10 000000000
Q ss_pred EEecCCCeEEEEeC---------CCcEEEEECCCCeEEEEcccCC---------CceEEEEEc-CCCcEEEEEc-CC---
Q 016446 193 FIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEF---------MTPSAFIFL-YENQLFLTFR-NR--- 249 (389)
Q Consensus 193 f~~~~~~~l~~~s~---------D~tIklWd~~tg~~~~~l~gh~---------~~v~sv~fs-pdg~~laS~s-D~--- 249 (389)
+ ..++..++.++. ...+..||.++....+.+..+. ..-.++.|. .++++++.|+ ++
T Consensus 346 ~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 Y-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp G-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred e-ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 0 022333344543 3567899998877554433222 133566665 4899999886 53
Q ss_pred --------eEEEEeCC-CcEEEEe--ccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 250 --------TVAVWNFR-GELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 250 --------tIklWd~~-G~~l~tl--~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
.|.+||.. .+..... .-+.... -.+.++.|||++++.|+.+.....-....-.++.+||..+++.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~----~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFART----FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB----SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc----cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 78899986 5543322 1122211 1356778999999999864100000000125789999988765
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
. .+..-. .++ ....+..+.|||++|+.|+.
T Consensus 501 ~-~~~~~~--------~~R-----------------------~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 501 Y-KQNPNS--------IVR-----------------------VYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp E-ECCCCS--------SCC-----------------------CTTEEEEECTTSCEEEEECC
T ss_pred e-ecCCCC--------Ccc-----------------------ccccHhhcCCCcEEEecCCC
Confidence 3 232111 000 12234567899999999995
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-06 Score=88.68 Aligned_cols=262 Identities=11% Similarity=0.036 Sum_probs=153.5
Q ss_pred EeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEee--CCCEEEEEEEeec---CCCcceeeeeeeEeEec
Q 016446 10 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYAS---DNFSSLKCRSTKIEYIR 84 (389)
Q Consensus 10 ~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~sp--dg~~l~s~s~~~~---~d~~~l~~~~~~l~~i~ 84 (389)
...++.|.+++.|+.+..+|.+||+.+-.........-..+.-+| .+..|+.++. +. .+ ..+.-.|..
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~-~~~~~~~------g~v~a~D~~ 184 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS-GAELGVR------GAVNAFDLK 184 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB-CGGGTCC------CEEEEEETT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec-CCccCCC------CEEEEEECC
Confidence 445888999999999999999999988765542100001111222 2334444221 11 13 466667778
Q ss_pred cCCCCCcceeEeeecccCc---------------------------------------eeEEEecCCCeEEEEecC----
Q 016446 85 RGKPDSGFALFESESLKWP---------------------------------------GFVEFDDVNGKVLTYSAQ---- 121 (389)
Q Consensus 85 ~g~~~~~~~l~~~~~~~~~---------------------------------------~~v~Fs~pdG~~Las~s~---- 121 (389)
+|+. +|........ ..+++++.+|.+.+..+.
T Consensus 185 tG~~-----~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~ 259 (571)
T 2ad6_A 185 TGEL-----KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPW 259 (571)
T ss_dssp TCCE-----EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred CCcE-----EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccc
Confidence 8876 4542211100 136787334544443221
Q ss_pred -------C----CeEEEEeCCCCeEEEEecC--C------cEEEEEE---c-CCc---eEEEEecCCCCeeEEEEEcCCC
Q 016446 122 -------D----SIYKVFDLKNYTMLYSISD--K------HVQEIKI---S-PGI---MLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 122 -------D----~tiklWdl~~g~~l~tl~~--~------~V~~vaf---S-~g~---~la~~~~~s~d~tiklWd~~tG 175 (389)
| +.|.-+|+++|+.+...+. + .+.+..+ . +|+ .++.+ +.++.+...|.+||
T Consensus 260 ~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 260 NETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI---DRNGILYTLNRENG 336 (571)
T ss_dssp CGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE---CTTSEEEEEETTTC
T ss_pred cCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEe---CCCcEEEEEECCCC
Confidence 2 3699999999999876641 1 1222222 2 453 34444 33579999999999
Q ss_pred eEEEEEeecC-------------Cce--------------------------eEEEEEecCCCeEEEEe-----------
Q 016446 176 TVLKVFYHLL-------------HRN--------------------------KKVDFIEQFNEKLLVKQ----------- 205 (389)
Q Consensus 176 ~~l~tl~~~~-------------~~~--------------------------~~v~f~~~~~~~l~~~s----------- 205 (389)
+.+..++... .++ ..++|. |+.+.+.+..
T Consensus 337 ~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d-p~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 337 NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD-PESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE-TTTTEEEEEEECEEEEEEECC
T ss_pred CEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC-CCCCEEEEEchhccccccccc
Confidence 9998876321 000 234555 4445555432
Q ss_pred --------------------------CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-
Q 016446 206 --------------------------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR- 257 (389)
Q Consensus 206 --------------------------~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~- 257 (389)
.++.|..||+.+|+.+-...... .+.+..+...+.++..++ |+.+..+|..
T Consensus 416 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 416 LPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 35899999999999877654332 233333333344444566 9999999996
Q ss_pred CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 258 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 258 G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
|+++.+++-..... -..+.+.+||+.++...
T Consensus 495 G~~lw~~~~~~~~~----~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 495 GKELWNFKMPSGGI----GSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp CCEEEEEECSSCCC----SCCEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCcE----eeeEEEEECCEEEEEEE
Confidence 99998887433221 13455678998766543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-06 Score=87.16 Aligned_cols=266 Identities=8% Similarity=-0.027 Sum_probs=153.4
Q ss_pred eccEEEEEecCc-----------eEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 12 ARDIVFALAHSG-----------VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 12 ~~~~~a~~~~~g-----------tiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
.+++++.+..+. .+.+||..+++ .+..+...+.....++++.++|+.++. |+.+- ..+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~----GG~~~-----~~v 267 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDA-----KKT 267 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSST-----TCE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe----CCCCC-----Cce
Confidence 367777766443 68899988775 444444433344456888999998887 66441 257
Q ss_pred eEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec-CC-----CeEEEEeCCCCeEEEE-------ecCCcEE
Q 016446 79 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QD-----SIYKVFDLKNYTMLYS-------ISDKHVQ 145 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s-~D-----~tiklWdl~~g~~l~t-------l~~~~V~ 145 (389)
.++|..+++......+- ...+-.++++. +||++++.|+ .+ .++.+||.++.+-... +.... .
T Consensus 268 ~~yd~~t~~W~~~~~~~---~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~ 342 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQ---VARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K 342 (656)
T ss_dssp EEEEGGGTEEEECCCCS---SCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T
T ss_pred EEecCcCCceeECCCCC---ccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c
Confidence 77887766541111110 01111235554 7999999999 44 6799999988774322 11000 0
Q ss_pred EEEEc-CCceEEEEecC------CCCeeEEEEEcCCCeEEEEEeecCC---------ceeEEEEEecCCCeEEEEeCCC-
Q 016446 146 EIKIS-PGIMLLIFNRS------SSHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLVKQENE- 208 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~------s~d~tiklWd~~tG~~l~tl~~~~~---------~~~~v~f~~~~~~~l~~~s~D~- 208 (389)
..++. ++...+.+..+ .....+..||..+.+....+..+.. .-..+.|...++..+++|+.+.
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 01111 22222222111 1235789999998876655543211 1234445333455555666432
Q ss_pred ----------cEEEEECCCCeEEEEc--ccCCCce-EEEEEcCCCcEEEEEc-C-----------CeEEEEeCCCcEEEE
Q 016446 209 ----------NLQILDVRNAELMEVS--RTEFMTP-SAFIFLYENQLFLTFR-N-----------RTVAVWNFRGELVTS 263 (389)
Q Consensus 209 ----------tIklWd~~tg~~~~~l--~gh~~~v-~sv~fspdg~~laS~s-D-----------~tIklWd~~G~~l~t 263 (389)
.|.+||..+.+..+.. .-+.... .+.+..|||++++.|+ + .++.+||.....-..
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 7899999988876654 2222222 3446789999999997 5 578999986333233
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+..-. ++-.+-..+.+.|||++++.|+.
T Consensus 503 ~~~~~--~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 503 QNPNS--IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCC--CccccccHhhcCCCcEEEecCCC
Confidence 33111 11112245667899999999985
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-05 Score=74.53 Aligned_cols=195 Identities=10% Similarity=0.004 Sum_probs=124.8
Q ss_pred cCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEe---cC---CcEEEEEEcC-CceEEEEecC-----------
Q 016446 101 KWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI---SD---KHVQEIKISP-GIMLLIFNRS----------- 161 (389)
Q Consensus 101 ~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl---~~---~~V~~vafS~-g~~la~~~~~----------- 161 (389)
..|..++|+ | +|+++++... +.|..+|..+++..... .+ .....+++.+ .+.|..+...
T Consensus 80 ~~p~gi~~~-~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYN-LQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEE-TTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEc-CCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 357789998 6 7887776444 44888898766532111 11 3578899997 5555555432
Q ss_pred ----CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCC---eEEEEcccCCCceEE
Q 016446 162 ----SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNA---ELMEVSRTEFMTPSA 233 (389)
Q Consensus 162 ----s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg---~~~~~l~gh~~~v~s 233 (389)
..++.|..+|..+|+....... ...-..+++. +++..|..+ ..++.|..+++.++ +. +.+..... +..
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~~~~g-P~g 233 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLVKIPN-PGN 233 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEEECSS-EEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccC-CccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEEeCCC-CCC
Confidence 1236788899888876544332 2344678887 667766665 57799999998752 22 22111222 788
Q ss_pred EEEcCCCcEEEEEcC-----------CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 234 FIFLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 234 v~fspdg~~laS~sD-----------~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
+++.++|++.++... +.|..+|.+|+.+..+....... ...+.++++ ++|++.++...
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~-~~g~L~v~~~~--------- 302 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQE-HDGLLYIGTLF--------- 302 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEE-ETTEEEEECSS---------
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEE-eCCEEEEeecC---------
Confidence 999999998887643 56778888899988886543210 012467777 57776666432
Q ss_pred CCCCeEEEEeCC
Q 016446 303 GSAGSINVSSIL 314 (389)
Q Consensus 303 s~D~tIklWd~~ 314 (389)
.+.|..+++.
T Consensus 303 --~~~i~~~~~~ 312 (322)
T 2fp8_A 303 --HGSVGILVYD 312 (322)
T ss_dssp --CSEEEEEEC-
T ss_pred --CCceEEEecc
Confidence 3688888864
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00026 Score=75.74 Aligned_cols=321 Identities=13% Similarity=0.026 Sum_probs=187.3
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeeec------CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~~------~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
..|..|... ...|-++..+ -+.+|+..+++....... -....|++++..++|...+. ... .
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-----t~~------~ 278 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA-----TEL------N 278 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEE-----ESS------S
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEE-----eCC------C
Confidence 457777776 3445555555 467889876665432211 11367999999999986654 232 2
Q ss_pred eeeEeEeccCCCCCcce-eEe---e------ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE--------
Q 016446 77 STKIEYIRRGKPDSGFA-LFE---S------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------- 138 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~-l~~---~------~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t-------- 138 (389)
-+.+.+...+++..... .|. . -....+.++..+ ++|.+.+ |..++-|..++..++....-
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 356 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMN 356 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCC
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCCEEE-EecCCeEEEeCCCCCcceeeccCccccc
Confidence 23344444443210000 000 0 011235678886 7887665 55667788888766553221
Q ss_pred ---ecCCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEE---eecCCceeEEEEEecCCCeEEEEeCCCcEEE
Q 016446 139 ---ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQI 212 (389)
Q Consensus 139 ---l~~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl---~~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl 212 (389)
+....|.++...+.+.|-++..+ +-|.++|..+++...-. ......+.++... ..+.|-++..++-|..
T Consensus 357 ~~~l~~~~v~~i~~d~~g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lWigt~~~Gl~~ 431 (781)
T 3v9f_A 357 ESSLSNKVVSSVCDDGQGKLWIGTDG---GGINVFENGKRVAIYNKENRELLSNSVLCSLKD--SEGNLWFGTYLGNISY 431 (781)
T ss_dssp SSCCSSSCEEEEEECTTSCEEEEEBS---SCEEEEETTEEEEECC-----CCCSBEEEEEEC--TTSCEEEEETTEEEEE
T ss_pred cCCCCCcceEEEEEcCCCCEEEEeCC---CcEEEEECCCCeEEEccCCCCCCCcceEEEEEC--CCCCEEEEeccCCEEE
Confidence 12357999999843334444322 34888897765433211 1112345555542 2567777888778999
Q ss_pred EECCCCeEEEEcc--cCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEE
Q 016446 213 LDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 289 (389)
Q Consensus 213 Wd~~tg~~~~~l~--gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~la 289 (389)
+|.++++...... -....|.+++..++|++.+... +-+..+|.. ++...-............|.+++..++|++.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 510 (781)
T 3v9f_A 432 YNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI 510 (781)
T ss_dssp ECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE
T ss_pred EcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE
Confidence 9999888765432 2456899999999999888766 557788886 55433221110000112389999999999988
Q ss_pred EEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC
Q 016446 290 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 369 (389)
Q Consensus 290 S~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS 369 (389)
.... +-|..+|..+++.. .+...... ....|.++..+
T Consensus 511 gt~~------------~Gl~~~~~~~~~~~-~~~~~~~l------------------------------~~~~i~~i~~d 547 (781)
T 3v9f_A 511 GTFG------------GGVGIYTPDMQLVR-KFNQYEGF------------------------------CSNTINQIYRS 547 (781)
T ss_dssp EESS------------SCEEEECTTCCEEE-EECTTTTC------------------------------SCSCEEEEEEC
T ss_pred EEcC------------CCEEEEeCCCCeEE-EccCCCCC------------------------------CCCeeEEEEEC
Confidence 6431 34677997766543 34321100 01479999999
Q ss_pred CCCCEEEEecCCCcEEEcc
Q 016446 370 EERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 370 pdg~~LaSgs~D~tIrlW~ 388 (389)
++|++.++.. +|.|..+|
T Consensus 548 ~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 548 SKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp TTSCEEEEET-TEEEEESC
T ss_pred CCCCEEEEEC-CCceEEEC
Confidence 9999887766 66644443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=9.9e-06 Score=85.49 Aligned_cols=217 Identities=12% Similarity=0.010 Sum_probs=130.9
Q ss_pred eEEEecCCCe---EEEEecCCCeEEEEeCCCCeEEEEecC-C-----cEEE-EEEcCCceEEEEecCC---CCeeEEEEE
Q 016446 105 FVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQE-IKISPGIMLLIFNRSS---SHVPLKILS 171 (389)
Q Consensus 105 ~v~Fs~pdG~---~Las~s~D~tiklWdl~~g~~l~tl~~-~-----~V~~-vafS~g~~la~~~~~s---~d~tiklWd 171 (389)
.+++++.+|+ .|..++.|+.+.-.|.++|+++..... . .+.+ -.+.+| ++.+++... .++.|+-+|
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEE
Confidence 4677522343 155577899999999999998866531 1 2221 122234 454443211 368999999
Q ss_pred cCCCeEEEEEeecCCc-------------------------------------ee-EEEEEecCCCeEEEEeCC------
Q 016446 172 IEDGTVLKVFYHLLHR-------------------------------------NK-KVDFIEQFNEKLLVKQEN------ 207 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~-------------------------------------~~-~v~f~~~~~~~l~~~s~D------ 207 (389)
.+||+++-++...... ++ ..++. +..+.+..+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccC
Confidence 9999999888632111 01 22333 345666666544
Q ss_pred ----------CcEEEEECCCCeEEEEccc--CCC-------ceEEEEEc-CCC---cEEEEEc-CCeEEEEeCC-CcEEE
Q 016446 208 ----------ENLQILDVRNAELMEVSRT--EFM-------TPSAFIFL-YEN---QLFLTFR-NRTVAVWNFR-GELVT 262 (389)
Q Consensus 208 ----------~tIklWd~~tg~~~~~l~g--h~~-------~v~sv~fs-pdg---~~laS~s-D~tIklWd~~-G~~l~ 262 (389)
.+|.-+|.+||+.+-.++. |.. ...-+... .+| ++++.++ +|.+.+.|.+ |+++.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 4899999999999765543 321 11112222 578 5777777 9999999996 99886
Q ss_pred EeccCc-------------CCcC--------C-------------CCeeEEEECCCCCEEEEEecCCCc-----------
Q 016446 263 SFEDHL-------------LWHP--------D-------------CNTNNIYITSDQDLIISYCKAEPE----------- 297 (389)
Q Consensus 263 tl~gh~-------------~~~~--------~-------------~~v~sv~fSpdG~~laS~s~D~~~----------- 297 (389)
..+-.. .++. . ..=.+++|+|+.+++.....+-+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 654110 0000 0 000367899998888775432100
Q ss_pred cc--c------c---CC------CCCeEEEEeCCCCeEEEEec
Q 016446 298 DQ--W------M---EG------SAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 298 ~~--~------~---~s------~D~tIklWd~~tg~~l~tl~ 323 (389)
.+ + . .+ .+|.|.-||+.||+.+...+
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~ 470 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM 470 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec
Confidence 00 0 0 12 45899999999999988775
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.2e-06 Score=85.63 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=108.1
Q ss_pred eeEeEeccCCCCCcceeEeeecccC----------ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-C----
Q 016446 78 TKIEYIRRGKPDSGFALFESESLKW----------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K---- 142 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~~~~~~~----------~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~---- 142 (389)
+.-.|..+|+. +|..+.... ...+++. +++ |..++.|+.+.-.|+++|+++..... .
T Consensus 80 v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~g~a~~--~~~-v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~ 151 (582)
T 1flg_A 80 LFALDAKTGKR-----LWTYNHRLPDDIRPCCDVVNRGAAIY--GDK-VFFGTLDASVVALNKNTGKVVWKKKFADHGAG 151 (582)
T ss_dssp EEEEESSSCCE-----EEEEECCCCTTCCCSSCSCCCCCEEE--TTE-EEEEETTTEEEEEESSSCCEEEEEECSCGGGT
T ss_pred EEEEECCCCcE-----EEEEcCCCCcccccccccCCCccEEE--CCE-EEEEeCCCEEEEEECCCCCEEeeecCCCCCcC
Confidence 44456678876 666332211 1234553 455 44467899999999999998866541 1
Q ss_pred -cEE-EEEEcCC----c-eEEEEecC---CCCeeEEEEEcCCCeEEEEEeecCCc-------------------------
Q 016446 143 -HVQ-EIKISPG----I-MLLIFNRS---SSHVPLKILSIEDGTVLKVFYHLLHR------------------------- 187 (389)
Q Consensus 143 -~V~-~vafS~g----~-~la~~~~~---s~d~tiklWd~~tG~~l~tl~~~~~~------------------------- 187 (389)
.+. +-.+.++ + ++.++... +.++.|.-+|.+||+++-+.......
T Consensus 152 ~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~ 231 (582)
T 1flg_A 152 YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRN 231 (582)
T ss_dssp CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTT
T ss_pred cccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccc
Confidence 121 1122222 2 45444321 13679999999999999876531000
Q ss_pred ---------------e-eEEEEEecCCCeEEEEeC--------------------C----CcEEEEECCCCeEEEEcc--
Q 016446 188 ---------------N-KKVDFIEQFNEKLLVKQE--------------------N----ENLQILDVRNAELMEVSR-- 225 (389)
Q Consensus 188 ---------------~-~~v~f~~~~~~~l~~~s~--------------------D----~tIklWd~~tg~~~~~l~-- 225 (389)
+ ...++. +..+.+..+.. | +.|.-+|.+||+.+-.++
T Consensus 232 ~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~ 310 (582)
T 1flg_A 232 SPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT 310 (582)
T ss_dssp STTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS
T ss_pred cccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC
Confidence 0 123333 34466665542 3 689999999999977653
Q ss_pred cCCC-------ceEEEEEc-CCCc---EEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 226 TEFM-------TPSAFIFL-YENQ---LFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 226 gh~~-------~v~sv~fs-pdg~---~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
.|.. ...-+... .+|+ +++.++ +|.+.++|.+ |+++...+-
T Consensus 311 ~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 311 PNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp TTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 3421 11112222 5784 777887 9999999996 998876543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-07 Score=96.78 Aligned_cols=153 Identities=9% Similarity=-0.038 Sum_probs=97.2
Q ss_pred ceeEEEecCCCeEEEEecC-----CCeEEEEeCCCC-eEEE-EecCCcEEEEEEc-CCceEEEEecCCC--CeeEEEEEc
Q 016446 103 PGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNY-TMLY-SISDKHVQEIKIS-PGIMLLIFNRSSS--HVPLKILSI 172 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~-----D~tiklWdl~~g-~~l~-tl~~~~V~~vafS-~g~~la~~~~~s~--d~tiklWd~ 172 (389)
..+.+||+|||++||.+.. ..+|+++|+.+| +.+. .+. ....+++|| ||+.|+....+.. ...|.++++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4568996479999995432 347999999999 6321 111 113468899 6778877654322 146888999
Q ss_pred CCCeEE--EEEee-cCCceeEEEEEecCCCeEEEEe---CCCcEEEEECCCC--eE--EEEcccCCCceEEEEEcCCCcE
Q 016446 173 EDGTVL--KVFYH-LLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQL 242 (389)
Q Consensus 173 ~tG~~l--~tl~~-~~~~~~~v~f~~~~~~~l~~~s---~D~tIklWd~~tg--~~--~~~l~gh~~~v~sv~fspdg~~ 242 (389)
.+++.. ..+.. .......+.++ ||+.+|+..+ ....|.++|+.++ +. .....+.....+++.|+.++++
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 887532 22321 12334567787 7888888765 4457888999886 34 4444555666777777777777
Q ss_pred EEEEc-C--CeEEE--EeCC
Q 016446 243 FLTFR-N--RTVAV--WNFR 257 (389)
Q Consensus 243 laS~s-D--~tIkl--Wd~~ 257 (389)
++... | +.-+| +|+.
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp EEEECTTTCTTCEEEEEETT
T ss_pred EEEeCCCCCCCcEEEEEcCC
Confidence 66665 5 34444 5555
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.9e-05 Score=78.21 Aligned_cols=254 Identities=9% Similarity=0.077 Sum_probs=148.2
Q ss_pred ccCceeEEEecC--CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCC--CeeEEEEEcC
Q 016446 100 LKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSS--HVPLKILSIE 173 (389)
Q Consensus 100 ~~~~~~v~Fs~p--dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~--d~tiklWd~~ 173 (389)
+..|..|+|+ | +|.+.++-. .+.|+.+|+++++...... ...-..|+|+ +|++|.++...+. ...+...+ .
T Consensus 136 ~~~P~~lavd-p~~~g~Lyv~d~-~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 136 FGGAVWLSFD-PKNHNHLYLVGE-QHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CSCCCEEEEE-TTEEEEEEEEEB-TEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCCCCEEEEC-CCCCCeEEEEeC-CCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-C
Confidence 5678899998 6 355555433 3899999997777544444 4578899999 6776666654321 12333333 4
Q ss_pred CCeEE--EEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCc-EEEEEc-
Q 016446 174 DGTVL--KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR- 247 (389)
Q Consensus 174 tG~~l--~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~-~laS~s- 247 (389)
.|... ..+.. ..+...+++. |+++.|..+ ..++.|..+|..+++..... .+.....+.++|+|+|+ ++++-.
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CCceeeeeeecc-CCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 44333 34432 3455778876 545555555 47899999999888763332 22235688999999999 566666
Q ss_pred CCeEEEEeCCC---cE--EEEeccCc---CCcC-------CCCee-EEEEC--------CCCCEEEEEecCCCcccccCC
Q 016446 248 NRTVAVWNFRG---EL--VTSFEDHL---LWHP-------DCNTN-NIYIT--------SDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 248 D~tIklWd~~G---~~--l~tl~gh~---~~~~-------~~~v~-sv~fS--------pdG~~laS~s~D~~~~~~~~s 303 (389)
.+.|..++.+| ++ +.++.+.. .... ...-. .+++. ++|.+.++-..
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~---------- 360 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE---------- 360 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG----------
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC----------
Confidence 88999988764 22 33444321 1000 00012 45553 55777776433
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC-CCCEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHG 382 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-dg~~LaSgs~D~ 382 (389)
.+.|+.+| .+|+. .++-|... .+.....+|.. .....+..-+.|+++| +|.++++-....
T Consensus 361 -n~~I~~i~-~~G~v-~~~~g~g~--~~~~G~~dG~~--------------~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 361 -NHCIRILT-PQGRV-TTFAGRGS--NGTSGYNDGDL--------------RQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp -GTEEEEEC-TTSEE-EEEEECCT--TSSSSCBCEET--------------TTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred -CcEEEEEC-CCCcE-EEEEeCCC--CCCCcccCCCc--------------hhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 37899999 66854 44443210 00000000000 0011134678999999 577777766677
Q ss_pred cEEEc
Q 016446 383 LVHVW 387 (389)
Q Consensus 383 tIrlW 387 (389)
.||..
T Consensus 422 rIr~i 426 (430)
T 3tc9_A 422 RIRKI 426 (430)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77754
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-05 Score=76.56 Aligned_cols=255 Identities=11% Similarity=0.112 Sum_probs=149.7
Q ss_pred cccCceeEEEecCC---CeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCC-C-eeEEEEE
Q 016446 99 SLKWPGFVEFDDVN---GKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSS-H-VPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pd---G~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~-d-~tiklWd 171 (389)
.+..|..|+|+ |+ |.+.++-.. +.|+.+|+++++...... ......|+|+ +|. |..+...+. + ..+...+
T Consensus 137 ~~~~P~gvavd-~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 137 AFDNIWRMMFD-PNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCSCCCEEEEC-TTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred ccCCCceEEEc-cccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 45678899998 64 777666544 899999998888655444 3568999999 566 555543221 1 1122223
Q ss_pred cCCCeE-EEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEc-c-cCCCceEEEEEcCCCc-EEEEE
Q 016446 172 IEDGTV-LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS-R-TEFMTPSAFIFLYENQ-LFLTF 246 (389)
Q Consensus 172 ~~tG~~-l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l-~-gh~~~v~sv~fspdg~-~laS~ 246 (389)
...+.. ...+. ....-..+++. +.++.|..+ ..++.|+.+|..+|+....+ . +.......++|+|+|+ +.++-
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222211 01222 12344567775 434555555 47889999999988773332 1 2223445799999998 66666
Q ss_pred c-CCeEEEEeCC---CcE--EEEeccCc---CCc-------CCCCeeEEEE---------CCCCCEEEEEecCCCccccc
Q 016446 247 R-NRTVAVWNFR---GEL--VTSFEDHL---LWH-------PDCNTNNIYI---------TSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 247 s-D~tIklWd~~---G~~--l~tl~gh~---~~~-------~~~~v~sv~f---------SpdG~~laS~s~D~~~~~~~ 301 (389)
. .+.|...+.+ +++ ..++.|.. ... ....-..++| .++|.+.++-+.
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-------- 363 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-------- 363 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT--------
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC--------
Confidence 6 8899998875 332 23444431 000 0001257999 888988887432
Q ss_pred CCCCCeEEEEeCCCCeEEEEecCCCCC-CCcccccCCCCCCCccccccccceecccccccCCEEEEEEC-CCCCEEEEec
Q 016446 302 EGSAGSINVSSILTGKCLAKINATNCS-PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGN 379 (389)
Q Consensus 302 ~s~D~tIklWd~~tg~~l~tl~gH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS-pdg~~LaSgs 379 (389)
.+.|+.++ .+|+ +.++-|.... ..+ ..+|. +- ....+..-+.|+++ ++|.++++=.
T Consensus 364 ---n~~I~~~~-~~G~-v~t~~G~g~~~~~G---~~dG~------~~--------~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 364 ---SHTVRVLT-PEGR-VTTYAGRGNSREWG---YVDGE------LR--------SQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp ---TTEEEEEC-TTSE-EEEEECCCTTCSSC---CBCEE------TT--------TTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ---CCEEEEEC-CCCC-EEEEEeCCCCCccc---cCCCc------cc--------cccEeCCCcEEEEECCCCEEEEEeC
Confidence 37899999 5785 4455543200 000 00000 00 00113567899999 7888777777
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
..+.||..+
T Consensus 422 ~n~rIr~i~ 430 (433)
T 4hw6_A 422 DNHRVRKIA 430 (433)
T ss_dssp GGTEEEEEE
T ss_pred CCCEEEEEe
Confidence 777887643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00012 Score=72.49 Aligned_cols=207 Identities=13% Similarity=0.144 Sum_probs=136.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
.+..+..++|++.++++..+-...+.|+.+++..+.....+. + .....+++. .++.|..+. ...+.|.+.++..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d--~~~~~I~~~~~dg- 190 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLDG- 190 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE--TTTTEEEECBTTS-
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc--CCCCeEEEEeCCC-
Confidence 455678899985577888888888999999986655433333 2 355788998 466666653 3346888888764
Q ss_pred eEEEEE-eecCCceeEEEEEecCCCeEEEEe-CC-CcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-CCe
Q 016446 176 TVLKVF-YHLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 250 (389)
Q Consensus 176 ~~l~tl-~~~~~~~~~v~f~~~~~~~l~~~s-~D-~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D~t 250 (389)
....++ ......-..+++. |.++.|..+. .+ +.|...++...............+..++|+|+ +++..+-+ .+.
T Consensus 191 ~~~~~l~~~~l~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 191 AHRKVLLWQSLEKPRAIALH-PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEeecCCCCCCcEEEEE-cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence 433333 3333455788887 5567666654 44 78999998654444444455667899999975 55555656 889
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|...|++|...+++-.....+ -..+++ ..+.+.++-. ..+.|...|..+|+.++++...
T Consensus 270 I~~~d~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~-----------~~~~V~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 270 IERANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDW-----------HTKSINSANKFTGKNQEIIRNK 328 (386)
T ss_dssp EEEECTTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEET-----------TTTEEEEEETTTCCSCEEEECS
T ss_pred EEEEeCCCCeeEEEEECCCCC----ceEEEE-ECCEEEEeeC-----------CCCeEEEEECCCCcceEEEccC
Confidence 999999875444443212222 368888 4455555532 2478999997789888888654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00025 Score=71.29 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=141.5
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
+..|.++...+.|+.++.+ +..+.++... ...-+.|+|+|+|++|..+...++ . +...-++..+.|.+....
T Consensus 149 ~g~Lyv~d~~~~I~~id~~-~~~v~~~~~~-~~~P~~ia~d~~G~~lyvad~~~~-~-----~~~~v~~~~~~g~~~~~~ 220 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFE-KEYVSTVYSG-LSKVRTICWTHEADSMIITNDQNN-N-----DRPNNYILTRESGFKVIT 220 (430)
T ss_dssp EEEEEEEEBTEEEEEEETT-TTEEEEEECC-CSCEEEEEECTTSSEEEEEECCSC-T-----TSEEEEEEEGGGTSCSEE
T ss_pred CCeEEEEeCCCcEEEEECC-CCEEEEEecC-CCCcceEEEeCCCCEEEEEeCCCC-c-----ccceEEEEeCCCceeeee
Confidence 3556666666889999997 4445555543 367899999999996666432111 1 112223344666652111
Q ss_pred eeEeeecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEE--EEecC-CcEEEEEEc-CCceEEEEecCCCCeeE
Q 016446 93 ALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTML--YSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPL 167 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l--~tl~~-~~V~~vafS-~g~~la~~~~~s~d~ti 167 (389)
.+ ..+.+|..++++ | +|.++++-..++.|..++..+++.. ..+.. .+-..++|+ +|.+|..+.. ..+.|
T Consensus 221 ~l---~~~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~--~~~~I 294 (430)
T 3tc9_A 221 EL---TKGQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV--NQHYI 294 (430)
T ss_dssp EE---EECSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEE
T ss_pred ee---ccCCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--CCCEE
Confidence 22 246688899998 7 8998888878899999999777642 22322 456789999 5776766643 34688
Q ss_pred EEEEcC--CCeE--EEEEeecCC---------------cee-EEEEEec------CCCeEEEE-eCCCcEEEEECCCCeE
Q 016446 168 KILSIE--DGTV--LKVFYHLLH---------------RNK-KVDFIEQ------FNEKLLVK-QENENLQILDVRNAEL 220 (389)
Q Consensus 168 klWd~~--tG~~--l~tl~~~~~---------------~~~-~v~f~~~------~~~~l~~~-s~D~tIklWd~~tg~~ 220 (389)
..++.. +|+. +.++.+..+ .-. .++.... ..+.|..+ ...+.|+.+| .+|+.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 887754 3443 334433200 001 2222210 12344444 4778999999 46765
Q ss_pred EEEcc-------c----------CCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCC
Q 016446 221 MEVSR-------T----------EFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 221 ~~~l~-------g----------h~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~ 257 (389)
..... | ....++.|++.| +|.++++-. .+.|+..+++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 44321 1 133799999999 688888877 7788876653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00019 Score=69.99 Aligned_cols=207 Identities=13% Similarity=0.134 Sum_probs=135.9
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
.+..+..++|++.++.+..+-...+.|+.+++..+.....+. + .....+|+. .++.|..+. ...+.|.+.++..
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG- 147 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLDG- 147 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS-
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc--CCCCeEEEEcCCC-
Confidence 445677899986677888888888999999986655333333 2 456789998 466666653 3346899999764
Q ss_pred eEEEEEe-ecCCceeEEEEEecCCCeEEEEe-CC-CcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-CCe
Q 016446 176 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 250 (389)
Q Consensus 176 ~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s-~D-~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D~t 250 (389)
+...++. .....-..+++. |.++.|..+. .+ +.|...++............-..+..++|+|+ +++..+-+ .+.
T Consensus 148 ~~~~~l~~~~l~~P~~iavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALH-PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEe-cCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 4344433 333455788887 5566666654 44 88999998644333333445567899999975 55555656 889
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|...|++|...+++-.....+ -..+++ .++.+.++- . ..+.|...|-.+|+.+.++...
T Consensus 227 I~~~~~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td-~----------~~~~V~~~~~~~G~~~~~i~~~ 285 (349)
T 3v64_C 227 IERANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTD-W----------HTKSINSANKFTGKNQEIIRNK 285 (349)
T ss_dssp EEEEETTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEE-T----------TTTEEEEEETTTCCSCEEEECS
T ss_pred EEEEeCCCCceEEEEeCCCCC----ceEEEE-ECCEEEEec-C----------CCCeEEEEEccCCCccEEeccC
Confidence 999999876544433211222 367888 345555543 2 2478888887789888887643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00029 Score=68.64 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=120.7
Q ss_pred CCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 122 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
...|+.-++...+....+. .....+++|. .++.|..+. ...+.|+.+++.++.....+.........+++. +.++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd-~~~g 128 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVSTGLESPGGLAVD-WVHD 128 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE-TTTT
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEe--ccCCceEEEecCCCCceEEEeCCCCCccEEEEe-cCCC
Confidence 4567778875555444444 3568899999 567776663 334789999987765444443223444678876 4466
Q ss_pred eEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-C-CeEEEEeCCCcEEEEeccCcCCcCCCC
Q 016446 200 KLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWHPDCN 275 (389)
Q Consensus 200 ~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D-~tIklWd~~G~~l~tl~gh~~~~~~~~ 275 (389)
.|..+ ...+.|.+.++........+......+..+++.| +|.++.+-. . +.|...+++|....++-......
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---- 204 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW---- 204 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC----
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC----
Confidence 66555 5778999999975554444455556889999998 566666766 6 88999999887666653221111
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
-+.++|+|+++.|--+-. ..+.|...|+. |....+
T Consensus 205 PnGla~d~~~~~lY~aD~----------~~~~I~~~~~d-G~~~~~ 239 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDA----------KHHVIERANLD-GSHRKA 239 (349)
T ss_dssp EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEE
T ss_pred cceEEEeCCCCEEEEEEC----------CCCEEEEEeCC-CCceEE
Confidence 379999998777765533 24789999965 544333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00014 Score=71.99 Aligned_cols=190 Identities=11% Similarity=0.068 Sum_probs=124.7
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 188 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~ 188 (389)
+++-+|.+ ....|+..++..++....+. .....+++|. .++.|..+. ...+.|+.+++.++.....+.......
T Consensus 86 ~~~~l~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 86 PEPVLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp SCCEEEEE--CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred ccceeEee--cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEe--CCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 44444433 34678888987666544444 3578899999 577776664 334789999987765444444223344
Q ss_pred eEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-C-CeEEEEeCCCcEEEEe
Q 016446 189 KKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSF 264 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D-~tIklWd~~G~~l~tl 264 (389)
..+++. +.++.|... ...+.|.+.++........+......+..+++.|+ |.++.+-. . +.|...+++|.....+
T Consensus 162 ~glavd-~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 240 (386)
T 3v65_B 162 GGLAVD-WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240 (386)
T ss_dssp CCEEEE-TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEE-eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 678876 445666554 57789999998765544445555578999999985 55666665 5 7898889988765555
Q ss_pred cc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 265 ED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 265 ~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
-. ...+ -+.|+|+|+++.|--+-. ..+.|...|+. |....+
T Consensus 241 ~~~~~~~-----PnGlavd~~~~~lY~aD~----------~~~~I~~~d~d-G~~~~~ 282 (386)
T 3v65_B 241 ADTHLFW-----PNGLTIDYAGRRMYWVDA----------KHHVIERANLD-GSHRKA 282 (386)
T ss_dssp ECSSCSC-----EEEEEEEGGGTEEEEEET----------TTTEEEEECTT-SCSCEE
T ss_pred EECCCCC-----eeeEEEeCCCCEEEEEEC----------CCCEEEEEeCC-CCeeEE
Confidence 32 2222 379999998777765533 34789999965 443333
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00034 Score=67.00 Aligned_cols=183 Identities=9% Similarity=0.015 Sum_probs=120.5
Q ss_pred CCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC---CeEEEE-EeecCCceeEEEEEe
Q 016446 122 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED---GTVLKV-FYHLLHRNKKVDFIE 195 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t---G~~l~t-l~~~~~~~~~v~f~~ 195 (389)
...|+.-|+.+++....+. .....+++|. .++.|..+. ...+.|+..++.+ |....+ +.........+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D--~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd- 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD- 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEEEECSSCSCCCEEEEE-
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEE--CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe-
Confidence 3578888998776555555 3678899999 577777664 3357899999875 233333 32222445778876
Q ss_pred cCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc-C-CeEEEEeCCCcEEEEeccCcCCc
Q 016446 196 QFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWH 271 (389)
Q Consensus 196 ~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s-D-~tIklWd~~G~~l~tl~gh~~~~ 271 (389)
+.++.|..+ ..+++|.+.|+........+......+..+++.| +|.++.+.. . +.|...+++|+..+.+......
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~- 164 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ- 164 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-
T ss_pred ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCC-
Confidence 445666555 5789999999975554444444556889999998 566666665 4 7888889998876665322211
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 272 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 272 ~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
.-+.++|+|+++.|--+.. ..+.|...|+. |...+++
T Consensus 165 ---~P~gla~d~~~~~lY~~D~----------~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 165 ---WPNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp ---CEEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred ---CceEEEEeccCCEEEEEEC----------CCCeEEEEecC-CCceEEE
Confidence 1479999998887765533 24799999975 5444444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00038 Score=66.93 Aligned_cols=262 Identities=12% Similarity=0.064 Sum_probs=146.1
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeec---CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~---~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
..+..|.|. +..+| ..+.|.| +...+-|+.-..+.. .....+++|+|.| +..++. . .+ . .
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g----~~-g-----~- 100 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-G----EP-P-----I- 100 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-E----ET-T-----E-
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-E----CC-C-----e-
Confidence 468899986 55566 5567776 444444544333322 1234789999986 443333 2 11 1 1
Q ss_pred eEeEecc-CCCCCcceeEeee-----cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE---EEEecCCcEEEEEE
Q 016446 79 KIEYIRR-GKPDSGFALFESE-----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKHVQEIKI 149 (389)
Q Consensus 79 ~l~~i~~-g~~~~~~~l~~~~-----~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~---l~tl~~~~V~~vaf 149 (389)
|+--.. |+. |+.. ..+.+..+++. ++++.++.+...+-+|-+| .|+- +.......+.+++|
T Consensus 101 -i~~S~DgG~t------W~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 101 -MLHTTDGGQS------WSQIPLDPKLPGSPRLIKAL-GNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp -EEEESSTTSS------CEECCCCTTCSSCEEEEEEE-ETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEE
T ss_pred -EEEECCCCCC------ceECccccCCCCCeEEEEEE-CCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEE
Confidence 111122 321 2210 11234567886 5788888765433345554 3542 22112357899999
Q ss_pred c-CCceEEEEecCCCCeeEEEEEc--CCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc-
Q 016446 150 S-PGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR- 225 (389)
Q Consensus 150 S-~g~~la~~~~~s~d~tiklWd~--~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~- 225 (389)
. ++..++.+..+ ...+-+|- .+-+.+.. .....+..+++. ++ +.+.+.+.++.+.+++...|+.-+.+.
T Consensus 171 ~~~~~~~~~g~~G---~~~~S~d~gG~tW~~~~~--~~~~~~~~~~~~-~~-g~~~~~~~~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SPSGEYVAVSSRG---SFYSTWEPGQTAWEPHNR--TTSRRLHNMGFT-PD-GRLWMIVNGGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CTTSCEEEEETTS---SEEEEECTTCSSCEEEEC--CSSSCEEEEEEC-TT-SCEEEEETTTEEEEEETTEEEEECCCBC
T ss_pred cCCCcEEEEECCC---cEEEEeCCCCCceeECCC--CCCCccceeEEC-CC-CCEEEEeCCceEEEecCCCCCeeEeccC
Confidence 9 56666654222 34444552 22233321 223456777775 43 456667778888887543355433322
Q ss_pred c---CCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 016446 226 T---EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 301 (389)
Q Consensus 226 g---h~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~ 301 (389)
+ +...+.+++|.|++++++.+.+++| ++..+ |+--..+...... + ..+.+|+|.+++++++.|
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~-~-~~~~~v~~~~~~~~~~~G---------- 310 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKV-P-SNFYKILFFSPDQGFILG---------- 310 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTS-S-SCCCEEEEEETTEEEEEC----------
T ss_pred CcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCC-C-CCeEEEEEECCCceEEEc----------
Confidence 1 3346899999999999998888888 56666 7655555422110 0 125789998888777664
Q ss_pred CCCCCeEEEEe
Q 016446 302 EGSAGSINVSS 312 (389)
Q Consensus 302 ~s~D~tIklWd 312 (389)
++|+|.-++
T Consensus 311 --~~G~i~~~~ 319 (327)
T 2xbg_A 311 --QKGILLRYV 319 (327)
T ss_dssp --STTEEEEEC
T ss_pred --CCceEEEEc
Confidence 348776554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00059 Score=65.61 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=148.7
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeee------cccCceeEEEecCCCeEEE
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE------SLKWPGFVEFDDVNGKVLT 117 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~------~~~~~~~v~Fs~pdG~~La 117 (389)
...+++|+|.+++..+|. +... .+ ++...-|+. |+.. ...++.+|+|+ | ++.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~----G~~g-------~i-~~s~DgG~t------W~~~~~~~~~~~~~~~~i~~~-~-~~~~~ 94 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV----GVNA-------TL-METRDGGQT------WEPRTLVLDHSDYRFNSVSFQ-G-NEGWI 94 (327)
T ss_dssp SSCEEEEEESSSSCEEEE----ETTT-------EE-EEESSTTSS------CEECCCCCSCCCCEEEEEEEE-T-TEEEE
T ss_pred CCcEEEEEECCCCcEEEE----cCCC-------eE-EEeCCCCCC------CeECCCCCCCCCccEEEEEec-C-CeEEE
Confidence 367999999988887764 3222 11 111112321 1100 11234578997 5 56666
Q ss_pred EecCCCeEEEEeCCCCeEEEEec-----CCcEEEEEEc-CCceEEEEecCCCCeeE-EEEEcCCCeEEEEEe-ecCCcee
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIS-PGIMLLIFNRSSSHVPL-KILSIEDGTVLKVFY-HLLHRNK 189 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~-----~~~V~~vafS-~g~~la~~~~~s~d~ti-klWd~~tG~~l~tl~-~~~~~~~ 189 (389)
. +.++.|.. .-..|+--.... ...+..|++. |+..+|++. . +.| |-+| .|+.-..+. .+...+.
T Consensus 95 ~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~---g~v~~S~D--gG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 95 V-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-V---GAIYRTKD--SGKNWQALVQEAIGVMR 166 (327)
T ss_dssp E-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-T---CCEEEESS--TTSSEEEEECSCCCCEE
T ss_pred E-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-C---ccEEEEcC--CCCCCEEeecCCCcceE
Confidence 4 45565543 222344211111 1357888887 677666542 2 333 3333 354333332 3345678
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEC--CCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEecc
Q 016446 190 KVDFIEQFNEKLLVKQENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 190 ~v~f~~~~~~~l~~~s~D~tIklWd~--~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~g 266 (389)
.++|. +++..++.+......+-+|- ++=+.+. .+....+..+++.|++++++.+.+|.+.+++.+ |+-...+..
T Consensus 167 ~~~~~-~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 167 NLNRS-PSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp EEEEC-TTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBC
T ss_pred EEEEc-CCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccC
Confidence 88886 44544444444444555553 2223332 345568899999999999887779998888655 654433321
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccc
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 346 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 346 (389)
..... ...+.+|+|.|+++++|.+. +++| ++....|+--..+.....
T Consensus 244 ~~~~~-~~~~~~v~~~~~~~~~~~g~------------~g~i-~~S~DgG~tW~~~~~~~~------------------- 290 (327)
T 2xbg_A 244 PLRRN-SVGFLDLAYRTPNEVWLAGG------------AGAL-LCSQDGGQTWQQDVDVKK------------------- 290 (327)
T ss_dssp TTSSC-CSCEEEEEESSSSCEEEEES------------TTCE-EEESSTTSSCEECGGGTT-------------------
T ss_pred CcccC-CcceEEEEecCCCEEEEEeC------------CCeE-EEeCCCCcccEEcCccCC-------------------
Confidence 10000 01268999999999999864 3666 454455655554442210
Q ss_pred ccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 347 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
. ...+++|+|.++++ ++.++.+|+|.-++
T Consensus 291 ---------~---~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 291 ---------V---PSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ---------S---SSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ---------C---CCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 0 03577899986665 55666788876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00097 Score=63.74 Aligned_cols=206 Identities=8% Similarity=0.021 Sum_probs=133.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCC---CeE-EEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTM-LYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~---g~~-l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd 171 (389)
.+..|..++|++.++++..+....+.|...++.+ +.. ...+. + .....+|+. .++.|..+. ...+.|.+.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d--~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEE--CCCCEEEEEe
Confidence 4456788999844677777878889999999865 232 22233 2 456889998 577776663 3347899999
Q ss_pred cCCCeEEEEE-eecCCceeEEEEEecCCCeEEEEeC-C-CcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCc-EEEEE
Q 016446 172 IEDGTVLKVF-YHLLHRNKKVDFIEQFNEKLLVKQE-N-ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTF 246 (389)
Q Consensus 172 ~~tG~~l~tl-~~~~~~~~~v~f~~~~~~~l~~~s~-D-~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~-~laS~ 246 (389)
+.. +...++ ......-..+++. |.++.|..+.. . +.|...++. |+..+.+ ...-..+..++++|+++ +..+-
T Consensus 106 ~~g-~~~~~~~~~~~~~P~~iavd-p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 106 TKG-VKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp TTS-SSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCC-CceEEEEECCCCCcceEEeC-CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 764 444444 3233556788887 55676666543 3 788888885 4444443 34456899999998655 44555
Q ss_pred c-CCeEEEEeCCCcEEEEeccC--cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 247 R-NRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 247 s-D~tIklWd~~G~~l~tl~gh--~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+ .+.|...|++|...+++... ...+ -..+++. .+.+.++- . ..+.|...|..+|+.+.++.
T Consensus 183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~-~~~ly~~d-~----------~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTD-I----------INEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSS----EEEEEEE-TTEEEEEE-T----------TTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEecCCCceEEEeecCCccCC----cEEEEEE-CCEEEEEE-C----------CCCeEEEEeCCCCcceEEEe
Confidence 6 88999999987655554321 1122 2578884 35555543 2 24799999988898888876
Q ss_pred CC
Q 016446 324 AT 325 (389)
Q Consensus 324 gH 325 (389)
..
T Consensus 247 ~~ 248 (316)
T 1ijq_A 247 EN 248 (316)
T ss_dssp CS
T ss_pred cC
Confidence 44
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.7e-05 Score=76.34 Aligned_cols=260 Identities=11% Similarity=0.099 Sum_probs=152.4
Q ss_pred cccCceeEEEecC--CCeEEEEecCCCeEEEEeCCCCeEEEEecC-----CcEEEEEE-------c-CCceEEEEecCC-
Q 016446 99 SLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI-------S-PGIMLLIFNRSS- 162 (389)
Q Consensus 99 ~~~~~~~v~Fs~p--dG~~Las~s~D~tiklWdl~~g~~l~tl~~-----~~V~~vaf-------S-~g~~la~~~~~s- 162 (389)
.+..|..++|+ | ++++.++....+.|++-|+++++....+.. ...+.|+| + +|.+|.++...+
T Consensus 137 ~~~~p~~la~d-p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 137 GFSDNGRLAFD-PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp CCCSEEEEEEE-TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred ccCCCCEEEEc-cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 34567889998 6 466666665557899999887776544432 25899999 9 677666665443
Q ss_pred ---CCeeEEEEEcCC-CeEE-----EEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECC-------CCeE-----
Q 016446 163 ---SHVPLKILSIED-GTVL-----KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR-------NAEL----- 220 (389)
Q Consensus 163 ---~d~tiklWd~~t-G~~l-----~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~-------tg~~----- 220 (389)
....|.+.+... |+.. +++.. ..+-..+++. |+++.|... ..++.|..+|++ +|+.
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavd-p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIH-PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEEC-TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEc-CCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 123455665333 2321 23321 1344567775 555666654 588899999998 6664
Q ss_pred ------EEE-c-ccCCCceEEEEEcCCCc-EEEEEc-CCeEEEEeCCCc--EE---EEeccCc---CCc-------CCCC
Q 016446 221 ------MEV-S-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE--LV---TSFEDHL---LWH-------PDCN 275 (389)
Q Consensus 221 ------~~~-l-~gh~~~v~sv~fspdg~-~laS~s-D~tIklWd~~G~--~l---~tl~gh~---~~~-------~~~~ 275 (389)
++. + .+...+.+.++|+|+|+ +.++-+ .+.|+.++.+|+ .+ .++.|.. +.. ....
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 222 1 23345678999999999 466666 889999776542 22 4454431 100 0001
Q ss_pred ee-EEEEC-------CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC----CCcccccCCCCCCCc
Q 016446 276 TN-NIYIT-------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS----PKVDDELGSSSTGKS 343 (389)
Q Consensus 276 v~-sv~fS-------pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~----~~~~~~~~~~~~~~~ 343 (389)
-. .++.. ++|.+.++-+. ...||..+ .+|+ +.++-|.... +.......+|+.
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~-----------N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~--- 437 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRL-----------NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDL--- 437 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGG-----------GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEET---
T ss_pred CeEEEEEccccccccCCCeEEEEECC-----------CCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCc---
Confidence 13 34554 57777776433 37999999 6784 6677664210 000000000100
Q ss_pred cccccccceecccccccCCEEEEEECCC-CCEEEEecCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpd-g~~LaSgs~D~tIrlW~ 388 (389)
-. ...+..-+.|+++|+ |.++++=+....||..+
T Consensus 438 ---~~--------~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 438 ---RE--------VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp ---TT--------TCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ---hh--------hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 00 112356789999997 77777777778888654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00019 Score=70.05 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=84.6
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec-----CCcEEEEEEcCC----ceEEEEecCCCC---e
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKISPG----IMLLIFNRSSSH---V 165 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~-----~~~V~~vafS~g----~~la~~~~~s~d---~ 165 (389)
+.+|..++|+ |||+++++- .++.|++++ +|+. +..+. ......|+|+|+ ..|..+.....+ .
T Consensus 30 l~~P~~ia~~-pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFL-PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEEC-TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEc-CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4578899998 899988765 569999998 5652 33332 246899999964 666665433222 5
Q ss_pred eEEEEEcCCCe-----E-EEEEe---ecCCceeEEEEEecCCCeEEEEeC-------------CCcEEEEECCC------
Q 016446 166 PLKILSIEDGT-----V-LKVFY---HLLHRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRN------ 217 (389)
Q Consensus 166 tiklWd~~tG~-----~-l~tl~---~~~~~~~~v~f~~~~~~~l~~~s~-------------D~tIklWd~~t------ 217 (389)
.|..++...++ . +..++ +..|.-..++|. |++...++.+. .+.|.-.|...
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 67777776542 2 22243 112344789997 66644444221 14555555542
Q ss_pred -------CeEEEEcccCCCceEEEEEcC-CCcEEEEEc
Q 016446 218 -------AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR 247 (389)
Q Consensus 218 -------g~~~~~l~gh~~~v~sv~fsp-dg~~laS~s 247 (389)
........||. .++.++|.| +|+++++-.
T Consensus 185 pf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred cccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence 01111112343 367789999 888888775
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00054 Score=69.06 Aligned_cols=233 Identities=9% Similarity=0.062 Sum_probs=141.6
Q ss_pred EEEee----ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 8 EIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 8 ~i~~~----~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.|.+. +..|..+...+.|+.++.++|+.. ++... ....+.|+|+|+|+.+++ ...+..+ ...-++-.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~-~~~P~giavd~dG~lyVa-d~~~~~~------~~gv~~~~ 213 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTN-IGQCADVNFTLNGDMVVV-DDQSSDT------NTGIYLFT 213 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCC-CSCEEEEEECTTCCEEEE-ECCSCTT------SEEEEEEC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecC-CCCccEEEECCCCCEEEE-cCCCCcc------cceEEEEE
Confidence 45555 245555555588999998766655 44433 367899999999994444 2111111 11112222
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEe-c---CCcEEEEEEc-CCceEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI-S---DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl-~---~~~V~~vafS-~g~~la~ 157 (389)
+.+..... ... ..+.+|..++++ | +|.+.++-..++.|+.+|..+|+....+ . ...-..++|+ +|.+|..
T Consensus 214 ~~~~~~~~-~~~--~~~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 214 RASGFTER-LSL--CNARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp GGGTTCCE-EEE--EECSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred CCCCeecc-ccc--cccCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 34433111 122 245678889998 7 8988888778899999999878763222 2 2233579999 5776766
Q ss_pred EecCCCCeeEEEEEcC--CCeEE--EEEeec---------------CCceeEEEEEe-------cCCCeEEEE-eCCCcE
Q 016446 158 FNRSSSHVPLKILSIE--DGTVL--KVFYHL---------------LHRNKKVDFIE-------QFNEKLLVK-QENENL 210 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~--tG~~l--~tl~~~---------------~~~~~~v~f~~-------~~~~~l~~~-s~D~tI 210 (389)
+.. ..+.|+.++.. +|+.. .++.+. ...-..++|.. ...+.|..+ ...+.|
T Consensus 290 ad~--~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 290 IYN--GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp EET--TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred EeC--CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 643 34788887754 45321 233332 11124477731 123445444 578999
Q ss_pred EEEECCCCeEEEEccc-----------------CCCceEEEEEc-CCCcEEEEEc-CCeEEEEeC
Q 016446 211 QILDVRNAELMEVSRT-----------------EFMTPSAFIFL-YENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 211 klWd~~tg~~~~~l~g-----------------h~~~v~sv~fs-pdg~~laS~s-D~tIklWd~ 256 (389)
+.++. +|+....... ....+..|++. ++|.++++-. .+.|+..++
T Consensus 368 ~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99996 6765443211 13458999999 8999998887 888887765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0043 Score=61.57 Aligned_cols=208 Identities=7% Similarity=0.020 Sum_probs=135.2
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC----eEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g----~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd 171 (389)
.+..+..++|++.++++..+-...+.|+.+++... .....+. -.....+|+.+ ++.|..+. ...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d--~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE--CCCCeEEEEe
Confidence 45667889999557777788778899999998642 2222222 24678999994 77776664 3347899999
Q ss_pred cCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE-EEEc-
Q 016446 172 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR- 247 (389)
Q Consensus 172 ~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l-aS~s- 247 (389)
+........+......-..|++. |.++.|..+. ..+.|...++............-..+..++++|+++.| .+-.
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavd-p~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEE-TTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCceEEEEeCCCCCcceEEEe-cccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 86544433333333455788887 5566666654 34789999986544444445555789999999765544 4545
Q ss_pred CCeEEEEeCCCcEEEEecc-C-cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 248 NRTVAVWNFRGELVTSFED-H-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 248 D~tIklWd~~G~~l~tl~g-h-~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
.+.|...|++|.-.+++-. + ...+ -.+|++. .+.++.+- .. .+.|...|..+|+.+.++...
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~l~~----P~gl~v~-~~~lywtd-~~----------~~~V~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 267 LHSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTD-II----------NEAIFSANRLTGSDVNLLAEN 330 (400)
T ss_dssp TTEEEEEETTSCCCEEEEECSSTTSS----EEEEEEE-TTEEEEEE-SS----------SCSEEEEESSSCCCCEEEECS
T ss_pred CCEEEEEeCCCCccEEEEeCCCCCCC----CEEEEEe-CCEEEEec-CC----------CCeEEEEEcCCCCceEEEecC
Confidence 8899999998765544432 1 1122 2567762 33344443 22 378999998889888887643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0017 Score=66.97 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=141.2
Q ss_pred cEEEEEecCceEEEEecccceeeeeeecCC---cceEEEEEE-------eeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 14 DIVFALAHSGVCAAFSRETNRRICFLNVSP---DEVIRSLFY-------NKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 14 ~~~a~~~~~gtiklW~~~tg~~l~tl~~~~---~~~v~sv~~-------spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.+.++--..+.|++.|++ ++.+.++.... .+..+.|+| +++|++|+.+...+... .. -+.+.+.+.
T Consensus 153 ~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~--~~-~~~V~~i~r 228 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLK-NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG--DE-SPSVYIIKR 228 (496)
T ss_dssp EEEEEEETEEEEEEEETT-TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG--GG-EEEEEEEEC
T ss_pred EEEEEECCCCeEEEEECC-CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc--cc-CceEEEEec
Confidence 344444445789999987 44454554332 235899999 99999777754322110 00 022333332
Q ss_pred cc-CCCCC-c-ceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCC-------CCeE--------------EEEe
Q 016446 84 RR-GKPDS-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NYTM--------------LYSI 139 (389)
Q Consensus 84 ~~-g~~~~-~-~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~-------~g~~--------------l~tl 139 (389)
.. |++.. . .... ..+.++..+++++.+|.++++--.++.|..+|++ +++. +.++
T Consensus 229 ~~~G~~~~~~~~~~v--~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~ 306 (496)
T 3kya_A 229 NADGTFDDRSDIQLI--AAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI 306 (496)
T ss_dssp CTTSCCSTTSCEEEE--EEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC
T ss_pred CCCCceeecccceee--ccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec
Confidence 22 45421 0 0122 2355788899983378888888889999999997 5553 3344
Q ss_pred c-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEE--cCCCeEE--EEEeecCC---------------ceeEEEEEe-c-
Q 016446 140 S-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILS--IEDGTVL--KVFYHLLH---------------RNKKVDFIE-Q- 196 (389)
Q Consensus 140 ~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd--~~tG~~l--~tl~~~~~---------------~~~~v~f~~-~- 196 (389)
. ..+-..|+|+ +|.+|..+. ...+.|+.++ ..+++.. .++.+..+ .-....+.. +
T Consensus 307 ~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~ 384 (496)
T 3kya_A 307 ADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPD 384 (496)
T ss_dssp SSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTT
T ss_pred CCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccc
Confidence 3 3456899999 577666664 3347888854 4455431 34443211 011133331 1
Q ss_pred ----CCCeEEEE-eCCCcEEEEECCCCeEEEEcccC------------------------CCceEEEEEcCC-CcEEEEE
Q 016446 197 ----FNEKLLVK-QENENLQILDVRNAELMEVSRTE------------------------FMTPSAFIFLYE-NQLFLTF 246 (389)
Q Consensus 197 ----~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh------------------------~~~v~sv~fspd-g~~laS~ 246 (389)
..+.|..+ ..++.||..+ .+|.. .++.|. ...+..|++.|+ |.+.++-
T Consensus 385 ~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD 462 (496)
T 3kya_A 385 YTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHD 462 (496)
T ss_dssp CCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEE
T ss_pred ccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEe
Confidence 23344444 5889999999 47754 344321 245889999997 9998888
Q ss_pred c-CCeEEEEeCCC-cEEEEe
Q 016446 247 R-NRTVAVWNFRG-ELVTSF 264 (389)
Q Consensus 247 s-D~tIklWd~~G-~~l~tl 264 (389)
. ...||..++++ .++...
T Consensus 463 ~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 463 QVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp TTTTEEEEEEECCCC-----
T ss_pred CCCCEEEEEECCCCcccccC
Confidence 8 88999999985 455433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0023 Score=61.61 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=133.3
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~ 176 (389)
..+.+++|++.+|++..+-...+.|+.+++..+... ..+. -.....+|+. .++.|..+. ...+.|.+.++. |.
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d--~~~~~I~~~~~d-G~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLD-GS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETT-SC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEE--CCCCEEEEEECC-CC
Confidence 345679998557888888888999999998765321 1121 2456789998 466666653 334689999975 44
Q ss_pred EEEEEe-ecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-CCeE
Q 016446 177 VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTV 251 (389)
Q Consensus 177 ~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D~tI 251 (389)
...++. .....-..+++. |.++.|..+. ..+.|...++............-..++.++|+|+ +++..+-+ .+.|
T Consensus 112 ~~~~l~~~~~~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I 190 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190 (318)
T ss_dssp SCEEEECSSCSSEEEEEEE-GGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEeCCCCCccEEEEe-CCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence 444443 333445788887 5566666654 4688888888543333333444567899999985 55555556 8899
Q ss_pred EEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 252 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 252 klWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
...|++|.-.+++-...... -..+++..+ .++.+ .. ..+.|...|..+|+.+.++...
T Consensus 191 ~~~d~dG~~~~~~~~~~~~~----P~glav~~~-~lywt-d~----------~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 191 HKSNLDGTNRQAVVKGSLPH----PFALTLFED-ILYWT-DW----------STHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEETTSCSCEEEECSCCSC----EEEEEEETT-EEEEE-ET----------TTTEEEEEETTTCCSCEEEECC
T ss_pred EEEcCCCCceEEEecCCCCC----ceEEEEeCC-EEEEE-ec----------CCCeEEEEECCCCCceEEEeCC
Confidence 99999876544443212222 367777533 34444 22 2479999998889887777543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0033 Score=62.40 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=120.0
Q ss_pred CCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC----eEEEEEeecCCceeEEEEEe
Q 016446 122 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG----TVLKVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG----~~l~tl~~~~~~~~~v~f~~ 195 (389)
...|+.-++...+....+. ...+.+|+|. .++.|..+. ...+.|+.+++.++ .....+.........+++.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD--~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD- 167 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD- 167 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE-
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEe--cCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE-
Confidence 4788888987665444444 3678999999 467776663 33478988997652 2222333233455677776
Q ss_pred cCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc--CCeEEEEeCCCcEEEEecc-CcCC
Q 016446 196 QFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFED-HLLW 270 (389)
Q Consensus 196 ~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s--D~tIklWd~~G~~l~tl~g-h~~~ 270 (389)
+.++.|... ...+.|.+.|+........+......+..+++.| +|.++.+-. .+.|...+++|...+.+-. ...+
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~ 247 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 247 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSC
T ss_pred ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCc
Confidence 335566555 5788999999976665555555566799999998 566666664 4789888998876555532 2222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
-+.|+|+|+++.|--+-. ..+.|...|+. |....++
T Consensus 248 -----P~glavd~~~~~lY~aD~----------~~~~I~~~d~d-G~~~~~~ 283 (400)
T 3p5b_L 248 -----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 283 (400)
T ss_dssp -----EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCCCEEE
T ss_pred -----eEEEEEEeCCCEEEEEEC----------CCCEEEEEeCC-CCccEEE
Confidence 489999998887776533 24789999975 5544444
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0034 Score=61.35 Aligned_cols=143 Identities=9% Similarity=0.072 Sum_probs=84.8
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCe-EEEEec-----CCcEEEEEEcCC----ceEEEEecC-CCC---
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----DKHVQEIKISPG----IMLLIFNRS-SSH--- 164 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~-~l~tl~-----~~~V~~vafS~g----~~la~~~~~-s~d--- 164 (389)
.+.+|..++|. |||+++++- .++.|++++ .+|+ .+..+. ......|+|+|+ ..|..+... ..+
T Consensus 27 ~l~~P~~ia~~-pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 27 DLEVPWSIAPL-GGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCSCEEEEEEE-ETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCCeEEEEc-CCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 35578899998 899988865 459999998 4676 333332 246899999964 666555432 122
Q ss_pred -eeEEEEEcCCC-------eEE-EEEe-ecCCceeEEEEEecCCCeEEEEeC-------------CCcEEEEECCCCe--
Q 016446 165 -VPLKILSIEDG-------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNAE-- 219 (389)
Q Consensus 165 -~tiklWd~~tG-------~~l-~tl~-~~~~~~~~v~f~~~~~~~l~~~s~-------------D~tIklWd~~tg~-- 219 (389)
..|..++...+ +.+ ..+. ...|.-..++|. |++...++.+. .+.|.-.|.. |+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence 45666776554 122 2243 122344778997 66654444222 1345555553 32
Q ss_pred -------EEEEcccCCCceEEEEEcC-CCcEEEEEc
Q 016446 220 -------LMEVSRTEFMTPSAFIFLY-ENQLFLTFR 247 (389)
Q Consensus 220 -------~~~~l~gh~~~v~sv~fsp-dg~~laS~s 247 (389)
......||. .++.++|.| +|+++++-.
T Consensus 182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 111123443 356799999 899888774
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0015 Score=64.55 Aligned_cols=192 Identities=13% Similarity=0.190 Sum_probs=124.5
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCc-----e--EEEEecCCC--CeeEEEEEc--CCCeEEEEEe
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-----M--LLIFNRSSS--HVPLKILSI--EDGTVLKVFY 182 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~-----~--la~~~~~s~--d~tiklWd~--~tG~~l~tl~ 182 (389)
.+++...-++-+.++|+ +|+.++.+....++.|..-||- . ||.++ +.. +++|.++++ .+++ |..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as-~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAAS-NRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEE-ECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEe-CCCCCCCeEEEEEECCCCCc-eeecc
Confidence 33444445678999999 9999999987777777766543 2 33332 333 589999966 5665 55552
Q ss_pred e------c-CCceeEEEE--EecCCC-eEEEEeCCCcEEEEEC-------CCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 183 H------L-LHRNKKVDF--IEQFNE-KLLVKQENENLQILDV-------RNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 183 ~------~-~~~~~~v~f--~~~~~~-~l~~~s~D~tIklWd~-------~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
. . ......+++ ++..+. ++.....++.+..|++ .+++.++++.-. ..+..++..|+...|--
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEE
Confidence 1 0 133455666 322343 3555778899999998 345667776654 47889999887666666
Q ss_pred Ec-CCeEEEEeCC------CcEEEEec-cCcCCcCCCCeeEEEE--CCCCC-EEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 246 FR-NRTVAVWNFR------GELVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 246 ~s-D~tIklWd~~------G~~l~tl~-gh~~~~~~~~v~sv~f--SpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+- |.-|..++.+ ++++..+. +|... .+..+++ .+||+ ||+..|.. +++.-++|.+
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~a----DvEGLai~~~~~g~gyLivSsQG----------~~s~~Vydr~ 262 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTR----DIEGLTIYYAADGKGYLMASSQG----------NSSYAIYDRQ 262 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCS----CEEEEEEEECGGGCEEEEEEEGG----------GTEEEEEESS
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCcccc----CcceEEEEecCCCCEEEEEEcCC----------CCEEEEEECC
Confidence 65 7554444433 34665553 33322 1677877 78888 77777754 4799999986
Q ss_pred -CCeEEEEec
Q 016446 315 -TGKCLAKIN 323 (389)
Q Consensus 315 -tg~~l~tl~ 323 (389)
+.+.+..++
T Consensus 263 ~~~~~vg~f~ 272 (355)
T 3amr_A 263 GKNKYVADFR 272 (355)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEEEEEE
Confidence 678888875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.018 Score=62.55 Aligned_cols=214 Identities=9% Similarity=0.044 Sum_probs=138.6
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCC----eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEE
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 171 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g----~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd 171 (389)
.+..+..++|++.++++..+-...+.|+.+++... .....+. -.....||+. .++.|..+. ...+.|.+-+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD--~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe--cCCCeEEEEe
Confidence 45567789998447888888888899999998642 2222233 2467789999 577777764 4457999999
Q ss_pred cCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc
Q 016446 172 IEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR 247 (389)
Q Consensus 172 ~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s 247 (389)
+. |+..++|. .....-..|++. |..+.|..+- ..+.|...++........+...-.++..|++.|. +++..+-.
T Consensus 500 ld-G~~~~~l~~~~l~~P~gIaVD-p~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 500 TK-GVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp TT-SSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CC-CCeEEEEEeCCCCCcceEEEe-cCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC
Confidence 76 45555554 334456888887 5566666654 3378999999655544444555578999999965 55555555
Q ss_pred -CCeEEEEeCCCcEEEEec-cCcC-CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 248 -NRTVAVWNFRGELVTSFE-DHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 248 -D~tIklWd~~G~~l~tl~-gh~~-~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.+.|...+++|..++++- ++.. .+ -.+|++ ++.+|.-... ..+.|..-|..+|+.+.++..
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~----P~glav--~~~~lYwtD~----------~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAH----PFSLAV--FEDKVFWTDI----------INEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSS----EEEEEE--ETTEEEEEET----------TTTEEEEEETTTCCCCEEEEC
T ss_pred CCCcEEEEecCCCceEEEecCCCccCC----CCEEEE--eCCEEEEEEC----------CCCEEEEEeCCCCcceEEeec
Confidence 789999999876554443 2221 11 246666 4445544332 247888888889988888865
Q ss_pred CCCCCCcc
Q 016446 325 TNCSPKVD 332 (389)
Q Consensus 325 H~~~~~~~ 332 (389)
.-..|.+.
T Consensus 642 ~l~~P~~i 649 (791)
T 3m0c_C 642 NLLSPEDM 649 (791)
T ss_dssp SCSCCCCE
T ss_pred CCCCceeE
Confidence 44334433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.062 Score=56.54 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=160.1
Q ss_pred EEEee---ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe-
Q 016446 8 EIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI- 83 (389)
Q Consensus 8 ~i~~~---~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i- 83 (389)
.|.+. +.+..+-...+.|.+-+++ |....++-...-+.-+.|++.|.+..|..+ +.+.. . +|+-.
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l~~P~~Iavdp~~g~ly~t--D~g~~------~--~I~r~~ 156 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWT--DWGEV------P--KIERAG 156 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCCEEEETTTTEEEEE--ECSSS------C--EEEEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCCCCCceEEEecCCCeEEEe--ccCCC------C--EEEEEE
Confidence 44444 4556666778899999985 766656653333566899999986555442 11111 1 22222
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe-c--CCcEEEEEEcCCceEEEEec
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKHVQEIKISPGIMLLIFNR 160 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl-~--~~~V~~vafS~g~~la~~~~ 160 (389)
..|.. ...+. ...+.+|..+++++.++++..+-+..+.|..-|+. |.....+ . ...-.+|++..+ .|..+.
T Consensus 157 ~dG~~--~~~l~-~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gi~~~~~-~ly~td- 230 (619)
T 3s94_A 157 MDGSS--RFIII-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLFED-ILYWTD- 230 (619)
T ss_dssp TTSCS--CEEEE-CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC---------CCCEEESSS-EEEEEC-
T ss_pred CCCCc--eEEEE-eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEEeCCCCCceEEEEeCC-EEEEec-
Confidence 34543 12222 24566889999995467777777778889999984 4433322 2 122346677644 555553
Q ss_pred CCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE-------------------------E----------ecCC-------
Q 016446 161 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF-------------------------I----------EQFN------- 198 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f-------------------------~----------~~~~------- 198 (389)
...+.|..-|..+|+.+..+......-..|++ . +|.+
T Consensus 231 -~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~ 309 (619)
T 3s94_A 231 -WSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENG 309 (619)
T ss_dssp -TTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTS
T ss_pred -CCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccC
Confidence 34478988998888766655422111122222 1 1111
Q ss_pred -------CeEEEEeCCCcEEEEECCCCeE--EEEcccCCCceEEEEEcC-CCcEEEEEc-CCeEEEEeCCCcEEEEeccC
Q 016446 199 -------EKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDH 267 (389)
Q Consensus 199 -------~~l~~~s~D~tIklWd~~tg~~--~~~l~gh~~~v~sv~fsp-dg~~laS~s-D~tIklWd~~G~~l~tl~gh 267 (389)
+.++.-+..+.|+--++.+++. +......-..+.+++|.+ +++++.+-. .+.|+-++++|....++...
T Consensus 310 ~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~ 389 (619)
T 3s94_A 310 KTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA 389 (619)
T ss_dssp SCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC
Confidence 1112212234666667765432 111112234678999988 677777776 88999999986533333321
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
... ....+||.+.++.|.-+. +..++|.+-++. |+...+|-
T Consensus 390 ~~~----~p~GlAvD~~~~~lY~tD----------~~~~~I~v~~~~-G~~~~~l~ 430 (619)
T 3s94_A 390 QIA----HPDGIAVDWVARNLYWTD----------TGTDRIEVTRLN-GTMRKILI 430 (619)
T ss_dssp SCS----CCCEEEEETTTTEEEEEE----------TTTTEEEEEETT-SCSCEEEE
T ss_pred CCC----CcCceEEecccCcEEEEe----------CCCCcEEEEeCC-CCeEEEEE
Confidence 111 147999998655554432 234789998865 65555554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.012 Score=55.34 Aligned_cols=183 Identities=11% Similarity=0.173 Sum_probs=115.0
Q ss_pred ceeEEEecCCC-eEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe--
Q 016446 103 PGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-- 176 (389)
Q Consensus 103 ~~~v~Fs~pdG-~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~-- 176 (389)
+..++|+ |++ ++.|....++.|-.-|+. |+.+.++. + .....|++.++..++.++. .++.+.+.++....
T Consensus 29 lSGla~~-~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 29 ISSLTWS-AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDE--RDYAIYVISLTPNSEV 104 (255)
T ss_dssp EEEEEEE-TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEET--TTTEEEEEEECTTCCE
T ss_pred cceeEEe-CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCCee
Confidence 3469998 654 555556678888888986 99888875 2 5788999995444544432 33678788765433
Q ss_pred -EEEEEee-cC-----CceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeEEEEc-------ccCCCceEEEEEcCC
Q 016446 177 -VLKVFYH-LL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVS-------RTEFMTPSAFIFLYE 239 (389)
Q Consensus 177 -~l~tl~~-~~-----~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~~~~l-------~gh~~~v~sv~fspd 239 (389)
.+..... .. .....+++. |.+++|.++.+.....||.+. ++..++.+ ..+-..+.+++|.|.
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 2333331 11 112789998 567777777765566666664 11122222 113345789999885
Q ss_pred -CcEEEEEc-CCeEEEEeCCCcEEEEec---cC-cC--CcCCCCeeEEEECCCCCEEEEEec
Q 016446 240 -NQLFLTFR-NRTVAVWNFRGELVTSFE---DH-LL--WHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 240 -g~~laS~s-D~tIklWd~~G~~l~tl~---gh-~~--~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
|++++.+. .+.+-..|.+|+.+..+. |. .. .++ .-..|+|.|+|++.++ |+
T Consensus 184 tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~--qpEGia~d~~G~lyIv-sE 242 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIK--QAEGVAMDASGNIYIV-SE 242 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCC--SEEEEEECTTCCEEEE-ET
T ss_pred CCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccC--CCCeeEECCCCCEEEE-cC
Confidence 55666665 889999999998765543 21 10 011 1379999999998777 44
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00032 Score=75.03 Aligned_cols=213 Identities=9% Similarity=0.068 Sum_probs=129.8
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCC----CeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEc
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~----g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~ 172 (389)
+..+..|+|++.++.+..+-...+.|+..++.+ ......+.. .....||+. .++.|..+ +...+.|.+.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~t--D~~~~~I~v~d~ 482 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT--DSVLGTVSVADT 482 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEEC--CTTTSCEEEEBS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEE--eccCCeEEEEec
Confidence 445678999844566667767788999999865 122222221 245678988 56666554 344578999997
Q ss_pred CCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-
Q 016446 173 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR- 247 (389)
Q Consensus 173 ~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s- 247 (389)
.+ ..+.++. .....-..|++. |.++.|..+. ..+.|...++........+...-..++.|+|+|+ +++..+-+
T Consensus 483 dg-~~~~~l~~~~~~~P~giavD-p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 483 KG-VKRKTLFREQGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp SS-CCEEEECCCSSCCCCCEECC-SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred CC-CceEEEEeCCCCCcceEEEc-cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence 64 4444443 222444677776 4456655543 2378888888543333333344567889999986 55556666
Q ss_pred CCeEEEEeCCCcEEEEeccC--cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 248 NRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 248 D~tIklWd~~G~~l~tl~gh--~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
.+.|...+++|.-.+++... ...++ ..|++..+ .++++. . ..+.|...|..+|+.+.+|...
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P----~glavd~~-~lywtd-~----------~~~~V~~~d~~~G~~~~~i~~~ 624 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFED-KVFWTD-I----------INEAIFSANRLTGSDVNLLAEN 624 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSC----CCCEEETT-EEEEEC-S----------TTTCEEEEETTTEEEEECCCTT
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCc----eEeEEECC-EEEEEe-C----------CCCeEEEEEccCCCceEEeecC
Confidence 88999999987554444321 11221 45666444 333332 2 2479999998899999888643
Q ss_pred CCCCCcc
Q 016446 326 NCSPKVD 332 (389)
Q Consensus 326 ~~~~~~~ 332 (389)
...|.+.
T Consensus 625 ~~~P~~i 631 (699)
T 1n7d_A 625 LLSPEDM 631 (699)
T ss_dssp CSSCCCC
T ss_pred CCCCcEE
Confidence 3234433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=77.97 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=112.5
Q ss_pred CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC----CeEEEEEeecCCceeEEEEE
Q 016446 121 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED----GTVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t----G~~l~tl~~~~~~~~~v~f~ 194 (389)
..+.|+.-++.+.+....+. ...+.+|+|. .++.|..+ +...+.|+..++.+ ......+.........|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~s--D~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS--DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEEC--CTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEE--ecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 34678888887666544443 3567789999 47777665 33457898898765 12222221111233456654
Q ss_pred ecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-C-CeEEEEeCCCcEEEEeccCcCC
Q 016446 195 EQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLW 270 (389)
Q Consensus 195 ~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D-~tIklWd~~G~~l~tl~gh~~~ 270 (389)
+.++.|..+ ...++|.+.++..+.....+......+..+++.|+ |.++.+-. . ++|...+++|...+.+......
T Consensus 462 -~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 -WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp -CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred -eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 234555554 57789999999766555555544567889999985 55555554 3 7888888887765555322211
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
. -+.|+|+|++++|.-+-. ..+.|...|+. |.-.+++
T Consensus 541 ~----PnGlavd~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 541 W----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp S----CCCEEECTTTCCEEEEET----------TTTEEEEECSS-SSCCEEE
T ss_pred C----ccEEEEeccCCEEEEEec----------CCCeEEEEccC-CCceEEE
Confidence 1 378999998766654432 24789999975 5444444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.033 Score=60.51 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=120.1
Q ss_pred CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCC----eEEEEEeecCCceeEEEEE
Q 016446 121 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG----TVLKVFYHLLHRNKKVDFI 194 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG----~~l~tl~~~~~~~~~v~f~ 194 (389)
....|+.-++...+....+. ...+.+|+|. .+++|..+.. ..+.|+.+++... .....+.........|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 34678888886655443344 3678899999 4666666543 3478988998642 2223333233555778876
Q ss_pred ecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-C-CeEEEEeCCCcEEEEeccCcCC
Q 016446 195 EQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLW 270 (389)
Q Consensus 195 ~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D-~tIklWd~~G~~l~tl~gh~~~ 270 (389)
+.++.|..+ ...++|.+.++........+......+..||+.|. |.++.+-. . +.|..-+++|...++|-.....
T Consensus 480 -~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~ 558 (791)
T 3m0c_C 480 -WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 558 (791)
T ss_dssp -TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred -ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence 446666665 58899999999765544444455667999999986 67777765 4 7899999998766666433211
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
. -+.|++.|+++.|.-+-. ..+.|...|+. |....++
T Consensus 559 ~----P~GLavD~~~~~LYwaD~----------~~~~I~~~d~d-G~~~~~v 595 (791)
T 3m0c_C 559 W----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 595 (791)
T ss_dssp C----EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred C----ceEEEEecCCCeEEEEeC----------CCCcEEEEecC-CCceEEE
Confidence 1 489999988777766533 24789999965 5544444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.016 Score=54.61 Aligned_cols=190 Identities=14% Similarity=0.172 Sum_probs=118.2
Q ss_pred eecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEE
Q 016446 39 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 118 (389)
Q Consensus 39 l~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las 118 (389)
|.+-. +.+-.++|+|++++|..+.. .+ ..+..-|.. |++....++ .-...+..|++. ++|+++++
T Consensus 22 l~g~~-~~lSGla~~~~~~~L~aV~d---~~------~~I~~ld~~-g~v~~~i~l---~g~~D~EGIa~~-~~g~~~vs 86 (255)
T 3qqz_A 22 IAGIT-NNISSLTWSAQSNTLFSTIN---KP------AAIVEMTTN-GDLIRTIPL---DFVKDLETIEYI-GDNQFVIS 86 (255)
T ss_dssp CTTCC-SCEEEEEEETTTTEEEEEEE---TT------EEEEEEETT-CCEEEEEEC---SSCSSEEEEEEC-STTEEEEE
T ss_pred CCCcc-cCcceeEEeCCCCEEEEEEC---CC------CeEEEEeCC-CCEEEEEec---CCCCChHHeEEe-CCCEEEEE
Confidence 44543 45899999999998888652 23 344444534 775221111 222456679997 89998777
Q ss_pred ecCCCeEEEEeCCCCeE---EEEe--c------CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcC---CCeEEEEEee
Q 016446 119 SAQDSIYKVFDLKNYTM---LYSI--S------DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE---DGTVLKVFYH 183 (389)
Q Consensus 119 ~s~D~tiklWdl~~g~~---l~tl--~------~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~---tG~~l~tl~~ 183 (389)
.-.++.+.+.++..... +... . ......+|+.| +++|.++...+ +.+||.+. +++.+..+..
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---PIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---SEEEEEEESTTCSSCCEEEEC
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC---CceEEEEcccccCCceeeecc
Confidence 66778888888754331 2222 1 23568999995 66776664332 44555443 2222333321
Q ss_pred -------cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--cc-cC------CCceEEEEEcCCCcEEEEEc
Q 016446 184 -------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SR-TE------FMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 184 -------~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~--l~-gh------~~~v~sv~fspdg~~laS~s 247 (389)
+....-.++|.+..+..++.+.+.+.+-..|.+ |+.+.. |. +. ..+...|+|.|+|++.+++-
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE 242 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 242 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence 223457899986555555557799999999985 555554 33 32 24889999999999988864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.65 E-value=0.048 Score=52.32 Aligned_cols=226 Identities=10% Similarity=0.055 Sum_probs=142.4
Q ss_pred CceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeec
Q 016446 22 SGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 99 (389)
Q Consensus 22 ~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~ 99 (389)
...|+..+++.+. ....+.+ ......|+|.+.++.|.-+ +. .. ..|...++..+.. ...+.. ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~--~~~~~~ld~d~~~~~lyw~--D~-~~------~~I~r~~~~g~~~--~~~~~~-~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG--LEDAAAVDFVFSHGLIYWS--DV-SE------EAIKRTEFNKTES--VQNVVV-SG 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE--EEEEEEEEEEGGGTEEEEE--ET-TT------TEEEEEETTSSSC--CCEEEE-EC
T ss_pred cCeEEEEECCCCceEEEEEecC--CCccEEEEEEeCCCEEEEE--EC-CC------CcEEEEEccCCCc--eEEEEc-CC
Confidence 4678888887442 1112222 2456789999976666542 11 22 3444445333321 112222 34
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCC
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+..|..+++++.+|.+..+-...+.|.+.++. |+....+. ...-.++++.| ++.|..+... ....|...++. |
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~d-G 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMD-G 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETT-S
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcC-C
Confidence 55678899984477888888888999999984 44333332 25678999995 5666665422 23577777754 5
Q ss_pred eEEEEEe-ecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEE
Q 016446 176 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 252 (389)
Q Consensus 176 ~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIk 252 (389)
+...++. .....-..+++. ++++.|..+ +..+.|...|+........+.+....+..+++. .+.++.+-. .+.|.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSIL 232 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCCccEEEEe-ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEE
Confidence 5544443 222344788987 567777766 578999999997544444445456678888885 456666776 88999
Q ss_pred EEeC-CCcEEEEecc
Q 016446 253 VWNF-RGELVTSFED 266 (389)
Q Consensus 253 lWd~-~G~~l~tl~g 266 (389)
..|. +|+.++++..
T Consensus 233 ~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 233 ACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTCCSCEEEEC
T ss_pred EEECCCCCceEEEeC
Confidence 9998 4887776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.049 Score=57.45 Aligned_cols=177 Identities=10% Similarity=0.066 Sum_probs=119.3
Q ss_pred CCCeEEEEeCCCCeEEEEec--C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec
Q 016446 121 QDSIYKVFDLKNYTMLYSIS--D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~ 196 (389)
....|+.=++.+.+....+. + ..+.+|+|. .++.|..+. -..+.|+.+++..+.....+..-......+++. +
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD--~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD-~ 89 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD-W 89 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE-T
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE--CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE-e
Confidence 45788888987655444443 2 468899999 466766663 345789999986554444444222445778876 4
Q ss_pred CCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc--CCeEEEEeCCCcEEEEeccCcCCcC
Q 016446 197 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHP 272 (389)
Q Consensus 197 ~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s--D~tIklWd~~G~~l~tl~gh~~~~~ 272 (389)
.++.|..+ ...+.|.+-++........+...-..++.+++.| +|.+..+-. .+.|...+++|.....+-....+
T Consensus 90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~-- 167 (628)
T 4a0p_A 90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-- 167 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSS--
T ss_pred CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCC--
Confidence 46666655 5788999999965544333345556789999998 677777763 56888888887655555433322
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
-+.|+|+|+++.|--+-. ..+.|...|+..
T Consensus 168 ---P~GlalD~~~~~LY~aD~----------~~~~I~~~d~dG 197 (628)
T 4a0p_A 168 ---ANGLTIDYAKRRLYWTDL----------DTNLIESSNMLG 197 (628)
T ss_dssp ---EEEEEEETTTTEEEEEET----------TTTEEEEEETTS
T ss_pred ---cceEEEccccCEEEEEEC----------CCCEEEEEcCCC
Confidence 489999999887776543 347899999753
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.061 Score=52.83 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=88.0
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec------CCcEEEEEEcC----CceEEEEecCCCCee
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIKISP----GIMLLIFNRSSSHVP 166 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~------~~~V~~vafS~----g~~la~~~~~s~d~t 166 (389)
.+.+|+.++|. |||+++++--..+.|++++..+|+. +..+. ......|+|+| +..|..+-+...+..
T Consensus 30 gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 45678999998 9999999876689999998766764 33332 24689999996 355544322223355
Q ss_pred EEEEEcCCC----------eEE-EEEe-ecCCceeEEEEEecCCCeEEEEeC-------------CCcEEEEECCCCe--
Q 016446 167 LKILSIEDG----------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNAE-- 219 (389)
Q Consensus 167 iklWd~~tG----------~~l-~tl~-~~~~~~~~v~f~~~~~~~l~~~s~-------------D~tIklWd~~tg~-- 219 (389)
|--+.+..+ +.+ ..+. ...|.-..++|. |++...++.+. -+.|.-.|.. |+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCcc
Confidence 555655431 222 2343 223445789997 66655554331 1333333443 22
Q ss_pred -------EEEEcccCCCceEEEEEcCCCcEEEEEc--CC
Q 016446 220 -------LMEVSRTEFMTPSAFIFLYENQLFLTFR--NR 249 (389)
Q Consensus 220 -------~~~~l~gh~~~v~sv~fspdg~~laS~s--D~ 249 (389)
....-.||. -+..++|.|+|++.++-. |+
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~ 224 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDT 224 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSS
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCC
Confidence 111123554 356799999999888773 55
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.019 Score=60.44 Aligned_cols=207 Identities=15% Similarity=0.157 Sum_probs=132.2
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE-EEEec-C-CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCC
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~-l~tl~-~-~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG 175 (389)
+..+..|+|++.+|.+..+-...+.|+.+++..... ...+. + .....+|+.+ ++.|..+. ...+.|.+-++. |
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d--~~~~~I~v~~~d-G 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLD-G 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETT-S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEe--CCCCEEEEEECC-C
Confidence 445678999955777777777788999999865432 23333 2 5789999994 77777764 445799999975 5
Q ss_pred eEEEEEe-ecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCC-CcEEEEEc-CCe
Q 016446 176 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 250 (389)
Q Consensus 176 ~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspd-g~~laS~s-D~t 250 (389)
+..+++. .....-+.|++. |.++.|..+. ....|..-++............-.++..+++.|+ +++..+-. .+.
T Consensus 116 ~~~~~l~~~~l~~P~~Iavd-p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~ 194 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCCceEEEe-cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence 5444554 344556888887 5566776664 3466777777543333333445668999999986 55555555 789
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|...|++|.-.+++......+| ..|++.+| .+..+ .. ..+.|..-|..+|+.+..+....
T Consensus 195 I~~~~~dG~~~~~~~~~~~~~P----~gi~~~~~-~ly~t-d~----------~~~~V~~~d~~tg~~~~~i~~~~ 254 (619)
T 3s94_A 195 IHKSNLDGTNRQAVVKGSLPHP----FALTLFED-ILYWT-DW----------STHSILACNKYTGEGLREIHSDI 254 (619)
T ss_dssp EEEESSSCCEEC---------C----CCEEESSS-EEEEE-CT----------TTCSEEEEESSSCCCCEECCSCC
T ss_pred EEEecCCCCccEEEEeCCCCCc----eEEEEeCC-EEEEe-cC----------CCCEEEEEECCCCcccEEEecCC
Confidence 9999998765554432122222 57888766 44443 22 24789999988998877776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.036 Score=53.83 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=82.2
Q ss_pred cccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEE---EEec------CCcEEEEEEcC----CceEEEEecCC-C
Q 016446 99 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML---YSIS------DKHVQEIKISP----GIMLLIFNRSS-S 163 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l---~tl~------~~~V~~vafS~----g~~la~~~~~s-~ 163 (389)
.+.+|..++|. |||+ ++++- ..+.|++.+. +|+.. ..+. ......|+|+| +..|..+.... .
T Consensus 16 ~l~~P~~i~~~-pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 16 KLDHPWALAFL-PDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp EESSEEEEEEC-STTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CCCCcEEEEEc-CCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 35578899998 8999 77764 5789999985 55432 1111 23578999996 56665553221 1
Q ss_pred ----CeeEEEEEcCCC--e--EEEE-Eee------cCCceeEEEEEecCCCeEEEEeCC--------------CcEEEEE
Q 016446 164 ----HVPLKILSIEDG--T--VLKV-FYH------LLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILD 214 (389)
Q Consensus 164 ----d~tiklWd~~tG--~--~l~t-l~~------~~~~~~~v~f~~~~~~~l~~~s~D--------------~tIklWd 214 (389)
...|..+++..+ + ..++ +.. ..|.-..++|. |++ .|..+..| +.|.-.|
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKG-YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCC-cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235555665433 1 1122 211 11334679997 555 55554322 3565566
Q ss_pred CCCCe------------EEEEc-ccCCCceEEEEEcC-CCcEEEEEc
Q 016446 215 VRNAE------------LMEVS-RTEFMTPSAFIFLY-ENQLFLTFR 247 (389)
Q Consensus 215 ~~tg~------------~~~~l-~gh~~~v~sv~fsp-dg~~laS~s 247 (389)
....- ..+++ .||. .++.++|.| +|+++++-.
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEec
Confidence 64320 11111 2443 478899999 898888764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.039 Score=58.19 Aligned_cols=202 Identities=9% Similarity=0.057 Sum_probs=132.2
Q ss_pred cCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 177 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~ 177 (389)
..+..|+|++.+|++..+...++.|+.+++........+. + .....+|+. .++.|..+. ...+.|.+-++.. ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD--~~~~~I~v~~~dG-~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWAD--TGTNRIEVSKLDG-QH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS-TT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEE--CCCCEEEEEecCC-Cc
Confidence 4567899995577878888889999999985443333333 2 457889998 567776663 3447899989754 43
Q ss_pred EEEEe-ecCCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcE-EEEEc-CCeEE
Q 016446 178 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVA 252 (389)
Q Consensus 178 l~tl~-~~~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~-laS~s-D~tIk 252 (389)
.+++. .....-..|++. |..+.|..+. ....|...++...+. +++...-.++..+++.|+++. ..+-. .+.|.
T Consensus 114 ~~~l~~~~l~~P~~iavd-p~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALD-PAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp CEEEECSSCCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccEEEc-cCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 44443 333445788887 5566666654 367888888854443 333345678999999997554 44445 88999
Q ss_pred EEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 253 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 253 lWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
..|++|.-.+.+.+.. .+ -..+++.. +.+.++ ... .+.|..-|..+|+....|..
T Consensus 192 ~~d~dG~~~~v~~~~l-~~----P~glav~~-~~ly~t-D~~----------~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 192 SSNMLGLNREVIADDL-PH----PFGLTQYQ-DYIYWT-DWS----------RRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp EEETTSCSCEEEEECC-SC----EEEEEEET-TEEEEE-ETT----------TTEEEEEETTTCCSCEEEEC
T ss_pred EEcCCCCceEEeeccC-CC----ceEEEEEC-CEEEEe-cCC----------CCEEEEEECCCCCceEEEec
Confidence 9999865434454332 22 36788755 344444 322 47888888778876666654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.042 Score=54.25 Aligned_cols=171 Identities=13% Similarity=0.195 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEec---CCCe--EEEEe--C--CCcEEEEEC--CCCeEEEEcc-----cCC
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ---FNEK--LLVKQ--E--NENLQILDV--RNAELMEVSR-----TEF 228 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~---~~~~--l~~~s--~--D~tIklWd~--~tg~~~~~l~-----gh~ 228 (389)
.-+.+.|+ +|+.++.++. ++.+.|..-+- .++. ++..+ . +++|+++++ .++++...-. +..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA 126 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence 46899998 8999999974 66777777531 1222 44443 4 689999966 5666433311 122
Q ss_pred -CceEEEEE--cCC-Cc-EEEEEc-CCeEEEEeC--------CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 229 -MTPSAFIF--LYE-NQ-LFLTFR-NRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 229 -~~v~sv~f--spd-g~-~laS~s-D~tIklWd~--------~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
..++.+++ +|. |+ ++.... ++.+..|++ +++++++|.--.. +..+++.|...+|..+-+|
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq------~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ------TEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC------EEEEEEETTTTEEEEEETT
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC------cceEEEcCCCCeEEEeccc
Confidence 56778888 774 54 333344 999999987 1367888874322 6788899988888877554
Q ss_pred CCcccccCCCCCeEEEEeCC-----CCeEEEEec-CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE
Q 016446 295 EPEDQWMEGSAGSINVSSIL-----TGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 368 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~-----tg~~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf 368 (389)
.-|.-.|.. +++.+..+. +|- ...|..|++
T Consensus 201 -----------~GIw~~da~p~~~~~~~~v~~~~~g~l---------------------------------~aDvEGLai 236 (355)
T 3amr_A 201 -----------EAIWKFSAEPDGGSNGTVIDRADGRHL---------------------------------TRDIEGLTI 236 (355)
T ss_dssp -----------TEEEEEECSTTSCSCCEEEEEBSSSSB---------------------------------CSCEEEEEE
T ss_pred -----------ceEEEEeCCcCCCCCceEEEEecCCcc---------------------------------ccCcceEEE
Confidence 345555543 455665553 221 036788888
Q ss_pred --CCCCC-EEEEec-CCCcEEEcc
Q 016446 369 --DEERN-EIYTGN-RHGLVHVWS 388 (389)
Q Consensus 369 --Spdg~-~LaSgs-~D~tIrlW~ 388 (389)
.++|+ +|+..| .+.+..++|
T Consensus 237 ~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 237 YYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EecCCCCEEEEEEcCCCCEEEEEE
Confidence 67777 455555 677888876
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.042 Score=53.28 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=80.5
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEE--EEEe---ecCCceeEEEEEecC---CCeEEEEe-CC-----
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL--KVFY---HLLHRNKKVDFIEQF---NEKLLVKQ-EN----- 207 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l--~tl~---~~~~~~~~v~f~~~~---~~~l~~~s-~D----- 207 (389)
..-++++|.|+..|.++... +.|++++ +|+.. ..+. .....-..|+|. |+ ++.+.++. .+
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~---g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERP---GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp SCEEEEEECTTSCEEEEETT---TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSE
T ss_pred CCceEEEEcCCCeEEEEeCC---CeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCc
Confidence 35679999954345455433 6888888 56532 1111 112455889987 55 45666543 22
Q ss_pred CcEEEEECCCCe------EEEEcc---cCCCceEEEEEcCCCcEEEEEcC--------------CeEEEEeCCCcE----
Q 016446 208 ENLQILDVRNAE------LMEVSR---TEFMTPSAFIFLYENQLFLTFRN--------------RTVAVWNFRGEL---- 260 (389)
Q Consensus 208 ~tIklWd~~tg~------~~~~l~---gh~~~v~sv~fspdg~~laS~sD--------------~tIklWd~~G~~---- 260 (389)
..|..++...+. .+..+. +.......++|.|||.+.++-+| +.|.-.+.+|+.
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 678888876542 222233 22234578999999999888642 344444445621
Q ss_pred ---------EE-EeccCcCCcCCCCeeEEEECC-CCCEEEEE
Q 016446 261 ---------VT-SFEDHLLWHPDCNTNNIYITS-DQDLIISY 291 (389)
Q Consensus 261 ---------l~-tl~gh~~~~~~~~v~sv~fSp-dG~~laS~ 291 (389)
.. --.||..+ +.++|+| +|++.++-
T Consensus 185 pf~~~~~~~~~i~a~G~rnp------~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNP------QGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEE------CCCEECTTTCCEEEEE
T ss_pred cccCCCCCCccEEEEcCCCc------ccEEEECCCCCEEEEE
Confidence 11 11244443 6899999 78877764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.068 Score=52.04 Aligned_cols=138 Identities=11% Similarity=0.011 Sum_probs=82.2
Q ss_pred CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCe-EEEEEe---ecCCceeEEEEEecC---CCeEEEEeC----C---
Q 016446 142 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFY---HLLHRNKKVDFIEQF---NEKLLVKQE----N--- 207 (389)
Q Consensus 142 ~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~-~l~tl~---~~~~~~~~v~f~~~~---~~~l~~~s~----D--- 207 (389)
..-++++|.|+..|.++... +.|++++ .+|+ .+..+. ........|+|. |+ ++.|.+... +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~---g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERP---GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETT---TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCC---CEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCc
Confidence 45789999954445555433 6888887 5776 222221 112456889987 54 456665432 3
Q ss_pred -CcEEEEECCCC-------e-EEEEcc-cCCCceEEEEEcCCCcEEEEEcC--------------CeEEEEeCCCc----
Q 016446 208 -ENLQILDVRNA-------E-LMEVSR-TEFMTPSAFIFLYENQLFLTFRN--------------RTVAVWNFRGE---- 259 (389)
Q Consensus 208 -~tIklWd~~tg-------~-~~~~l~-gh~~~v~sv~fspdg~~laS~sD--------------~tIklWd~~G~---- 259 (389)
..|..++...+ + ++..+. +.......++|.|||.+.++.+| +.|.-.+.+|+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777777654 1 112122 22234577999999999988643 34444444564
Q ss_pred ------EEEEeccCcCCcCCCCeeEEEECC-CCCEEEEE
Q 016446 260 ------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISY 291 (389)
Q Consensus 260 ------~l~tl~gh~~~~~~~~v~sv~fSp-dG~~laS~ 291 (389)
.+. -.||..+ +.++|+| +|++.++-
T Consensus 184 npf~~~~i~-a~G~rnp------~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHRNP------QGIDWHRASGVMVATE 215 (354)
T ss_dssp SSSTTCCEE-EECCSCC------CEEEECTTTCCEEEEE
T ss_pred CCCCCCcEE-EEccCCc------ceEEEeCCCCCEEEEe
Confidence 122 2356554 7999999 78877764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.11 Score=52.64 Aligned_cols=60 Identities=7% Similarity=0.145 Sum_probs=42.4
Q ss_pred cccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec--------CCcEEEEEEcC----CceEEEEe
Q 016446 99 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--------DKHVQEIKISP----GIMLLIFN 159 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~--------~~~V~~vafS~----g~~la~~~ 159 (389)
.+.+|+.++|. |||+++++--..+.|++.+..+|+. +..+. ......|+|+| +..|..+.
T Consensus 25 ~l~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 25 NLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 45688899998 9999999765555788888766663 33442 24577999996 66665543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.49 Score=46.42 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=83.0
Q ss_pred CCeeEEEEEcCC--CeEE-EEEee-----cCCceeEEEEEec-CCC-eEEEE-e--CCCcEEEEECCCC--e--EEEEcc
Q 016446 163 SHVPLKILSIED--GTVL-KVFYH-----LLHRNKKVDFIEQ-FNE-KLLVK-Q--ENENLQILDVRNA--E--LMEVSR 225 (389)
Q Consensus 163 ~d~tiklWd~~t--G~~l-~tl~~-----~~~~~~~v~f~~~-~~~-~l~~~-s--~D~tIklWd~~tg--~--~~~~l~ 225 (389)
.++.|-++|..+ ++.. ..+++ ..-+-..+.+.+. ++. +|.+. . .+.+|.||++..+ . .+.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 356788888763 3321 12222 1113355555431 332 45443 2 4789999887643 2 244444
Q ss_pred cC-CCceEEEEEcCCCcEEEEEc----C------------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 226 TE-FMTPSAFIFLYENQLFLTFR----N------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 226 gh-~~~v~sv~fspdg~~laS~s----D------------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
+. ...++.+++.|+|++.++.. | .+=+||-++ +++...+.+-.. -+.++|||||++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~------pNGia~spDg~~ 234 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDF------ANGINISPDGKY 234 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESS------EEEEEECTTSSE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcc------cCcceECCCCCE
Confidence 43 34689999999999888753 2 234667665 554433333222 389999999998
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCC-CCe
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSIL-TGK 317 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~-tg~ 317 (389)
|..+... .+.|..+|+. +|+
T Consensus 235 lYvadt~----------~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 235 VYIAELL----------AHKIHVYEKHANWT 255 (355)
T ss_dssp EEEEEGG----------GTEEEEEEECTTSC
T ss_pred EEEEeCC----------CCeEEEEEECCCCc
Confidence 8766432 4789999985 344
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.55 Score=46.11 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=109.9
Q ss_pred CceeEEEecCCCeEEEEec------------CCCeEEEEeCCC--CeE-EEEecC-------CcEEEEEEc---CCc-eE
Q 016446 102 WPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKN--YTM-LYSISD-------KHVQEIKIS---PGI-ML 155 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s------------~D~tiklWdl~~--g~~-l~tl~~-------~~V~~vafS---~g~-~l 155 (389)
.+..++.. |+|..+++++ .+|.|-++|+++ ++. ...+.+ -.-..+.+. +|. +|
T Consensus 51 G~EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45678887 7998877763 689999999873 332 122222 245666664 343 45
Q ss_pred EEEecCCCCeeEEEEEcCCC-e---EEEEEeec-CCceeEEEEEecCCCeEEEEe---CC------------CcEEEEEC
Q 016446 156 LIFNRSSSHVPLKILSIEDG-T---VLKVFYHL-LHRNKKVDFIEQFNEKLLVKQ---EN------------ENLQILDV 215 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG-~---~l~tl~~~-~~~~~~v~f~~~~~~~l~~~s---~D------------~tIklWd~ 215 (389)
.+......+.+|.||++..+ . .+.++.+. ....+.+.+. +++...++.. .| .+=+||-+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 55555545679999887653 2 23344421 1234788886 4444444332 11 23455555
Q ss_pred CCCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--CcE--EEEeccCcCCcCCCCeeEEEECC-CCCEE
Q 016446 216 RNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITS-DQDLI 288 (389)
Q Consensus 216 ~tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G~~--l~tl~gh~~~~~~~~v~sv~fSp-dG~~l 288 (389)
..+++... ...-...+.++|||||+.|.-+ + .+.|..++++ |++ .+.+. ... .--.+++.+ +|.+.
T Consensus 209 d~~~~~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g----~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 209 SPNDVRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDT----LVDNISVDPVTGDLW 281 (355)
T ss_dssp CTTCCEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSS----EEEEEEECTTTCCEE
T ss_pred ECCeEEEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCC----CCceEEEeCCCCcEE
Confidence 44554433 3344578999999999766555 5 8899999985 654 23442 111 136799999 59998
Q ss_pred EEEec
Q 016446 289 ISYCK 293 (389)
Q Consensus 289 aS~s~ 293 (389)
+++..
T Consensus 282 va~~~ 286 (355)
T 3sre_A 282 VGCHP 286 (355)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 87643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.37 Score=47.09 Aligned_cols=169 Identities=9% Similarity=0.120 Sum_probs=97.3
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE-EecC--------CcEEEEEE---c-CCceEEEEecCCCCeeEE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISD--------KHVQEIKI---S-PGIMLLIFNRSSSHVPLK 168 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~-tl~~--------~~V~~vaf---S-~g~~la~~~~~s~d~tik 168 (389)
+|.+++|++.+|++++|.-..++|-.||...+.... .+.+ ..+..|.+ - +|.++++.....
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~------ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK------ 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT------
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc------
Confidence 567899985689999988899999999987564322 2222 02456666 2 333333221000
Q ss_pred EEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCeEEEE--ccc-----------CCCceE
Q 016446 169 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEV--SRT-----------EFMTPS 232 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~---tg~~~~~--l~g-----------h~~~v~ 232 (389)
+|... +.. -+.+.-+..+|+. +|+.+.. |.+ -.....
T Consensus 88 -----------------------af~~~-g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 88 -----------------------SFNFA-DQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp -----------------------TTCTT-SCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred -----------------------ccccc-ccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 00000 000 0124445555555 4544322 111 112477
Q ss_pred EEEEcCCCcEEEEEc-C-CeEEEEeCCCcEEEEecc-CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 233 AFIFLYENQLFLTFR-N-RTVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 233 sv~fspdg~~laS~s-D-~tIklWd~~G~~l~tl~g-h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
.++.-++|+.-++++ - +.|-..+.+|+.+..+-- .......+..+.++++|||++|+... + .+.+.
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~----------~-~g~L~ 209 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG----------G-PRALT 209 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES----------S-SSSEE
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc----------C-CCeEE
Confidence 888999999988888 6 776666666775544321 11111112357999999999988763 2 57888
Q ss_pred EEeCC
Q 016446 310 VSSIL 314 (389)
Q Consensus 310 lWd~~ 314 (389)
-.|+.
T Consensus 210 ~fD~~ 214 (334)
T 2p9w_A 210 AFDVS 214 (334)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 88876
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.28 Score=48.00 Aligned_cols=157 Identities=10% Similarity=0.112 Sum_probs=96.2
Q ss_pred eEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEE-ccc----C--CCceEEEEE---cCCCcEEEEEc----------
Q 016446 189 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRT----E--FMTPSAFIF---LYENQLFLTFR---------- 247 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~-l~g----h--~~~v~sv~f---spdg~~laS~s---------- 247 (389)
..++|. +..+.+..++ ..++|-.||...+....+ +.+ . ...+..+.+ -|+|++++...
T Consensus 16 E~~~wd-~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYD-RTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEE-TTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCc-CCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 345554 3356777776 899999999987755444 322 1 124688999 58899998532
Q ss_pred ----CCeEEEEeCC----CcEEE--EeccCcCC-------cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 248 ----NRTVAVWNFR----GELVT--SFEDHLLW-------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 248 ----D~tIklWd~~----G~~l~--tl~gh~~~-------~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
+..+..+|+. |+.+. .|.+.... .. ...+.+++.|+|+.-++++.. - +.|-.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~-~~~nDvavD~~GnaYVt~s~~---------~-~~I~r 163 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP-FGVVQSAQDRDGNSYVAFALG---------M-PAIAR 163 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC-EEEEEEEECTTSCEEEEEEES---------S-CEEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc-cCCceeEECCCCCEEEeCCCC---------C-CeEEE
Confidence 5778899987 77653 33322110 00 015899999999999998752 0 35555
Q ss_pred EeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEE
Q 016446 311 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 386 (389)
Q Consensus 311 Wd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrl 386 (389)
.| ..|+.+..+.-... + . ...-..+.++|+|||++|+....++.+--
T Consensus 164 V~-pdG~~~~~~~~~~~--~---------~-----------------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 164 VS-ADGKTVSTFAWESG--N---------G-----------------GQRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp EC-TTSCCEEEEEECCC--C---------S-----------------SSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred Ee-CCCCEEeeeeecCC--C---------c-----------------ccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 55 33554443321110 0 0 00024567899999998888876776543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.078 Score=52.09 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCC----CCEEEEEe
Q 016446 221 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYC 292 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpd----G~~laS~s 292 (389)
++++...-...+.++|.|||+++++-. .|.|++.+.+ |+. +..+.. ...........|+|+|| |.+.++++
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~-v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG-VSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT-CCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc-eeecCCCCceeeEeccccccCCEEEEEEe
Confidence 444555566889999999999999998 9999999875 653 222210 00000112589999995 77777765
Q ss_pred c
Q 016446 293 K 293 (389)
Q Consensus 293 ~ 293 (389)
.
T Consensus 103 ~ 103 (347)
T 3das_A 103 S 103 (347)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.75 Score=42.23 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=99.3
Q ss_pred CCeEEEEec-CC-----CeEEEEeCCCCeEE--EEecCC-cEEEEEEcCCceEEEEecCCC--CeeEEEEEcCCCe----
Q 016446 112 NGKVLTYSA-QD-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGT---- 176 (389)
Q Consensus 112 dG~~Las~s-~D-----~tiklWdl~~g~~l--~tl~~~-~V~~vafS~g~~la~~~~~s~--d~tiklWd~~tG~---- 176 (389)
++++++.|+ .+ ..+..+|+.+.+-. ..++.. .-.+++..++.+++.+...+. -..+.++|+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 466666666 32 36778888777622 222221 112233335666665543211 1468899988865
Q ss_pred -EEEEEeecCCce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc
Q 016446 177 -VLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 177 -~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s 247 (389)
.+..++ ..+. ..+.. .++..++.|+.+ ..+.++|+.+.+-.+.- ......-..+ ..++++++-|+
T Consensus 94 ~~~~~~p--~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG 167 (301)
T 2vpj_A 94 YSVAPMN--VRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLGG 167 (301)
T ss_dssp EEECCCS--SCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEECC
T ss_pred EECCCCC--CCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEECC
Confidence 232222 1222 22222 234555556533 46889999887754432 1111111222 23788888775
Q ss_pred -C-----CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 248 -N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 248 -D-----~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+ ..+..+|.....-..+..-..+ -..-..+. -++++++.|+.+. ...-..|.++|+.+.+-.
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATK--RSGAGVAL--LNDHIYVVGGFDG------TAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEE--ETTEEEEECCBCS------SSBCCCEEEEETTTTEEE
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcc--cccceEEE--ECCEEEEEeCCCC------CcccceEEEEeCCCCcEE
Confidence 4 4688889863333333211111 01112233 3788888887652 111357899999887653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.28 Score=49.51 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=46.8
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEcC-CeEEEEeCC-CcE--EEEeccCcC-CcCCCCeeEEEECC----CCCEEEEE
Q 016446 221 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR-GEL--VTSFEDHLL-WHPDCNTNNIYITS----DQDLIISY 291 (389)
Q Consensus 221 ~~~l~gh~~~v~sv~fspdg~~laS~sD-~tIklWd~~-G~~--l~tl~gh~~-~~~~~~v~sv~fSp----dG~~laS~ 291 (389)
++++...-...+.++|.|||+++++-.. +.|++.+.. |+. +..+..-.. ..-......|+|+| +|.+.++.
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3444344457899999999999999885 578888875 653 333432100 00012257999999 67777776
Q ss_pred ec
Q 016446 292 CK 293 (389)
Q Consensus 292 s~ 293 (389)
+.
T Consensus 99 s~ 100 (454)
T 1cru_A 99 TF 100 (454)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.32 Score=49.44 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=48.3
Q ss_pred EEEEcccCCCceEEEEEcCCCc--EEEEEcCCeEEEEeCCCcE----EEEeccCcCC----cCCCCeeEEEECCC----C
Q 016446 220 LMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFRGEL----VTSFEDHLLW----HPDCNTNNIYITSD----Q 285 (389)
Q Consensus 220 ~~~~l~gh~~~v~sv~fspdg~--~laS~sD~tIklWd~~G~~----l~tl~gh~~~----~~~~~v~sv~fSpd----G 285 (389)
+++++...-...++++|.|||+ +|++-..|.|++++.+|.. +..+..-... .....+..|+|+|| |
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 3344443445789999999995 8888779999999876542 2222210000 00113688999997 8
Q ss_pred CEEEEEecC
Q 016446 286 DLIISYCKA 294 (389)
Q Consensus 286 ~~laS~s~D 294 (389)
.+.++++.+
T Consensus 85 ~lYv~yt~~ 93 (463)
T 2wg3_C 85 KLYVSYTTN 93 (463)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeCC
Confidence 888888753
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.17 E-value=2.2 Score=40.42 Aligned_cols=224 Identities=11% Similarity=0.049 Sum_probs=120.8
Q ss_pred eeccEEEEEec--CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCccee-----eeeeeEeEe
Q 016446 11 AARDIVFALAH--SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK-----CRSTKIEYI 83 (389)
Q Consensus 11 ~~~~~~a~~~~--~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~-----~~~~~l~~i 83 (389)
+.++.|.-... ++.+-..+.+ |.....|.. +. +-.++|+|+.|.-+....+.+ ..+. -+.++..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~-~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKI-TSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE---EE--EEEEEECSSEEEEEEECC-------CCSSCCSEEEEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcc-cccceeccCCCeEEEEeC
Confidence 34555555542 3444444443 655555553 22 357799999999875422111 0000 134444443
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec--CCCeEEEEeCC-CCeEEEEecCCcEEEEEEc-CCceEEEEe
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLK-NYTMLYSISDKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~-~g~~l~tl~~~~V~~vafS-~g~~la~~~ 159 (389)
..++ ...| . .-...+|+ |+|+.|+-.. .++.-+|+-+. +|.....+..+.+ .+|+ +|+.|.-++
T Consensus 96 dg~~---~~~l-~-----~~~~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 NGHG---STVL-D-----PDPCIYAS-LIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp TSCC---CEEE-E-----CSCEEEEE-EETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred CCCc---ceEe-e-----cCCccEEE-EeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 3332 1222 1 11234787 7888888765 34444444432 4554455554433 5667 588887664
Q ss_pred cCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCeEEEEcccCCCceEEEEEc
Q 016446 160 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFL 237 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D--~tIklWd~~tg~~~~~l~gh~~~v~sv~fs 237 (389)
. ...+|..-++.++...+.+. +... ..+. |+++.|.-...+ ..|..=++..++ .+.|.... + -.|+
T Consensus 164 ~--g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~-P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~~--~--~~~~ 231 (302)
T 3s25_A 164 P--KNGQLYRYDTASQSEALFYD---CNCY-KPVV-LDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTEAN--I--EHYN 231 (302)
T ss_dssp T--TTCCEEEEETTTTEEEEEEC---SCEE-EEEE-EETTEEEEEEGGGTTEEEEECSSSCC-CEECSCSC--E--EEEE
T ss_pred C--CCceEEEEECCCCCEEEEeC---CCcc-ceee-ecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeCCC--c--ceEE
Confidence 3 45788888887766544443 2232 2355 778888877533 456666776555 34444322 2 2388
Q ss_pred CCCcEEEEEc---CCeEEEEeCCCcEEEEec
Q 016446 238 YENQLFLTFR---NRTVAVWNFRGELVTSFE 265 (389)
Q Consensus 238 pdg~~laS~s---D~tIklWd~~G~~l~tl~ 265 (389)
|+|+.|.-++ ...|..=+++|.-.+.|.
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGTGFKELA 262 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred ECCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence 8998887553 345555566776545554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.87 E-value=2.7 Score=42.52 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=87.3
Q ss_pred CCCcEEEEECCCCeEEEEcccC----CCceEEEEEcCCCcEEEEEcCCeEEEEeCC-Cc------------EEEEeccCc
Q 016446 206 ENENLQILDVRNAELMEVSRTE----FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE------------LVTSFEDHL 268 (389)
Q Consensus 206 ~D~tIklWd~~tg~~~~~l~gh----~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~------------~l~tl~gh~ 268 (389)
.++.||.=++..+.--+.|+-- ...+..+..||+|++||-.++.+|.|=.+- +. ..+++.=..
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 3477777777644334443332 336788999999999999999999998874 32 122332110
Q ss_pred CCc-CCCCeeEEEECCC---CCEEEEEecCCCcccccCCCCCeEEEEeCCCCe--EEEEecCCCCCCCcccccCCCCCCC
Q 016446 269 LWH-PDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKINATNCSPKVDDELGSSSTGK 342 (389)
Q Consensus 269 ~~~-~~~~v~sv~fSpd---G~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~--~l~tl~gH~~~~~~~~~~~~~~~~~ 342 (389)
..+ +...|..|.|+|- |..|+.=-. |++||+||+.... .. +|+-... .++.+.
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLts-----------D~~Ir~yDl~~s~~~P~-~L~k~~~------~fg~d~--- 177 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKE-----------DDTITMFDILNSQEKPI-VLNKPNN------SFGLDA--- 177 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEET-----------TSCEEEEETTCTTSCCE-EESCCCS------EEESCS---
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEec-----------CCEEEEEEcccCCCCCc-chhcccc------ccCCCc---
Confidence 000 0012899999995 445665444 5899999997522 22 4542110 000000
Q ss_pred ccccccccceecccccccCCEEEEEECCCCCEEEEec--CCCcE
Q 016446 343 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLV 384 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs--~D~tI 384 (389)
....|.+++|+++|=+|+..+ +.|-|
T Consensus 178 ----------------~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 178 ----------------RVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp ----------------SCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred ----------------ccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 014789999999999999855 77776
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.09 E-value=8.7 Score=43.33 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=86.6
Q ss_pred EEEecCCCeEEEEec----------CCCeEEEEeCCCCeEEEEec---CCcEEEEEEcCCceEEEEecCCCCeeEEEEEc
Q 016446 106 VEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 106 v~Fs~pdG~~Las~s----------~D~tiklWdl~~g~~l~tl~---~~~V~~vafS~g~~la~~~~~s~d~tiklWd~ 172 (389)
+.|......+|+-|. ..|-|.+.++.++++....+ .+.|.+++-=.|..| ++. + ++|++|++
T Consensus 837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Ll-a~i-g---~~l~vy~l 911 (1158)
T 3ei3_A 837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLL-ASI-N---STVRLYEW 911 (1158)
T ss_dssp ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEE-EEE-T---TEEEEEEE
T ss_pred EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEE-EEc-C---CEEEEEEC
Confidence 566422246777654 34678899887555322222 467888764456544 442 2 58999999
Q ss_pred CCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEE--EECCCCeEEEEcc-cCCCceEEEEEcCCCcEEEEEcCC
Q 016446 173 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI--LDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRNR 249 (389)
Q Consensus 173 ~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIkl--Wd~~tg~~~~~l~-gh~~~v~sv~fspdg~~laS~sD~ 249 (389)
...+.|+.-..+..++..+... ..++++++|-.-+.|.+ |+...+++...-+ -+..++.++.|..+..++++-.+|
T Consensus 912 ~~~~~L~~~~~~~~~i~~~~l~-~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~g 990 (1158)
T 3ei3_A 912 TTEKELRTECNHYNNIMALYLK-TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF 990 (1158)
T ss_dssp CTTSCEEEEEEECCCSCEEEEE-EETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTS
T ss_pred CCCceEEEEeeccccEEEEEEe-ccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCC
Confidence 8766565211112223322222 23788888875555554 5665666555433 356689999999887666544588
Q ss_pred eEEEEeC
Q 016446 250 TVAVWNF 256 (389)
Q Consensus 250 tIklWd~ 256 (389)
.|.+...
T Consensus 991 Nl~vl~~ 997 (1158)
T 3ei3_A 991 NLFVCQK 997 (1158)
T ss_dssp EEEEEEE
T ss_pred cEEEEec
Confidence 8887764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=3.6 Score=37.62 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=102.3
Q ss_pred CCeEEEEecCC-----CeEEEEeCCCCeE--EEEecCC-cEEEEEEcCCceEEEEecCCCC--eeEEEEEcCCCeEEEEE
Q 016446 112 NGKVLTYSAQD-----SIYKVFDLKNYTM--LYSISDK-HVQEIKISPGIMLLIFNRSSSH--VPLKILSIEDGTVLKVF 181 (389)
Q Consensus 112 dG~~Las~s~D-----~tiklWdl~~g~~--l~tl~~~-~V~~vafS~g~~la~~~~~s~d--~tiklWd~~tG~~l~tl 181 (389)
++++++.|+.+ ..+.++|+.+.+- +..++.. .-.+++.-++.+++.+..+... ..+..+|+.+.+-...-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 68888888855 3578888877762 2222221 1112222366666666543322 36778898887644321
Q ss_pred eecCCce-eEEEEEecCCCeEEEEeC-------CCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-C--
Q 016446 182 YHLLHRN-KKVDFIEQFNEKLLVKQE-------NENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N-- 248 (389)
Q Consensus 182 ~~~~~~~-~~v~f~~~~~~~l~~~s~-------D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D-- 248 (389)
.-...+. ..++. .++..++.|+. -..+.++|+.+.+-.+.- .........+ ..++++++.|+ +
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGP 216 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSS
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCC
Confidence 1111111 22222 23445555653 246889999988765432 1111111222 23788888876 4
Q ss_pred ---CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 249 ---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 249 ---~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
..+.++|.+...-..+.....+. ..-..+ .-++++++.|+.+. ...-..|.++|+.+.+-
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~~~~r--~~~~~~--~~~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADMNMCR--RNAGVC--AVNGLLYVVGGDDG------SCNLASVEYYNPTTDKW 279 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCC--BSCEEE--EETTEEEEECCBCS------SSBCCCEEEEETTTTEE
T ss_pred cccceEEEEeCCCCCEeeCCCCCCcc--ccCeEE--EECCEEEEECCcCC------CcccccEEEEcCCCCeE
Confidence 36888998743333343221111 111222 23888888887642 01124689999887764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.73 E-value=4.7 Score=38.11 Aligned_cols=160 Identities=8% Similarity=-0.005 Sum_probs=98.6
Q ss_pred cCCCeEEEEecCC--------------CeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEe-cCCCCeeEEEEEcC
Q 016446 110 DVNGKVLTYSAQD--------------SIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFN-RSSSHVPLKILSIE 173 (389)
Q Consensus 110 ~pdG~~Las~s~D--------------~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~-~~s~d~tiklWd~~ 173 (389)
.|+|..|..++.. ..|+.-++..++ ...+...... +|+ +|++|+-+. .......|..-++.
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~-~~~l~~~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d 137 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG-STVLDPDPCI--YASLIGNYIYYLHYDTQTATSLYRIRID 137 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC-CEEEECSCEE--EEEEETTEEEEEEESSSSCEEEEEEETT
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc-ceEeecCCcc--EEEEeCCEEEEEeecCCCCceEEEEECC
Confidence 4788888887653 356666765444 2233333322 566 688888764 12344677777875
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc--CC-
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR- 249 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~- 249 (389)
|.....|..+ .. .+|. ++++.|.-.+. ..+|..-++..+.....+++. . ..++.|+|+.|+=.. ++
T Consensus 138 -Gs~~~~lt~~--~~--~~~~-~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~---~-~~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 138 -GEEKKKIKNH--YL--FTCN-TSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN---C-YKPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp -SCCCEEEESS--CC--CCSE-EETTEEEEECTTTCCEEEEETTTTEEEEEECSC---E-EEEEEEETTEEEEEEGGGTT
T ss_pred -CCCeEEEeCC--Cc--eEee-EECCEEEEEeCCCceEEEEECCCCCEEEEeCCC---c-cceeeecCCEEEEEEcCCCc
Confidence 4555666543 22 3454 66888887764 788888898877765554432 2 234679888887553 33
Q ss_pred eEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 250 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 250 tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.|..=+++|.-.+.|.... + ..|+|+|++|.-+
T Consensus 208 ~I~~~~ldG~~~~~Lt~~~-------~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 208 AIVHVNINNPNPVVLTEAN-------I--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEECSSSCCCEECSCSC-------E--EEEEEETTEEEEE
T ss_pred EEEEEECCCCCeEEEeCCC-------c--ceEEECCCEEEEE
Confidence 4555556776666665322 2 3488999999754
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.11 E-value=6.4 Score=37.72 Aligned_cols=233 Identities=9% Similarity=0.071 Sum_probs=117.6
Q ss_pred EEEEEee--ccEEEEEecCceEEEEecccceee---eeee---cCCcceEEEEEEeeC----CCEEEEEEEeecCCCcce
Q 016446 6 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFLN---VSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSL 73 (389)
Q Consensus 6 v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l---~tl~---~~~~~~v~sv~~spd----g~~l~s~s~~~~~d~~~l 73 (389)
-..|.|. |..|.++...|.|++++.+ |+.. ..+. .........|+|+|| |...++-+.....+ .
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g---~ 95 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG---K 95 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS---C
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC---C
Confidence 3567777 4426666778999999864 5532 2121 111245689999995 54444422211111 0
Q ss_pred eeeeeeEeEeccC--CCCCcceeEeee-----cccCceeEEEecCCCeEEEEecCC-------------CeEEEEeCCCC
Q 016446 74 KCRSTKIEYIRRG--KPDSGFALFESE-----SLKWPGFVEFDDVNGKVLTYSAQD-------------SIYKVFDLKNY 133 (389)
Q Consensus 74 ~~~~~~l~~i~~g--~~~~~~~l~~~~-----~~~~~~~v~Fs~pdG~~Las~s~D-------------~tiklWdl~~g 133 (389)
.-..+.-+++..+ ++.....++... ...++..++|+ |||.+.++-+.. +.|.-.+. +|
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~-dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD-QG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET-TS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEEEEECC-CC
Confidence 0012222222211 221122233311 11124579998 899887775432 34555554 33
Q ss_pred e---------------EEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCe---------------------
Q 016446 134 T---------------MLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT--------------------- 176 (389)
Q Consensus 134 ~---------------~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~--------------------- 176 (389)
+ .++..-....+.++|.| ...|.++... .+..=+|.-+..|.
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 2 23333234578999996 5666555433 11111222222211
Q ss_pred ----------EEEEEeecCCceeEEEEEec-----CCCeEEEEe-CCCcEEEEECCCCeEEE---EcccCCCceEEEEEc
Q 016446 177 ----------VLKVFYHLLHRNKKVDFIEQ-----FNEKLLVKQ-ENENLQILDVRNAELME---VSRTEFMTPSAFIFL 237 (389)
Q Consensus 177 ----------~l~tl~~~~~~~~~v~f~~~-----~~~~l~~~s-~D~tIklWd~~tg~~~~---~l~gh~~~v~sv~fs 237 (389)
.+..+..| .....++|..- ..+.++.+. ..+.|...++..++... .+.+-...+..|++.
T Consensus 253 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred cCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 11122211 12345666421 124555554 77888888887665432 233444589999999
Q ss_pred CCCcEEEEE
Q 016446 238 YENQLFLTF 246 (389)
Q Consensus 238 pdg~~laS~ 246 (389)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999988764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.97 E-value=5.4 Score=36.50 Aligned_cols=195 Identities=7% Similarity=-0.002 Sum_probs=97.6
Q ss_pred CeEEEEecC--CCeEEEEeCCCCeEE--EEecCCc-EEEEEEcCCceEEEEecC-CCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 113 GKVLTYSAQ--DSIYKVFDLKNYTML--YSISDKH-VQEIKISPGIMLLIFNRS-SSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 113 G~~Las~s~--D~tiklWdl~~g~~l--~tl~~~~-V~~vafS~g~~la~~~~~-s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
+.+++.|+. ...+.++|..+.+-. ..+.... =.+++.-++.+++.+... ..-..+..+|+.+++-...-.-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 445555554 357778888777622 2222111 112222356666555322 1124678899988764433221112
Q ss_pred ceeEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C---------Ce
Q 016446 187 RNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RT 250 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D------~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D---------~t 250 (389)
+....+.. .++..++.|+.+ ..+.++|..+.+-.+...-........+...++++++.|+ + ..
T Consensus 92 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 170 (306)
T 3ii7_A 92 RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170 (306)
T ss_dssp CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccce
Confidence 22212222 334555567654 5689999998876554211111111111223778877775 2 34
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
+..+|.....-..+..-..+. ..-..+.+ ++++++.|+.+.. ..-..+.++|+.+.+-
T Consensus 171 ~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 171 CEVYDPATETWTELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGL------GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEEEETTTTEEEEECCCSSCC--BSCEEEEE--TTEEEEECCEETT------EEBCCEEEEETTTTEE
T ss_pred EEEeCCCCCeEEECCCccchh--hcceEEEE--CCEEEEEeCCCCC------CCCceEEEeeCCCCcE
Confidence 778898643333343211110 11122233 7888888765420 0124688999887753
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.64 E-value=16 Score=41.16 Aligned_cols=214 Identities=11% Similarity=0.085 Sum_probs=123.4
Q ss_pred CCeEEEEeCCCCe--EEEEec-CCcEEEEEEcC-CceEEEEecCC-----------------------------------
Q 016446 122 DSIYKVFDLKNYT--MLYSIS-DKHVQEIKISP-GIMLLIFNRSS----------------------------------- 162 (389)
Q Consensus 122 D~tiklWdl~~g~--~l~tl~-~~~V~~vafS~-g~~la~~~~~s----------------------------------- 162 (389)
++++|+-.+.+-+ .+.+++ +..++.|+++| .+.++......
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSST 793 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----
T ss_pred CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccc
Confidence 5679998875433 456666 67899999994 44433332110
Q ss_pred -----------CCeeEEEEEcCCCeEEEEEeecC-CceeEEEEEecC---CCeEEEEe----------CCCcEEEEECCC
Q 016446 163 -----------SHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQF---NEKLLVKQ----------ENENLQILDVRN 217 (389)
Q Consensus 163 -----------~d~tiklWd~~tG~~l~tl~~~~-~~~~~v~f~~~~---~~~l~~~s----------~D~tIklWd~~t 217 (389)
.-..|+|.|-.+.+.+.+++... ..+.+++..... ..+++.|. ..|.|.++++..
T Consensus 794 ~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~ 873 (1158)
T 3ei3_A 794 APHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD 873 (1158)
T ss_dssp ------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET
T ss_pred cCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC
Confidence 01368999999999888776322 233555543222 35777764 137799999975
Q ss_pred CeEEEEc-ccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCC
Q 016446 218 AELMEVS-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 295 (389)
Q Consensus 218 g~~~~~l-~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~ 295 (389)
+++.... ....+.|.+++=- +|+ |+.+-.++|++|++. .+.++ ++...-.. |..+.....|.+|+.|..-
T Consensus 874 ~kL~lv~~~~v~g~v~al~~~-~g~-Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~----i~~~~l~~~~~~I~vgD~~- 945 (1158)
T 3ei3_A 874 GKLQTVAEKEVKGAVYSMVEF-NGK-LLASINSTVRLYEWTTEKELR-TECNHYNN----IMALYLKTKGDFILVGDLM- 945 (1158)
T ss_dssp TEEEEEEEEEESSCEEEEEEE-TTE-EEEEETTEEEEEEECTTSCEE-EEEEECCC----SCEEEEEEETTEEEEEESS-
T ss_pred CEEEEEEEEEcCCcCEEEeee-CCE-EEEEcCCEEEEEECCCCceEE-EEeecccc----EEEEEEeccCCEEEEEEhh-
Confidence 5543322 2345678887532 465 444557899999996 44444 32211110 2233333457788877432
Q ss_pred CcccccCCCCCeEEE--EeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC
Q 016446 296 PEDQWMEGSAGSINV--SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 373 (389)
Q Consensus 296 ~~~~~~~s~D~tIkl--Wd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~ 373 (389)
+.|-+ |+-..+++. .+-.+.. ..+|+++.|=-++
T Consensus 946 ----------~Sv~~~~y~~~~~~L~-~~a~D~~--------------------------------~~~vta~~~ld~~- 981 (1158)
T 3ei3_A 946 ----------RSVLLLAYKPMEGNFE-EIARDFN--------------------------------PNWMSAVEILDDD- 981 (1158)
T ss_dssp ----------BCEEEEEEETTTTEEE-EEEECCS--------------------------------CBCEEEEEEEETT-
T ss_pred ----------heEEEEEEEcCCCeEE-EEEeecc--------------------------------cccEEEEEEEccC-
Confidence 34444 454434433 2222220 1488899886554
Q ss_pred EEEEecCCCcEEEc
Q 016446 374 EIYTGNRHGLVHVW 387 (389)
Q Consensus 374 ~LaSgs~D~tIrlW 387 (389)
+++.+..+|.+.+-
T Consensus 982 t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 982 NFLGAENAFNLFVC 995 (1158)
T ss_dssp EEEEEETTSEEEEE
T ss_pred cEEEEcCCCcEEEE
Confidence 66778888887764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.53 E-value=6.2 Score=36.08 Aligned_cols=195 Identities=7% Similarity=-0.035 Sum_probs=103.7
Q ss_pred CCeEEEEecCC----CeEEEEeCCCCeE--EEEecCCcE-EEEEEcCCceEEEEecC-C--CCeeEEEEEcCCCeEEEEE
Q 016446 112 NGKVLTYSAQD----SIYKVFDLKNYTM--LYSISDKHV-QEIKISPGIMLLIFNRS-S--SHVPLKILSIEDGTVLKVF 181 (389)
Q Consensus 112 dG~~Las~s~D----~tiklWdl~~g~~--l~tl~~~~V-~~vafS~g~~la~~~~~-s--~d~tiklWd~~tG~~l~tl 181 (389)
++++++.|+.+ ..+..+|+.+.+- +..++.... .+++.-++.+++.+..+ . .-..+..+|+.+.+-...-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 68888888865 6788889888763 233332111 12222266666665432 1 1246888999887643321
Q ss_pred eecCCce-eEEEEEecCCCeEEEEeC---------CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C--
Q 016446 182 YHLLHRN-KKVDFIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N-- 248 (389)
Q Consensus 182 ~~~~~~~-~~v~f~~~~~~~l~~~s~---------D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D-- 248 (389)
.-...+. ..++. .++..++.|+. -..+.++|+++.+-.+.-.-........+..-++++++-|+ +
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL 212 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC
Confidence 1111222 12222 23444555552 35688999998875544211111111112223778888775 3
Q ss_pred ---CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 249 ---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 249 ---~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
..+.++|.....-..+..-..+ -.....+.+ ++++++.|+.+. ...-..|.++|+.+.+-
T Consensus 213 ~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~i~v~GG~~~------~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 213 GGLDNVEYYDIKLNEWKMVSPMPWK--GVTVKCAAV--GSIVYVLAGFQG------VGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEBCCEEEEETTTTEEEECCCCSCC--BSCCEEEEE--TTEEEEEECBCS------SSBCCEEEEEETTTTEE
T ss_pred CCCceEEEeeCCCCcEEECCCCCCC--ccceeEEEE--CCEEEEEeCcCC------CeeeeeEEEEcCCCCeE
Confidence 4678889864333333211111 111123333 888999887652 11235789999988764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.96 E-value=7.1 Score=35.50 Aligned_cols=220 Identities=8% Similarity=0.009 Sum_probs=109.1
Q ss_pred ceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC---CCCcceeEee
Q 016446 23 GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PDSGFALFES 97 (389)
Q Consensus 23 gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~---~~~~~~l~~~ 97 (389)
..+..+|..+++ .+..+.... ...-+...+++.++. |+.+ ..-....+.++|..+++ ......+- .
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~~~~l~v~----GG~~-~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~ 101 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKR---RYVASVSLHDRIYVI----GGYD-GRSRLSSVECLDYTADEDGVWYSVAPMN-V 101 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEE----CCBC-SSCBCCCEEEEETTCCTTCCCEEECCCS-S
T ss_pred eEEEEEcCCCCeEEeCCCCChhh---ccccEEEECCEEEEE----cCCC-CCccCceEEEEECCCCCCCeeEECCCCC-C
Confidence 467788887654 222222211 111122345665555 4443 22233556677776665 31100000 0
Q ss_pred ecccCceeEEEecCCCeEEEEecCC-----CeEEEEeCCCCe--EEEEecCCc-EEEEEEcCCceEEEEecCCC--CeeE
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYT--MLYSISDKH-VQEIKISPGIMLLIFNRSSS--HVPL 167 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~D-----~tiklWdl~~g~--~l~tl~~~~-V~~vafS~g~~la~~~~~s~--d~ti 167 (389)
.... .+++. .++++++.|+.+ ..+.++|+.+.+ .+..+.... -.+++..++.+++.+..++. -..+
T Consensus 102 ~r~~--~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 102 RRGL--AGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp CCBS--CEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred Cccc--eeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceE
Confidence 0111 12333 368999888754 367888988776 233333211 12223336666665543321 2468
Q ss_pred EEEEcCCCeEEEEEeecCCce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 168 KILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 168 klWd~~tG~~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
..+|+.+++-...-.-...+. ..+.. .++..++.|+.+ ..+.++|+++.+-.+.-.-........+..-+++
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGR 255 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCE
Confidence 889988876443211111111 12222 234455556643 5789999998876554221111111112223788
Q ss_pred EEEEEc-C-----CeEEEEeCC
Q 016446 242 LFLTFR-N-----RTVAVWNFR 257 (389)
Q Consensus 242 ~laS~s-D-----~tIklWd~~ 257 (389)
+++-|+ + ..|.++|.+
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETT
T ss_pred EEEEcCcCCCcccccEEEEcCC
Confidence 888776 5 467788876
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.92 E-value=6.8 Score=36.04 Aligned_cols=193 Identities=10% Similarity=-0.003 Sum_probs=101.3
Q ss_pred CCeEEEEecC----C-----CeEEEEeCCCCeEE--EEecCC-cEEEEEEcCCceEEEEecCCC--CeeEEEEEcCCCeE
Q 016446 112 NGKVLTYSAQ----D-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTV 177 (389)
Q Consensus 112 dG~~Las~s~----D-----~tiklWdl~~g~~l--~tl~~~-~V~~vafS~g~~la~~~~~s~--d~tiklWd~~tG~~ 177 (389)
++++++.|+. + ..+.++|+.+.+-. ..+... .-.+++.-++.+++.+...+. -..+..+|+.+.+-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 6888888876 2 46778888777622 222211 111222236666665532221 13678899888664
Q ss_pred EEEEeecCCce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-C
Q 016446 178 LKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N 248 (389)
Q Consensus 178 l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D 248 (389)
...-.-...+. ..+.. .++..++.|+.+ ..+.++|+.+.+-.+.- ......-.++.+ ++++++-|+ +
T Consensus 150 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 225 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD 225 (308)
T ss_dssp EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence 33211111111 22222 234455556643 56899999887754432 111111122333 788888775 4
Q ss_pred -----CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 249 -----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 249 -----~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
..+.++|+....-..+..-..+ -..-..+. -++++++.|+.+. ...-..|.++|+++.+-
T Consensus 226 ~~~~~~~v~~yd~~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWTFVAPMKHR--RSALGITV--HQGRIYVLGGYDG------HTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSSBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEECCBCS------SCBCCEEEEEETTTTEE
T ss_pred CCCccceEEEEeCCCCcEEECCCCCCC--ccceEEEE--ECCEEEEEcCcCC------CcccceEEEEcCCCCEE
Confidence 5688999874433333311111 01112223 3788888887652 11235788999887764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.15 E-value=8.7 Score=34.97 Aligned_cols=227 Identities=10% Similarity=0.068 Sum_probs=108.8
Q ss_pred ceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecc
Q 016446 23 GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 100 (389)
Q Consensus 23 gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~ 100 (389)
..+..+|..+++ .+..+..... . .+++ .-+++.++. |+.+ ..-....+.++|..+++......+- ....
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~-~-~~~~-~~~~~lyv~----GG~~-~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~ 100 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRC-R-AGMV-YMAGLVFAV----GGFN-GSLRVRTVDSYDPVKDQWTSVANMR-DRRS 100 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCB-S-CEEE-EETTEEEEE----SCBC-SSSBCCCEEEEETTTTEEEEECCCS-SCCB
T ss_pred CcEEEEcCcCCcEeEcccCCcccc-c-ceEE-EECCEEEEE----eCcC-CCccccceEEECCCCCceeeCCCCC-cccc
Confidence 457788876554 2222222110 0 1222 236665555 5544 2233355666666555431100000 0011
Q ss_pred cCceeEEEecCCCeEEEEecCCC-----eEEEEeCCCCeEE--EEecCC-cEEEEEEcCCceEEEEecCCC----CeeEE
Q 016446 101 KWPGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSS----HVPLK 168 (389)
Q Consensus 101 ~~~~~v~Fs~pdG~~Las~s~D~-----tiklWdl~~g~~l--~tl~~~-~V~~vafS~g~~la~~~~~s~----d~tik 168 (389)
. .+++. .++++++.|+.++ .+.++|+.+.+-. ..+... .-.+++.-++.+.+.+..+.. -..+.
T Consensus 101 ~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 101 T--LGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp S--CEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEE
T ss_pred c--eEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEE
Confidence 1 12333 2688888888653 5778888777632 222211 112233336666655533222 24688
Q ss_pred EEEcCCCeEEEEEeecCCce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcE
Q 016446 169 ILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 242 (389)
Q Consensus 169 lWd~~tG~~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~ 242 (389)
.+|+.+++-...-.-...+. ..+.. .++..++.|+.+ ..+.++|+++.+-.+.-.-.......-+...++++
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 254 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLL 254 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEE
Confidence 89998875433211111111 22222 234555556643 47899999988765442111111111122337888
Q ss_pred EEEEc-CC-----eEEEEeCCCcEEEEe
Q 016446 243 FLTFR-NR-----TVAVWNFRGELVTSF 264 (389)
Q Consensus 243 laS~s-D~-----tIklWd~~G~~l~tl 264 (389)
++-|+ ++ .|.++|.+...-..+
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred EEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 88776 53 478888864433333
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=1.5 Score=40.76 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=58.4
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-------EEEcc-cCCCceEEEEEcCCCcEEEEEcCCeEEEEeC-
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 256 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-------~~~l~-gh~~~v~sv~fspdg~~laS~sD~tIklWd~- 256 (389)
+....++|. |++...++ .++.+.--+..++.. .+.-. |-. .-.++.|-|+|.+-++ +||.|.=|+.
T Consensus 41 ~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ccceeEEEC-CCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 356688998 55554444 566544445444221 11111 111 1378899999999998 8898877775
Q ss_pred -CCcE--E--EEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 257 -RGEL--V--TSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 257 -~G~~--l--~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
++.- + .+.-+...|. .+..|+|.|||.+-|..
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe
Confidence 2321 0 1222223342 37899999999999876
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.11 E-value=1.3 Score=49.00 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=32.8
Q ss_pred eeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 276 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 276 v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
+.+++.++|..+|.+-|.| +++|+||+.+|+|+.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D-----------~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLD-----------YKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETT-----------CEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECC-----------CEEEEEECCCCCeEeeec
Confidence 6778888999999998875 899999999999998864
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.52 Score=43.77 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCcEEEEEcCCeEEEEeCC-Cc--E-----EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 016446 229 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE--L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 300 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~sD~tIklWd~~-G~--~-----l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~ 300 (389)
..+..++|+|+|.+.|. +++. ||..+ .. . ..+--|...|.. -..++|.|+|.+.|+ +
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~---F~a~~fD~~G~LYav-~-------- 105 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQ---FQFLFFDPNGYLYAV-S-------- 105 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGG---CSEEEECTTSCEEEE-E--------
T ss_pred ccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccccccEeccccccc---ceEEEECCCCCEEEe-C--------
Confidence 36679999999998887 7664 66543 11 0 012222223311 268999999999998 3
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecC
Q 016446 301 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 380 (389)
Q Consensus 301 ~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~ 380 (389)
||.|.=|+-.+..+-.-|.. . ..+. .+-| +.+..|+|+|||.+.|-.
T Consensus 106 ----dG~iyr~~pP~~~~~~Wl~~-a------~~vg-------------~~gw-------~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 106 ----KDKLYKASPPQSDTDNWIAR-A------TEVG-------------SGGW-------SGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp ----TTEEEEESCCCSTTCCHHHH-S------EEEE-------------CSSG-------GGEEEEEECTTSCEEEEE--
T ss_pred ----CCEEEEeCCCcCCCCceecc-c------cEec-------------cCCC-------CceEEEEECCCceEEEEe--
Confidence 48887777432111000000 0 0000 0011 478999999999977666
Q ss_pred CCcE
Q 016446 381 HGLV 384 (389)
Q Consensus 381 D~tI 384 (389)
|+.+
T Consensus 153 dg~l 156 (236)
T 1tl2_A 153 GQQF 156 (236)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7664
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.66 E-value=11 Score=37.89 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=66.0
Q ss_pred EEEEEeecCCceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCe---EEEEcc-----c----CCCceEEEEEcCC----
Q 016446 177 VLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAE---LMEVSR-----T----EFMTPSAFIFLYE---- 239 (389)
Q Consensus 177 ~l~tl~~~~~~~~~v~f~~~~~~-~l~~~s~D~tIklWd~~tg~---~~~~l~-----g----h~~~v~sv~fspd---- 239 (389)
++.++..-...-+.++|. |++. +++++...+.|++++..... .+..+. + .......|+|+|+
T Consensus 5 ~v~~va~gL~~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEEEESSEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred EEEEeccCCCCceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 344444223455788887 6664 68888889999999754321 122111 1 2456788999996
Q ss_pred CcEEEEEc-CC----------eEEE--EeCC-C----------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 240 NQLFLTFR-NR----------TVAV--WNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 240 g~~laS~s-D~----------tIkl--Wd~~-G----------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
+.+.++-+ +. ..+| |.++ + +.|.++......|. -..|+|.|||++.++-+.
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~---g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL---GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC---EEEEEECTTSCEEEEECC
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc---CCcEeECCCCcEEEEeCC
Confidence 77776654 21 1334 4442 1 23333331111221 479999999998888654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=88.24 E-value=2.5 Score=44.35 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=64.7
Q ss_pred cEEEEECCC----CeEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-------CcE-------EEEeccCc
Q 016446 209 NLQILDVRN----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GEL-------VTSFEDHL 268 (389)
Q Consensus 209 tIklWd~~t----g~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~-------G~~-------l~tl~gh~ 268 (389)
.+++-|.+. +..+..+-.-...+..|-++|||++++.++ +.|+-+.|++ +++ +...+--.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 578888876 433222223334566688999999998886 9999999965 222 22232112
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC----------eEEEEecCCC
Q 016446 269 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----------KCLAKINATN 326 (389)
Q Consensus 269 ~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg----------~~l~tl~gH~ 326 (389)
+ -.-.+|.++|.-..|-.- |..|--||+... ..+.++.-|-
T Consensus 379 G------PlHt~Fd~~G~aYTtlfi-----------dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 G------PLHTTFDGRGNAYTTLFI-----------DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp C------EEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred c------ccEEEECCCCceEeeeee-----------cceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 2 378999999944444333 467889999764 4566665553
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=88.19 E-value=13 Score=37.64 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=75.3
Q ss_pred EEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccC--cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEE
Q 016446 234 FIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 234 v~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh--~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIkl 310 (389)
+.-..+|..+..+-++.||.-++. +.-.+.|.-. ... ..+..+..||+|++||..+. .+|.|
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f---~~i~qlvlSpsG~lLAl~g~------------~~V~V 90 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVL---DDTFHVISSTSGDLLCLFND------------NEIFV 90 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCC---CTTCEEEECTTSSEEEEECS------------SEEEE
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCccccc---CceeEEEECCCCCEEEEecC------------CeEEE
Confidence 334667777877889999998986 5555555432 222 12678999999999999764 68888
Q ss_pred EeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccc-cccceecccccccCCEEEEEECCCC---CEEEEecCCCcEEE
Q 016446 311 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN-KSSYIRSTVGEALEDITSLFYDEER---NEIYTGNRHGLVHV 386 (389)
Q Consensus 311 Wd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~svafSpdg---~~LaSgs~D~tIrl 386 (389)
=.+..+. |.. .+ ..+ ..++. ++-.+-++......+|..+.|+|-| ..|+.=-.|++||+
T Consensus 91 v~LP~~~-------~~~--~~-------~~~-~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~ 153 (452)
T 3pbp_A 91 MEVPWGY-------SNV--ED-------VSI-QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITM 153 (452)
T ss_dssp EECCTTC-------SCC--CC-------HHH-HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEE
T ss_pred EEecCcc-------ccC--cc-------ccc-ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEE
Confidence 7766332 110 00 000 00000 0000000000012589999999976 58999999999999
Q ss_pred ccC
Q 016446 387 WSN 389 (389)
Q Consensus 387 W~~ 389 (389)
||.
T Consensus 154 yDl 156 (452)
T 3pbp_A 154 FDI 156 (452)
T ss_dssp EET
T ss_pred EEc
Confidence 984
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=87.82 E-value=16 Score=33.40 Aligned_cols=236 Identities=7% Similarity=-0.039 Sum_probs=110.0
Q ss_pred cEEEEEeeccEEEEEec----CceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecC----CCccee
Q 016446 5 KVIEIVAARDIVFALAH----SGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD----NFSSLK 74 (389)
Q Consensus 5 ~v~~i~~~~~~~a~~~~----~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~----d~~~l~ 74 (389)
.-..+...+.+++.+.. -..+.++|..+++ .+..+..... . .+++ ..+++.++. |+. + ..-.
T Consensus 17 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~-~~~~-~~~~~lyv~----GG~~~~~~-~~~~ 88 (308)
T 1zgk_A 17 GSHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS-G-LAGC-VVGGLLYAV----GGRNNSPD-GNTD 88 (308)
T ss_dssp ----CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB-S-CEEE-EETTEEEEE----CCEEEETT-EEEE
T ss_pred CccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc-c-ceEE-EECCEEEEE----CCCcCCCC-CCee
Confidence 33344444555555543 2467788887554 2222222111 1 1222 236665555 443 2 2222
Q ss_pred eeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC-----CeEEEEeCCCCeEE--EEecCC-cEEE
Q 016446 75 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-HVQE 146 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D-----~tiklWdl~~g~~l--~tl~~~-~V~~ 146 (389)
...+.++|..+.+......+- ..... .+++. -+|++++.|+.+ ..+..+|+.+.+-. ..+... .-.+
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p-~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMS-VPRNR--IGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG 163 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCS-SCCBT--CEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred cceEEEECCCCCeEeECCCCC-cCccc--cEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceE
Confidence 345556665555431110000 00111 12333 268898888754 36778888776622 222211 1112
Q ss_pred EEEcCCceEEEEecCCC--CeeEEEEEcCCCeEEEEEeecCCce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCC
Q 016446 147 IKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA 218 (389)
Q Consensus 147 vafS~g~~la~~~~~s~--d~tiklWd~~tG~~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D-----~tIklWd~~tg 218 (389)
++.-++.+++.+..++. -..+..+|+.+.+-...-.-...+. ..+.. .++..++.|+.+ ..+.++|+++.
T Consensus 164 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 164 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 22226666655533322 2468889988765432211111111 22222 234455556644 67999999988
Q ss_pred eEEEEcc--cCCCceEEEEEcCCCcEEEEEc-C-----CeEEEEeCC
Q 016446 219 ELMEVSR--TEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFR 257 (389)
Q Consensus 219 ~~~~~l~--gh~~~v~sv~fspdg~~laS~s-D-----~tIklWd~~ 257 (389)
+-.+.-. ........+. -++++++-|+ + ..|.++|.+
T Consensus 242 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 7655321 1111112222 3678887775 4 356777775
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.40 E-value=6.2 Score=38.34 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=66.3
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEecCC---cEEEEE---Ec-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCc
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIK---IS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 187 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~~~---~V~~va---fS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~ 187 (389)
++.-++.||.|.-.|.++|+.+.+++.. .+.... .. ++..++ .. ...|+.+.-++.++|.....+.-. .-
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~v-v~-p~~dG~l~a~~~~~G~~~~~~~~~-~l 88 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLI-IE-PFGDGNIYYFNAHQGLQKLPLSIR-QL 88 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEE-EC-CSTTTEEEEEETTTEEEEEEEEHH-HH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEE-EE-ECCCCEEEEEECCCCcEEeeeccc-cc
Confidence 4455677888888888888887777632 111111 00 123332 21 134578888888888666554411 11
Q ss_pred e--eEEEEEe----------cCCCeEEEEeCCCcEEEEECCCCeEEEEcccC
Q 016446 188 N--KKVDFIE----------QFNEKLLVKQENENLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 188 ~--~~v~f~~----------~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh 227 (389)
+ ..+.+.. ..++.+.+++.++++---|+++|+.+..+...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1 1122100 04678889999999999999999999887543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=83.63 E-value=41 Score=34.25 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=95.9
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEE
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 245 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS 245 (389)
.|-+-|+.++.....-+ ...+-+...|....||... ..+++|.|+++.+.++...=.++-|..==.+|+- |+=
T Consensus 49 ~vvIiDl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~--l~l 121 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT--VAL 121 (494)
T ss_dssp EEEEEETTSTTSCEEEE----CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTE--EEE
T ss_pred eEEEEECCCCCcceecc----cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCe--EEE
Confidence 56666776654332211 0111222224444555554 8999999999999988765444444433335543 555
Q ss_pred EcCCeEEEEeCCC--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 246 FRNRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 246 ~sD~tIklWd~~G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
..+..|--|+++| +.++-|+-|... .+|.|-.-..+||+++++-.+-.. -.+.-.|.+-|+.++ .+.-+.|.
T Consensus 122 VT~taVyHWsi~~~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~----~~~~v~G~mQLYS~e-r~~sQ~ie 195 (494)
T 1bpo_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISA----QQNRVVGAMQLYSVD-RKVSQPIE 195 (494)
T ss_dssp ECSSEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECTTSSEEEEEEEEE----ETTEEEEEEEEEEST-TCCEEEEC
T ss_pred EcCCeeEEecccCCCCchhheecchhc-ccceEEEEEECCCCCeEEEEeecc----cCCcccceEEEeecc-ccccchhe
Confidence 5688999999975 578888888775 357788889999999998554210 001224789999977 45567889
Q ss_pred CCCC
Q 016446 324 ATNC 327 (389)
Q Consensus 324 gH~~ 327 (389)
||..
T Consensus 196 Ghaa 199 (494)
T 1bpo_A 196 GHAA 199 (494)
T ss_dssp CSEE
T ss_pred eeee
Confidence 9973
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=82.81 E-value=49 Score=34.49 Aligned_cols=255 Identities=8% Similarity=-0.010 Sum_probs=137.6
Q ss_pred ccEEEEEee-ccEEEEEecCceEEEEecccceeeeeee---cCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeee
Q 016446 4 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 79 (389)
Q Consensus 4 ~~v~~i~~~-~~~~a~~~~~gtiklW~~~tg~~l~tl~---~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~ 79 (389)
+.|.+|..- ...|=.+..+|..| +| |.....+. .-..+.|.+++-.++|...+. ..+ -+.
T Consensus 22 n~V~~I~qD~~G~lWigT~~GL~r-yD---G~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-----T~~-------Gl~ 85 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIGSNKGLFS-YD---GYSTQQHFTYGENNNTRIYCGVIIDNTYLYMG-----TDN-------GIL 85 (758)
T ss_dssp CCEEEEEECTTSCEEEEESSCEEE-EC---SSCEEECSCTTSTTSSCEEEEEEETTTEEEEE-----ETT-------EEE
T ss_pred ceEEEEEECCCCCEEEEECCCccc-cC---CCceEEEEccCCCCCceEEEEEEcCCCcEEEE-----eCC-------CeE
Confidence 457777766 44555666777664 44 32222221 111357899888888875544 122 233
Q ss_pred EeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEE------ecCCcEEEEEEc-CC
Q 016446 80 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS------ISDKHVQEIKIS-PG 152 (389)
Q Consensus 80 l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~t------l~~~~V~~vafS-~g 152 (389)
..|..++++.. . .......+..+.. .+|.+.+. +.+ -+..+|..+++...- +....|.++... +|
T Consensus 86 ~yd~~~~~f~~--~--~~~~~~~i~~i~~--~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 157 (758)
T 3ott_A 86 VYNYRADRYEQ--P--ETDFPTDVRTMAL--QGDTLWLG-ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN 157 (758)
T ss_dssp EEETTTTEECC--C--SCCCCSCEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC
T ss_pred EEeCCCCEEEC--c--ccCCCceEEEEEe--cCCcEEEE-cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC
Confidence 44544433211 0 0001112344543 36876664 344 566788877664322 224579998887 55
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC------CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEccc
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 226 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~------~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~g 226 (389)
.+.+ +.. .-+..+|..+++.. .+.... ..+.++... ..++.|-++.. +-+..+|..+++......-
T Consensus 158 ~lWi-gt~----~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l 229 (758)
T 3ott_A 158 QIYV-GTY----NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF 229 (758)
T ss_dssp CEEE-EET----TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTTEEEEEEEE
T ss_pred CEEE-EeC----CCHhhCccCCCceE-EecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCCeEEeccCC
Confidence 5554 322 23677887776643 222110 124444432 23455555554 3577889888765432211
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCeEEEEeCCCcEEEEeccCc---CCcCCCCeeEEEECCCCCEEEEE
Q 016446 227 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL---LWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 227 h~~~v~sv~fspdg~~laS~sD~tIklWd~~G~~l~tl~gh~---~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
....|.+++..++|.+.+...+ -+-+++.+...+..+.... ...+...|+++...++|.+-+..
T Consensus 230 ~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 230 HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 2346888888889998876534 4667887633333332111 11122348999999999887743
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.69 E-value=3.8 Score=45.20 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=29.3
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 139 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl 139 (389)
+++.. ++..+|.+-+.|+++|+|++.+|+|+.+.
T Consensus 240 ~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 240 SMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEeec-CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45665 67789999999999999999999999875
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=82.10 E-value=56 Score=34.67 Aligned_cols=248 Identities=8% Similarity=0.007 Sum_probs=130.3
Q ss_pred EEEE-EeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeeccc----Cc--eeEEEecCCCeEEEE--
Q 016446 48 RSLF-YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK----WP--GFVEFDDVNGKVLTY-- 118 (389)
Q Consensus 48 ~sv~-~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~----~~--~~v~Fs~pdG~~Las-- 118 (389)
..+. ++|||+.++.+...++.| -..+++.|+.+|+.... .|..+... ++ ..+++- ++...+.+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d-----~~~~~~~d~~t~~~~~~--~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~ 203 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKD-----EMFFREWDLEKKDFVKN--GFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLV 203 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCS-----EEEEEEEETTTTEECTT--CSCCBCTTCCBCCEETCCEEEE-ETTEEEECCC
T ss_pred eceeecCCCCCEEEEEeCCCCCc-----eeEEEEEECCcCCcCCC--CcccccccccccccccceeeEE-CCCEEEEEeC
Confidence 3455 899999877777777777 36678899999876321 11100000 00 112443 22233332
Q ss_pred --------ecCCCeEEEEeCCCCe----EEEEecCCcE-EEEEEc-CCc-----eEEEEecCCCCeeEEEEEcCC--CeE
Q 016446 119 --------SAQDSIYKVFDLKNYT----MLYSISDKHV-QEIKIS-PGI-----MLLIFNRSSSHVPLKILSIED--GTV 177 (389)
Q Consensus 119 --------~s~D~tiklWdl~~g~----~l~tl~~~~V-~~vafS-~g~-----~la~~~~~s~d~tiklWd~~t--G~~ 177 (389)
.+.-.+|++|.+-+.. +++.-....+ .++..+ +++ .+++.+.+-....+.+.++.. |+.
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL 283 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc
Confidence 2235789999886542 4555553332 345555 544 233332232235566666543 553
Q ss_pred EEEEeecCCceeEEEEEecCCCeEEE-E-e---------CCCcEEEEECCCCe-------EEEE-c-ccCCCceEEEEEc
Q 016446 178 LKVFYHLLHRNKKVDFIEQFNEKLLV-K-Q---------ENENLQILDVRNAE-------LMEV-S-RTEFMTPSAFIFL 237 (389)
Q Consensus 178 l~tl~~~~~~~~~v~f~~~~~~~l~~-~-s---------~D~tIklWd~~tg~-------~~~~-l-~gh~~~v~sv~fs 237 (389)
..+.. .....+... + ++.+++ . + ..+.|-..|+.++. ..+. + ......+..+++.
T Consensus 284 -~~l~~--~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 284 -QKINM--PSDATLQGS-F-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT 358 (711)
T ss_dssp -EECCS--CTTCEEEEE-E-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred -eEeec--CCcceEeee-E-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence 33321 222333222 2 445554 2 1 35678888887742 1222 3 2334477888888
Q ss_pred CCCcEEEEEc-CC--eEEEEeCC-Cc-EEEE-eccCcCCcCCCCeeEEEECCCCCE-EEEEecCCCcccccCCCCCeEEE
Q 016446 238 YENQLFLTFR-NR--TVAVWNFR-GE-LVTS-FEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINV 310 (389)
Q Consensus 238 pdg~~laS~s-D~--tIklWd~~-G~-~l~t-l~gh~~~~~~~~v~sv~fSpdG~~-laS~s~D~~~~~~~~s~D~tIkl 310 (389)
++ .++++.. |+ .+.++|+. |+ .++. +.-... +.+..+.+++++.. +++.+.. ..-.++..
T Consensus 359 ~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~----~~~~~~~~~~~~~~~~~~~ss~--------~~P~~~~~ 425 (711)
T 4hvt_A 359 KD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ----NAIFGMSSYEEEEEALITIENS--------IVPPTIYL 425 (711)
T ss_dssp SS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCST----TCEEEEECCTTCSCEEEEEECS--------SSCCEEEE
T ss_pred CC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC----eEEEEEeecCcCCEEEEEEecC--------CCCCEEEE
Confidence 77 5677776 76 46677774 64 2333 221100 12566777888754 4444432 34578888
Q ss_pred EeCCCCeEEEEec
Q 016446 311 SSILTGKCLAKIN 323 (389)
Q Consensus 311 Wd~~tg~~l~tl~ 323 (389)
.|+. |+. ..|.
T Consensus 426 ~d~~-~~~-~~l~ 436 (711)
T 4hvt_A 426 WVKT-HEL-KIIR 436 (711)
T ss_dssp ECTT-SCE-EEEE
T ss_pred EeCC-CcE-EEEe
Confidence 9976 543 3444
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.25 E-value=21 Score=33.14 Aligned_cols=198 Identities=9% Similarity=0.028 Sum_probs=98.5
Q ss_pred CCeEEEEecC-C---------CeEEEEeCCCCeE--EEEec-C--CcEEEEEEcCCceEEEEecCCC-------------
Q 016446 112 NGKVLTYSAQ-D---------SIYKVFDLKNYTM--LYSIS-D--KHVQEIKISPGIMLLIFNRSSS------------- 163 (389)
Q Consensus 112 dG~~Las~s~-D---------~tiklWdl~~g~~--l~tl~-~--~~V~~vafS~g~~la~~~~~s~------------- 163 (389)
++++.+.|+. + ..+.++|+.+.+= +..+. . ..-.+++ .++.+.+.+..+..
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcC
Confidence 6888888886 2 4678888877662 22222 1 1122222 46666666643311
Q ss_pred -----------------------CeeEEEEEcCCCeEEEEEeecCCc-e-eEEEEEecCCCeEEEEeC------CCcEEE
Q 016446 164 -----------------------HVPLKILSIEDGTVLKVFYHLLHR-N-KKVDFIEQFNEKLLVKQE------NENLQI 212 (389)
Q Consensus 164 -----------------------d~tiklWd~~tG~~l~tl~~~~~~-~-~~v~f~~~~~~~l~~~s~------D~tIkl 212 (389)
-..+..+|+.+.+-...-.-...+ . ..++. ..+..++.|+. ...+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--KGDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE--ETTEEEEECCEEETTEECCCEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE--ECCEEEEEeeecCCCcccCceEE
Confidence 147889999886644322111111 1 23333 23444555653 245677
Q ss_pred EEC--CCCeEEEEcc--cCCCceEEEEEcCCCcEEEEEc-C----------------------CeEEEEeCC-C--cEEE
Q 016446 213 LDV--RNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-N----------------------RTVAVWNFR-G--ELVT 262 (389)
Q Consensus 213 Wd~--~tg~~~~~l~--gh~~~v~sv~fspdg~~laS~s-D----------------------~tIklWd~~-G--~~l~ 262 (389)
+|+ ++.+-.+... .........+...++++++-|+ + ..+.++|++ . +.+.
T Consensus 222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~ 301 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG 301 (357)
T ss_dssp EECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE
T ss_pred EEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC
Confidence 877 5555443211 1111111123345778877775 3 257788986 3 3343
Q ss_pred EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 263 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 263 tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
.+..... ...++..++++++-|+.+.. +..-..|-+.++.+++.+..-.-
T Consensus 302 ~~p~~r~-------~~~~~~~~~~i~v~GG~~~~-----~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 302 ELSQGRA-------YGVSLPWNNSLLIIGGETAG-----GKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ECSSCCB-------SSEEEEETTEEEEEEEECGG-----GCEEEEEEEEEC-CCSCEEEC--
T ss_pred CCCCCcc-------cceeEEeCCEEEEEeeeCCC-----CCEeeeEEEEEEcCcEeEeeecc
Confidence 3332111 12233458999999987520 00013455569888887765443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=80.91 E-value=3.9 Score=42.85 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=44.5
Q ss_pred eEEEECCCCCEEEEEecCCCccc---ccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCcccccccccee
Q 016446 277 NNIYITSDQDLIISYCKAEPEDQ---WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 353 (389)
Q Consensus 277 ~sv~fSpdG~~laS~s~D~~~~~---~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
-.|+|+|+|.+++.- |....+ ...--...+-.-+..+|+..+-+.++.+
T Consensus 479 DNL~fd~~G~LwI~e--Dg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-------------------------- 530 (592)
T 3zwu_A 479 DGLGFDKAGRLWILT--DGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-------------------------- 530 (592)
T ss_dssp EEEEECTTCCEEEEE--CCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT--------------------------
T ss_pred cceEECCCCCEEEEe--cCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC--------------------------
Confidence 469999999988763 310000 0000012344456678888888888763
Q ss_pred cccccccCCEEEEEECCCCCEEEEe
Q 016446 354 STVGEALEDITSLFYDEERNEIYTG 378 (389)
Q Consensus 354 ~~~~~~~~~V~svafSpdg~~LaSg 378 (389)
..++.++|+|||++|...
T Consensus 531 -------aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 531 -------CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp -------CEEEEEEECTTSSEEEEE
T ss_pred -------ccCcCeeECCCCCEEEEE
Confidence 489999999999999765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 100.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.97 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.93 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.93 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.91 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.82 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.82 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.6 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.49 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.35 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.29 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.27 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.23 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.02 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.0 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.99 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.89 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.75 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.63 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.51 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.93 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.9 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.78 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.58 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.4 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.17 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.14 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.68 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.62 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.02 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.01 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.45 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.03 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.25 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.95 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.6 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.21 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.17 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.0 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.54 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 91.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.38 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.4 | |
| d2nt0a1 | 143 | Glucosylceramidase {Human (Homo sapiens) [TaxId: 9 | 83.08 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-48 Score=353.08 Aligned_cols=292 Identities=16% Similarity=0.267 Sum_probs=259.9
Q ss_pred EEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCcee
Q 016446 26 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF 105 (389)
Q Consensus 26 klW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~ 105 (389)
|.|... ..+..+|.||. ..|.+|+|+|+|+.|||+ +.| ..|+|||+.+|++.. .+ ..+...+.+
T Consensus 1 k~w~p~-~~~~~~L~GH~-~~I~~l~~sp~~~~l~s~----s~D------g~i~iWd~~~~~~~~---~~-~~h~~~V~~ 64 (317)
T d1vyhc1 1 KEWIPR-PPEKYALSGHR-SPVTRVIFHPVFSVMVSA----SED------ATIKVWDYETGDFER---TL-KGHTDSVQD 64 (317)
T ss_dssp CCCCCC-SSCSCEEECCS-SCEEEEEECSSSSEEEEE----ESS------SCEEEEETTTCCCCE---EE-CCCSSCEEE
T ss_pred CccCCC-CCccEEEcCCC-CCeEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCCEEE---EE-eCCCCcEEE
Confidence 467653 67778899975 899999999999999994 477 889999999998722 12 235556788
Q ss_pred EEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe
Q 016446 106 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 182 (389)
Q Consensus 106 v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~ 182 (389)
++|+ |++.+++++..++++.+|+....+....+. ...+.++.|+ ++..+++++ .|+++++||+++++++.++.
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~ 140 (317)
T d1vyhc1 65 ISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIKMWEVQTGYCVKTFT 140 (317)
T ss_dssp EEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTTCCEEEEEE
T ss_pred Eeee-cccccccccccccccccccccccccccccccccccceeeeccCCCceEEeec---cCcceeEeecccceeeeEEc
Confidence 9998 899999999999999999998888766664 5689999999 588888764 45899999999999999999
Q ss_pred ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCC--------------------cE
Q 016446 183 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--------------------QL 242 (389)
Q Consensus 183 ~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg--------------------~~ 242 (389)
+|...+..++|+ +++..+++++.|++|++||+.+++++..+.+|...+..++|+|++ .+
T Consensus 141 ~~~~~~~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (317)
T d1vyhc1 141 GHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 219 (317)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred cCCCcceeeecc-cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCce
Confidence 999999999998 778899999999999999999999999999999999999998864 46
Q ss_pred EEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 243 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 243 laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
+++++ |++|++||++ ++++.++.+|..+ |.+++|+|+|++||+|+.| |+|+|||+++++++.
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMK 283 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCE
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCCCCC-----EEEEEECCCCCEEEEEECC-----------CeEEEEECCCCcEEE
Confidence 88888 9999999997 9999999999887 8999999999999999865 999999999999999
Q ss_pred EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 321 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 321 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
+|++|+ ..|++|+|||||++||||+.||+|||||
T Consensus 284 ~~~~h~----------------------------------~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 284 TLNAHE----------------------------------HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCS----------------------------------SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEcCCC----------------------------------CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999998 5899999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-46 Score=358.40 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=243.3
Q ss_pred cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEec
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDD 110 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~ 110 (389)
..++++++ . |.+.|.+|+|||+|++||+ ++ | ..|+|||+..++.......+. ..+...+.+++|+
T Consensus 41 ~~~~~~~~-~-H~~~V~~v~fs~~g~~lat----g~-d------g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s- 106 (337)
T d1gxra_ 41 HARQINTL-N-HGEVVCAVTISNPTRHVYT----GG-K------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL- 106 (337)
T ss_dssp EEEEEEEE-C-CSSCCCEEEECSSSSEEEE----EC-B------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-
T ss_pred CceEEEEC-C-CCCcEEEEEECCCCCEEEE----EE-C------CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-
Confidence 35777777 3 4589999999999999999 44 4 578999997765422222222 2355567889998
Q ss_pred CCCeEEEEecCCCeEEEEeCCCC--eEEEEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g--~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
|||++||+|+.|++|++||+... ++...+. ...|..++|+ ++.++++++ .|++|++|++.++++......|.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC---SDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence 99999999999999999998744 4555554 4689999999 577777663 45899999999999999999999
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
..+..++|+ +++..+++++.|++|++||++++++++.+ .|...|.+++|+|++++|++++ |+.|++||++ +++. .
T Consensus 184 ~~v~~l~~s-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~ 260 (337)
T d1gxra_ 184 DGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-Q 260 (337)
T ss_dssp SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-E
T ss_pred ccccccccc-ccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccc-c
Confidence 999999998 67889999999999999999999998876 4888999999999999999998 9999999997 6654 5
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
..+|... |.+++|+|||++||+++.| ++|+|||+.+|+++.++. |.
T Consensus 261 ~~~~~~~-----i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~-~~----------------- 306 (337)
T d1gxra_ 261 LHLHESC-----VLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSK-ES----------------- 306 (337)
T ss_dssp ECCCSSC-----EEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEE-CS-----------------
T ss_pred ccccccc-----cceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEEcc-CC-----------------
Confidence 6678776 8999999999999999865 999999999999998876 54
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++++|||||++||+|+.|++|||||.
T Consensus 307 -----------------~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 307 -----------------SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----------------SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----------------CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 48999999999999999999999999983
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-46 Score=356.99 Aligned_cols=306 Identities=15% Similarity=0.204 Sum_probs=249.5
Q ss_pred EEEecCceEEEEecccceeee----eeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 17 FALAHSGVCAAFSRETNRRIC----FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 17 a~~~~~gtiklW~~~tg~~l~----tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
.....++.+.+|+....+.+. ..-+ |.+.|++|+|||||++||+ |+ | ..|+||++.+|++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-H~~~V~~l~fs~dg~~las----g~-d------~~i~iW~~~~~~~~~~~ 99 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLAT----GC-N------KTTQVYRVSDGSLVARL 99 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEE-CSSCCCEEEECTTSSEEEE----EC-B------SCEEEEETTTCCEEEEE
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCC-CCCcEEEEEECCCCCEEEE----Ee-C------CeEEEEEecccceEeee
Confidence 356778899999975444322 2223 4699999999999999988 44 4 57899999888762110
Q ss_pred e--------------eEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceE
Q 016446 93 A--------------LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIML 155 (389)
Q Consensus 93 ~--------------l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~l 155 (389)
. .....+...+.+|+|+ |||++|++|+.|++|++||..+++++..+. ...|.+++|+ ++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 178 (388)
T d1erja_ 100 SDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178 (388)
T ss_dssp CC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccCCCCCEEEEEEC-CCCCcceecccccccccccccccccccccccccccccccccccccccc
Confidence 0 0001234447789998 899999999999999999999999888775 5689999999 67777
Q ss_pred EEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-------ccCC
Q 016446 156 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEF 228 (389)
Q Consensus 156 a~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-------~gh~ 228 (389)
++++ .++.|++||++++.++.....+ .....+.|.++++..+++++.|++|++||+++++.+..+ .+|.
T Consensus 179 ~~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~ 254 (388)
T d1erja_ 179 VSGS---GDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254 (388)
T ss_dssp EEEE---TTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred cccc---cceeeeeeeccccccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC
Confidence 7764 4589999999999999888755 555677777677788888999999999999999887664 4789
Q ss_pred CceEEEEEcCCCcEEEEEc-CCeEEEEeCC-C------------cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 229 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 229 ~~v~sv~fspdg~~laS~s-D~tIklWd~~-G------------~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
..|.+++|+|+|++|++++ |++|++||+. + .+......|... |.+++|+|||++|++|+.|
T Consensus 255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce-----EEEEEECCCCCEEEEEeCC
Confidence 9999999999999999998 9999999974 3 344566677765 8999999999999999875
Q ss_pred CCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEE------E
Q 016446 295 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF------Y 368 (389)
Q Consensus 295 ~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~sva------f 368 (389)
|+|+|||+.+|+++.+|++|+ ..|.+++ |
T Consensus 330 -----------g~i~vwd~~~~~~~~~l~~H~----------------------------------~~V~~~~~~~~~~~ 364 (388)
T d1erja_ 330 -----------RGVLFWDKKSGNPLLMLQGHR----------------------------------NSVISVAVANGSSL 364 (388)
T ss_dssp -----------SEEEEEETTTCCEEEEEECCS----------------------------------SCEEEEEECSSCTT
T ss_pred -----------CEEEEEECCCCcEEEEEeCCC----------------------------------CCEEEEEEecCccc
Confidence 999999999999999999998 5788886 5
Q ss_pred CCCCCEEEEecCCCcEEEccC
Q 016446 369 DEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 369 Spdg~~LaSgs~D~tIrlW~~ 389 (389)
+|||++|||||.||+||||+.
T Consensus 365 spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 365 GPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp CTTCEEEEEEETTSEEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEee
Confidence 789999999999999999983
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-44 Score=334.56 Aligned_cols=287 Identities=12% Similarity=0.180 Sum_probs=241.6
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV 111 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~p 111 (389)
-++.++|.||. +.|++|+|+|+|++||+ ++.| ..++|||+.+++. +.. ..+...+.+++|+ |
T Consensus 45 ~~~~~tL~GH~-~~I~~l~~s~~~~~l~s----gs~D------g~v~iWd~~~~~~-----~~~~~~~~~~v~~v~~~-~ 107 (340)
T d1tbga_ 45 MRTRRTLRGHL-AKIYAMHWGTDSRLLVS----ASQD------GKLIIWDSYTTNK-----VHAIPLRSSWVMTCAYA-P 107 (340)
T ss_dssp CCEEEEECCCS-SCEEEEEECTTSSEEEE----EETT------TEEEEEETTTTEE-----EEEEECSCSCEEEEEEC-T
T ss_pred eeeeEEECCCC-CCEEEEEECCCCCEEEE----EECC------Cceeeeeccccee-----EEEEecccccEEeeEee-c
Confidence 46778999985 89999999999999999 4577 8999999998876 222 2345567889998 9
Q ss_pred CCeEEEEecCCCeEEEEeCCCCe----EEEEecC--CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYT----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~----~l~tl~~--~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
+|++|++|+.|+++++|+..... ....+.+ .........++..++... .|.+.+.|...+.........+.
T Consensus 108 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 184 (340)
T d1tbga_ 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE---TTTEEEEEETTTTEEEEEEECCS
T ss_pred cceeeeeecccceeecccccccccccccceeccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence 99999999999999999976543 3455543 345555555566665553 44789999998888888887777
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
..+....+. +.+..+++++.|++|++||+++++++.++.+|...|.+++|+|+|++|++++ |++|++||+. .+.+.+
T Consensus 185 ~~~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~ 263 (340)
T d1tbga_ 185 GDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeEeeeccc-cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc
Confidence 777777775 6678888899999999999999999999999999999999999999999998 9999999997 777777
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
+..+... ..|.+++|+|+|++|++|+.| |+|+|||+.+++++.++.+|.
T Consensus 264 ~~~~~~~---~~i~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~H~----------------- 312 (340)
T d1tbga_ 264 YSHDNII---CGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAGHD----------------- 312 (340)
T ss_dssp ECCTTCC---SCEEEEEECSSSCEEEEEETT-----------SCEEEEETTTCCEEEEECCCS-----------------
T ss_pred ccccccc---CceEEEEECCCCCEEEEEECC-----------CEEEEEECCCCcEEEEEcCCC-----------------
Confidence 7543332 238999999999999999865 999999999999999999998
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++|+|+|||++|||||.||+|||||
T Consensus 313 -----------------~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 313 -----------------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 5899999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-45 Score=352.97 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=237.8
Q ss_pred eeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE
Q 016446 37 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 116 (389)
Q Consensus 37 ~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L 116 (389)
..++..+-..+..++++|+|+.||.+ .. ..+.+|++..++. ..+|+ +|...+.+++|+ |||++|
T Consensus 10 ~~~p~~~r~~~~~~a~~~~g~~l~~~----~~-------~~v~i~~~~~~~~---~~~~~-~H~~~v~~~~~s-p~g~~l 73 (311)
T d1nr0a1 10 PSLPRTARGTAVVLGNTPAGDKIQYC----NG-------TSVYTVPVGSLTD---TEIYT-EHSHQTTVAKTS-PSGYYC 73 (311)
T ss_dssp CCCCCCCTTCCCCCEECTTSSEEEEE----ET-------TEEEEEETTCSSC---CEEEC-CCSSCEEEEEEC-TTSSEE
T ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEE----eC-------CEEEEEECCCCce---eEEEc-CCCCCEEEEEEe-CCCCeE
Confidence 33433333455678999999999884 23 4688999988765 33454 566678899998 899999
Q ss_pred EEecCCCeEEEEeCCCCeEE--EEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 117 TYSAQDSIYKVFDLKNYTML--YSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 117 as~s~D~tiklWdl~~g~~l--~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
|+|+.|++|+|||+.+++++ .+++ ...|.+|+|+ ++++|++++ ++.+.++++|+++++++++++.+|...+..|
T Consensus 74 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v 152 (311)
T d1nr0a1 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG-EGRERFGHVFLFDTGTSNGNLTGQARAMNSV 152 (311)
T ss_dssp EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE-CCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred eccccCceEeeeeeeccccccccccccccCcccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 99999999999999887643 4454 5789999999 578887764 4556889999999999999999999999999
Q ss_pred EEEecCCCe-EEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEec---
Q 016446 192 DFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--- 265 (389)
Q Consensus 192 ~f~~~~~~~-l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~--- 265 (389)
+|+ |+++. +++++.|++|++||++++++...+.+|...|.+++|+|++++|++++ |++|++||.. ++.+.+++
T Consensus 153 ~~~-~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~ 231 (311)
T d1nr0a1 153 DFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231 (311)
T ss_dssp EEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred ccc-ccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccc
Confidence 998 66665 66789999999999999999999999999999999999999999998 9999999996 88888776
Q ss_pred ----cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCC
Q 016446 266 ----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 341 (389)
Q Consensus 266 ----gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~ 341 (389)
+|..+ |.+++|||||++||+|+.| |+|||||+++++++++|+.|...
T Consensus 232 ~~~~~h~~~-----V~~~~~s~~~~~l~tgs~D-----------g~v~iwd~~t~~~~~~l~~~~~~------------- 282 (311)
T d1nr0a1 232 LKNVAHSGS-----VFGLTWSPDGTKIASASAD-----------KTIKIWNVATLKVEKTIPVGTRI------------- 282 (311)
T ss_dssp SSSCSSSSC-----EEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEEEEECCSSG-------------
T ss_pred ccccccccc-----ccccccCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEECCCCc-------------
Confidence 46655 8999999999999999865 99999999999999999988621
Q ss_pred CccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 342 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.++. |+++.|++++.||.|++||.
T Consensus 283 ------------------~~~~~~~~--~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 283 ------------------EDQQLGII--WTKQALVSISANGFINFVNP 310 (311)
T ss_dssp ------------------GGCEEEEE--ECSSCEEEEETTCCEEEEET
T ss_pred ------------------cceEEEEE--ecCCEEEEEECCCEEEEEeC
Confidence 02444444 45667999999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-44 Score=335.53 Aligned_cols=306 Identities=13% Similarity=0.127 Sum_probs=241.5
Q ss_pred EEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEecc
Q 016446 6 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 85 (389)
Q Consensus 6 v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~ 85 (389)
|.++-|.+++||+++.||+||+||..+++++++|.+|. ..|++|+|+|+ +.|++ ++.| +.+++|++..
T Consensus 16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~-~~V~~l~~s~~-~~l~s----~s~D------~~i~iw~~~~ 83 (355)
T d1nexb2 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD-GGVWALKYAHG-GILVS----GSTD------RTVRVWDIKK 83 (355)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCS-SCEEEEEEETT-TEEEE----EETT------CCEEEEETTT
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-CCEEEEEEcCC-CEEEE----Eecc------cccccccccc
Confidence 45677789999999999999999999999999999975 89999999996 47888 4577 8899999877
Q ss_pred CCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-------------------------
Q 016446 86 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------------------------- 140 (389)
Q Consensus 86 g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~------------------------- 140 (389)
++... ...............++ |+++++++++.|++|++||+.+++++....
T Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 84 GCCTH--VFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TEEEE--EECCCSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccc--ccccccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 65411 01101111112236676 899999999999999999998776543221
Q ss_pred CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 016446 141 DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 219 (389)
Q Consensus 141 ~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~ 219 (389)
...|. .+. ++.+++++. .|+.|++||+.+++.+.++.++......+.|+ +.+..+++++.|++|++||+++++
T Consensus 161 ~~~v~--~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~ 234 (355)
T d1nexb2 161 MASVR--TVSGHGNIVVSGS---YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGE 234 (355)
T ss_dssp SSCEE--EEEEETTEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTCC
T ss_pred ccccc--ccccccceeeeec---ccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeeeccccc
Confidence 01122 233 467777664 45799999999999999999888889999998 678899999999999999999999
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 016446 220 LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 297 (389)
Q Consensus 220 ~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~ 297 (389)
++..+.+|...|.+++|+| ++|++++ |++|++||++ +++. +..|...+ +...+|+|++++|++|+
T Consensus 235 ~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~g~----- 301 (355)
T d1nexb2 235 LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNL----SAITTFYVSDNILVSGS----- 301 (355)
T ss_dssp EEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTC----CCCCEEEECSSEEEEEE-----
T ss_pred ccccccccccccccccccc--ceeeeeeccccccccccccccee--cccccCCc----eEEEEEcCCCCEEEEEe-----
Confidence 9999999999999999875 6899998 9999999997 6543 45566542 23457899999999875
Q ss_pred ccccCCCCCeEEEEeCCCCeEEE-EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE
Q 016446 298 DQWMEGSAGSINVSSILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 376 (389)
Q Consensus 298 ~~~~~s~D~tIklWd~~tg~~l~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La 376 (389)
|++|||||+++|+++. .+.+|. ..|++|+|+|+ ..|+
T Consensus 302 -------d~~i~vwd~~tg~~~~~~~~~~~----------------------------------~~V~~v~~~~~-~~~~ 339 (355)
T d1nexb2 302 -------ENQFNIYNLRSGKLVHANILKDA----------------------------------DQIWSVNFKGK-TLVA 339 (355)
T ss_dssp -------TTEEEEEETTTCCBCCSCTTTTC----------------------------------SEEEEEEEETT-EEEE
T ss_pred -------CCEEEEEECCCCCEEEEEecCCC----------------------------------CCEEEEEEcCC-eEEE
Confidence 4899999999999985 577887 58999999998 5789
Q ss_pred EecCCCcEEEc
Q 016446 377 TGNRHGLVHVW 387 (389)
Q Consensus 377 Sgs~D~tIrlW 387 (389)
+++.||+++||
T Consensus 340 ~~s~dg~~~l~ 350 (355)
T d1nexb2 340 AVEKDGQSFLE 350 (355)
T ss_dssp EEESSSCEEEE
T ss_pred EEECCCcEEEE
Confidence 99999997776
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-44 Score=325.98 Aligned_cols=275 Identities=10% Similarity=0.161 Sum_probs=237.7
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
+..|.+|.|+ +++||+++.||+|||||.++|++++++.+|. +.|++++|+|++..++++ ..+ ..+.+
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~----~~~------~~~~~ 85 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASC----SAD------MTIKL 85 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEE----ETT------SCCCE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC-CcEEEEeeeccccccccc----ccc------ccccc
Confidence 3579999998 8999999999999999999999999999875 899999999999999884 355 45556
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEE
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLI 157 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~ 157 (389)
|+....+.. ..+ ..+...+..+.|+ |+++.|++++.|+++++||+.+++++.++. ...+.+++|+ ++.+||+
T Consensus 86 ~~~~~~~~~--~~~--~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 86 WDFQGFECI--RTM--HGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp EETTSSCEE--ECC--CCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccc--ccc--ccccccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence 665554431 111 1234445678997 899999999999999999999999888875 4689999999 5888887
Q ss_pred EecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEec-------------------CCCeEEEEeCCCcEEEEECCCC
Q 016446 158 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-------------------FNEKLLVKQENENLQILDVRNA 218 (389)
Q Consensus 158 ~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~-------------------~~~~l~~~s~D~tIklWd~~tg 218 (389)
++ .|++|++|++.+++++..+..|...+..++|.+. .+..+++++.|++|++||++++
T Consensus 161 ~~---~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 237 (317)
T d1vyhc1 161 CS---NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237 (317)
T ss_dssp EE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred Ee---CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence 64 4589999999999999999999999999998632 1235778899999999999999
Q ss_pred eEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 016446 219 ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 296 (389)
Q Consensus 219 ~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~ 296 (389)
+++.++.+|...|.+++|+|+|++|++++ ||+|+|||++ ++++++|.+|... |++++|||||++||||+.|
T Consensus 238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----V~~~~~s~~~~~l~s~s~D-- 310 (317)
T d1vyhc1 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSVD-- 310 (317)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEETT--
T ss_pred cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeCC--
Confidence 99999999999999999999999999998 9999999996 9999999999887 8999999999999999875
Q ss_pred cccccCCCCCeEEEEe
Q 016446 297 EDQWMEGSAGSINVSS 312 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd 312 (389)
|+|||||
T Consensus 311 ---------g~i~iWd 317 (317)
T d1vyhc1 311 ---------QTVKVWE 317 (317)
T ss_dssp ---------SEEEEEC
T ss_pred ---------CeEEEeC
Confidence 9999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-42 Score=318.39 Aligned_cols=312 Identities=12% Similarity=0.150 Sum_probs=242.5
Q ss_pred cEE-EEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 5 KVI-EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 5 ~v~-~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
.|. .+-|.|++||+++.||+|||||+++|++++++.+|. ..|.+++|+| +.|+++ +.| ..+++|++
T Consensus 18 ~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-~~V~~v~~~~--~~l~s~----s~D------~~~~~~~~ 84 (342)
T d2ovrb2 18 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-GGVWSSQMRD--NIIISG----STD------RTLKVWNA 84 (342)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS-SCEEEEEEET--TEEEEE----ETT------SCEEEEET
T ss_pred ceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC-CCEEEEEeCC--Cccccc----eec------cccccccc
Confidence 453 455669999999999999999999999999999875 8999999998 488884 577 78888887
Q ss_pred ccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCC-cEEEEEEcCCceEEEEecC
Q 016446 84 RRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIKISPGIMLLIFNRS 161 (389)
Q Consensus 84 ~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~-~V~~vafS~g~~la~~~~~ 161 (389)
..... ... ......+.... ...+.++.+..|+++.+|+..+++....+... ............+++++
T Consensus 85 ~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (342)
T d2ovrb2 85 ETGEC-----IHTLYGHTSTVRCMH---LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA-- 154 (342)
T ss_dssp TTTEE-----EEEECCCSSCEEEEE---EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE--
T ss_pred ccccc-----eecccccceeEeeee---cccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec--
Confidence 65543 111 11111112233 34567888899999999999999988777633 33333333556666653
Q ss_pred CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCc
Q 016446 162 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 241 (389)
Q Consensus 162 s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~ 241 (389)
.|++|++||+..++++.++.+|...+..+. +++..+++++.|++|++||++++++++.+.+|...+.+++++| +
T Consensus 155 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~ 228 (342)
T d2ovrb2 155 -YDFMVKVWDPETETCLHTLQGHTNRVYSLQ---FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N 228 (342)
T ss_dssp -TTSCEEEEEGGGTEEEEEECCCSSCEEEEE---ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--T
T ss_pred -CCCeEEEeecccceeeEEEcCccccccccc---CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--C
Confidence 458999999999999999997766555444 4578999999999999999999999999999999998887765 6
Q ss_pred EEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 242 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 242 ~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+|++++ |++|++||+. ++....+.+|.... ..+..+ +++++++++|+.| |+|||||+++|+++
T Consensus 229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~s~s~D-----------g~i~iwd~~tg~~i 293 (342)
T d2ovrb2 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--SAVTCL--QFNKNFVITSSDD-----------GTVKLWDLKTGEFI 293 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCS--SCEEEE--EECSSEEEEEETT-----------SEEEEEETTTCCEE
T ss_pred EEEEEcCCCEEEEEecccccccccccccceee--eceeec--ccCCCeeEEEcCC-----------CEEEEEECCCCCEE
Confidence 899998 9999999997 88888888765432 114444 4567899999865 99999999999999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCc----EEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~t----IrlW~~ 389 (389)
+++..+.. +++...|++|+|||||..||+|+.||+ |++||.
T Consensus 294 ~~~~~~~~-----------------------------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 294 RNLVTLES-----------------------------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEEEECTT-----------------------------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred EEEecccC-----------------------------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 99864320 111258999999999999999999997 999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-41 Score=324.07 Aligned_cols=274 Identities=16% Similarity=0.162 Sum_probs=228.0
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceee---eee-ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFL-NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l---~tl-~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
++.|..|.|+ +++||+++ ||+|++||+++++.. ..+ ...|.+.|++|+|+|||+.|+++ +.| .
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~----~~d------g 119 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEA------S 119 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESS------S
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe----ecc------c
Confidence 4678999999 89999998 899999998765432 222 22345899999999999999994 567 7
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCc
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGI 153 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~ 153 (389)
.+++|++..........+ ..+...+..++|+ |++.+|++++.|++|++|++.++++..... ...|.+++|+ ++.
T Consensus 120 ~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAEL--TSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEEEECCCC--EEEEEE--ECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccc--ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999865443101111 2344445678998 899999999999999999999999887765 5689999999 688
Q ss_pred eEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEE
Q 016446 154 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 233 (389)
Q Consensus 154 ~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~s 233 (389)
.+++++ .|++|++||+++|++++++. |...+.+++|+ |++..+++++.|+.|++||+.++++.+ ...|...|.+
T Consensus 197 ~~~~~~---~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~ 270 (337)
T d1gxra_ 197 KLWTGG---LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLS 270 (337)
T ss_dssp EEEEEE---TTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEE
T ss_pred cccccc---ccccccccccccceeecccc-cccceEEEEEc-ccccccceecccccccccccccccccc-ccccccccce
Confidence 888764 45899999999999999886 67889999997 778899999999999999999998865 4789999999
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 234 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 234 v~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
++|+|+|++|++++ |++|++||+. |+++.++. |... |.+++|||||++||+||.| |+||||
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~-----v~~~~~s~d~~~l~t~s~D-----------~~I~vW 333 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS-----VLSCDISVDDKYIVTGSGD-----------KKATVY 333 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-----EEEEEECTTSCEEEEEETT-----------SCEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCC-----EEEEEEeCCCCEEEEEeCC-----------CeEEEE
Confidence 99999999999998 9999999996 99998876 5554 8999999999999999865 999999
Q ss_pred eC
Q 016446 312 SI 313 (389)
Q Consensus 312 d~ 313 (389)
|+
T Consensus 334 dl 335 (337)
T d1gxra_ 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-41 Score=314.97 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=222.3
Q ss_pred ceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCC
Q 016446 33 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 112 (389)
Q Consensus 33 g~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pd 112 (389)
|+..++++||. +.|.+|+|+|||++||+ ++.| ..+++||+.+|++. ..+...+...+.+++|+ |+
T Consensus 2 g~~~~~~~GH~-~~V~~l~~s~dg~~l~s----~s~D------g~v~vWd~~~~~~~---~~~~~~h~~~v~~v~~~-~~ 66 (299)
T d1nr0a2 2 GSIDQVRYGHN-KAITALSSSADGKTLFS----ADAE------GHINSWDISTGISN---RVFPDVHATMITGIKTT-SK 66 (299)
T ss_dssp TEEEEEECCCS-SCEEEEEECTTSSEEEE----EETT------SCEEEEETTTCCEE---ECSSCSCSSCEEEEEEC-TT
T ss_pred CccceEcCCCC-CCcEEEEECCCCCEEEE----EcCC------CeEEEEECCCCcEE---EEEcCCCCCcEEEEEee-cc
Confidence 78889999975 89999999999999999 4577 88999999998862 12222355567889998 89
Q ss_pred CeEEEEecCCCeEEEEeCCCCe-----EEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC
Q 016446 113 GKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 186 (389)
Q Consensus 113 G~~Las~s~D~tiklWdl~~g~-----~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~ 186 (389)
|++++ ++.|+++++|++.... .....+...+.+++|+ +|..++++. ++.+++|+. ++...... .+
T Consensus 67 g~~~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~----~~~i~~~~~--~~~~~~~~--~~ 137 (299)
T d1nr0a2 67 GDLFT-VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----YKHIAIYSH--GKLTEVPI--SY 137 (299)
T ss_dssp SCEEE-EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----SSEEEEEET--TEEEEEEC--SS
T ss_pred ceeec-ccceeeEEEeccCCccccccccccccccccccccccccccccccccc----ccccccccc--cccccccc--cc
Confidence 98665 5679999999975432 1223335689999999 566665543 358999994 45555443 35
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEE--
Q 016446 187 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV-- 261 (389)
Q Consensus 187 ~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l-- 261 (389)
....++|+ |++..+++++.|+.|++||++++++.+ ....|...|.+++|+|++++|++++ |++|++||+. +..+
T Consensus 138 ~~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 138 NSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp CEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67888997 778889999999999999999988765 3567999999999999999999998 9999999996 6544
Q ss_pred -EEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe--cCCCCCCCcccccCCC
Q 016446 262 -TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI--NATNCSPKVDDELGSS 338 (389)
Q Consensus 262 -~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl--~gH~~~~~~~~~~~~~ 338 (389)
..+.+|..+ |.+++|+|||++||+|+.| ++|+|||+.+++....+ .+|..
T Consensus 217 ~~~~~~h~~~-----v~~l~~s~~~~~l~sgs~d-----------g~i~iwd~~~~~~~~~~~~~~~~~----------- 269 (299)
T d1nr0a2 217 TNSWTFHTAK-----VACVSWSPDNVRLATGSLD-----------NSVIVWNMNKPSDHPIIIKGAHAM----------- 269 (299)
T ss_dssp CCCCCCCSSC-----EEEEEECTTSSEEEEEETT-----------SCEEEEETTCTTSCCEEETTSSTT-----------
T ss_pred cccccccccc-----cccccccccccceEEEcCC-----------CEEEEEECCCCCcceEEEecCCCC-----------
Confidence 466778776 8999999999999999875 89999999987654333 33331
Q ss_pred CCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 339 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|.++ ++|++++|+||+.|++|||||.
T Consensus 270 ----------------------~~v~~~-~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 270 ----------------------SSVNSV-IWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp ----------------------SCEEEE-EEEETTEEEEEETTSCEEEEEC
T ss_pred ----------------------CcEEEE-EECCCCEEEEEeCCCEEEEEec
Confidence 367666 4567889999999999999984
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-41 Score=320.04 Aligned_cols=274 Identities=12% Similarity=0.124 Sum_probs=229.3
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecC-----------------CcceEEEEEEeeCCCEEEEEEE
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVS-----------------PDEVIRSLFYNKNNDSLITVSV 64 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~-----------------~~~~v~sv~~spdg~~l~s~s~ 64 (389)
+.|.+|.|+ |++||+++ |++|+||++.+|+++.++..+ +...|++|+|+|+|+.|+++
T Consensus 63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~-- 139 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-- 139 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE--
T ss_pred CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec--
Confidence 578899999 89999987 999999999999999887653 33569999999999999994
Q ss_pred eecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CC
Q 016446 65 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 142 (389)
Q Consensus 65 ~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~ 142 (389)
+.| ..+++|+...++. +.. ..+...+..++|+ +++..+++++.|+.|++||+.+..++.... ..
T Consensus 140 --~~d------g~v~i~~~~~~~~-----~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 140 --AED------RLIRIWDIENRKI-----VMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp --ETT------SCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --ccc------ccccccccccccc-----ccccccccccccccccc-cccccccccccceeeeeeecccccccccccccc
Confidence 577 7899999888765 222 2345556789998 899999999999999999999998876665 45
Q ss_pred cEEEEEEc--CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-------ecCCceeEEEEEecCCCeEEEEeCCCcEEEE
Q 016446 143 HVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 213 (389)
Q Consensus 143 ~V~~vafS--~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklW 213 (389)
....++|+ ++.+|++++ .|++|++||+.+++.+.++. +|...+..++|+ |++..+++++.|++|++|
T Consensus 206 ~~~~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 206 GVTTVAVSPGDGKYIAAGS---LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLW 281 (388)
T ss_dssp CEEEEEECSTTCCEEEEEE---TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEE
T ss_pred ccccccccCCCCCeEEEEc---CCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcEEEE
Confidence 66677777 477888764 45899999999999988764 577889999998 788899999999999999
Q ss_pred ECCCCe------------EEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEE
Q 016446 214 DVRNAE------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 279 (389)
Q Consensus 214 d~~tg~------------~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv 279 (389)
|+.+++ +......|...|.+++|+|+|++|++++ ||+|++||++ |+++.+|++|... |.++
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~-----V~~~ 356 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VISV 356 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEE
T ss_pred eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC-----EEEE
Confidence 998654 4556678999999999999999999998 9999999997 9999999999987 6777
Q ss_pred E------ECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 280 Y------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 280 ~------fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
+ |+|||++|||||.| |+|||||++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~D-----------g~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGD-----------CKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETT-----------SEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCC-----------CEEEEEeee
Confidence 6 57899999999865 999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-39 Score=300.63 Aligned_cols=276 Identities=9% Similarity=0.107 Sum_probs=230.2
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|.+|.|+ +++||+++.||+|++||..+|++++++.+|. ..|.+++|+|+|+.|+++ +.| ..+++
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~----~~d------~~i~~ 123 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACG----GLD------NICSI 123 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC-SCEEEEEECTTSSEEEEE----ETT------CCEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccc-ccEEeeEeeccceeeeee----ccc------ceeec
Confidence 3579999998 8999999999999999999999999999875 899999999999999994 567 77888
Q ss_pred eEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEE
Q 016446 81 EYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLL 156 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la 156 (389)
|+.......... ... ..+... ....+. ..+..++....|.+.+.|...+........ ...|....+. .+..++
T Consensus 124 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 124 YNLKTREGNVRV-SRELAGHTGY-LSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EESSSSCSCCCE-EEEECCCSSC-EEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred cccccccccccc-ceeccccccc-cccccc-ccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence 887655442111 111 112222 223333 346678888899999999988777554443 5689999999 577776
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAF 234 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv 234 (389)
++. .|++|++||++++++++++.+|...+.+|+|+ |++..+++++.|++|++||+...+.+..+ ..|...|.++
T Consensus 201 ~~~---~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 201 SGA---CDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEE---TTTEEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred Eee---cCceEEEEECCCCcEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 653 45899999999999999999999999999998 78889999999999999999999987765 5667789999
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 235 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 235 ~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
+|+|+|++|++++ |++|++||+. ++++.+|.+|..+ |++|+|+|||++|||||.| |+|||||
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~-----V~~l~~s~d~~~l~s~s~D-----------g~v~iWd 340 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSWD-----------SFLKIWN 340 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEeCCCCEEEEEccC-----------CEEEEeC
Confidence 9999999999998 9999999996 9999999999987 8999999999999999875 9999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-41 Score=324.74 Aligned_cols=310 Identities=12% Similarity=0.044 Sum_probs=229.3
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
++|.+++|||||+.||+ ++.| +.|+||++..+++.....+ .+|.+.|.+++|+ |||++||+|+.|++
T Consensus 8 ~pIt~~~~s~dg~~la~----~~~~------~~i~iw~~~~~~~~~~~~l--~gH~~~V~~l~fs-p~~~~l~s~s~D~~ 74 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAI----CPNN------HEVHIYEKSGNKWVQVHEL--KEHNGQVTGVDWA-PDSNRIVTCGTDRN 74 (371)
T ss_dssp SCCCEEEECTTSSEEEE----ECSS------SEEEEEEEETTEEEEEEEE--ECCSSCEEEEEEE-TTTTEEEEEETTSC
T ss_pred CCeEEEEECCCCCEEEE----EeCC------CEEEEEECCCCCEEEEEEe--cCCCCCEEEEEEC-CCCCEEEEEECCCe
Confidence 78999999999999998 5677 8899999987764211112 3466678899998 89999999999999
Q ss_pred EEEEeCCCCeEE--EEec--CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE----EEEeecCCceeEEEEEe
Q 016446 125 YKVFDLKNYTML--YSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFIE 195 (389)
Q Consensus 125 iklWdl~~g~~l--~tl~--~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l----~tl~~~~~~~~~v~f~~ 195 (389)
|+|||+.+++.. ..+. ...|.+++|+ ++..|++++ .|++|++|++..+... ..+..|...+.+++|+
T Consensus 75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~- 150 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH- 150 (371)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-
T ss_pred EEEEeecccccccccccccccccccccccccccccceeec---ccCcceeeeeeccccccccccccccccccccccccc-
Confidence 999999887744 4443 4679999999 588888874 4589999998876543 3334677889999998
Q ss_pred cCCCeEEEEeCCCcEEEEECCC------------------CeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 196 QFNEKLLVKQENENLQILDVRN------------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 196 ~~~~~l~~~s~D~tIklWd~~t------------------g~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
|++..|++++.|++|++||+.. ++++....+|...|.+++|+|+|++|++++ |++|++||+
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence 7888999999999999999864 346777889999999999999999999998 999999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccccc
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 335 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~ 335 (389)
+ ++++.++.+|..+ |.+++|+|||++||+|+ |+.+++|+...+.....+.++...+......
T Consensus 231 ~~~~~~~~~~~~~~~-----v~s~~fs~d~~~la~g~------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (371)
T d1k8kc_ 231 DKKMAVATLASETLP-----LLAVTFITESSLVAAGH------------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 293 (371)
T ss_dssp GGTTEEEEEECSSCC-----EEEEEEEETTEEEEEET------------TSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred ecccceeeeeccccc-----ceeeeecCCCCEEEEEc------------CCceEEEEeeCCCceEEEeeeecCccccccc
Confidence 7 9999999999887 89999999999999875 3566666554443333444443221111100
Q ss_pred CCCCC------CCcccccc-ccceecccccccCCEEEEEECCCCC----EEEEecCCCcEEEcc
Q 016446 336 GSSST------GKSKKLNK-SSYIRSTVGEALEDITSLFYDEERN----EIYTGNRHGLVHVWS 388 (389)
Q Consensus 336 ~~~~~------~~~~~~~~-~~~~~~~~~~~~~~V~svafSpdg~----~LaSgs~D~tIrlW~ 388 (389)
..... .......+ ..........|...|.++++.|++. .+||++.||+|||||
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 00000 00000000 0000111122557899999988763 599999999999998
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-40 Score=316.57 Aligned_cols=278 Identities=8% Similarity=0.002 Sum_probs=230.8
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
|.++.-|.++ |+.||.+. ++.+.+|++++++..+.+.+|. +.|.+++|+|||++||+ ++.| +.++|
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~-~~v~~~~~sp~g~~lat----g~~d------g~i~i 84 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS-HQTTVAKTSPSGYYCAS----GDVH------GNVRI 84 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS-SCEEEEEECTTSSEEEE----EETT------SEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCC-CCEEEEEEeCCCCeEec----cccC------ceEee
Confidence 4444445555 88888875 6678999999999999999874 89999999999999999 5577 89999
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC--CCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-Cce-
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIM- 154 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~--D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~- 154 (389)
|++..++......+ ..+...+.+++|+ |||++|++++. |+.++||++++++++.++. .+.|.+|+|+| +..
T Consensus 85 wd~~~~~~~~~~~~--~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~ 161 (311)
T d1nr0a1 85 WDTTQTTHILKTTI--PVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 161 (311)
T ss_dssp EESSSTTCCEEEEE--ECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred eeeecccccccccc--ccccCcccccccc-ccccccccccccccccccccccccccccccccccccccccccccccceee
Confidence 99988775221111 2345567889998 89999999886 5679999999999887775 46899999995 664
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc-------ccC
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTE 227 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l-------~gh 227 (389)
|+++ +.|++|++||+++++++.++..|...+..+.|+ |++..+++++.|++|++||+.+++.+.++ .+|
T Consensus 162 l~sg---s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h 237 (311)
T d1nr0a1 162 IISG---SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237 (311)
T ss_dssp EEEE---ETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred eccc---ccccccccccccccccccccccccccccccccC-ccccccccccccccccccccccccccccccccccccccc
Confidence 5554 456899999999999999999999999999998 78899999999999999999999988776 368
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
...|.+++|+|+|++|++++ |++|||||++ |+++++|..|.... ...+.+.|++++|++++.|
T Consensus 238 ~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~----~~~~~~~~~~~~l~s~s~d----------- 302 (311)
T d1nr0a1 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGIIWTKQALVSISAN----------- 302 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG----GCEEEEEECSSCEEEEETT-----------
T ss_pred cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc----ceEEEEEecCCEEEEEECC-----------
Confidence 99999999999999999999 9999999997 99999999876532 2345566677789998764
Q ss_pred CeEEEEeCC
Q 016446 306 GSINVSSIL 314 (389)
Q Consensus 306 ~tIklWd~~ 314 (389)
|.|++||.+
T Consensus 303 G~i~~wd~d 311 (311)
T d1nr0a1 303 GFINFVNPE 311 (311)
T ss_dssp CCEEEEETT
T ss_pred CEEEEEeCC
Confidence 999999963
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-40 Score=316.32 Aligned_cols=285 Identities=11% Similarity=0.091 Sum_probs=216.7
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEec-CCCeEEEEecCCCe
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSI 124 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~-pdG~~Las~s~D~t 124 (389)
.+.+++|+|+|+.|+.++ ++. ..++.|+....+.. ...-+...+...+.+|+|+| .||++||+|+.||+
T Consensus 19 ~~t~l~~~~~~~~la~~~---~~~------~~i~~~~~~~~~~~-~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPC---GKS------AFVRCLDDGDSKVP-PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEE---TTE------EEEEECCSSCCSSC-SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEe---CCC------EEEEEEeCCCCCcc-ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence 456899999999998853 222 23444543333321 11112211223467899983 27899999999999
Q ss_pred EEEEeCCCCeEEE----------EecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEE
Q 016446 125 YKVFDLKNYTMLY----------SISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 193 (389)
Q Consensus 125 iklWdl~~g~~l~----------tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f 193 (389)
|||||+.++++.. ..+...|.+|+|+ +|.+|++++ .+.++.+++|+..+|+++.++.+|...+.+++|
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG-EGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE-CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee-ccccceEEEEeecccccceeeeecccccccccc
Confidence 9999987654221 1134689999999 678887664 456789999999999999999999999999999
Q ss_pred EecCCC-eEEEEeCCCcEEEEECCCCeEEEE---cccCCCceEEEEEcCC-CcEEEEEc-CCeEEEEeCC-CcEEEEecc
Q 016446 194 IEQFNE-KLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFED 266 (389)
Q Consensus 194 ~~~~~~-~l~~~s~D~tIklWd~~tg~~~~~---l~gh~~~v~sv~fspd-g~~laS~s-D~tIklWd~~-G~~l~tl~g 266 (389)
+ |++. .+++++.|++|++||+.+++.... +.+|...|.+++|+|| +++|++++ |++|++||++ ++++++|++
T Consensus 168 ~-~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 168 K-QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp C-SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred c-ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc
Confidence 8 5554 466788999999999998887555 4567888999999997 68999998 9999999996 999999999
Q ss_pred CcCCcCCCCeeEEEEC---CCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 267 HLLWHPDCNTNNIYIT---SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 267 h~~~~~~~~v~sv~fS---pdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
|..++ .++.|+ |||++||+++.| ++|||||+++|++++++..|.....
T Consensus 247 ~~~~v-----~~~~~s~~~~dg~~l~s~s~D-----------~~i~iwd~~~~~~~~~~~~~~~~~~------------- 297 (325)
T d1pgua1 247 DQEPV-----QGGIFALSWLDSQKFATVGAD-----------ATIRVWDVTTSKCVQKWTLDKQQLG------------- 297 (325)
T ss_dssp TTBCC-----CSCEEEEEESSSSEEEEEETT-----------SEEEEEETTTTEEEEEEECCTTCGG-------------
T ss_pred ccccc-----ccceeeeeccCCCEEEEEeCC-----------CeEEEEECCCCCEEEEEEecCCccc-------------
Confidence 99874 444454 799999999865 9999999999999999988873100
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
....++.+++++ .|+|||.||+|++||.
T Consensus 298 -----------------~~~~~~~~~~~~-~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 -----------------NQQVGVVATGNG-RIISLSLDGTLNFYEL 325 (325)
T ss_dssp -----------------GCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred -----------------CeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence 123334444443 7899999999999984
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-38 Score=294.22 Aligned_cols=276 Identities=11% Similarity=0.080 Sum_probs=218.5
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeE
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 80 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l 80 (389)
...|.+|.|+ +++||+++.||+|++||+++|++++++...|...|.+++|+|+|+.++. + .| ..+++
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~----~-~d------~~v~~ 80 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV----S-WD------DHLKV 80 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE----E-TT------TEEEE
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc----c-ce------eeEEE
Confidence 3579999999 8999999999999999999999999998777799999999999986544 3 45 57788
Q ss_pred eEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEe
Q 016446 81 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFN 159 (389)
Q Consensus 81 ~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~ 159 (389)
|++......... .....+...+..++|+ |||+++++++ ++.+++|+. ++.........+.+++|+ ++++|++++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSK-AVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSH--GKLTEVPISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTS-CCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEET--TEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred eccCCccccccc-cccccccccccccccc-cccccccccc-ccccccccc--cccccccccccccccccccccccccccc
Confidence 887554432222 2223445567789998 8999888665 679999994 455555567789999999 577887764
Q ss_pred cCCCCeeEEEEEcCCCeEEEE-EeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE---EEcccCCCceEEEE
Q 016446 160 RSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---EVSRTEFMTPSAFI 235 (389)
Q Consensus 160 ~~s~d~tiklWd~~tG~~l~t-l~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~---~~l~gh~~~v~sv~ 235 (389)
.|+.|++||++++++... ...|...+..++|+ |++..+++++.|++|++||+.++..+ ..+.+|...|.+++
T Consensus 156 ---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 156 ---QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp ---TTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred ---ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 458999999999887653 34688899999998 67889999999999999999988764 45678999999999
Q ss_pred EcCCCcEEEEEc-CCeEEEEeCC-CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEE
Q 016446 236 FLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 311 (389)
Q Consensus 236 fspdg~~laS~s-D~tIklWd~~-G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklW 311 (389)
|+|+|++|++++ |++|+|||++ ++. +.....|... .|..+ ++|++++|+|||.| ++||||
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~s~s~D-----------~~i~iW 295 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS----SVNSV-IWLNETTIVSAGQD-----------SNIKFW 295 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS----CEEEE-EEEETTEEEEEETT-----------SCEEEE
T ss_pred ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC----cEEEE-EECCCCEEEEEeCC-----------CEEEEE
Confidence 999999999999 9999999996 543 3333344332 25555 55778999998764 999999
Q ss_pred eCC
Q 016446 312 SIL 314 (389)
Q Consensus 312 d~~ 314 (389)
|+.
T Consensus 296 dl~ 298 (299)
T d1nr0a2 296 NVP 298 (299)
T ss_dssp ECC
T ss_pred ecc
Confidence 973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-39 Score=312.69 Aligned_cols=279 Identities=10% Similarity=0.073 Sum_probs=225.8
Q ss_pred ccccEEEEEee--ccEEEEEecCceEEEEecccce--eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 2 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 2 ~~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~--~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+..|.++.|+ ++.||+++.||+|+||+.++++ ++.+|.+|. ..|++|+|+|+|++||++ +.| +.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~-~~V~~l~fsp~~~~l~s~----s~D------~~ 74 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTC----GTD------RN 74 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEE----ETT------SC
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCC-CCEEEEEECCCCCEEEEE----ECC------Ce
Confidence 35779999999 8899999999999999998775 677888874 899999999999999994 467 78
Q ss_pred eeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEE----Eec--CCcEEEEEEc
Q 016446 78 TKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY----SIS--DKHVQEIKIS 150 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~----tl~--~~~V~~vafS 150 (389)
++||++..++.. ..+. ..+...+.+++|+ |||+.|++++.|++|++|++....... ... ...|.+++|+
T Consensus 75 i~vWd~~~~~~~---~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 75 AYVWTLKGRTWK---PTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp EEEEEEETTEEE---EEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred EEEEeecccccc---cccccccccccccccccc-cccccceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence 999999877541 1222 2344456789998 899999999999999999987655332 222 4689999999
Q ss_pred -CCceEEEEecCCCCeeEEEEEcCC------------------CeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEE
Q 016446 151 -PGIMLLIFNRSSSHVPLKILSIED------------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 211 (389)
Q Consensus 151 -~g~~la~~~~~s~d~tiklWd~~t------------------G~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIk 211 (389)
+|.+||+++ .|++|++||+.. ++++.++..|...+..++|+ |++.++++++.|++|+
T Consensus 151 p~~~~l~s~s---~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~ 226 (371)
T d1k8kc_ 151 PNSVLLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVC 226 (371)
T ss_dssp TTSSEEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEE
T ss_pred ccccceeccc---cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcce
Confidence 488888764 458999999764 56788888899999999998 7889999999999999
Q ss_pred EEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEec-------------------------
Q 016446 212 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE------------------------- 265 (389)
Q Consensus 212 lWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~------------------------- 265 (389)
+||+++++++..+.+|..+|.+++|+|||++||+|+|+.+++|..+ ......+.
T Consensus 227 iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (371)
T d1k8kc_ 227 LADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306 (371)
T ss_dssp EEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred EEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccc
Confidence 9999999999999999999999999999999999888888887642 11111111
Q ss_pred ----------------cCcCCcCCCCeeEEEECCCC----CEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 266 ----------------DHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 266 ----------------gh~~~~~~~~v~sv~fSpdG----~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
.|.+. |.+|+|.|++ ..+||++.| |+|||||+++
T Consensus 307 ~~~~~~~~~~~~~~~~~H~~~-----I~~i~~~~~~~~~~~~~~T~g~D-----------g~v~iW~~~~ 360 (371)
T d1k8kc_ 307 KASSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGMD-----------GGMSIWDVRS 360 (371)
T ss_dssp CC---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEETT-----------SEEEEEEHHH
T ss_pred eeEEeccccccceecccccCC-----EEEEEEeCCCCcceEEEEEEcCC-----------CeEEEEeCCc
Confidence 14443 7899998865 358898765 9999999864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-38 Score=308.05 Aligned_cols=297 Identities=9% Similarity=0.033 Sum_probs=213.7
Q ss_pred CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc-eeEe-eeccc---Cce---eEEEecCCC
Q 016446 42 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF-ALFE-SESLK---WPG---FVEFDDVNG 113 (389)
Q Consensus 42 ~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~-~l~~-~~~~~---~~~---~v~Fs~pdG 113 (389)
.|...|++|++++ +.|+|+| .| .+++||+..+++..... .... ..+.. ++. .+.++..++
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S----~D------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCS----GD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEE----TT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred cccCccEEEEEeC--CEEEEEE----CC------CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence 3468999999876 7899954 67 78999998766542111 1111 01111 111 233333346
Q ss_pred eEEEEecCCCeEEEEeCCCCeE---E--EEe-------cCCcEEEEEEcC------CceEEEEecCCCCeeEEEEEcCCC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTM---L--YSI-------SDKHVQEIKISP------GIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~---l--~tl-------~~~~V~~vafS~------g~~la~~~~~s~d~tiklWd~~tG 175 (389)
.++++++.|++|++|++..... + ..+ +...++++++++ +.++++++ .|++|++|++...
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---VKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---TTSCEEEEEEESS
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc---CCCcEEEEEeecC
Confidence 7899999999999999754331 1 111 124688888873 45676663 4589999997421
Q ss_pred e---------------EEEEE---eecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE------cccCCCce
Q 016446 176 T---------------VLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV------SRTEFMTP 231 (389)
Q Consensus 176 ~---------------~l~tl---~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~------l~gh~~~v 231 (389)
. ..... ..+...+.+|+|+ | ++.+++++.|++|||||+++++++.. +.+|..+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~-dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V 234 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-E-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234 (393)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-T-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred CcccceeeeeeccceecccceecccCCCCcEEEEEEC-C-CCEEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence 1 11111 2233456889997 4 45888899999999999999988654 46799999
Q ss_pred EEEEEcCCCcEEEEEc-CCe---EEEEeCC-CcEEEEec-------------cCcCCcCCCCeeEEEECCCCCEEEEEec
Q 016446 232 SAFIFLYENQLFLTFR-NRT---VAVWNFR-GELVTSFE-------------DHLLWHPDCNTNNIYITSDQDLIISYCK 293 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~t---IklWd~~-G~~l~tl~-------------gh~~~~~~~~v~sv~fSpdG~~laS~s~ 293 (389)
++|+|+|||++|++++ |++ |+|||++ |+++.+|+ ||..+ |++|+|||||++|||||.
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-----V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEEET
T ss_pred EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-----eeeeccCCCCCeeEEECC
Confidence 9999999999999998 875 9999997 99999885 78887 899999999999999987
Q ss_pred CCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCc----ccccCCCCCCCccccccccceecccccccCCEEEEEEC
Q 016446 294 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV----DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 369 (389)
Q Consensus 294 D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS 369 (389)
| ++|||||+++|+|+++|+||++.+.. ..+.+.+...+ ...++++.|.
T Consensus 310 D-----------~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 361 (393)
T d1sq9a_ 310 D-----------GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-----------------EPGVFDVKFL 361 (393)
T ss_dssp T-----------SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS-----------------SCCEEEEEEE
T ss_pred C-----------CEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE-----------------EcccceEEEC
Confidence 5 99999999999999999999854332 12222222211 1368888888
Q ss_pred CCC----------CEEEEecCCCcEEEcc
Q 016446 370 EER----------NEIYTGNRHGLVHVWS 388 (389)
Q Consensus 370 pdg----------~~LaSgs~D~tIrlW~ 388 (389)
|++ +.|++++.|+.||+|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 362 KKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 765 4599999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-38 Score=290.48 Aligned_cols=268 Identities=13% Similarity=0.100 Sum_probs=214.1
Q ss_pred cceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC
Q 016446 32 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 32 tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
+++++++|.||. ..|.+|+|+| |+| ++.| ..+++|++.+++. .|...+..++|+ +
T Consensus 2 ~~~~i~~l~gH~-~~I~~l~~s~----l~s----gs~D------g~v~~Wd~~~~~~---------~h~~~V~~~~~~-~ 56 (287)
T d1pgua2 2 HDEVLKTISGHN-KGITALTVNP----LIS----GSYD------GRIMEWSSSSMHQ---------DHSNLIVSLDNS-K 56 (287)
T ss_dssp EEEEEEEECCCS-SCEEEEETTT----TEE----EETT------SCEEETTTTEEEC---------CCCSCEEEEECC-S
T ss_pred CcceeEEECCCC-CceEEEEECc----EEE----EeCC------CeEEEEECCCCCC---------CCCCCEEEEEec-C
Confidence 478999999975 9999999998 888 5578 8899999766542 234456778997 5
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeE
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 190 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~ 190 (389)
+ +.+++++.|++||+|++.+.+ ....+..+++++ +..++++ . +..+.+|+..++++++++..+ ...
T Consensus 57 ~-~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~---~~~ 123 (287)
T d1pgua2 57 A-QEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAVLT-N---DDDLLILQSFTGDIIKSVRLN---SPG 123 (287)
T ss_dssp T-TCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEEEE-T---TSEEEEEETTTCCEEEEEECS---SCE
T ss_pred C-CeEEEEeeccccccccccccc-----cccceeeeeeccCCceEEEe-e---cccceeeeccceeeeeecccc---cee
Confidence 5 568899999999999974322 145678889995 5555443 2 357899999999999999843 233
Q ss_pred EEEEecCCCeEEEEeCC-CcEEEEECCCCeEEEEc-ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEE-Eec
Q 016446 191 VDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFE 265 (389)
Q Consensus 191 v~f~~~~~~~l~~~s~D-~tIklWd~~tg~~~~~l-~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~-tl~ 265 (389)
.++. ++++.+++++.| ++|++|++...+....+ ..|...+.+++|+|+|++|++++ |+.|++||+. ++.+. .+.
T Consensus 124 ~~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 202 (287)
T d1pgua2 124 SAVS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 202 (287)
T ss_dssp EEEE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred eeee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence 4555 567888888755 68999999887765554 45888999999999999999998 9999999997 76654 477
Q ss_pred cCcCCcCCCCeeEEEECCCC----------CEEEEEecCCCcccccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccc
Q 016446 266 DHLLWHPDCNTNNIYITSDQ----------DLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDE 334 (389)
Q Consensus 266 gh~~~~~~~~v~sv~fSpdG----------~~laS~s~D~~~~~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~ 334 (389)
+|..+ |.+++|+|++ ++|||||. |++|+|||+++ ++++..+.+|.
T Consensus 203 ~h~~~-----v~~~~~~p~~~~~~~~~~~~~~l~sgs~-----------D~~i~iw~~~~~~~~~~~~~~h~-------- 258 (287)
T d1pgua2 203 FRTSK-----INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHK-------- 258 (287)
T ss_dssp CCSSC-----EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSST--------
T ss_pred ccccc-----cceeeecccccccccccCCCCeeEeecC-----------CCeEEEEECCCCCeEEEEeCCCC--------
Confidence 88876 8999999854 67888876 49999999977 67889999998
Q ss_pred cCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 335 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..|++|+|+||+ .|+|++.|++||+|+.
T Consensus 259 --------------------------~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 259 --------------------------DGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp --------------------------TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred --------------------------CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 589999999997 5899999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-36 Score=279.09 Aligned_cols=278 Identities=13% Similarity=0.137 Sum_probs=212.5
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCCe
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGK 114 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG~ 114 (389)
..+|.||....+.++ +++|++||+ |+.| ..|+|||+.+|++ +.+ ..|...|.+++|+ |++
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~t----gs~D------g~i~vWd~~~~~~-----~~~l~~H~~~V~~l~~s-~~~- 65 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVIT----GADD------KMIRVYDSINKKF-----LLQLSGHDGGVWALKYA-HGG- 65 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEE----EETT------TEEEEEETTTTEE-----EEEEECCSSCEEEEEEE-TTT-
T ss_pred cEEECCcCCCcEEEE--EECCCEEEE----EeCC------CeEEEEECCCCcE-----EEEEECCCCCEEEEEEc-CCC-
Confidence 347899874455555 557899999 5578 8999999998876 222 2466678899998 654
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEecC----CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC----
Q 016446 115 VLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL---- 185 (389)
Q Consensus 115 ~Las~s~D~tiklWdl~~g~~l~tl~~----~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~---- 185 (389)
+|++|+.|++|++|++...++...... ..+..+.++ ++..+++++ .|++|++||+.+++++.......
T Consensus 66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~ 142 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLHVWKLPKESSVPDHGEEHDYPL 142 (355)
T ss_dssp EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE---TTSEEEEEECCC-----------CCCE
T ss_pred EEEEEecccccccccccccccccccccccccccccccccccccceeeeec---CCCcEEEEEccCCceeccccccceecc
Confidence 799999999999999999998766652 235556677 566777664 45899999999887665432110
Q ss_pred ----------------CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C
Q 016446 186 ----------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 248 (389)
Q Consensus 186 ----------------~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D 248 (389)
.+...+....+++..++.+..|+.|++||+.+++.+..+.++...+.++.|+|+++++++++ |
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 222 (355)
T d1nexb2 143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222 (355)
T ss_dssp EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc
Confidence 11223334445678888899999999999999999999999999999999999999999998 9
Q ss_pred CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 249 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 249 ~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
++|++||++ ++++..+++|... |.+++|+ +++|++|+. ||+|++||+.+++. .+.+|..
T Consensus 223 ~~i~i~d~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~~~~~-----------dg~i~iwd~~~~~~--~~~~~~~ 282 (355)
T d1nexb2 223 TTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSR--KFSYHHT 282 (355)
T ss_dssp SCEEEEETTTCCEEEEECCCSSC-----CCEEEEC--SSEEEEECT-----------TSEEEEEETTTCCE--EEEEECT
T ss_pred ceEEeeecccccccccccccccc-----ccccccc--cceeeeeec-----------ccccccccccccce--ecccccC
Confidence 999999997 9999999999987 7889886 579999876 49999999988765 4555652
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+..++|+|++++|++|+ |++|||||.
T Consensus 283 ---------------------------------~~~~~~~~~~~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 283 ---------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp ---------------------------------TCCCCCEEEECSSEEEEEE-TTEEEEEET
T ss_pred ---------------------------------CceEEEEEcCCCCEEEEEe-CCEEEEEEC
Confidence 1222356889999888876 899999983
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-36 Score=273.36 Aligned_cols=271 Identities=13% Similarity=0.245 Sum_probs=209.6
Q ss_pred eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeE
Q 016446 36 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 115 (389)
Q Consensus 36 l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~ 115 (389)
+.....+ ...|+++ +|||+.||| |+.| ..|+|||+.++++. . .+ ..|...+.+|+| |+++
T Consensus 8 i~~~~~~-~~~V~c~--~~d~~~l~s----gs~D------g~i~vWd~~~~~~~--~-~l-~~H~~~V~~v~~---~~~~ 67 (293)
T d1p22a2 8 IHCRSET-SKGVYCL--QYDDQKIVS----GLRD------NTIKIWDKNTLECK--R-IL-TGHTGSVLCLQY---DERV 67 (293)
T ss_dssp EECCCSS-CCCEEEE--ECCSSEEEE----EESS------SCEEEEESSSCCEE--E-EE-CCCSSCEEEEEC---CSSE
T ss_pred EeccCCC-CCCEEEE--EEcCCEEEE----EeCC------CeEEEEECCCCcEE--E-EE-ecCCCCEeeeec---ccce
Confidence 3334444 4678886 568999999 5577 89999999998862 1 12 234445555655 6789
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEE---EEEeecCCceeEE
Q 016446 116 LTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYHLLHRNKKV 191 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l---~tl~~~~~~~~~v 191 (389)
|++|+.|++|++|++.++...............+. +...++++. .++++++|+..+.+.. ..+..|...+..+
T Consensus 68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 144 (293)
T d1p22a2 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144 (293)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred eecccccccccccccccccccccccccccccccccccccceeecc---cccceeEeeccccccccccccccccccccccc
Confidence 99999999999999999998777764332223333 555665654 3479999999876643 4445555555555
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcC
Q 016446 192 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 269 (389)
Q Consensus 192 ~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~ 269 (389)
.+ .+..+++++.|++|++||+++++++..+.+|...+..+.++ +..|++++ |++|++||++ ++++..+.+|..
T Consensus 145 ~~---~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 219 (293)
T d1p22a2 145 DF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219 (293)
T ss_dssp EE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred ee---cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce
Confidence 54 36788889999999999999999999999999999888775 56788887 9999999997 899999998876
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC---------CeEEEEecCCCCCCCcccccCCCCC
Q 016446 270 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---------GKCLAKINATNCSPKVDDELGSSST 340 (389)
Q Consensus 270 ~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t---------g~~l~tl~gH~~~~~~~~~~~~~~~ 340 (389)
. |. .+++++++||+|+.| |+|+|||+.+ .++++++.+|+
T Consensus 220 ~-----v~--~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~-------------- 267 (293)
T d1p22a2 220 L-----VR--CIRFDNKRIVSGAYD-----------GKIKVWDLVAALDPRAPAGTLCLRTLVEHS-------------- 267 (293)
T ss_dssp C-----EE--EEECCSSEEEEEETT-----------SCEEEEEHHHHTSTTSCTTTTEEEEECCCS--------------
T ss_pred e-----ee--eccccceEEEEEcCC-----------CEEEEEECCCCccccccCCceeeEEecCCC--------------
Confidence 5 33 578899999999875 9999999754 45788999998
Q ss_pred CCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 341 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|++|+| |++.|||||.||+|||||
T Consensus 268 --------------------~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 268 --------------------GRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --------------------SCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred --------------------CCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 58999999 467899999999999998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-36 Score=274.28 Aligned_cols=283 Identities=14% Similarity=0.219 Sum_probs=224.4
Q ss_pred EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEE
Q 016446 28 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 107 (389)
Q Consensus 28 W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~ 107 (389)
|+..+-++.++|+||. +.|.+ +++|+|++||| ++.| ..|+|||+.+|++. ..+ ..+...+.+++
T Consensus 1 W~~~~~~~~~~l~GH~-~~V~s-~~~~~g~~l~s----gs~D------g~i~vWd~~~~~~~--~~~--~~h~~~V~~v~ 64 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHD-DHVIT-CLQFCGNRIVS----GSDD------NTLKVWSAVTGKCL--RTL--VGHTGGVWSSQ 64 (342)
T ss_dssp HHHSCCCCCEEEECST-TSCEE-EEEEETTEEEE----EETT------SCEEEEETTTCCEE--EEC--CCCSSCEEEEE
T ss_pred CCCCCCCcCEEECCcC-CceEE-EEEECCCEEEE----EeCC------CeEEEEECCCCCEE--EEE--eCCCCCEEEEE
Confidence 6666778899999975 77766 57889999999 4577 89999999999862 112 23556678899
Q ss_pred EecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecC
Q 016446 108 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 185 (389)
Q Consensus 108 Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~ 185 (389)
|+ |+ +|++|+.|+++++|+........... ...+....+.+.... .+ ..|.++.+|+..+++....+..+.
T Consensus 65 ~~-~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~d~~i~~~~~~~~~~~~~~~~~~ 137 (342)
T d2ovrb2 65 MR-DN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV-SG---SRDATLRVWDIETGQCLHVLMGHV 137 (342)
T ss_dssp EE-TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE-EE---ETTSEEEEEESSSCCEEEEEECCS
T ss_pred eC-CC--ccccceecccccccccccccceecccccceeEeeeeccccccc-cc---ccceeEEEeecccccceeeeeccc
Confidence 98 64 99999999999999998888766555 345666555554444 44 345899999999999999887433
Q ss_pred CceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEE
Q 016446 186 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 263 (389)
Q Consensus 186 ~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~t 263 (389)
... ..+. +....++.++.|++|++||...++++..+.+|...+.. +++++++|++++ |++|++||++ ++++++
T Consensus 138 ~~~--~~~~-~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~ 212 (342)
T d2ovrb2 138 AAV--RCVQ-YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212 (342)
T ss_dssp SCE--EEEE-ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccc--eeec-cccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeE
Confidence 322 2222 45778888999999999999999999999999876655 456789999998 9999999997 999999
Q ss_pred eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCc
Q 016446 264 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 343 (389)
Q Consensus 264 l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~ 343 (389)
+.+|... |.++++ ++++||+|+.| ++|+|||+.+++....+.+|..+
T Consensus 213 ~~~~~~~-----v~~~~~--~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~~~~~--------------- 259 (342)
T d2ovrb2 213 LTGHQSL-----TSGMEL--KDNILVSGNAD-----------STVKIWDIKTGQCLQTLQGPNKH--------------- 259 (342)
T ss_dssp ECCCCSC-----EEEEEE--ETTEEEEEETT-----------SCEEEEETTTCCEEEEECSTTSC---------------
T ss_pred ecccccc-----eeEEec--CCCEEEEEcCC-----------CEEEEEeccccccccccccccee---------------
Confidence 9999875 666665 56799999875 99999999999999999887631
Q ss_pred cccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 344 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.+++|+| +.|++|+.||+||+||.
T Consensus 260 ----------------~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 260 ----------------QSAVTCLQFNK--NFVITSSDDGTVKLWDL 287 (342)
T ss_dssp ----------------SSCEEEEEECS--SEEEEEETTSEEEEEET
T ss_pred ----------------eeceeecccCC--CeeEEEcCCCEEEEEEC
Confidence 14677777764 69999999999999983
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=287.47 Aligned_cols=283 Identities=11% Similarity=0.101 Sum_probs=221.9
Q ss_pred cccEEEEEee--ccEEEEEecCc-eEEEEeccc--ceeeeeeecCCcceEEEEEEee--CCCEEEEEEEeecCCCcceee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSG-VCAAFSRET--NRRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKC 75 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~g-tiklW~~~t--g~~l~tl~~~~~~~v~sv~~sp--dg~~l~s~s~~~~~d~~~l~~ 75 (389)
|..+..+.|. ++.||.++.+. .++.|+... ...+.++.+|+...|.+|+|+| +|+.|++ ++.|
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las----gs~D------ 86 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDES------ 86 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETT------
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE----EeCC------
Confidence 4556667777 88898876554 477887543 4567788998878999999998 5778888 5577
Q ss_pred eeeeEeEeccCCCCCcceeEe----eecccCceeEEEecCCCeEEEEec--CCCeEEEEeCCCCeEEEEec--CCcEEEE
Q 016446 76 RSTKIEYIRRGKPDSGFALFE----SESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS--DKHVQEI 147 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~----~~~~~~~~~v~Fs~pdG~~Las~s--~D~tiklWdl~~g~~l~tl~--~~~V~~v 147 (389)
.+++||++..++......... ..+.+.+..++|+ |||++|++++ .|+.+++|+..+++++.++. ...|.++
T Consensus 87 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 165 (325)
T d1pgua1 87 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165 (325)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEE
T ss_pred CCEEEeeecCCcceeeeecccccccccccCcEEEEEEC-CCCCccceeeccccceEEEEeecccccceeeeecccccccc
Confidence 889999997776532211111 1244557789998 8999988775 47889999999999999886 4689999
Q ss_pred EEcC-Cce-EEEEecCCCCeeEEEEEcCCCeEEEEEe---ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 016446 148 KISP-GIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 222 (389)
Q Consensus 148 afS~-g~~-la~~~~~s~d~tiklWd~~tG~~l~tl~---~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~ 222 (389)
+|+| +.. ++++ +.|++|++||+.+++...++. .|...+..++|+|..+..+++++.|++|+|||++++++++
T Consensus 166 ~~~~~~~~~~~~~---~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 166 HLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred cccccccceEEEe---ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 9994 555 4444 446899999999999888775 3455689999984335677788999999999999999999
Q ss_pred EcccCCCceEEEEEc---CCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC-CEEEEEecCCC
Q 016446 223 VSRTEFMTPSAFIFL---YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEP 296 (389)
Q Consensus 223 ~l~gh~~~v~sv~fs---pdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG-~~laS~s~D~~ 296 (389)
++.+|...+..+.|+ |||++|++++ |++|||||++ |++++++..|...+. +..++|.+++ .+|+|+|.|
T Consensus 243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~s~d-- 317 (325)
T d1pgua1 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG---NQQVGVVATGNGRIISLSLD-- 317 (325)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG---GCEEEEEEEETTEEEEEETT--
T ss_pred cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc---CeEEEEEECCCCEEEEEECC--
Confidence 999999998887777 8999999998 9999999997 999999988876532 3455555543 478898765
Q ss_pred cccccCCCCCeEEEEeC
Q 016446 297 EDQWMEGSAGSINVSSI 313 (389)
Q Consensus 297 ~~~~~~s~D~tIklWd~ 313 (389)
|+||+||+
T Consensus 318 ---------g~i~vwdl 325 (325)
T d1pgua1 318 ---------GTLNFYEL 325 (325)
T ss_dssp ---------SCEEEEET
T ss_pred ---------CEEEEEEC
Confidence 99999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-35 Score=265.36 Aligned_cols=262 Identities=11% Similarity=0.143 Sum_probs=212.6
Q ss_pred ccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe
Q 016446 4 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 83 (389)
Q Consensus 4 ~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i 83 (389)
..|.++-|.+++||+++.||+|||||+++++++++|.+|. ..|.+|+| ++++|++ ++.| ..+++|++
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~-~~V~~v~~--~~~~l~s----~s~D------~~i~~~~~ 82 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCLQY--DERVIIT----GSSD------STVRVWDV 82 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEEEC--CSSEEEE----EETT------SCEEEEES
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-CCEeeeec--ccceeec----cccc------cccccccc
Confidence 5688888889999999999999999999999999999875 89999877 6789999 4577 88999999
Q ss_pred ccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE---EEEec--CCcEEEEEEcCCceEEEE
Q 016446 84 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS--DKHVQEIKISPGIMLLIF 158 (389)
Q Consensus 84 ~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~---l~tl~--~~~V~~vafS~g~~la~~ 158 (389)
..+.. ... ..........+. +....++++..++++++|+..+... ...+. ...|..+.+.+...+ ++
T Consensus 83 ~~~~~-----~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~ 154 (293)
T d1p22a2 83 NTGEM-----LNT-LIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SA 154 (293)
T ss_dssp SSCCE-----EEE-ECCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE-EE
T ss_pred ccccc-----ccc-cccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceecccccc-cc
Confidence 88875 111 111122334554 5667888999999999999876653 23333 457888888765444 44
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 238 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp 238 (389)
+.|++|++||+.+++++.++.+|...+..+.+. +..+++++.|++|+|||+++++++..+.+|...+.. +++
T Consensus 155 ---s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~ 226 (293)
T d1p22a2 155 ---SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF 226 (293)
T ss_dssp ---ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC
T ss_pred ---cCCCceeeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccc
Confidence 346899999999999999999887777777664 678999999999999999999999999999988864 678
Q ss_pred CCcEEEEEc-CCeEEEEeCC----------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCe
Q 016446 239 ENQLFLTFR-NRTVAVWNFR----------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 307 (389)
Q Consensus 239 dg~~laS~s-D~tIklWd~~----------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~t 307 (389)
++++|++++ |++|++||+. ..++++|.+|... |++|+| |+++|||||. ||+
T Consensus 227 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~-----V~~v~~--d~~~l~s~s~-----------Dg~ 288 (293)
T d1p22a2 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------DDT 288 (293)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------SSE
T ss_pred cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC-----EEEEEE--cCCEEEEEec-----------CCE
Confidence 899999998 9999999952 3578999999987 789988 6789999876 599
Q ss_pred EEEEe
Q 016446 308 INVSS 312 (389)
Q Consensus 308 IklWd 312 (389)
|||||
T Consensus 289 i~iWD 293 (293)
T d1p22a2 289 ILIWD 293 (293)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-36 Score=274.79 Aligned_cols=286 Identities=11% Similarity=-0.008 Sum_probs=207.9
Q ss_pred eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe-eecccCceeEEEecCCC
Q 016446 35 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNG 113 (389)
Q Consensus 35 ~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~-~~~~~~~~~v~Fs~pdG 113 (389)
.+..+++ |.+.|.+|+|||+|+.||++ +.| .+++||++..++.. ..+.. ..+...+.+++|+++++
T Consensus 3 ~v~~~~~-h~d~I~~l~fsp~~~~L~s~----s~D------g~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~f~~~~~ 69 (342)
T d1yfqa_ 3 IVQIEQA-PKDYISDIKIIPSKSLLLIT----SWD------GSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp EEECSSC-CSSCEEEEEEEGGGTEEEEE----ETT------SEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEESSS
T ss_pred eEEcCCC-CCCCEEEEEEeCCCCEEEEE----ECC------CeEEEEEccCCCcc--eEEEEecCCCCCEEEEEEeCCCC
Confidence 4444555 46999999999999999995 477 89999999877641 22221 24566678899995567
Q ss_pred eEEEEecCCCeEEEEeCCCCeEEEEec--C-CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe----ecC
Q 016446 114 KVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLL 185 (389)
Q Consensus 114 ~~Las~s~D~tiklWdl~~g~~l~tl~--~-~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~----~~~ 185 (389)
.+|++|+.|++|++|++..+....... . .......+. ++..++++ +.|+++++||+++++....+. .+.
T Consensus 70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~wd~~~~~~~~~~~~~~~~~~ 146 (342)
T d1yfqa_ 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA---SWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEE---ETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred CEEEEcccccceeeeeccccccccccccccccccccccccccccccccc---ccccccceeeccccccceeeeccccccc
Confidence 899999999999999998888666554 2 233344444 56666665 345899999987655443332 221
Q ss_pred Cc--eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE---EEcccCCCceEEEEE-cCCCcEEEEEc-CCeEEEEeCC-
Q 016446 186 HR--NKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---EVSRTEFMTPSAFIF-LYENQLFLTFR-NRTVAVWNFR- 257 (389)
Q Consensus 186 ~~--~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~---~~l~gh~~~v~sv~f-spdg~~laS~s-D~tIklWd~~- 257 (389)
.. .....+. +.+..+++++.|++|++||+.+++.. .....+...+..+++ ++++..+++++ |+.+++|+++
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~ 225 (342)
T d1yfqa_ 147 TKVKNKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SSSCCCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred ccceeeeeeee-ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence 11 1333333 56788899999999999999876642 233445555666555 56788889998 9999999975
Q ss_pred CcE---------EE------EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 258 GEL---------VT------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 258 G~~---------l~------tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
... .. ...+|... |++|+|||+|++||||+.| |+|||||+++++++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~lasg~~D-----------g~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYP-----VNSIEFSPRHKFLYTAGSD-----------GIISCWNLQTRKKIKNF 289 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCC-----EEEEEECTTTCCEEEEETT-----------SCEEEEETTTTEEEEEC
T ss_pred CcceeeccccceeeeeeeccCCCccccc-----ceeEEecCCccEEEEECCC-----------CEEEEEECCCCcEEEEe
Confidence 211 11 11233333 7999999999999999865 99999999999999999
Q ss_pred cCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 323 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 323 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
..|. .+..++|+|+|+.||+|+.|.++|+|.
T Consensus 290 ~~~~-----------------------------------~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 290 AKFN-----------------------------------EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCS-----------------------------------SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred cCCC-----------------------------------CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 7654 455689999999999999999988885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-35 Score=288.80 Aligned_cols=274 Identities=9% Similarity=0.056 Sum_probs=200.8
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEeccccee------eeeeecCC-----cceEEEEEEeeC-CCEEEEEEEeecCCC
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRR------ICFLNVSP-----DEVIRSLFYNKN-NDSLITVSVYASDNF 70 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~------l~tl~~~~-----~~~v~sv~~spd-g~~l~s~s~~~~~d~ 70 (389)
...|.+|.+.++++++++.|++||||+..+++. ......+. ......+..++. +..+++ ++.|
T Consensus 14 ~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~d- 88 (393)
T d1sq9a_ 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT----TSFS- 88 (393)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE----EETT-
T ss_pred cCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE----EeCC-
Confidence 357899999999999999999999999765432 11112221 111222222222 234444 4567
Q ss_pred cceeeeeeeEeEeccCCCCCcceeEee------ecccCceeEEEecCC-----CeEEEEecCCCeEEEEeCCCCe-----
Q 016446 71 SSLKCRSTKIEYIRRGKPDSGFALFES------ESLKWPGFVEFDDVN-----GKVLTYSAQDSIYKVFDLKNYT----- 134 (389)
Q Consensus 71 ~~l~~~~~~l~~i~~g~~~~~~~l~~~------~~~~~~~~v~Fs~pd-----G~~Las~s~D~tiklWdl~~g~----- 134 (389)
..+++|++..+........... ........++|. ++ +.++++++.|++|++|++....
T Consensus 89 -----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 89 -----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG-ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp -----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE-CCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred -----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEe-cCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 7888898866554211110000 011223446675 43 5789999999999999974211
Q ss_pred ----------EEEEec-----CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEe------ecCCceeEEEE
Q 016446 135 ----------MLYSIS-----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY------HLLHRNKKVDF 193 (389)
Q Consensus 135 ----------~l~tl~-----~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~------~~~~~~~~v~f 193 (389)
...... ...+.+|+|||+++||++ +.|++|||||+++|+++.+++ +|...|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasg---s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG---FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE---CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCCEEEEE---eCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence 111111 246899999987788876 456899999999999987664 57889999999
Q ss_pred EecCCCeEEEEeCCCc---EEEEECCCCeEEEEcc-------------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 016446 194 IEQFNEKLLVKQENEN---LQILDVRNAELMEVSR-------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 256 (389)
Q Consensus 194 ~~~~~~~l~~~s~D~t---IklWd~~tg~~~~~l~-------------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~ 256 (389)
+ |++..|++++.|++ |+|||+++|+++.++. ||...|++++|+|||++|||++ |++|||||+
T Consensus 240 s-pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 240 S-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp C-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred c-cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 8 78999999999875 9999999999988874 8999999999999999999999 999999999
Q ss_pred C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 257 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 257 ~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
+ |+++++|+||...+... ...++|+|+|+.+++++
T Consensus 319 ~~g~~~~~l~gH~~~v~~~-~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIE-EDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTTEEEEEEECCGGGCSSG-GGCCCBCTTSCBCSSCC
T ss_pred CCCCEEEEECCcCCcccCC-ccEEEECCCCCEEEEcc
Confidence 7 99999999999875432 35789999999888754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=8.8e-36 Score=294.76 Aligned_cols=324 Identities=8% Similarity=0.036 Sum_probs=227.6
Q ss_pred EEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 15 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
++++.+.||+|++||..||+++.+|+.+ +.+.+|+|||||++|+++ +.| ..+++||+.+++......+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk~l~~~----~~d------~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGRYLLVI----GRD------ARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSCEEEEE----ETT------SEEEEEETTSSSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEE----eCC------CCEEEEEccCCceeEEEEE
Confidence 5688889999999999999999999986 469999999999999985 366 7899999999986221111
Q ss_pred Ee-eecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEecC-------------CcEEEEEEc-CCceEEEE
Q 016446 95 FE-SESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-------------KHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 95 ~~-~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~~-------------~~V~~vafS-~g~~la~~ 158 (389)
-. .++.+.+.+++|+ |||++| +++..|+++++||.++++++..+.. .....++++ ++..++.+
T Consensus 102 ~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 102 KIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp ECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred eCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence 11 1223334457787 899986 5556899999999999998766531 245667777 56665555
Q ss_pred ecCCCCeeEEEEEcCCCeEEE-EEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEccc--CCCceEEE
Q 016446 159 NRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT--EFMTPSAF 234 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~-tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~g--h~~~v~sv 234 (389)
..+ .+.+.+++..+++.+. +...+......++|. |++.+++++. .+..+.+||..+++++..... +.......
T Consensus 181 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (426)
T d1hzua2 181 VKE--TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257 (426)
T ss_dssp ETT--TTEEEEEECSSSSSCEEEEEECCSSEEEEEEC-TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred cCC--CCeEEEEEeccccceeeEEeccCCccEeeeEC-CCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence 333 3566667766655433 333567788999998 6778777765 788999999999999776532 22223333
Q ss_pred EEcCCC--cEEEEE-c-CCeEEEEeCC--------CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 235 IFLYEN--QLFLTF-R-NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 235 ~fspdg--~~laS~-s-D~tIklWd~~--------G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
.|.+++ ...+.. + |+++.+|+.. +++..+|++|... +++|+|||||++|+....-. ..+
T Consensus 258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~-----v~~v~~sPdg~~l~v~~~~~----~s~ 328 (426)
T d1hzua2 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTFN----PDA 328 (426)
T ss_dssp EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC-----CCCEECCTTCSEEEECCTTC----SSH
T ss_pred eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc-----eeEEEcCCCCceEEEeecCC----CCc
Confidence 343322 233222 3 7788777742 5899999999876 79999999999999532100 012
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE-EE----
Q 016446 303 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YT---- 377 (389)
Q Consensus 303 s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L-aS---- 377 (389)
+.|++|+|||+.+++++.++..+.. +..+.++...|++++|||||+.| +|
T Consensus 329 ~~~~tv~vwd~~t~~~~~~~~~~~~-------------------------~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~ 383 (426)
T d1hzua2 329 RISQSVAVFDLKNLDAKYQVLPIAE-------------------------WADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383 (426)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHH-------------------------HHCCCSSCCCEEEEEECSSSSEEEEEECCC
T ss_pred ccCCEEEEEECCCCCcCeEEeccch-------------------------hcccCCCCccEEEEEECCCCCEEEEEEecC
Confidence 3468999999999998887754320 00111222589999999999866 44
Q ss_pred ecCCCcEEEcc
Q 016446 378 GNRHGLVHVWS 388 (389)
Q Consensus 378 gs~D~tIrlW~ 388 (389)
++.|++|+|||
T Consensus 384 ~~~~~~i~v~D 394 (426)
T d1hzua2 384 KNDSSALVVVD 394 (426)
T ss_dssp TTSCCEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 35789999998
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2e-35 Score=276.90 Aligned_cols=306 Identities=10% Similarity=-0.044 Sum_probs=227.6
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|++||.++. |.|.+|+.++|+.++ + +| ...|.+++|||||+.|++++.+ ++ ..+++|++..|++ .
T Consensus 15 G~~~a~~~~-g~v~v~d~~~~~~~~-~-~~-~~~v~~~~~spDg~~l~~~~~~--~g------~~v~v~d~~~~~~---~ 79 (360)
T d1k32a3 15 GDLIAFVSR-GQAFIQDVSGTYVLK-V-PE-PLRIRYVRRGGDTKVAFIHGTR--EG------DFLGIYDYRTGKA---E 79 (360)
T ss_dssp GGCEEEEET-TEEEEECTTSSBEEE-C-SC-CSCEEEEEECSSSEEEEEEEET--TE------EEEEEEETTTCCE---E
T ss_pred CCEEEEEEC-CeEEEEECCCCcEEE-c-cC-CCCEEEEEECCCCCEEEEEEcC--CC------CEEEEEECCCCcE---E
Confidence 888988874 789999998777665 3 44 4899999999999999987642 33 5789999988875 2
Q ss_pred eeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEec-------CC
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNR-------SS 162 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~-------~s 162 (389)
.+ ..+...+..++|+ |||++|++++.|+++++|++.++++...+. ...+.+++|| +|++||.+.. ..
T Consensus 80 ~~--~~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 80 KF--EENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EC--CCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred Ee--eCCCceEEeeeec-ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 22 2355567789998 999999999999999999999999877765 4678999999 6888886642 34
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-------EEEcccCCCceEEEE
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAFI 235 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~-------~~~l~gh~~~v~sv~ 235 (389)
.++.+++||+.++++..... |...+..++|+ |++..|+.++.|+++++||.....+ ...+..|...+..++
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATT-ENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp CEEEEEEEETTTTEEEECSC-SSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred cccceeeeccccCceeeecc-ccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence 56789999999988766554 55777889998 7899999999999999999876543 344556777777788
Q ss_pred EcCCCcEEEEEc-CCe---EEEEeC--CCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 236 FLYENQLFLTFR-NRT---VAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 236 fspdg~~laS~s-D~t---IklWd~--~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
|+|+++.++++. +.. .++|.+ .+.....+..+.... ..+...++++++.++++++ .++.|+
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~i~ 301 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI--LIYSVPVHGEFAAYYQGAP-----------EKGVLL 301 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE--EEEECCCCCSHHHHHHCCC-----------CCEEEE
T ss_pred ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc--eEEEEEecCCCeeEEEecC-----------CCCEEE
Confidence 899999888775 432 344544 322222333333220 0022333344444555544 469999
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
+||+.++++. .|. ..|.+++|||||++||+++.||+|++||.
T Consensus 302 ~~d~~~~~~~----~~~----------------------------------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 302 KYDVKTRKVT----EVK----------------------------------NNLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEETTTCCEE----EEE----------------------------------EEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred EEECCCCeEE----Eec----------------------------------CCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 9999987753 333 36899999999999999999999999983
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.5e-32 Score=274.91 Aligned_cols=332 Identities=10% Similarity=0.014 Sum_probs=243.4
Q ss_pred EEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 15 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
++++.+.+|+|+|||.+|++++++++.+ ..+..|+|||||++|++++ .| ..+++||+.+++......+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s----~d------g~v~~~d~~t~~~~~~~~i 101 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTVAEI 101 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEc----CC------CCEEEEEeeCCCceEEEEE
Confidence 3589999999999999999999999986 4699999999999999854 56 7899999988875222112
Q ss_pred Ee-eecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-------------CCcEEEEEEc-CCceEEEE
Q 016446 95 FE-SESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-------------DKHVQEIKIS-PGIMLLIF 158 (389)
Q Consensus 95 ~~-~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-------------~~~V~~vafS-~g~~la~~ 158 (389)
-. .++.+.+.+++|| |||++| |+++.|++|+|||.++++++.++. .....+|+|| +|..++.+
T Consensus 102 ~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs 180 (432)
T d1qksa2 102 KIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180 (432)
T ss_dssp ECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence 11 1222323445676 899976 789999999999999999887653 1357789999 68777666
Q ss_pred ecCCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcc-----cCCCce
Q 016446 159 NRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR-----TEFMTP 231 (389)
Q Consensus 159 ~~~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~-----gh~~~v 231 (389)
. ..+++|.+||..+++.++... .+......++|+ |++.++++++ .+++|.++|.++++....+. .|....
T Consensus 181 ~--~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~ 257 (432)
T d1qksa2 181 V--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257 (432)
T ss_dssp E--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred E--ccCCeEEEEEccCCCcceEEEEcccCccccceEC-CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence 4 345899999999998776555 344566889998 7888888865 77899999999999877653 255666
Q ss_pred EEEEEcCCCcEEEEEc--CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEE
Q 016446 232 SAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 309 (389)
Q Consensus 232 ~sv~fspdg~~laS~s--D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIk 309 (389)
..+.+++.|...++.. |++|.+|+.... .+.+|... |..++|+|+|+.+++++.| ++++
T Consensus 258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---~~~~~~~~-----v~~~~~~~~g~~~~~~s~p-----------~~~~ 318 (432)
T d1qksa2 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPE---GHPDNAWK-----ILDSFPALGGGSLFIKTHP-----------NSQY 318 (432)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTT---TCTTTBTS-----EEEEEECSCSCCCCEECCT-----------TCSE
T ss_pred cceecCCCCceecccccCCceEEecccccc---cccccccE-----EEEEEEcCCCCeEEEEecC-----------Cccc
Confidence 7777888888888885 899999987622 13455443 7889999999999988654 6788
Q ss_pred EEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceec-----ccccccCCEEEEEECCCCCEEEEec-----
Q 016446 310 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-----TVGEALEDITSLFYDEERNEIYTGN----- 379 (389)
Q Consensus 310 lWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~V~svafSpdg~~LaSgs----- 379 (389)
||+..+. ..|... ...+.++++...++...+++.++|+ .+.++...|.+++|||||++|+.+.
T Consensus 319 lw~~~~~------~~~~~~-~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~ 391 (432)
T d1qksa2 319 LYVDATL------NPEAEI-SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKD 391 (432)
T ss_dssp EEEECTT------CSSHHH-HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTT
T ss_pred eeecccC------CCCCCe-eeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCC
Confidence 8875443 222210 0112234444455555555555553 3445667899999999999885543
Q ss_pred CCCcEEEcc
Q 016446 380 RHGLVHVWS 388 (389)
Q Consensus 380 ~D~tIrlW~ 388 (389)
.|+.|+|||
T Consensus 392 ~~g~i~i~D 400 (432)
T d1qksa2 392 QESALVVVD 400 (432)
T ss_dssp SCCEEEEEE
T ss_pred CCCcEEEEE
Confidence 578899998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-32 Score=252.46 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=204.9
Q ss_pred cccEEEEEeeccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeE
Q 016446 3 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 82 (389)
Q Consensus 3 ~~~v~~i~~~~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~ 82 (389)
+..|..|.|+. ||+++.||+|++||..+++ .+| ...|.+++|+|++. ++++ +.| .++++|+
T Consensus 13 ~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h-~~~V~~~~~~~~~~-~~s~----s~D------~~v~~w~ 73 (287)
T d1pgua2 13 NKGITALTVNP--LISGSYDGRIMEWSSSSMH-----QDH-SNLIVSLDNSKAQE-YSSI----SWD------DTLKVNG 73 (287)
T ss_dssp SSCEEEEETTT--TEEEETTSCEEETTTTEEE-----CCC-CSCEEEEECCSTTC-CEEE----ETT------TEEEETT
T ss_pred CCceEEEEECc--EEEEeCCCeEEEEECCCCC-----CCC-CCCEEEEEecCCCe-EEEE----eec------ccccccc
Confidence 45788888865 9999999999999997654 344 58999999998655 6774 466 6778888
Q ss_pred eccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC-CcEEEEEEc-CCceEEEEec
Q 016446 83 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNR 160 (389)
Q Consensus 83 i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~-~~V~~vafS-~g~~la~~~~ 160 (389)
+...+. ...|..++++ +++..+++++ ++.+.+|+..+++++.++.. ..+. +|+ ++..++++..
T Consensus 74 ~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~ 138 (287)
T d1pgua2 74 ITKHEF-----------GSQPKVASAN-NDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLE 138 (287)
T ss_dssp EEEEEC-----------SSCEEEEEEC-SSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEET
T ss_pred cccccc-----------ccceeeeeec-cCCceEEEee-cccceeeeccceeeeeeccccceee--eeeccCcceeeecc
Confidence 765432 1234568886 8898888765 56788999999999888863 4444 455 4566666643
Q ss_pred CCCCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE-EcccCCCceEEEEEcC
Q 016446 161 SSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLY 238 (389)
Q Consensus 161 ~s~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~-~l~gh~~~v~sv~fsp 238 (389)
+ +++|++|++.+.+....+. .|.+.+..++|+ |++.+|++++.|++|++||+.+++.+. .+.+|...|.+++|+|
T Consensus 139 ~--~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 139 E--GNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp T--TSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred c--cceeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeecccccccccccccccccceeeecc
Confidence 3 4689999998877777665 466788999998 788999999999999999999998765 4789999999999987
Q ss_pred C----------CcEEEEEc-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCC
Q 016446 239 E----------NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 305 (389)
Q Consensus 239 d----------g~~laS~s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D 305 (389)
+ +++|||++ |++|+|||++ ++++..+.+|... |++|+|+||++ |+|++. |
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~-----V~~v~~~~~~~-l~s~g~-----------D 278 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-----VNNLLWETPST-LVSSGA-----------D 278 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-----EEEEEEEETTE-EEEEET-----------T
T ss_pred cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC-----eEEEEECCCCE-EEEEEC-----------C
Confidence 5 56899999 9999999984 6789999999987 89999999975 777765 4
Q ss_pred CeEEEEeC
Q 016446 306 GSINVSSI 313 (389)
Q Consensus 306 ~tIklWd~ 313 (389)
++|||||+
T Consensus 279 ~~v~iW~i 286 (287)
T d1pgua2 279 ACIKRWNV 286 (287)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=251.32 Aligned_cols=285 Identities=7% Similarity=0.068 Sum_probs=205.1
Q ss_pred cccEEEEEee--ccEEEEEecCceEEEEecccceee---eeeecCCcceEEEEEEeeCCC-EEEEEEEeecCCCcceeee
Q 016446 3 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 3 ~~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l---~tl~~~~~~~v~sv~~spdg~-~l~s~s~~~~~d~~~l~~~ 76 (389)
+..|..|.|+ +++||+++.||+||+||++++.+. ....+| ...|.+|+|+|++. .|++ ++.| .
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h-~~~V~~v~f~~~~~~~l~s----g~~d------~ 79 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNTDLQIYV----GTVQ------G 79 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESSSEEEEE----EETT------S
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCC-CCCEEEEEEeCCCCCEEEE----cccc------c
Confidence 4579999999 999999999999999998765432 223344 58999999999865 5666 4577 8
Q ss_pred eeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE----EEEecC----CcEEEEE
Q 016446 77 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISD----KHVQEIK 148 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~----l~tl~~----~~V~~va 148 (389)
.+++|++..+... ...............+. +++..+++++.|+++++||+.++.. ...... .....+.
T Consensus 80 ~v~~w~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 80 EILKVDLIGSPSF---QALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp CEEEECSSSSSSE---EECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred ceeeeeccccccc---ccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 8999998776641 11111111111234444 7788999999999999999865442 223321 2344556
Q ss_pred Ec-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe---ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----
Q 016446 149 IS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---- 220 (389)
Q Consensus 149 fS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~---~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~---- 220 (389)
+. .+..+++++ .|++|++||+.+++...... .+......+.+.+.++..+++++.|+.+++|++.....
T Consensus 156 ~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~ 232 (342)
T d1yfqa_ 156 MDTNSSRLIVGM---NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEECSSEEEEEE---STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred eeccCCceeeec---CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence 66 566777664 45899999998877554332 33344566666656677888899999999999865432
Q ss_pred -----EE------EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE
Q 016446 221 -----ME------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 287 (389)
Q Consensus 221 -----~~------~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~ 287 (389)
.. ...+|...|++++|+|++++||||+ ||+|+|||++ +++++++..|.. +..++|+|+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~------~~~~~~s~~~~~ 306 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNI 306 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS------SEEEEEEECSSE
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC------CEEEEEEeCCCE
Confidence 11 1246777899999999999999999 9999999997 999999975533 467899999999
Q ss_pred EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 288 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 288 laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
||+++.| +++|+|... ..++..|.
T Consensus 307 l~~a~sd-----------d~~~~~~~~----~~~~~~~~ 330 (342)
T d1yfqa_ 307 LCLATSD-----------DTFKTNAAI----DQTIELNA 330 (342)
T ss_dssp EEEEEEC-----------THHHHCSSS----CTTSCCCC
T ss_pred EEEEEcC-----------CcEEEeeee----CCCccCCC
Confidence 9998865 789999743 22455565
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=100.00 E-value=5.8e-30 Score=234.02 Aligned_cols=254 Identities=10% Similarity=0.095 Sum_probs=210.0
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CC
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PG 152 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g 152 (389)
..|.+||+.++++. -+...-..|..++|| |||++| ++++.+++|++||+++++++.++. ...+..++|+ ++
T Consensus 12 ~~v~v~D~~t~~~~-----~~i~~g~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
T d1l0qa2 12 DNISVIDVTSNKVT-----ATIPVGSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (301)
T ss_dssp TEEEEEETTTTEEE-----EEEECSSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEE-----EEEECCCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence 67899999999862 222233567889998 999977 688899999999999999999887 4678999999 67
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCce
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v 231 (389)
..++++. ..+..+++|+..+++++..+..+ .....+.|+ |++..++.. ..|+++.+|+..+++++..+..+. .+
T Consensus 86 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (301)
T d1l0qa2 86 KQVYVTN--MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SP 160 (301)
T ss_dssp SEEEEEE--TTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SE
T ss_pred ccccccc--cccceeeecccccceeeeecccc-ccceEEEee-cCCCeeeeeeccccceeeeeccccceeeecccCC-Cc
Confidence 7776664 44589999999999999999854 556778887 778777664 589999999999999999877654 68
Q ss_pred EEEEEcCCCcEEEEEc--CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeE
Q 016446 232 SAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 308 (389)
Q Consensus 232 ~sv~fspdg~~laS~s--D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tI 308 (389)
..++++|+++.++.+. ++.+.+|+.. .++...+..+.. ...++|+|+|+.++.++.+ ..+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~v~~~~--------~~~~~v 226 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNVD--------KYFNTV 226 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEEC--------SSCCEE
T ss_pred eEEEeeccccceeeecccccccccccccceeeeecccccCC------cceeecccccccccccccc--------ceeeee
Confidence 8999999999888885 5788888887 777777776654 4789999999999877654 356899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEE-EEecCCCcEEEc
Q 016446 309 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVW 387 (389)
Q Consensus 309 klWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~L-aSgs~D~tIrlW 387 (389)
++||+.+++++.++..+. .+++|+|||||++| ++++.|++|++|
T Consensus 227 ~v~D~~t~~~~~~~~~~~-----------------------------------~~~~va~spdg~~l~va~~~~~~i~v~ 271 (301)
T d1l0qa2 227 SMIDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFCNTVSVI 271 (301)
T ss_dssp EEEETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeeecCCCeEEEEEcCCC-----------------------------------CEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 999999999999987664 68999999999987 688999999999
Q ss_pred cC
Q 016446 388 SN 389 (389)
Q Consensus 388 ~~ 389 (389)
|.
T Consensus 272 D~ 273 (301)
T d1l0qa2 272 DT 273 (301)
T ss_dssp ET
T ss_pred EC
Confidence 83
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=100.00 E-value=1.6e-29 Score=231.00 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=216.3
Q ss_pred EEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe
Q 016446 17 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 96 (389)
Q Consensus 17 a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~ 96 (389)
++.+.|++|++||.+|++.++++... ...+.|+|||||++|+.+ +..+ ..+++||+.+++. +..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~---~~~~------~~i~v~d~~t~~~-----~~~ 69 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVA---NAHS------NDVSIIDTATNNV-----IAT 69 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEE---EGGG------TEEEEEETTTTEE-----EEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEE---ECCC------CEEEEEECCCCce-----eee
Confidence 46789999999999999999999875 457899999999988643 3455 6899999988876 222
Q ss_pred eecccCceeEEEecCCCe-EEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcC
Q 016446 97 SESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE 173 (389)
Q Consensus 97 ~~~~~~~~~v~Fs~pdG~-~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~ 173 (389)
......+..++|+ ++|+ .++++..++.+++|+..+++++..+. ......++|+ +|..++.+. ..+.++.+|+..
T Consensus 70 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~ 146 (301)
T d1l0qa2 70 VPAGSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTV 146 (301)
T ss_dssp EECSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETT
T ss_pred eeccccccccccc-cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeee--ccccceeeeecc
Confidence 2233456789998 7776 55677789999999999999988886 4678999999 677776653 456899999999
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc----C
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----N 248 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s----D 248 (389)
+++++.++..+ .....+++. +++..++++. .++.+.+|+....+....+..+ ..+..++|+|+|+.++.+. +
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 147 TKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp TTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSC
T ss_pred ccceeeecccC-CCceEEEee-ccccceeeecccccccccccccceeeeeccccc-CCcceeecccccccccccccccee
Confidence 99999999854 556788887 6777777765 6688889999888888877655 4678899999999876552 5
Q ss_pred CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 249 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 249 ~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
++|++||.. ++++.++..+.. +..++|||||++| ++++. |++|++||+++|++++++.
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~~------~~~va~spdg~~l~va~~~-----------~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------CNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEE
T ss_pred eeeeeeecCCCeEEEEEcCCCC------EEEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCeEEEEEe
Confidence 799999996 999998876543 5899999999987 45443 5899999999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.98 E-value=1.1e-30 Score=257.94 Aligned_cols=301 Identities=8% Similarity=-0.036 Sum_probs=212.5
Q ss_pred ccEEEEEee--ccEEEEEecCceEEEEecccceeeee--e---ecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeee
Q 016446 4 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF--L---NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 76 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~l~t--l---~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~ 76 (389)
..|..|.|+ |++|+++++|+++++||++|+++... + .++ .+.+.+++|||||++|+.++ ..+ .
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~-~~~~~s~~~spDG~~l~v~~---~~~------~ 131 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVESSKFKGYEDRYTIAGA---YWP------P 131 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEEECCSTTCTTTEEEEEE---EES------S
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC-cceEEeeeecCCCCEEEEee---cCC------C
Confidence 358899999 99999999999999999999885543 2 233 47888999999999987754 355 7
Q ss_pred eeeEeEeccCCCCCcceeEee-------ecccCceeEEEecCCCeEEEEe-cCCCeEEEEeCCCCeE--EEEe-cCCcEE
Q 016446 77 STKIEYIRRGKPDSGFALFES-------ESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTM--LYSI-SDKHVQ 145 (389)
Q Consensus 77 ~~~l~~i~~g~~~~~~~l~~~-------~~~~~~~~v~Fs~pdG~~Las~-s~D~tiklWdl~~g~~--l~tl-~~~~V~ 145 (389)
.+++||..++++......... ..-+....++++ +|++++... ...+.+.+++..++.. +... .+..++
T Consensus 132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 889999988876211110000 011222335555 555544433 2345555555554442 2222 357899
Q ss_pred EEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee--cCCceeEEEEEecCCCeEEEE--eCCCcEEEEECCC---
Q 016446 146 EIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN--- 217 (389)
Q Consensus 146 ~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~--~~~~~~~v~f~~~~~~~l~~~--s~D~tIklWd~~t--- 217 (389)
+++|+ +|++++++... +..+.+++..+++++..... +.+....+.|..+......+. +.|+++.+|+...
T Consensus 211 ~~~~~~~g~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~ 288 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288 (426)
T ss_dssp EEEECTTSCEEEEEETT--CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred eeeECCCCcEEEeeeec--ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc
Confidence 99999 68888777533 47899999999999998873 223345566654433334333 4789999998654
Q ss_pred ----CeEEEEcccCCCceEEEEEcCCCcEEE-------EEc-CCeEEEEeCC-CcEEEEecc------CcCCcCCCCeeE
Q 016446 218 ----AELMEVSRTEFMTPSAFIFLYENQLFL-------TFR-NRTVAVWNFR-GELVTSFED------HLLWHPDCNTNN 278 (389)
Q Consensus 218 ----g~~~~~l~gh~~~v~sv~fspdg~~la-------S~s-D~tIklWd~~-G~~l~tl~g------h~~~~~~~~v~s 278 (389)
+++..++.+|...+++++|+|||++|+ +++ |+||+|||++ |+++.++.. |.... ..|..
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~--~rv~~ 366 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA--KRVVQ 366 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC--CCEEE
T ss_pred ccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC--ccEEE
Confidence 478999999999999999999999999 466 9999999996 887766532 11111 12789
Q ss_pred EEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 279 IYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 279 v~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
++|||||++| +|+..+ .+.|++|+|||..|++.++.++++.
T Consensus 367 ~~fSpDGk~i~vs~~~~-------~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWNG-------KNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp EEECSSSSEEEEEECCC-------TTSCCEEEEEETTTTEEEEEECCTT
T ss_pred EEECCCCCEEEEEEecC-------CCCCCeEEEEECCCCeEEEEECCCC
Confidence 9999999977 444322 3568999999999999999999885
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=9.6e-30 Score=235.15 Aligned_cols=279 Identities=10% Similarity=0.021 Sum_probs=212.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCC-cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 91 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~-~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~ 91 (389)
.++++++++|++|++||.+++++++++..+. ...+.+++|||||++|+.+ ++.+ ..+.+||+.+|++...
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~---~~~~------~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYAT---VNKS------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEE---ETTT------TEEEEEETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEE---ECCC------CeEEEEECCCCcEEEE
Confidence 3789999999999999999999999998653 2457899999999988553 4566 7899999999987321
Q ss_pred ceeEe-eecccCceeEEEecCCCeEEEEec------------CCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEE
Q 016446 92 FALFE-SESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLL 156 (389)
Q Consensus 92 ~~l~~-~~~~~~~~~v~Fs~pdG~~Las~s------------~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la 156 (389)
..+.. ......+..++|+ |||++|+.+. .+..+.+||..+++++.++. ...+..++|+ +|.+++
T Consensus 72 ~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 150 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150 (337)
T ss_dssp EECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred EecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEE
Confidence 11100 0112345579998 9999998776 47889999999999998887 4678899999 688887
Q ss_pred EEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEe-----------------------cCCCeEEEEeCCCcEEEE
Q 016446 157 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------QFNEKLLVKQENENLQIL 213 (389)
Q Consensus 157 ~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~-----------------------~~~~~l~~~s~D~tIklW 213 (389)
+++ +.+++||+.++++..++..+... ....+.+ .+...+...+.++.+.+|
T Consensus 151 ~~~-----~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (337)
T d1pbyb_ 151 GLG-----RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EES-----SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEc-----CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence 763 34789999999999998753221 1111110 011111222345679999
Q ss_pred ECCCCeEEEE-cccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 214 DVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 214 d~~tg~~~~~-l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
|..++++... +..|...+...+++|++.+++.. |++|++||+. ++++.++. +... +.+++|||||++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dG~~l~v~ 297 (337)
T d1pbyb_ 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHS-----YYSVNVSTDGSTVWLG 297 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSC-----CCEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCC-----EEEEEECCCCCEEEEE
Confidence 9999987654 56788889999999999988654 7999999997 99998886 3333 5899999999999998
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
+.| ++|++||+.++|.+.+++-.
T Consensus 298 ~~~-----------~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 298 GAL-----------GDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SBS-----------SEEEEEETTTCCEEEEEECG
T ss_pred eCC-----------CcEEEEECCCCcEEEEEECC
Confidence 764 89999999999999998643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=3.6e-30 Score=238.93 Aligned_cols=280 Identities=7% Similarity=-0.087 Sum_probs=213.0
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
++++++++++++|.+||++|+++++++...+.....+|+|+|||+.|..+ +..+ ..+.+||+.+++.....
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~---~~~~------~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL---NNHY------GDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEE---ETTT------TEEEEEETTTTEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEE---ECCC------CcEEEEeCccCeeeeee
Confidence 89999999999999999999999999986555678899999999987543 4566 78899999988763111
Q ss_pred eeEe--eecccCceeEEEecCCCeEEEEec------------CCCeEEEEeCCCCeEEEEec----CCcEEEEEEcCCce
Q 016446 93 ALFE--SESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS----DKHVQEIKISPGIM 154 (389)
Q Consensus 93 ~l~~--~~~~~~~~~v~Fs~pdG~~Las~s------------~D~tiklWdl~~g~~l~tl~----~~~V~~vafS~g~~ 154 (389)
..-. ......|..++|+ |||++|..++ .+..+++|+..+++....+. ...+..+.++++..
T Consensus 79 ~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 1000 0122245679998 9999887665 58889999998887553332 35677788886665
Q ss_pred EEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC--------------------------eEEEEeCCC
Q 016446 155 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE--------------------------KLLVKQENE 208 (389)
Q Consensus 155 la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~--------------------------~l~~~s~D~ 208 (389)
+++.+ ..+.+|++.+++.+.++..+ .....+.++ |++. .+.++..++
T Consensus 158 ~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 158 LYVAG-----PDIYKMDVKTGKYTVALPLR-NWNRKGYSA-PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECST-TCCCTTBCC-CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred EEEeC-----CcceEEEccCCCEEEEEecC-CCccceEEe-ccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 55542 35899999999999998754 222333333 2222 122234667
Q ss_pred cEEEEECCCCeEEE-EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCC
Q 016446 209 NLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 286 (389)
Q Consensus 209 tIklWd~~tg~~~~-~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~ 286 (389)
.+.+||+.+++... .+.+|...+..++++|++.+++...++.|++||.. +++++.+.- ... +.+++|||||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~va~s~DG~ 304 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHT-----YYCVAFDKKGD 304 (346)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC-SSC-----CCEEEECSSSS
T ss_pred eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC-CCC-----EEEEEEcCCCC
Confidence 89999999988654 46788899999999999999998888899999996 999888863 222 68999999999
Q ss_pred EEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 287 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 287 ~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+|++++.| ++|++||++++|++.+++-+.
T Consensus 305 ~l~v~~~d-----------~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 305 KLYLGGTF-----------NDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp CEEEESBS-----------SEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEeCC-----------CcEEEEECccCCEEEEEECCC
Confidence 99998764 899999999999999998654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=8e-30 Score=238.38 Aligned_cols=263 Identities=9% Similarity=0.033 Sum_probs=194.4
Q ss_pred EEEecC-CCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 106 VEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 106 v~Fs~p-dG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
=.|| | ||+++|+++ ++.|.|||+++++.++..|...|.+++|| +|+.|++++.+ .+.+|++||+++|+.. .+..
T Consensus 8 ~~fS-P~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~-~g~~v~v~d~~~~~~~-~~~~ 83 (360)
T d1k32a3 8 EDFS-PLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAE-KFEE 83 (360)
T ss_dssp EEEE-ECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET-TEEEEEEEETTTCCEE-ECCC
T ss_pred cccc-CCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcC-CCCEEEEEECCCCcEE-EeeC
Confidence 4698 6 999999987 57999999999988877778899999999 58788776433 3468999999988765 5567
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-----------CCeEE
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----------NRTVA 252 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-----------D~tIk 252 (389)
|...+..++|+ |++.+|++++.|+++++|++.++++.+.+..|...+.+++|+|||++||.+. +++++
T Consensus 84 ~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 84 NLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCceEEeeeec-ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 88999999998 7899999999999999999999999999999999999999999999999542 45799
Q ss_pred EEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCe-------EEEEecCC
Q 016446 253 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-------CLAKINAT 325 (389)
Q Consensus 253 lWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~-------~l~tl~gH 325 (389)
+||..+.....+..|... +..++|||||++|++++.| +++++||..... .+..+..|
T Consensus 163 v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~s~~-----------~~~~~~d~~~~~~~~~~~~~~~~~~~~ 226 (360)
T d1k32a3 163 VYDMEGRKIFAATTENSH-----DYAPAFDADSKNLYYLSYR-----------SLDPSPDRVVLNFSFEVVSKPFVIPLI 226 (360)
T ss_dssp EEETTTTEEEECSCSSSB-----EEEEEECTTSCEEEEEESC-----------CCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred eeccccCceeeecccccc-----cccccccCCCCEEEEEeCC-----------CceEcccccccceeeccccceEEEecc
Confidence 999984444445555544 6899999999999998765 899999976543 34555666
Q ss_pred CCCCCcccccCCCCCCCcccccc---cccee------------cccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 326 NCSPKVDDELGSSSTGKSKKLNK---SSYIR------------STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
...+.....++.+...+....+. ..+++ ...+++...+....++|++.++++++.|+.|++||.
T Consensus 227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 305 (360)
T d1k32a3 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305 (360)
T ss_dssp TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence 65444444444444332222211 01111 111111122233333444456788889999999984
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.8e-29 Score=250.93 Aligned_cols=295 Identities=7% Similarity=-0.003 Sum_probs=201.0
Q ss_pred cEEEEEee--ccEEEEEecCceEEEEeccccee--eeeeec--CCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeee
Q 016446 5 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLNV--SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 78 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~~~~gtiklW~~~tg~~--l~tl~~--~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~ 78 (389)
.|..|.|+ |++++++++||++++||+.|++. ...+.. ++.+.+.+++|||||++|+.++ ..+ ..+
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~---~~~------~~v 133 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA---YWP------PQY 133 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE---EET------TEE
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc---CCC------CeE
Confidence 58899999 99999999999999999988763 333331 2347888999999999986543 355 789
Q ss_pred eEeEeccCCCCCcceeEe-------eecccCceeEEEecCCCeE-EEEecCCCeEEEEeCCCCeEE--EEec-CCcEEEE
Q 016446 79 KIEYIRRGKPDSGFALFE-------SESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTML--YSIS-DKHVQEI 147 (389)
Q Consensus 79 ~l~~i~~g~~~~~~~l~~-------~~~~~~~~~v~Fs~pdG~~-Las~s~D~tiklWdl~~g~~l--~tl~-~~~V~~v 147 (389)
+|||..++++........ ....+.+.+|.|| |||+. +++.+.+++|.+||..+++.+ .+++ +..+.++
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~ 212 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEeCccccceeeeccCCccccceeccCCCceeEEEEC-CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence 999999988732111100 0122334568998 77765 567888999999999988754 4555 5689999
Q ss_pred EEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec---CCceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCe--
Q 016446 148 KIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL---LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAE-- 219 (389)
Q Consensus 148 afS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~---~~~~~~v~f~~~~~~~l~~~s--~D~tIklWd~~tg~-- 219 (389)
+|+ +|.++++++.. +.++.++|..+++.+..+... .+......+..+..+...... .|++|.+|+.....
T Consensus 213 ~~spdg~~~~va~~~--~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~ 290 (432)
T d1qksa2 213 GLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290 (432)
T ss_dssp EECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred eECCCCCEEEEeccc--cceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc
Confidence 999 58888777654 369999999999998887521 122233444434344433332 57788888765432
Q ss_pred -----EEEEcc-------------------------cCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccC
Q 016446 220 -----LMEVSR-------------------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 267 (389)
Q Consensus 220 -----~~~~l~-------------------------gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh 267 (389)
..+.+. .|.....++++ |||+.|++++ |+++|+||+. +.. |.+|
T Consensus 291 ~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~ 366 (432)
T d1qksa2 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEG 366 (432)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSS
T ss_pred ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCC
Confidence 122221 11112223444 7777777777 8888888763 432 2345
Q ss_pred cCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 268 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 268 ~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
... |..++|||||++|+.++.. .+..++.|+|||.+|+++++.+++..
T Consensus 367 ~~~-----v~~~~fS~DG~~v~~S~~~------~~~~~g~i~i~D~~T~k~~~~i~~~~ 414 (432)
T d1qksa2 367 QPR-----VVQGEFNKDGTEVWFSVWN------GKDQESALVVVDDKTLELKHVIKDER 414 (432)
T ss_dssp CCE-----EEEEEECTTSSEEEEEEEC------CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCc-----EEEeEECCCCCEEEEEEec------CCCCCCcEEEEECCCceEEeEecCCC
Confidence 444 7899999999988665431 02346899999999999999998753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=4.8e-29 Score=231.22 Aligned_cols=269 Identities=11% Similarity=0.049 Sum_probs=200.8
Q ss_pred EEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEE
Q 016446 50 LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVF 128 (389)
Q Consensus 50 v~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklW 128 (389)
+||+++|++|+++ +.| .++.+||+.++++....+ ...-..|.+++|+ |||++| ++++.+++|++|
T Consensus 2 ~a~~~~~~~l~~~----~~~------~~v~v~D~~t~~~~~t~~---~~~~~~p~~l~~s-pDG~~l~v~~~~~~~v~~~ 67 (346)
T d1jmxb_ 2 PALKAGHEYMIVT----NYP------NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGI 67 (346)
T ss_dssp CCCCTTCEEEEEE----ETT------TEEEEEETTTTEEEEEEE---CSSCCSSCEEEEC-TTSSEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEE----cCC------CEEEEEECCCCCEEEEEE---cCCCCCcceEEEC-CCCCEEEEEECCCCcEEEE
Confidence 4799999999994 566 789999999998722111 1223457789998 999976 778899999999
Q ss_pred eCCCCeEEEEecC--------CcEEEEEEc-CCceEEEEecC---------CCCeeEEEEEcCCCeEEEEEeecC--Cce
Q 016446 129 DLKNYTMLYSISD--------KHVQEIKIS-PGIMLLIFNRS---------SSHVPLKILSIEDGTVLKVFYHLL--HRN 188 (389)
Q Consensus 129 dl~~g~~l~tl~~--------~~V~~vafS-~g~~la~~~~~---------s~d~tiklWd~~tG~~l~tl~~~~--~~~ 188 (389)
|+.+++.+.++.. ..+..++|| ||++++++..+ ..+..+++|+..+|+..+.+..+. ...
T Consensus 68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T d1jmxb_ 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV 147 (346)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred eCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCce
Confidence 9999999877752 135689999 68888776432 235789999999988776655322 233
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE-------------------------
Q 016446 189 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF------------------------- 243 (389)
Q Consensus 189 ~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l------------------------- 243 (389)
..+.+. +++++++.+ ..+.+||+.+++.+..+..|. .+..++|+|++..+
T Consensus 148 ~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (346)
T d1jmxb_ 148 YLMRAA--DDGSLYVAG--PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 222 (346)
T ss_dssp CCEEEC--TTSCEEEES--SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred EEEEec--CCCEEEEeC--CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence 444442 345555543 568999999999999887654 34555666665543
Q ss_pred -EEEc-CCeEEEEeCC-CcE-EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 244 -LTFR-NRTVAVWNFR-GEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 244 -aS~s-D~tIklWd~~-G~~-l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+++. +..+.+||.. ++. ...+.+|... +..++++|++.+++++.. +.|++||+.+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------------~~v~v~d~~~~~~~ 285 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKTHTQEFADLTEL-----YFTGLRSPKDPNQIYGVL------------NRLAKYDLKQRKLI 285 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSC-----EEEEEECSSCTTEEEEEE------------SEEEEEETTTTEEE
T ss_pred EeeccCCceEEEEECCCCceEEEEeecccce-----eEEEEEeCCCCEEEEecC------------CeEEEEECCCCcEE
Confidence 3344 6678889986 664 4455566654 789999999999998764 58999999999999
Q ss_pred EEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 320 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 320 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+... ..+++++|||||++|++|+.|++|++||.
T Consensus 286 ~~~~~~-----------------------------------~~~~~va~s~DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 286 KAANLD-----------------------------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp EEEECS-----------------------------------SCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred EEEcCC-----------------------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 888632 36889999999999999999999999983
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=3e-27 Score=218.20 Aligned_cols=261 Identities=10% Similarity=0.068 Sum_probs=196.5
Q ss_pred EEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEE
Q 016446 58 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTML 136 (389)
Q Consensus 58 ~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l 136 (389)
+|+++ +.| .++++||+.++++... +-..+....|.+++|| |||++| ++++.|++|++||+++++++
T Consensus 3 ~~vt~----~~d------~~v~v~D~~s~~~~~~--i~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~ 69 (337)
T d1pbyb_ 3 YILAP----ARP------DKLVVIDTEKMAVDKV--ITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEE----ETT------TEEEEEETTTTEEEEE--EECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEE----cCC------CEEEEEECCCCeEEEE--EECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 56774 466 7899999999886221 2212334457789998 999987 67889999999999999998
Q ss_pred EEecC-------CcEEEEEEc-CCceEEEEecC---------CCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCC
Q 016446 137 YSISD-------KHVQEIKIS-PGIMLLIFNRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 199 (389)
Q Consensus 137 ~tl~~-------~~V~~vafS-~g~~la~~~~~---------s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~ 199 (389)
.++.. ..+..++|| +|.+++++... ..+..+.+||..++++++++..+ ..+..++|+ |++.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~ 147 (337)
T d1pbyb_ 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWA-RDGS 147 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEEC-TTSS
T ss_pred EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEc-CCCC
Confidence 87752 235689999 58888766432 13468999999999999999854 567789997 7888
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcE------------------------EEEEc-CCeEEEE
Q 016446 200 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL------------------------FLTFR-NRTVAVW 254 (389)
Q Consensus 200 ~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~------------------------laS~s-D~tIklW 254 (389)
++++++. .+++||..++++..++..+... ....++|++.. +.... ++.+.+|
T Consensus 148 ~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (337)
T d1pbyb_ 148 KLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp CEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence 8888764 4788999999998887554321 22233333332 22233 5679999
Q ss_pred eCC-CcEEE-EeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcc
Q 016446 255 NFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 332 (389)
Q Consensus 255 d~~-G~~l~-tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~ 332 (389)
+.. |++.. .+.+|... +...+++|++.+++++ +++|++||+.+++++.++.. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~i~v~d~~~~~~~~~~~~-~------ 279 (337)
T d1pbyb_ 225 DLETGEMAMREVRIMDVF-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPL-P------ 279 (337)
T ss_dssp ETTTCCEEEEEEEECSSC-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEEC-S------
T ss_pred EcCCCcEEEEEecCCCcc-----eEEEEecccceEEEEc-------------cccEEEEECCCCcEEEEEcC-C------
Confidence 996 77654 34445443 6889999999999876 37999999999999999863 3
Q ss_pred cccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEccC
Q 016446 333 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 389 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~~ 389 (389)
..+.+++|||||++|++|+.|++|++||.
T Consensus 280 ----------------------------~~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 280 ----------------------------HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ----------------------------SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ----------------------------CCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 37889999999999999999999999983
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.94 E-value=2e-23 Score=198.07 Aligned_cols=297 Identities=6% Similarity=-0.109 Sum_probs=203.3
Q ss_pred cEEEEEee--ccEEEEE-----ecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeee
Q 016446 5 KVIEIVAA--RDIVFAL-----AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 77 (389)
Q Consensus 5 ~v~~i~~~--~~~~a~~-----~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~ 77 (389)
.+..+.++ |+.+++. +..+.+.+||.++|+.+.+++.+. . ..++|||||++|+.++.....-.....-..
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~ 98 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L--PNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-C--ccEEEcCCCCEEEEEeecCCcccccccceE
Confidence 34555666 7777654 334578899999999999998764 3 379999999999997654332222223378
Q ss_pred eeEeEeccCCCCCcceeEe---eecccCceeEEEecCCCeEEEEe--cCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-C
Q 016446 78 TKIEYIRRGKPDSGFALFE---SESLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-P 151 (389)
Q Consensus 78 ~~l~~i~~g~~~~~~~l~~---~~~~~~~~~v~Fs~pdG~~Las~--s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~ 151 (389)
+.+||+.++++.....+-. .....++..++|+ |||+.++.. ..++.+.+|+..+++.+... ....+++|+ +
T Consensus 99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~ 175 (373)
T d2madh_ 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--SSPTCYHIHPG 175 (373)
T ss_pred EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE-eCCCcEEEEEEcCCCceEEeeccCCeEEEEe--ccceeEEEecC
Confidence 9999999998731111000 0122345668998 899976544 45789999999887765444 345688999 5
Q ss_pred CceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCce----eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE--EEcc
Q 016446 152 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN----KKVDFIEQFNEKLLVKQENENLQILDVRNAELM--EVSR 225 (389)
Q Consensus 152 g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~----~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~--~~l~ 225 (389)
|..+.++ .+.|+++.+|+..++++..+...+.... .........+..++..+.++++.+|+..+++.. ..+.
T Consensus 176 g~~~~v~--~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 253 (373)
T d2madh_ 176 APSTFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCcEEEE--EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeec
Confidence 6655444 2456899999999999998876432221 222232223456677789999999999887643 2233
Q ss_pred cCCC----------ceEEEEEcCCCcEE----------EEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 226 TEFM----------TPSAFIFLYENQLF----------LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 226 gh~~----------~v~sv~fspdg~~l----------aS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
.+.. ....++++|++..+ ++.. +++|.+||.. |+++.++... .. +..++|||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~~-----~~~~a~sp 327 (373)
T d2madh_ 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HD-----VDAISVAQ 327 (373)
T ss_pred cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-CC-----eeEEEECC
Confidence 3322 23345556666554 3444 7889999996 9999988633 32 68999999
Q ss_pred CCCEE--EEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 284 DQDLI--ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 284 dG~~l--aS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
||+++ ++++. |++|++||+.+|+.++++.+|.
T Consensus 328 DG~~~l~vt~~~-----------d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 328 DGGPDLYALSAG-----------TEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred CCCEEEEEEeCC-----------CCeEEEEECCCCCEEEEECCCC
Confidence 99954 55544 5999999999999999999876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=3.9e-23 Score=195.95 Aligned_cols=291 Identities=8% Similarity=-0.002 Sum_probs=205.4
Q ss_pred cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec---
Q 016446 44 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--- 120 (389)
Q Consensus 44 ~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s--- 120 (389)
...+.+++++|||++++.+.. +..+ ...++.++|..+|++ +.+. ..+....++|| |||++|+.++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~-~~~~----~~~~v~v~D~~tg~~-----~~~~-~~~~~~~~a~S-pDG~~l~va~~~~ 87 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLP-AHHS----AIIQQWVLDAGSGSI-----LGHV-NGGFLPNPVAA-HSGSEFALASTSF 87 (373)
T ss_pred CCCccccccCCCCCEEEEEcc-cccC----CCceEEEEECCCCCE-----EEEE-eCCCCccEEEc-CCCCEEEEEeecC
Confidence 478999999999999876432 1111 013577788899986 2221 12233469998 9999999875
Q ss_pred -------CCCeEEEEeCCCCeEEEEec--CCc-------EEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 121 -------QDSIYKVFDLKNYTMLYSIS--DKH-------VQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 121 -------~D~tiklWdl~~g~~l~tl~--~~~-------V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
.+++|++||+.+++++..+. ... ...++|+ +|..++.... ..+..+.+|+..+++.+....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~- 165 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVVQGGSSDDQLLS- 165 (373)
T ss_pred CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE-cCCCceEEeeccCCeEEEEec-
Confidence 46889999999999887764 222 2557888 6776665543 335789999999888776654
Q ss_pred cCCceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEEEEccc------CCCceEEEEEcCCCcEEEEEcCCeEEEEeC
Q 016446 184 LLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRT------EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 256 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l-~~~s~D~tIklWd~~tg~~~~~l~g------h~~~v~sv~fspdg~~laS~sD~tIklWd~ 256 (389)
....+.|+ +++..+ ++.+.|+++.+||..++++..+... +......+.+++++.+++.+.++++.+|+.
T Consensus 166 ---~~~~~~~s-~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 241 (373)
T d2madh_ 166 ---SPTCYHIH-PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI 241 (373)
T ss_pred ---cceeEEEe-cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEc
Confidence 34567787 566544 5678999999999999998776543 333455677888888776666999999998
Q ss_pred C-CcE--EEEeccCcCCc------CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCC
Q 016446 257 R-GEL--VTSFEDHLLWH------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 327 (389)
Q Consensus 257 ~-G~~--l~tl~gh~~~~------~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~ 327 (389)
. ++. +.++..+.... +. ....++++|||.+++....+. ........+++|.+||+.+|+.+..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-- 317 (373)
T d2madh_ 242 SAAGATNKAPIDALSGGRKADTWRPG-GWQQVAYLKSSDGIYLLTSEQ-SAWKLHAAAKEVTSVTGLVGQTSSQISLG-- 317 (373)
T ss_pred CCCeEEEEEeeccccCcEEeeeeccC-cceeeEEecCCCeEEEecCCC-ceEEeecCCCeEEEEECCCCcEEEEecCC--
Confidence 6 442 33443332210 00 134678888888877654321 11244455689999999999999988643
Q ss_pred CCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCE--EEEecCCCcEEEccC
Q 016446 328 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWSN 389 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~--LaSgs~D~tIrlW~~ 389 (389)
..+.+++|||||+. +++++.|++|++||.
T Consensus 318 ---------------------------------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 318 ---------------------------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ---------------------------------CCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 37899999999994 479999999999984
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.4e-24 Score=201.15 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=197.0
Q ss_pred ccEEEEE-----ecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 13 RDIVFAL-----AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 13 ~~~~a~~-----~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
+..+++. +.+.++.+||..+|+.+.++..+. . ..++|||||++|+.++.....-...-+-..+++||+.+|+
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-L--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-S--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-C--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 6666654 346689999999999999998764 3 3799999999998876532211111122689999999988
Q ss_pred CCCcceeEe---eecccCceeEEEecCCCeEEEEe--cCCCeEEEEeCCCCeEEEEecCC---------cEEEEEEc-CC
Q 016446 88 PDSGFALFE---SESLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDK---------HVQEIKIS-PG 152 (389)
Q Consensus 88 ~~~~~~l~~---~~~~~~~~~v~Fs~pdG~~Las~--s~D~tiklWdl~~g~~l~tl~~~---------~V~~vafS-~g 152 (389)
+.....+.. ......+..++|+ |||++++.+ +.+..+++|+..+++.+.++... ....++|+ +|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 168 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 168 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCC
Confidence 732111110 0122345669998 899977655 56789999999999988777521 23456777 56
Q ss_pred ceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE--EcccCC--
Q 016446 153 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEF-- 228 (389)
Q Consensus 153 ~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~--~l~gh~-- 228 (389)
..++... ..+.++.+.+..+.+. .+...+....+. +++..++..+.++++.+||+.++++.. ...+|.
T Consensus 169 ~~~~v~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 169 SLAKVAF--GTEGTPEITHTEVFHP-----EDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp CEEEEEC--CSSSCCEEEECCCCSC-----TTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred CEEEEEe--cCCCeEEEEecccccc-----eecceeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence 6665542 2234556666554332 222334556676 567888889999999999999886532 222221
Q ss_pred --------CceEEEEEcCCCcEEEEEc-C----------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE-
Q 016446 229 --------MTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL- 287 (389)
Q Consensus 229 --------~~v~sv~fspdg~~laS~s-D----------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~- 287 (389)
.....++++||+..+.... + .+|.+||.. ++.+.+++.+.. +.+++|||||+.
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~------~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE------IDSINVSQDEKPL 314 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCE
T ss_pred eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC------EEEEEEcCCCCeE
Confidence 2234588999999887654 3 479999996 999998875433 589999999983
Q ss_pred -EEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 288 -IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 288 -laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+++++ .|++|++||+++|+++++|.++-
T Consensus 315 l~v~~~-----------~d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 315 LYALST-----------GDKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp EEEEET-----------TTTEEEEEETTTCCEEEEECCCC
T ss_pred EEEEEC-----------CCCEEEEEECCCCCEEEEEeCcC
Confidence 44543 35999999999999999998764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5e-23 Score=190.57 Aligned_cols=279 Identities=10% Similarity=0.043 Sum_probs=187.7
Q ss_pred cEE-EEEecCceEEEEecccce---eeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCC
Q 016446 14 DIV-FALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 89 (389)
Q Consensus 14 ~~~-a~~~~~gtiklW~~~tg~---~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~ 89 (389)
|+| +++++|++|++|++++.. .+++++ +. ..+.+|+|||||++|+.+ +..| ..+.+|++..++.
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~-~~v~~la~spDG~~L~v~---~~~d------~~i~~~~i~~~~~- 71 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVD-VP-GQVQPMVVSPDKRYLYVG---VRPE------FRVLAYRIAPDDG- 71 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CS-SCCCCEEECTTSSEEEEE---ETTT------TEEEEEEECTTTC-
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEc-CC-CCEeEEEEeCCCCEEEEE---ECCC------CeEEEEEEeCCCC-
Confidence 444 677799999999986543 334444 33 789999999999999654 3456 7888999876553
Q ss_pred CcceeEee-ecccCceeEEEecCCCeEEEEecC-CCeEEEEeCCCCeEEEEe----cCCcEEEEEEc-CCceEEEEecCC
Q 016446 90 SGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSI----SDKHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 90 ~~~~l~~~-~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl~~g~~l~tl----~~~~V~~vafS-~g~~la~~~~~s 162 (389)
...+..+ .....|..++|+ |||++|+.++. +++|++|+.......... +...+.+++|+ ++++++.++..
T Consensus 72 -~~~~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~- 148 (333)
T d1ri6a_ 72 -ALTFAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK- 148 (333)
T ss_dssp -CEEEEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-
T ss_pred -cEEEeeecccCCCceEEEEc-CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-
Confidence 1222222 233447789998 99999888874 789999998776644332 24578899999 57777766433
Q ss_pred CCeeEEEEEcCCCeEEEEEe------ecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCe----EEEEc------c
Q 016446 163 SHVPLKILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE----LMEVS------R 225 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~----~~~~l------~ 225 (389)
+..|++|+..+........ ........++|. +++..+... ...+...+|+..... ..+.+ .
T Consensus 149 -~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 226 (333)
T d1ri6a_ 149 -QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 226 (333)
T ss_dssp -GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred -cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCC
Confidence 4689999987654332221 223344788887 556666554 477888888865422 22221 1
Q ss_pred cCCCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccC
Q 016446 226 TEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 302 (389)
Q Consensus 226 gh~~~v~sv~fspdg~~laS~-s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~ 302 (389)
.....+..++++||++++... . ++++.+|++. ...+..+.++.... ..+.+++|||||++|+.++.+
T Consensus 227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~a~spDGk~l~va~~~-------- 296 (333)
T d1ri6a_ 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQK-------- 296 (333)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTT--------
T ss_pred CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCC--CCeeEEEEeCCCCEEEEEECC--------
Confidence 234567788999999977766 4 8899999985 33333333332110 114789999999998887654
Q ss_pred CCCCeEEEE--eCCCCeEEEE
Q 016446 303 GSAGSINVS--SILTGKCLAK 321 (389)
Q Consensus 303 s~D~tIklW--d~~tg~~l~t 321 (389)
+++|++| |.++|++..+
T Consensus 297 --~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 297 --SHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp --TCEEEEEEEETTTTEEEEE
T ss_pred --CCeEEEEEEECCCCcEEEE
Confidence 5899999 6678876443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=8.7e-22 Score=182.11 Aligned_cols=270 Identities=12% Similarity=0.121 Sum_probs=187.4
Q ss_pred ecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEe----c
Q 016446 66 ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSI----S 140 (389)
Q Consensus 66 ~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl----~ 140 (389)
++++ ++|++|++...... ..+-..++.+.|..++|| |||++| +++..|++|++|++.......++ .
T Consensus 10 ~~~~------~~I~v~~~~~~~~l--~~~~~~~~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~ 80 (333)
T d1ri6a_ 10 SPES------QQIHVWNLNHEGAL--TLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 80 (333)
T ss_dssp EGGG------TEEEEEEECTTSCE--EEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCC------CcEEEEEEcCCCCe--EEEEEEcCCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc
Confidence 4677 89999999654321 112223566778899998 999988 66667999999999765432222 2
Q ss_pred -CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEEecCCCeEEEEe-CCCcEEEEEC
Q 016446 141 -DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV 215 (389)
Q Consensus 141 -~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~ 215 (389)
...+..++|| +|++|++++. .+.+|++|+...+....... .+...+..+.|+ |++.+++.++ .+..|++|+.
T Consensus 81 ~~~~p~~l~~spDg~~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 81 LPGSLTHISTDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp CSSCCSEEEECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEE
T ss_pred cCCCceEEEEcCCCCEEeeccc--CCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccceeeEEEe
Confidence 4568889999 6888888753 35799999988776655443 455667889997 7788877766 7788999998
Q ss_pred CCCeEEE------EcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC--Cc---EEEEeccCcC-CcCCCCeeEEEE
Q 016446 216 RNAELME------VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE---LVTSFEDHLL-WHPDCNTNNIYI 281 (389)
Q Consensus 216 ~tg~~~~------~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~--G~---~l~tl~gh~~-~~~~~~v~sv~f 281 (389)
.+..... ....+...+..++|+|+++++.... .+...+|+.. .. ...++..... .........++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T d1ri6a_ 158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 237 (333)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence 7643221 2234556788999999999987764 7788888874 21 2222221100 001112577899
Q ss_pred CCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccC
Q 016446 282 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 361 (389)
Q Consensus 282 SpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
+|||+++...... ++++++|++.....+..+.++... + .
T Consensus 238 s~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------------~-------------------~ 276 (333)
T d1ri6a_ 238 TPDGRHLYACDRT----------ASLITVFSVSEDGSVLSKEGFQPT------------E-------------------T 276 (333)
T ss_dssp CTTSSEEEEEETT----------TTEEEEEEECTTSCCEEEEEEEEC------------S-------------------S
T ss_pred ecccCceeeeccc----------CCeEEEEEEcCCCCEEEEEEEeCC------------C-------------------C
Confidence 9999998877643 589999998877666666554310 0 3
Q ss_pred CEEEEEECCCCCEEEEe-cCCCcEEEcc
Q 016446 362 DITSLFYDEERNEIYTG-NRHGLVHVWS 388 (389)
Q Consensus 362 ~V~svafSpdg~~LaSg-s~D~tIrlW~ 388 (389)
.+++++|||||++|+.+ +.+++|++|+
T Consensus 277 ~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 277 QPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred CeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 56789999999987665 4679999995
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1e-22 Score=191.02 Aligned_cols=289 Identities=10% Similarity=0.055 Sum_probs=191.1
Q ss_pred eEEEEEEeeCCCEEEEEEEe-ecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec----
Q 016446 46 VIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---- 120 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~-~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s---- 120 (389)
++.-.|.+|||+.+..+... +..+ .++.+||..+|++ +.+ -..+....++|| |||++|+.++
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~------~~v~v~D~~tg~~-----~~~-~~~g~~~~~a~S-pDg~~l~v~~~~~~ 69 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRV-----IGM-IDGGFLPNPVVA-DDGSFIAHASTVFS 69 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEE-----EEE-EEECSSCEEEEC-TTSSCEEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCc------CeEEEEECCCCcE-----EEE-EECCCCCceEEc-CCCCEEEEEeCCCc
Confidence 34445779999998653211 1223 6788999999886 222 122344579998 9999887543
Q ss_pred ------CCCeEEEEeCCCCeEEEEec--C-------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec
Q 016446 121 ------QDSIYKVFDLKNYTMLYSIS--D-------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 184 (389)
Q Consensus 121 ------~D~tiklWdl~~g~~l~tl~--~-------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~ 184 (389)
.|++|++||+++++++.++. . .....++|+ +|.+++..+ .+.+..+++|+..+++.+.++..+
T Consensus 70 ~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 70 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ-FSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE-CSSSCEEEEEETTTTEEEEEEECC
T ss_pred cccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec-CCCCceeeeeecCCCcEeeEEecC
Confidence 48899999999999887663 1 234568999 688877664 345678999999999999998743
Q ss_pred CCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc------ccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 016446 185 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 185 ~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l------~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~ 257 (389)
... ..+. ......++-+.|++..++.......+..+ ..+...+...++++++..++.++ ++++.+|++.
T Consensus 149 ~~~---~~~~-~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (355)
T d2bbkh_ 149 DCY---HIFP-TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224 (355)
T ss_dssp SEE---EEEE-EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred Ccc---eEee-cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence 211 1111 11233333444444444443332221111 23445566678888888888888 9999999997
Q ss_pred -CcE--EEEeccCcC------CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 258 -GEL--VTSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 258 -G~~--l~tl~gh~~------~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
+++ +.+..+|.. ..+. ....++++|||++++..+.+. ........+.+|++||+.+++.+.++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-- 300 (355)
T d2bbkh_ 225 SGDAKFLPAVEALTEAERADGWRPG-GWQQVAYHRALDRIYLLVDQR-DEWRHKTASRFVVVLDAKTGERLAKFEMGH-- 300 (355)
T ss_dssp TSSCEECCCEESSCHHHHHTTEEEC-SSSCEEEETTTTEEEEEEEEC-CTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred CCcEEEEeccCCcccceEeeeeecc-ceEEEEEeCCCCeEEEEeccC-CceeecCCCCeEEEEeCCCCcEEEEecCCC--
Confidence 543 333333321 0011 124689999999998776542 111222234689999999999999987543
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCC--EEEEecCCCcEEEccC
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWSN 389 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~--~LaSgs~D~tIrlW~~ 389 (389)
.+++++|||||+ .+++++.|++|++||.
T Consensus 301 ---------------------------------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 301 ---------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp ---------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred ---------------------------------CEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 688999999998 4578889999999983
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.1e-19 Score=174.07 Aligned_cols=286 Identities=9% Similarity=0.031 Sum_probs=189.7
Q ss_pred ceEEEEEEeeCCCEEEEE-EEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEec---
Q 016446 45 EVIRSLFYNKNNDSLITV-SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--- 120 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~-s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s--- 120 (389)
.....++..|||+....+ .++.... .++.++|..+|++. ..+ ..+....++|+ |||++|+.++
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~------~~~~~~d~~~~~~~--~~~----~~~~~~~~a~s-pDg~~i~~~~~~~ 86 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGT------TENWVSCAGCGVTL--GHS----LGAFLSLAVAG-HSGSDFALASTSF 86 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSS------EEEEEEETTTTEEE--EEE----EECTTCEEEEC-TTSSCEEEEEEEE
T ss_pred CCccccccCCCCcceeEEeeccCCCc------ceEEEEeCCCCcEE--EEE----eCCCCCcceEC-CCCCEEEEEcccC
Confidence 455677889999964322 1222222 45666787777752 111 11222369998 9999988654
Q ss_pred -------CCCeEEEEeCCCCeEEEEec--C-------CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 121 -------QDSIYKVFDLKNYTMLYSIS--D-------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 121 -------~D~tiklWdl~~g~~l~tl~--~-------~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
.|++|++||..+++++..+. . .....++|| ||++|+++.. .++++.+||++++++++++..
T Consensus 87 ~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~~~ 164 (368)
T d1mdah_ 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASDDQLTKS 164 (368)
T ss_dssp TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEEEEEEEC
T ss_pred ccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcEeEEeec
Confidence 48899999999999887763 1 223579999 7989988753 357999999999999999875
Q ss_pred cCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE------EcccCCCceEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 016446 184 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 257 (389)
Q Consensus 184 ~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~------~l~gh~~~v~sv~fspdg~~laS~sD~tIklWd~~ 257 (389)
+.... ..+......++.+.|+++.+|++..+.... .+..+...+..+.+.++|..+.+. ++.+.+.+..
T Consensus 165 ~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~ 239 (368)
T d1mdah_ 165 ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIP 239 (368)
T ss_dssp SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECC
T ss_pred cCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEeec
Confidence 42221 121224556667899999999987655422 234566677788999999877654 4556666665
Q ss_pred -CcE--EEEeccCcC------CcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCC
Q 016446 258 -GEL--VTSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 328 (389)
Q Consensus 258 -G~~--l~tl~gh~~------~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~ 328 (389)
++. +....++.. +.+. ....++++|+++.+.....+. ..........|++||..+++++.++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~v~~~~~--~~~~~~~~~~v~v~D~~t~~~~~~~~~~--- 313 (368)
T d1mdah_ 240 AAGATMKAAIDGNESGRKADNFRSA-GFQMVAKLKNTDGIMILTVEH--SRSCLAAAENTSSVTASVGQTSGPISNG--- 313 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEEC-SSSCEEEETTTTEEEEEEEEC--SSCTTSCEEEEEEEESSSCCEEECCEEE---
T ss_pred CCceEEEeecccccceeeeeeecCC-CceeEEEcCCCCEEEEEecCC--CceeecCCceEEEEECCCCcEeEEecCC---
Confidence 322 222222221 1000 024689999999887654321 0111122357999999999999888644
Q ss_pred CCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCE--EEEecCCCcEEEcc
Q 016446 329 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWS 388 (389)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~--LaSgs~D~tIrlW~ 388 (389)
..+.+++|||||+. +++++.|++|++||
T Consensus 314 --------------------------------~~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 314 --------------------------------HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp --------------------------------EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred --------------------------------CceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 37889999999983 57888999999998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.1e-18 Score=167.07 Aligned_cols=283 Identities=6% Similarity=-0.064 Sum_probs=173.4
Q ss_pred EEEecCceEEE--EecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCccee
Q 016446 17 FALAHSGVCAA--FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 94 (389)
Q Consensus 17 a~~~~~gtikl--W~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l 94 (389)
+....+|+.++ ||..+|+++.++.++. . ..++|+|||++|+.++.+.+.-...-.-..+++||..++++.....+
T Consensus 38 ~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~ 114 (368)
T d1mdah_ 38 LPAYFAGTTENWVSCAGCGVTLGHSLGAF-L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp ECTTTCSSEEEEEEETTTTEEEEEEEECT-T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eeccCCCcceEEEEeCCCCcEEEEEeCCC-C--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence 34566777555 5999999999999875 3 35899999999999887654332223337899999999886221111
Q ss_pred Ee---eecccCceeEEEecCCCeEEEEec-CCCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCCeeEEEE
Q 016446 95 FE---SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 170 (389)
Q Consensus 95 ~~---~~~~~~~~~v~Fs~pdG~~Las~s-~D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d~tiklW 170 (389)
-. ......+..++|| |||++|+.+. .++++.+||+++++.+..+.......+.-.+...+++ .+.|+++.+|
T Consensus 115 p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~Dg~~~~~ 190 (368)
T d1mdah_ 115 PDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYL---GSCPASLAAS 190 (368)
T ss_dssp TTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEEC---CCCTTSCEEE
T ss_pred CccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEE---EcCCCCEEEE
Confidence 00 0122345679998 9999988765 5799999999999988877521110000011112211 2333455555
Q ss_pred EcCCCeEEEEEe------ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEE--cccCC----------CceE
Q 016446 171 SIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF----------MTPS 232 (389)
Q Consensus 171 d~~tG~~l~tl~------~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~--l~gh~----------~~v~ 232 (389)
++..+....... .+......+.+. .+..+....++.+.+.++..++.... ...+. ....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (368)
T d1mdah_ 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQAN---YPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCEEET---TTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred EecCCceeeeeeecccccccccceeecccc---cCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence 544433222211 111222333332 22233334455666666655544322 11111 1234
Q ss_pred EEEEcCCCcEEEEEc--C--------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCE--EEEEecCCCccc
Q 016446 233 AFIFLYENQLFLTFR--N--------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKAEPEDQ 299 (389)
Q Consensus 233 sv~fspdg~~laS~s--D--------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~--laS~s~D~~~~~ 299 (389)
.++++|++..+.... + .+|.+||.. |+++.++..... +.+++|||||+. +++++
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~------~~~~a~spDG~~~ly~s~~------- 334 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSA------- 334 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEET-------
T ss_pred eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc------eeEEEECCCCCEEEEEEeC-------
Confidence 578899988776542 2 369999996 999988875432 689999999984 34543
Q ss_pred ccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 300 WMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
.|++|++||..+|+++++++-..
T Consensus 335 ----~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 335 ----GTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ----TTTEEEEEESSSCEEEEECCCCS
T ss_pred ----CCCeEEEEECCCCCEEEEEECCC
Confidence 35899999999999999998543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=8.8e-19 Score=173.20 Aligned_cols=319 Identities=12% Similarity=0.051 Sum_probs=184.8
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCC----cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSP----DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 88 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~----~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~ 88 (389)
++++. ..++.+.+||..+|++...+..+. ...|.++.|||||+.|++++.... -+..-.-..+.|||+.+|++
T Consensus 28 ~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~-~~r~s~~~~~~l~d~~~~~~ 104 (470)
T d2bgra1 28 HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIYDLNKRQL 104 (470)
T ss_dssp SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEEETTTTEE
T ss_pred CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc-eeeeccCceEEEEECCCCcc
Confidence 55554 458899999999999877555432 256999999999999999764321 11222336788999988875
Q ss_pred CCcceeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--------------------CcEEEEE
Q 016446 89 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------------------KHVQEIK 148 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--------------------~~V~~va 148 (389)
. .+- .+-..+..++|| |||+.||.. .|+.+.+|++.+|+..+.... .....+.
T Consensus 105 ~---~l~--~~~~~~~~~~~S-PDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 105 I---TEE--RIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp C---CSS--CCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred c---ccc--cCCccccccccc-cCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 2 121 123345679998 999999996 578999999999986654321 1235578
Q ss_pred Ec-CCceEEEEecCCC---------------------------------CeeEEEEEcCCCeEEEEEeec----------
Q 016446 149 IS-PGIMLLIFNRSSS---------------------------------HVPLKILSIEDGTVLKVFYHL---------- 184 (389)
Q Consensus 149 fS-~g~~la~~~~~s~---------------------------------d~tiklWd~~tG~~l~tl~~~---------- 184 (389)
|| ||++||....+.. +.++.+|++.+++.......+
T Consensus 178 wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (470)
T d2bgra1 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (470)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHT
T ss_pred ECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCC
Confidence 99 6999988754321 124556666655543322211
Q ss_pred -CCceeEEEEEecCCCeEEEE-eCC---CcEEEE--ECCCCeEEEEc-------------ccCCCceEEEEEcCCCcEEE
Q 016446 185 -LHRNKKVDFIEQFNEKLLVK-QEN---ENLQIL--DVRNAELMEVS-------------RTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 185 -~~~~~~v~f~~~~~~~l~~~-s~D---~tIklW--d~~tg~~~~~l-------------~gh~~~v~sv~fspdg~~la 244 (389)
...+..+.|. +++..++.. ... ..++++ |..+|...... ..|......+.+.+++.++.
T Consensus 258 ~~~~~~~~~w~-~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (470)
T d2bgra1 258 GDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (470)
T ss_dssp SCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCceEEEEEEc-CCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence 0112456665 334333332 222 234444 55667665442 12333333333344455555
Q ss_pred EEc-CCeEEEE--eCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEE-EEEecCCCcccccCCCCC----eEEEEeCCCC
Q 016446 245 TFR-NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAG----SINVSSILTG 316 (389)
Q Consensus 245 S~s-D~tIklW--d~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~----tIklWd~~tg 316 (389)
.+. |+...|| +..|...+.|..+... |..+ +++|++.+ ++++.+. ....+ .|++|+-...
T Consensus 337 ~s~~dg~~~ly~~~~~g~~~~~lt~g~~~-----v~~~-~~~d~~~iyf~a~~~~------~~p~~~~ly~v~~~g~~~~ 404 (470)
T d2bgra1 337 ISNEEGYRHICYFQIDKKDCTFITKGTWE-----VIGI-EALTSDYLYYISNEYK------GMPGGRNLYKIQLSDYTKV 404 (470)
T ss_dssp EECTTSCEEEEEEETTCSCCEESCCSSSC-----EEEE-EEECSSEEEEEESCGG------GCTTCBEEEEEETTCTTCE
T ss_pred EeccCcCceeEEEeccCCceeeeccCCee-----EEEE-EEECCCEEEEEEecCC------CCcceEEEEEEECCCCCce
Confidence 565 7765555 5667766666643332 5665 44555554 3333210 00001 1444432233
Q ss_pred eEEE-EecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEE---EecCCCcEEEcc
Q 016446 317 KCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY---TGNRHGLVHVWS 388 (389)
Q Consensus 317 ~~l~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~La---Sgs~D~tIrlW~ 388 (389)
+||. ++.+|. ..+++++|||||++++ ||..+-.++||+
T Consensus 405 ~~lt~~~~~~~----------------------------------~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~ 446 (470)
T d2bgra1 405 TCLSCELNPER----------------------------------CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (470)
T ss_dssp EESSTTTSTTT----------------------------------BCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred eEecccccCCC----------------------------------CCEEEEEECCCCCEEEEEecCCCCCeEEEEE
Confidence 3432 233454 5899999999999977 666666677764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=9.3e-18 Score=165.75 Aligned_cols=295 Identities=9% Similarity=0.067 Sum_probs=172.3
Q ss_pred ccEEEEEee--ccEEEEEec---------CceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcc
Q 016446 4 TKVIEIVAA--RDIVFALAH---------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 72 (389)
Q Consensus 4 ~~v~~i~~~--~~~~a~~~~---------~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~ 72 (389)
..|.++.|+ |++||..+. ++.+.|||+++|+ +..+..+. +.+..+.|||||+.||.++ +
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~-~~~~~~~~SPDG~~ia~~~-----~--- 131 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP-NNTQWVTWSPVGHKLAYVW-----N--- 131 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC-TTEEEEEECSSTTCEEEEE-----T---
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCC-ccccccccccCcceeeEee-----c---
Confidence 457889999 999998753 6788899998766 55688775 8899999999999999842 3
Q ss_pred eeeeeeeEeEeccCCCCCc------ceeEe--------eecccCceeEEEecCCCeEEEEecCCCe-EE-----------
Q 016446 73 LKCRSTKIEYIRRGKPDSG------FALFE--------SESLKWPGFVEFDDVNGKVLTYSAQDSI-YK----------- 126 (389)
Q Consensus 73 l~~~~~~l~~i~~g~~~~~------~~l~~--------~~~~~~~~~v~Fs~pdG~~Las~s~D~t-ik----------- 126 (389)
..+.+|++..|+.... ...+. .+..+....+.|| |||+.||....|.+ |+
T Consensus 132 ---~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d~~~v~~~~~~~~~~~~ 207 (470)
T d2bgra1 132 ---NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES 207 (470)
T ss_dssp ---TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT
T ss_pred ---ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC-CCCCccceeEecCCcCceEEEEeeccCC
Confidence 5678888877765210 00111 0123334558898 99999999876543 33
Q ss_pred ------------------------EEeCCCCeEEEEe-----c--------CCcEEEEEEc-CCceEEEEe-cCCCCeeE
Q 016446 127 ------------------------VFDLKNYTMLYSI-----S--------DKHVQEIKIS-PGIMLLIFN-RSSSHVPL 167 (389)
Q Consensus 127 ------------------------lWdl~~g~~l~tl-----~--------~~~V~~vafS-~g~~la~~~-~~s~d~ti 167 (389)
+|++.+++..... . ...+..+.++ ++..++... .......+
T Consensus 208 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~ 287 (470)
T d2bgra1 208 LQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM 287 (470)
T ss_dssp CSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred CCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEE
Confidence 3343333211000 0 1234567777 555444332 22222344
Q ss_pred EEE--EcCCCeEEEEEe-----e-cCC-----ceeEEEEEecCCCeEE-EEeCCCcEEEE--ECCCCeEEEEcccCCCce
Q 016446 168 KIL--SIEDGTVLKVFY-----H-LLH-----RNKKVDFIEQFNEKLL-VKQENENLQIL--DVRNAELMEVSRTEFMTP 231 (389)
Q Consensus 168 klW--d~~tG~~l~tl~-----~-~~~-----~~~~v~f~~~~~~~l~-~~s~D~tIklW--d~~tg~~~~~l~gh~~~v 231 (389)
+++ |..+|+...... . ..+ .-....|....++.++ .+..|+..+|| +...+++.+. ..+...|
T Consensus 288 ~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~l-t~g~~~v 366 (470)
T d2bgra1 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI-TKGTWEV 366 (470)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEES-CCSSSCE
T ss_pred EEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeee-ccCCeeE
Confidence 444 556676654321 0 001 1122233322233333 45577766665 5655555544 4445567
Q ss_pred EEEEEcCCCcEEEEE-c-CCe---EEEEeC--C-CcEEEE----eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 016446 232 SAFIFLYENQLFLTF-R-NRT---VAVWNF--R-GELVTS----FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 299 (389)
Q Consensus 232 ~sv~fspdg~~laS~-s-D~t---IklWd~--~-G~~l~t----l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~ 299 (389)
..+...+++.+..++ . +.+ -.||.+ . +...+. +.+|... +.+++|||||+|+|-.+.
T Consensus 367 ~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~-----~~s~~fSpdgky~~~~~s------ 435 (470)
T d2bgra1 367 IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQ-----YYSVSFSKEAKYYQLRCS------ 435 (470)
T ss_dssp EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBC-----BEEEEECTTSSEEEEEEC------
T ss_pred EEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCC-----EEEEEECCCCCEEEEEec------
Confidence 776332233333344 3 332 235543 3 233333 3455544 799999999999884432
Q ss_pred ccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 300 WMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 300 ~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
+...-+++||+..+|+++..|..+.
T Consensus 436 --~~~~P~~~l~~~~~g~~v~~le~n~ 460 (470)
T d2bgra1 436 --GPGLPLYTLHSSVNDKGLRVLEDNS 460 (470)
T ss_dssp --SBSSCEEEEEETTTTEEEEEEECCH
T ss_pred --CCCCCeEEEEECCCCCEEEEEeccH
Confidence 2344689999999999999998654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.76 E-value=1e-18 Score=176.05 Aligned_cols=295 Identities=9% Similarity=0.005 Sum_probs=196.6
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeE
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 95 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~ 95 (389)
++++.++|+|++|++.+++.|+++. .||||+.+. . +.++ .+.++.. .+.. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip----------Vfspd~~~g-~----g~~~-es~~vl~-------~~~~----~~~ 66 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP----------VFNVDSATG-W----GITN-ESKEILG-------GDQQ----YLN 66 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC----------SSSBCTTTC-T----TTSH-HHHHHHC-------SSSC----CSC
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE----------eEcCCCCEE-E----EECC-ccceEEe-------cccc----ccc
Confidence 5677889999999999999999885 389998742 2 3344 3333211 1110 011
Q ss_pred eeecccCceeEEEecCCCeEE-EEecCCCeEEEEeCCCCeEEEEec---CCcEEEEEEc-CCceEEEEecCCC-------
Q 016446 96 ESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSS------- 163 (389)
Q Consensus 96 ~~~~~~~~~~v~Fs~pdG~~L-as~s~D~tiklWdl~~g~~l~tl~---~~~V~~vafS-~g~~la~~~~~s~------- 163 (389)
...+-.+.....++ |||++| ++...+.+|.++|+.++++...+. +.....++|+ +|+++.+.+....
T Consensus 67 gd~hhP~~s~t~gt-pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 67 GDCHHPHISMTDGR-YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp CCBCCCEEEEETTE-EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred CcccCCCcceeccc-CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 11122233345666 899988 666789999999999999877553 5789999999 5775433322211
Q ss_pred ---------CeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeC----------------------------
Q 016446 164 ---------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE---------------------------- 206 (389)
Q Consensus 164 ---------d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~---------------------------- 206 (389)
...+..+|.++.+.+.++.-. +....++|+ |++..+.+++.
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~ 223 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA 223 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred ccccccccccceEEeecCccceeeEEEecC-CCccceEEC-CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence 123466999999998888743 556888887 77887777653
Q ss_pred -------------CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEEEEeCCCcEEEEeccCcCCc
Q 016446 207 -------------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFRGELVTSFEDHLLWH 271 (389)
Q Consensus 207 -------------D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIklWd~~G~~l~tl~gh~~~~ 271 (389)
++.+.|++....+.+.++..+. .+..++++|||+++..+ . |+||.+||++- +...++++..+.
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k-~~~~~~~~~~~~ 301 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK-LDDLFEDKIELR 301 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG-HHHHTTTSSCGG
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeeh-hhhHhhccCCcc
Confidence 3566777777767777766654 47889999999987655 5 99999999741 111122222210
Q ss_pred --------CCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC----------CeEEEEecCCCCCCCccc
Q 016446 272 --------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKINATNCSPKVDD 333 (389)
Q Consensus 272 --------~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t----------g~~l~tl~gH~~~~~~~~ 333 (389)
........+|+|+|..+.|.+-| ..|..|++.. -..+.++.-|-
T Consensus 302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~d-----------s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y------- 363 (441)
T d1qnia2 302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFID-----------SQVCKWNIADAIKHYNGDRVNYIRQKLDVQY------- 363 (441)
T ss_dssp GGEEECCBCCSCEEEEEECSSSEEEEEETTT-----------TEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-------
T ss_pred eEEEeecccccCcccceecCCceEEEccccc-----------ceEEEeccchhhhhhccCCCceeEecccccc-------
Confidence 00012456899999998887654 7999999741 12334443221
Q ss_pred ccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEe---cCCC
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---NRHG 382 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSg---s~D~ 382 (389)
-.+|+..+.+.+|+|||++|+|+ |.|+
T Consensus 364 ----------------------~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 364 ----------------------QPGHNHASLTESRDADGKWLVVLSKFSKDR 393 (441)
T ss_dssp ----------------------CEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred ----------------------CCCCCccccccccCCCCcEEEecCcccccc
Confidence 13455678889999999999999 5554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.60 E-value=1.6e-12 Score=120.63 Aligned_cols=233 Identities=11% Similarity=0.224 Sum_probs=173.8
Q ss_pred ccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--------CcEEEEEEc--CCceEEEEecCCCCeeEEE
Q 016446 100 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIS--PGIMLLIFNRSSSHVPLKI 169 (389)
Q Consensus 100 ~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--------~~V~~vafS--~g~~la~~~~~s~d~tikl 169 (389)
+.+|..|+++ |||+++++-...+.|++||. +|+.+..+.. ..-..+++. .+..+++. .+....|+.
T Consensus 22 f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~i~~ 97 (279)
T d1q7fa_ 22 FTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE--RSPTHQIQI 97 (279)
T ss_dssp BSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE--CGGGCEEEE
T ss_pred ECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceec--cCCcccccc
Confidence 4478899998 89999999888899999996 6888877741 134567766 35555544 333468888
Q ss_pred EEcCCCeEEEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEE
Q 016446 170 LSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 170 Wd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~ 246 (389)
++ .+|+...++. .....-..+++. +++..+++....+.+.++|. +|+.+.++ ..+......+++.++|+++++.
T Consensus 98 ~~-~~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 98 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred cc-ccccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence 88 4788888875 223334566665 45555666667788888886 56666664 5677789999999999999998
Q ss_pred c-CCeEEEEeCCCcEEEEecc--CcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEec
Q 016446 247 R-NRTVAVWNFRGELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 323 (389)
Q Consensus 247 s-D~tIklWd~~G~~l~tl~g--h~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~ 323 (389)
. .+.|+++|.+|+.+.++.. +... -..|++.|+|+++++-+. +++.|.+++ .+|+.+.++.
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~-----P~giavD~~G~i~Vad~~----------~~~~v~~f~-~~G~~~~~~~ 238 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH----------NNFNLTIFT-QDGQLISALE 238 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS----------SSCEEEEEC-TTSCEEEEEE
T ss_pred ccccceeeeecCCceeeeecccccccC-----CcccccccCCeEEEEECC----------CCcEEEEEC-CCCCEEEEEe
Confidence 8 9999999999999988842 2221 479999999999987543 236899999 6799998886
Q ss_pred CCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 324 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 324 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
.... ....+.|++.|||+.+++ +.++.|++|+
T Consensus 239 ~~~~--------------------------------~~~p~~vav~~dG~l~V~-~~n~~v~~fr 270 (279)
T d1q7fa_ 239 SKVK--------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYR 270 (279)
T ss_dssp ESSC--------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred CCCC--------------------------------CCCEeEEEEeCCCcEEEE-eCCCeEEEEE
Confidence 5331 035788999999986664 5789999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.53 E-value=3.2e-13 Score=135.46 Aligned_cols=230 Identities=10% Similarity=0.006 Sum_probs=161.1
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecC--------------------------------CcEEEEEEc-CCceEEEEecCC
Q 016446 116 LTYSAQDSIYKVFDLKNYTMLYSISD--------------------------------KHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 116 Las~s~D~tiklWdl~~g~~l~tl~~--------------------------------~~V~~vafS-~g~~la~~~~~s 162 (389)
.+|++++|+|++|++.+++.+.++.- -......++ ||++|.+...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~-- 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK-- 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence 56788999999999999999888630 113344556 6888877754
Q ss_pred CCeeEEEEEcCCCeEEEEEe-ecCCceeEEEEEecCCC--eEEEEeCCC-----------------cEEEEECCCCeEEE
Q 016446 163 SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE--KLLVKQENE-----------------NLQILDVRNAELME 222 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~-~~~~~~~~v~f~~~~~~--~l~~~s~D~-----------------tIklWd~~tg~~~~ 222 (389)
.+.+|.++|+.|+++.+.++ .+......++|+ |++. +.++.+++. .+..+|.++.+...
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC-CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEe-ccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 45799999999999999886 245667889998 6675 444444432 34668999988876
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEc-C-----------------------------------------CeEEEEeCC-Cc
Q 016446 223 VSRTEFMTPSAFIFLYENQLFLTFR-N-----------------------------------------RTVAVWNFR-GE 259 (389)
Q Consensus 223 ~l~gh~~~v~sv~fspdg~~laS~s-D-----------------------------------------~tIklWd~~-G~ 259 (389)
+..-.. .+..++|+|||+++...+ + +.+.|++.. .+
T Consensus 171 qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~ 249 (441)
T d1qnia2 171 QVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE 249 (441)
T ss_dssp EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred EEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence 655443 478899999999888775 3 456677665 56
Q ss_pred EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCC
Q 016446 260 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 339 (389)
Q Consensus 260 ~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~ 339 (389)
+++++.....+ ..+++||||+|++.++. .|+||.+||+.+ +.+.+.++.+......+....
T Consensus 250 v~~~IPvgksP------hGv~vSPDGkyl~~~~~----------~~~tvsv~d~~k--~~~~~~~~~~~~~~~~~~~~~- 310 (441)
T d1qnia2 250 FTRYIPVPKNP------HGLNTSPDGKYFIANGK----------LSPTVSVIAIDK--LDDLFEDKIELRDTIVAEPEL- 310 (441)
T ss_dssp SEEEECCBSSC------CCEEECTTSCEEEEECT----------TSSBEEEEEGGG--HHHHTTTSSCGGGGEEECCBC-
T ss_pred eEEEEeCCCCc------cCceECCCCCEEEEeCC----------cCCcEEEEEeeh--hhhHhhccCCcceEEEeeccc-
Confidence 77788776665 58999999999876543 369999999864 333344433100000000000
Q ss_pred CCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEEEcc
Q 016446 340 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 388 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIrlW~ 388 (389)
. -...-.+|+|+|..+.|..-|.+|..|+
T Consensus 311 -------------------g-lgplh~~fd~~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 311 -------------------G-LGPLHTTFDGRGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp -------------------C-SCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred -------------------c-cCcccceecCCceEEEcccccceEEEec
Confidence 0 1345579999999999999999999997
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.3e-11 Score=109.44 Aligned_cols=247 Identities=9% Similarity=0.067 Sum_probs=149.3
Q ss_pred ccEEEEEecCc-----eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCC
Q 016446 13 RDIVFALAHSG-----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 87 (389)
Q Consensus 13 ~~~~a~~~~~g-----tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~ 87 (389)
.++..+.-+++ .+.|-|.+ |...+.|..+. +.+.+-+|||||+.||.++... .. ..+.+.+...+.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~d-G~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~-~~------~~~~~~~~~~~~ 74 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFES-GR------SALVIQTLANGA 74 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEES-SCEEEEEECTTSSEEEEEECTT-SS------CEEEEEETTTCC
T ss_pred CeEEEEEEeCCCCceEEEEEEcCC-CCCcEEEecCC-CceeeeEECCCCCEEEEEEeec-cC------cceeeeecccCc
Confidence 44444455543 56677775 77777776554 7899999999999999875422 22 334444444443
Q ss_pred CCCcceeEeeecccCceeEEEecCCCeEEEEecC-CCeEEEEeC--CCCeEEEEec-CCcEEEEEEc-CCceEEEEecCC
Q 016446 88 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDL--KNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSS 162 (389)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~-D~tiklWdl--~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s 162 (389)
. . ..+ ..........|| |||+.|+..+. ++...++.. .......... ........++ ++..++..+...
T Consensus 75 ~---~-~~~-~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
T d2hqsa1 75 V---R-QVA-SFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 148 (269)
T ss_dssp E---E-EEE-CCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred e---e-EEe-eeecccccceec-CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceeccccc
Confidence 2 1 111 234445668998 99999887654 323333332 2222322222 2344455666 555554444444
Q ss_pred CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCCcE--EEEECCCCeEEEEcccCCCceEEEEEcCC
Q 016446 163 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENL--QILDVRNAELMEVSRTEFMTPSAFIFLYE 239 (389)
Q Consensus 163 ~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~tI--klWd~~tg~~~~~l~gh~~~v~sv~fspd 239 (389)
....|.+.++.++.... +..+........++ |++..++..+ ..+.. .+.|..++.+..+ .+........||||
T Consensus 149 g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~p~~SPD 224 (269)
T d2hqsa1 149 GRPQVYKVNINGGAPQR-ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--SSTFLDETPSLAPN 224 (269)
T ss_dssp SSCEEEEEETTSSCCEE-CCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCEEEC--CCSSSCEEEEECTT
T ss_pred CCceEeeeeccccccee-eecccccccccccc-cccceeEEEeecCCceeeeEeecccccceEe--ecCccccceEECCC
Confidence 44567778877765443 33344555666776 7788888765 44444 4446655555333 34556678899999
Q ss_pred CcEEEEEc----CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECC
Q 016446 240 NQLFLTFR----NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 283 (389)
Q Consensus 240 g~~laS~s----D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSp 283 (389)
|+.||-.+ ...|.+++++|...+.|...... +...+|||
T Consensus 225 G~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~-----~~~p~WSP 267 (269)
T d2hqsa1 225 GTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ-----VKFPAWSP 267 (269)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSE-----EEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCc-----EEeEEeCC
Confidence 99988554 34788999997766677765433 67888998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.8e-10 Score=102.20 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=138.7
Q ss_pred eeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCC---eEEEEeCCCCeEE-EEecCCcEEEEEEc-
Q 016446 76 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTML-YSISDKHVQEIKIS- 150 (389)
Q Consensus 76 ~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~---tiklWdl~~g~~l-~tl~~~~V~~vafS- 150 (389)
.++.|-|+ .|.- .+.+. +....+.+-+|| |||+.||..+.+. .+.+-+..++... .+..........+|
T Consensus 19 ~~l~i~d~-dG~~--~~~l~--~~~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 92 (269)
T d2hqsa1 19 YELRVSDY-DGYN--QFVVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92 (269)
T ss_dssp EEEEEEET-TSCS--CEEEE--EESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred EEEEEEcC-CCCC--cEEEe--cCCCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC
Confidence 45666663 4442 23343 334455678998 9999999775433 4556666666643 33346788899999
Q ss_pred CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCeEEEEcccC
Q 016446 151 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTE 227 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s-~D~--tIklWd~~tg~~~~~l~gh 227 (389)
+|..++..........+..+.....+....... ........++ ++++.++..+ .++ .|.+.++.++...+ +..+
T Consensus 93 dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~ 169 (269)
T d2hqsa1 93 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWE 169 (269)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCS
T ss_pred CCCeeeEeeecCCccceeecccccccceeeeec-cccccccccc-cccccceecccccCCceEeeeeccccccee-eecc
Confidence 688887765544334444444444444443332 2233333444 5566565544 454 45566776665444 3456
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCeEEEEe--CCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCC
Q 016446 228 FMTPSAFIFLYENQLFLTFR--NRTVAVWN--FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 303 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~s--D~tIklWd--~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s 303 (389)
........++|||+.++..+ .+...+|. ..+...+.+. +... +....|||||++||-.+.. +
T Consensus 170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-----~~~p~~SPDG~~i~f~s~~--------~ 235 (269)
T d2hqsa1 170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STFL-----DETPSLAPNGTMVIYSSSQ--------G 235 (269)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSSS-----CEEEEECTTSSEEEEEEEE--------T
T ss_pred cccccccccccccceeEEEeecCCceeeeEeecccccceEee-cCcc-----ccceEECCCCCEEEEEEcC--------C
Confidence 66777889999999999886 45555554 4444444443 3333 4788999999999876643 2
Q ss_pred CCCeEEEEeCCCCeEEEEecCCC
Q 016446 304 SAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 304 ~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
....|.++++..++ ...|....
T Consensus 236 ~~~~l~~~~~dg~~-~~~lt~~~ 257 (269)
T d2hqsa1 236 MGSVLNLVSTDGRF-KARLPATD 257 (269)
T ss_dssp TEEEEEEEETTSCC-EEECCCSS
T ss_pred CCcEEEEEECCCCC-EEEEeCCC
Confidence 34679999987554 45666554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.35 E-value=1e-09 Score=101.19 Aligned_cols=234 Identities=12% Similarity=0.221 Sum_probs=162.1
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEee-----ecccCceeEEEecCCCeEEE-Eec
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-----ESLKWPGFVEFDDVNGKVLT-YSA 120 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~-----~~~~~~~~v~Fs~pdG~~La-s~s 120 (389)
=+.|+++|+|+.+++ + ..+ +.|++++ +.|++. ..|.. .....|..+++.+..+..++ ..+
T Consensus 25 P~gvavd~dg~i~Va---D-~~n------~rI~v~d-~~G~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 90 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVA---D-TNN------HRIQIFD-KEGRFK---FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 90 (279)
T ss_dssp EEEEEECTTCCEEEE---E-GGG------TEEEEEC-TTSCEE---EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred ccEEEEcCCCCEEEE---E-CCC------CEEEEEe-CCCCEE---EEecccCCCcccccccccccccccccccceeccC
Confidence 378999999996554 2 234 5677777 567651 11211 12234566887633455544 455
Q ss_pred CCCeEEEEeCCCCeEEEEecC---CcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEEEEe--ecCCceeEEEEE
Q 016446 121 QDSIYKVFDLKNYTMLYSISD---KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFI 194 (389)
Q Consensus 121 ~D~tiklWdl~~g~~l~tl~~---~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~tl~--~~~~~~~~v~f~ 194 (389)
.++.|++++. +|+...++.. .....+++.+ |..+++. . ..+.+.+.+ .+|+.+.++. .+......+++.
T Consensus 91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~-~--~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d 165 (279)
T d1q7fa_ 91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVE-C--KVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVN 165 (279)
T ss_dssp GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEE-T--TTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEEC
T ss_pred Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEe-e--ccceeeEec-cCCceeecccccccccccceeeec
Confidence 6778888885 7888777752 5678999994 6555443 2 235777888 5789998874 233445667765
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCCCcEEEEeccCcCC
Q 016446 195 EQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLW 270 (389)
Q Consensus 195 ~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~G~~l~tl~gh~~~ 270 (389)
+++..+++....+.|+++|. +|+.+.++ .++...+..|++.|+|+++++-+ ++.|.+++.+|+++.++......
T Consensus 166 -~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~ 243 (279)
T d1q7fa_ 166 -DKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKH 243 (279)
T ss_dssp -SSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCC
T ss_pred -cceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCC
Confidence 44445555568899999997 67777766 45777899999999999998875 56899999999999998654322
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 271 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 271 ~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
..-..|++.|||+++++ +. ++.|++|..++.
T Consensus 244 ---~~p~~vav~~dG~l~V~-~~-----------n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 244 ---AQCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 274 (279)
T ss_dssp ---SCEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred ---CCEeEEEEeCCCcEEEE-eC-----------CCeEEEEEeeee
Confidence 12489999999987775 33 379999987654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.29 E-value=3e-09 Score=102.31 Aligned_cols=273 Identities=10% Similarity=0.035 Sum_probs=153.4
Q ss_pred EEEEec--CceEEE--Eeccccee--eeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEe-ccCCC
Q 016446 16 VFALAH--SGVCAA--FSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKP 88 (389)
Q Consensus 16 ~a~~~~--~gtikl--W~~~tg~~--l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i-~~g~~ 88 (389)
|+++.+ ++.|.. +|.++|++ +....-...+.+.-++|+|||++|..+. .+ .+..+.+ ..+..
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~----~~-------~~~~~~i~~~~~~ 73 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTEI 73 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTEE
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe----CC-------cEEEEEEeCCCCe
Confidence 344433 444543 55555653 2222222224455699999999987753 11 1222333 22322
Q ss_pred CCcceeEeeecccCceeEEEecCCCe--EEEEec-CCCeEEEEeCC-CCeE--EEEe---------------c-CCcEEE
Q 016446 89 DSGFALFESESLKWPGFVEFDDVNGK--VLTYSA-QDSIYKVFDLK-NYTM--LYSI---------------S-DKHVQE 146 (389)
Q Consensus 89 ~~~~~l~~~~~~~~~~~v~Fs~pdG~--~Las~s-~D~tiklWdl~-~g~~--l~tl---------------~-~~~V~~ 146 (389)
..+-.....+.|..++|+ |||+ +|+++. ..++|..+.+. .+.. +..+ + +..+.+
T Consensus 74 ---~~~~~~~~~~~p~~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~ 149 (365)
T d1jofa_ 74 ---VHEASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp ---EEEEEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred ---EEEeeecCCCCcEEEEEC-CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceE
Confidence 111112233456778997 8998 455443 24555544432 1111 1111 1 235889
Q ss_pred EEEc-CCceEEEEecCCCCeeEEEEEcC-CCeEEEE--Ee--ecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCe
Q 016446 147 IKIS-PGIMLLIFNRSSSHVPLKILSIE-DGTVLKV--FY--HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE 219 (389)
Q Consensus 147 vafS-~g~~la~~~~~s~d~tiklWd~~-tG~~l~t--l~--~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~ 219 (389)
++|+ +|+++++.+.. ...|.+++.. +|+.... +. .....-+.++|+ |++.++.+. ..+++|.+|++..+.
T Consensus 150 v~~sPdG~~l~v~d~g--~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 150 MVFDPTETYLYSADLT--ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEECTTSSEEEEEETT--TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEECCCCCEEEEeeCC--CCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCC
Confidence 9999 58888777533 2467777654 4444322 21 223455889998 777777665 488999999997654
Q ss_pred E--EEE---c--------------ccCCCceEEEEEcCCCcEEEEEc--CCe-----EEEEeCC--CcEEEEeccCcCCc
Q 016446 220 L--MEV---S--------------RTEFMTPSAFIFLYENQLFLTFR--NRT-----VAVWNFR--GELVTSFEDHLLWH 271 (389)
Q Consensus 220 ~--~~~---l--------------~gh~~~v~sv~fspdg~~laS~s--D~t-----IklWd~~--G~~l~tl~gh~~~~ 271 (389)
. +.. + ..+......++++|||++|.++. +.+ |-.+++. |.+.+.+.-+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 306 (365)
T d1jofa_ 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence 2 221 1 12333567899999999987763 444 7777763 55433222111000
Q ss_pred CCCCeeEEEECC-CCCEEEEEecCCCcccccCCCCCeEEEEeCCCC
Q 016446 272 PDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 272 ~~~~v~sv~fSp-dG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
....-+.++|+| ||++|+.+..+ +++|.+|++...
T Consensus 307 ~G~~p~~i~~~p~~G~~l~va~~~----------s~~v~v~~~~~~ 342 (365)
T d1jofa_ 307 SGGHSNAVSPCPWSDEWMAITDDQ----------EGWLEIYRWKDE 342 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSS----------SCEEEEEEEETT
T ss_pred CCCCccEEEecCCCCCEEEEEeCC----------CCeEEEEEEeCC
Confidence 000136899999 89999887654 599999986543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.27 E-value=2.1e-09 Score=100.05 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=151.0
Q ss_pred ccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEec
Q 016446 31 ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD 110 (389)
Q Consensus 31 ~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~ 110 (389)
...|.+.++... .++..||++|||..+++ ...+ ++|.-++ +.|+. ..++ ...+.+..++|+
T Consensus 16 ~~~~v~~~~p~~--~~~e~iAv~pdG~l~vt----~~~~------~~I~~i~-p~g~~---~~~~--~~~~~~~gla~~- 76 (302)
T d2p4oa1 16 APAKIITSFPVN--TFLENLASAPDGTIFVT----NHEV------GEIVSIT-PDGNQ---QIHA--TVEGKVSGLAFT- 76 (302)
T ss_dssp CCEEEEEEECTT--CCEEEEEECTTSCEEEE----ETTT------TEEEEEC-TTCCE---EEEE--ECSSEEEEEEEC-
T ss_pred CcccEEEECCCC--CCcCCEEECCCCCEEEE----eCCC------CEEEEEe-CCCCE---EEEE--cCCCCcceEEEc-
Confidence 345667777654 47899999999998877 3344 4444444 55653 2233 344567789998
Q ss_pred CCCeEEEEecCCCeEEEEeCCCC--eE--EEEec-CCcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNY--TM--LYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL- 184 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g--~~--l~tl~-~~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~- 184 (389)
|||+++++...++.+.+|++... .. +.... ......+++.++..+..+ ++.+..+..+|..++.....+...
T Consensus 77 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~--~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 77 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTA--DSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEE--ETTTTEEEEEETTTTEEEEEEECGG
T ss_pred CCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEee--ccccccceeeeccCCcceeEecCCc
Confidence 89999999888888888887543 22 22333 467899999954444444 344578888888887655443311
Q ss_pred -------CC--ceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEE---EEcccCCCceEEEEEcCCCcEEEEEc-CCe
Q 016446 185 -------LH--RNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELM---EVSRTEFMTPSAFIFLYENQLFLTFR-NRT 250 (389)
Q Consensus 185 -------~~--~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~---~~l~gh~~~v~sv~fspdg~~laS~s-D~t 250 (389)
.. ....+.+ +++.+..+ +..+.|..++....... ..+. +...+..++|.+||++.++.. +++
T Consensus 155 ~~~~~~~~~~~~~ngi~~---~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~ 230 (302)
T d2p4oa1 155 LARSNSESVFPAANGLKR---FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS 230 (302)
T ss_dssp GSCSSTTCCSCSEEEEEE---ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC
T ss_pred cceeeccCcccccccccc---cCCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCc
Confidence 11 1233333 35555554 58888888887654321 1111 233467799999999998887 999
Q ss_pred EEEEeCCCcEEEEeccCcCCcCCCCeeEEEE---CCCCCEEEEEe
Q 016446 251 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYI---TSDQDLIISYC 292 (389)
Q Consensus 251 IklWd~~G~~l~tl~gh~~~~~~~~v~sv~f---SpdG~~laS~s 292 (389)
|..++.+|+.....+..... ....+++| +||+++|..++
T Consensus 231 V~~i~p~G~~~~~~~~~~~~---~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 231 VVRIAPDRSTTIIAQAEQGV---IGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EEEECTTCCEEEEECGGGTC---TTEEEEEECCSTTTTTEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCC---CCceEEEEcCCCCCCCEEEEEC
Confidence 99999998864443322211 11589999 88999886543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.26 E-value=6.6e-09 Score=96.61 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=141.7
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEE-EEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCC--CeE
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED--GTV 177 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l-~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~t--G~~ 177 (389)
++..+||+ |||+++++...+++|..|+. +|+.. ..-....+.+++|+ +|.++++...+ ..+.+|+..+ |+.
T Consensus 29 ~~e~iAv~-pdG~l~vt~~~~~~I~~i~p-~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~---~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 29 FLENLASA-PDGTIFVTNHEVGEIVSITP-DGNQQIHATVEGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKSDGTV 103 (302)
T ss_dssp CEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEEECSSEEEEEEECTTSCEEEEEECT---TSCEEEEEECTTSCE
T ss_pred CcCCEEEC-CCCCEEEEeCCCCEEEEEeC-CCCEEEEEcCCCCcceEEEcCCCCeEEEecCC---ceEEEEEecccccce
Confidence 56789998 99999999999999999996 45533 22235789999999 67766655333 4566665443 333
Q ss_pred EEEEe-ecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcc----------cCCCceEEEEEcCCCcEEEEE
Q 016446 178 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----------TEFMTPSAFIFLYENQLFLTF 246 (389)
Q Consensus 178 l~tl~-~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~----------gh~~~v~sv~fspdg~~laS~ 246 (389)
..... ......+.+++. +++..+++-+.++.|..+|..++.....+. +....+..+++.++ .++.+.
T Consensus 104 ~~~~~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~ 181 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSN 181 (302)
T ss_dssp EEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEE
T ss_pred eeccccCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeec
Confidence 22221 122345677775 455444455688999999998876433221 22234566666543 444555
Q ss_pred c-CCeEEEEeCC--CcE--EEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEE
Q 016446 247 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 321 (389)
Q Consensus 247 s-D~tIklWd~~--G~~--l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~t 321 (389)
+ .+.|..++.. +.. ...+..... ...++|.+||++.++... +++|..++. .|+....
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~------pdgia~d~dG~l~va~~~-----------~~~V~~i~p-~G~~~~~ 243 (302)
T d2p4oa1 182 TEKMLLLRIPVDSTDKPGEPEIFVEQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTII 243 (302)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEE
T ss_pred CCCCeEEeccccccccccccccccCCCC------CcceEECCCCCEEEEEcC-----------CCcEEEECC-CCCEEEE
Confidence 5 8888888875 221 122222222 358999999998887544 478999984 4665444
Q ss_pred ecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEE---CCCCCEEEEecCC
Q 016446 322 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY---DEERNEIYTGNRH 381 (389)
Q Consensus 322 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svaf---Spdg~~LaSgs~D 381 (389)
...... +...++|+| +||+++|+-++..
T Consensus 244 ~~~~~~--------------------------------~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 244 AQAEQG--------------------------------VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECGGGT--------------------------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EecCCC--------------------------------CCCceEEEEcCCCCCCCEEEEECCC
Confidence 332221 147899999 8899999866543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=6.7e-10 Score=106.96 Aligned_cols=248 Identities=10% Similarity=0.075 Sum_probs=138.1
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCC-CCeEEEEe--c-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEc------
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI--S-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSI------ 172 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~-~g~~l~tl--~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~------ 172 (389)
..++|+ |||++|..+. .+.+..|.+. ++..+... . +.....++++ +++.+.........++|..+.+
T Consensus 43 s~la~s-~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~ 120 (365)
T d1jofa_ 43 SWMTFD-HERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp SEEEEC-TTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CEEEEc-CCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc
Confidence 469998 8999887665 4567788765 34433221 1 3345567777 4543222111111233333222
Q ss_pred ------C-CCeEEEEE----eecCCceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCeEEEE----cccCCCceEEEE
Q 016446 173 ------E-DGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEV----SRTEFMTPSAFI 235 (389)
Q Consensus 173 ------~-tG~~l~tl----~~~~~~~~~v~f~~~~~~~l~~~s-~D~tIklWd~~-tg~~~~~----l~gh~~~v~sv~ 235 (389)
. +++.-... .....+...++|+ |++.++++.. ....|.+|+.. +|..... .......++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s-PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~ 199 (365)
T d1jofa_ 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred ceeEeeeecceecCcccCcccCCCCcceEEEEC-CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEE
Confidence 1 12211111 1123456789998 7888888875 45678888764 3443221 123456789999
Q ss_pred EcCCCcEEEEE-c-CCeEEEEeCC-Cc--EEEEeccCcCC------------cCCCCeeEEEECCCCCEEEEEecCCCcc
Q 016446 236 FLYENQLFLTF-R-NRTVAVWNFR-GE--LVTSFEDHLLW------------HPDCNTNNIYITSDQDLIISYCKAEPED 298 (389)
Q Consensus 236 fspdg~~laS~-s-D~tIklWd~~-G~--~l~tl~gh~~~------------~~~~~v~sv~fSpdG~~laS~s~D~~~~ 298 (389)
|+|||+++-.. . +++|.+|+++ ++ .+.+....... ........++|||||++|.++.+.+.
T Consensus 200 f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~-- 277 (365)
T d1jofa_ 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK-- 277 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS--
T ss_pred ECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC--
Confidence 99999988555 4 9999999986 33 22222111000 00001357899999999988754210
Q ss_pred cccCCCCCeEEEEeCCC-CeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECC-CCCEEE
Q 016446 299 QWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIY 376 (389)
Q Consensus 299 ~~~~s~D~tIklWd~~t-g~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSp-dg~~La 376 (389)
......|-.|++.. |.....+.-+.. +. .| ..-+.++|+| +|++|+
T Consensus 278 ---~~~~~~i~~~~~~~~g~~~~~~~~~~~--------~~--~G-------------------~~p~~i~~~p~~G~~l~ 325 (365)
T d1jofa_ 278 ---FELQGYIAGFKLRDCGSIEKQLFLSPT--------PT--SG-------------------GHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp ---TTSCCEEEEEEECTTSCEEEEEEEEEC--------SS--CC-------------------TTCCCEEECTTCTTEEE
T ss_pred ---CccceEEEEEEecCCCceeeEeEeeEE--------Ec--CC-------------------CCccEEEecCCCCCEEE
Confidence 11224466676643 333222111110 00 00 2456799999 899776
Q ss_pred Ee-cCCCcEEEcc
Q 016446 377 TG-NRHGLVHVWS 388 (389)
Q Consensus 377 Sg-s~D~tIrlW~ 388 (389)
.+ ..+++|.+|+
T Consensus 326 va~~~s~~v~v~~ 338 (365)
T d1jofa_ 326 ITDDQEGWLEIYR 338 (365)
T ss_dssp EECSSSCEEEEEE
T ss_pred EEeCCCCeEEEEE
Confidence 55 5779999996
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=1.9e-09 Score=98.35 Aligned_cols=232 Identities=9% Similarity=0.029 Sum_probs=150.9
Q ss_pred cccCceeEEEecCCCeEEE-EecCCCeEEEEeCCCCe-EEEEecC-CcEEEEEEcCCceEEEEecCCCCeeEEEEEcCCC
Q 016446 99 SLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYT-MLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 175 (389)
Q Consensus 99 ~~~~~~~v~Fs~pdG~~La-s~s~D~tiklWdl~~g~-~l~tl~~-~~V~~vafS~g~~la~~~~~s~d~tiklWd~~tG 175 (389)
....|..|+++ +||.+.+ ..+..+.+..++..... ......+ ..-..|++++.+.|..+. ...+.+++++-.++
T Consensus 12 ~~~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d--~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 12 FRLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTD--FNNRVVTLAAGSNN 88 (260)
T ss_dssp SCCCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEE--TTTEEEEECTTCSC
T ss_pred CcCCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEee--eeeceeeeeeeccc
Confidence 34467899998 8999655 45566777777653222 2222222 456789999533444553 33478888876666
Q ss_pred eEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 176 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 176 ~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
+.+..+.+ ......|++. +++..+++-..+..+...+................+..+++.|+|+++++.. ++.|..+
T Consensus 89 ~~~~~~~~-~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 89 QTVLPFDG-LNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp CEECCCCS-CCSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred eeeeeeee-eeeccccccc-ccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence 66544432 2445778775 4555555455677788888766554443334455678999999999998887 8899999
Q ss_pred eCCCcEEEEec-cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCccc
Q 016446 255 NFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 333 (389)
Q Consensus 255 d~~G~~l~tl~-gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~ 333 (389)
|.++..+.++. ..... -..|+|.|+|+++++... .+.|..++.. ++....+..-.
T Consensus 167 d~~~~~~~~~~~~~~~~-----p~gi~~d~~g~l~vsd~~-----------~~~i~~~~~~-~~~~~~~~~~~------- 222 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAG-STTSTVLPFTG------- 222 (260)
T ss_dssp CTTTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TTEEEEECTT-CSCCEECCCCS-------
T ss_pred ccccceeeeeeccccCC-----CccceeeeeeeeeeeecC-----------CCEEEEEeCC-CCeEEEEccCC-------
Confidence 99876655554 22222 478999999999888643 3677777744 33333332111
Q ss_pred ccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCCCcEE
Q 016446 334 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 385 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D~tIr 385 (389)
+....+|+|++||.++++-..++.|+
T Consensus 223 --------------------------~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 223 --------------------------LNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp --------------------------CCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred --------------------------CCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 13678999999999999877777775
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=2.2e-09 Score=97.96 Aligned_cols=236 Identities=11% Similarity=0.088 Sum_probs=151.3
Q ss_pred ceeeeeeecCCcceE--EEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEec
Q 016446 33 NRRICFLNVSPDEVI--RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD 110 (389)
Q Consensus 33 g~~l~tl~~~~~~~v--~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~ 110 (389)
||.+..+.+.. ..+ .+|++.+||+..++. .... .. +..+..++. ....+.......|..|+|+
T Consensus 1 ~~~~~~~~~~~-~~~~P~~vavd~dG~i~v~~---~~~~------~~--i~~~~~~~~--~~~~~~~~~~~~p~gvav~- 65 (260)
T d1rwia_ 1 GQTVLPFTGID-FRLSPSGVAVDSAGNVYVTS---EGMY------GR--VVKLATGST--GTTVLPFNGLYQPQGLAVD- 65 (260)
T ss_dssp CEEECCCCSCC-SCCCEEEEEECTTCCEEEEE---CSSS------CE--EEEEC------CEEECCCCSCCSCCCEEEC-
T ss_pred CCeEEecccCC-CcCCCCEEEEcCCCCEEEEE---cCCC------CE--EEEEcCCCc--eEEEeccCCccCceEEEEc-
Confidence 44444455432 222 799999999966542 1122 12 222233322 1222223344567889998
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEe-ecCCc
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHR 187 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~-~~~~~ 187 (389)
++|.+.++....+.+++++-.++..+.... .....+|++. +|.+. .+... ...+...+..+ ..+..+. .-...
T Consensus 66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~-v~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (260)
T d1rwia_ 66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVY-VADRG--NNRVVKLAAGS-KTQTVLPFTGLND 141 (260)
T ss_dssp TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEE-EEEGG--GTEEEEECTTC-SSCEECCCCSCCS
T ss_pred CCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeE-eeccc--ccccccccccc-ceeeeeeecccCC
Confidence 899999999999999988866666554444 3578999998 46554 44333 24566666544 3333322 11234
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEEEEecc
Q 016446 188 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 266 (389)
Q Consensus 188 ~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l~tl~g 266 (389)
...+++. +++..+++...++.|..+|................+..+++.|+|+++++.. .+.|..++..+.....+..
T Consensus 142 p~~i~~~-~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~ 220 (260)
T d1rwia_ 142 PDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF 220 (260)
T ss_dssp CCEEEEC-TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC
T ss_pred cceeeec-CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEcc
Confidence 4678876 5666656667888999999876666555557778899999999999999998 8888888887665544432
Q ss_pred CcCCcCCCCeeEEEECCCCCEEEEEe
Q 016446 267 HLLWHPDCNTNNIYITSDQDLIISYC 292 (389)
Q Consensus 267 h~~~~~~~~v~sv~fSpdG~~laS~s 292 (389)
-... .-..|+|++||.++++-.
T Consensus 221 ~~~~----~P~~i~~d~~g~l~vad~ 242 (260)
T d1rwia_ 221 TGLN----TPLAVAVDSDRTVYVADR 242 (260)
T ss_dssp CSCC----CEEEEEECTTCCEEEEEG
T ss_pred CCCC----CeEEEEEeCCCCEEEEEC
Confidence 2211 147999999999988744
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.8e-08 Score=100.34 Aligned_cols=262 Identities=12% Similarity=0.049 Sum_probs=148.0
Q ss_pred EecCceEEEEecccceeeeeeecCC--cceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe
Q 016446 19 LAHSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 96 (389)
Q Consensus 19 ~~~~gtiklW~~~tg~~l~tl~~~~--~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~ 96 (389)
...+|.+.+||..+|+.-.-+.... .-.+.+..|||||+.|+.+... ..-+.+=.-....++|+.+|+. ..|..
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~-~~~~r~s~~~~~~i~d~~~~~~---~~l~~ 108 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV-EPIYQHSYTGYYVLSKIPHGDP---QSLDP 108 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC-CCCSSSCCCSEEEEEESSSCCC---EECCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcc-cceeEeeccccEEEEEccCCce---eeccC
Confidence 4567899999999887533333322 1246677899999998774321 1111111113566788888875 22211
Q ss_pred e-ecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-C--CcE-----------------EEEEEc-CCce
Q 016446 97 S-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D--KHV-----------------QEIKIS-PGIM 154 (389)
Q Consensus 97 ~-~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~--~~V-----------------~~vafS-~g~~ 154 (389)
. ..-+.+....|| |||+.||... ++.+.+.+..+++.++... + +.| .++.|| ||++
T Consensus 109 ~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ 186 (465)
T d1xfda1 109 PEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR 186 (465)
T ss_dssp TTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred ccCCccccceeeec-cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCe
Confidence 0 111122347898 9999999876 6778888887777544332 1 122 467799 6999
Q ss_pred EEEEecCCCC-------------------------------eeEEEEEcCCCeEEEEE-ee-----cCCceeEEEEEecC
Q 016446 155 LLIFNRSSSH-------------------------------VPLKILSIEDGTVLKVF-YH-----LLHRNKKVDFIEQF 197 (389)
Q Consensus 155 la~~~~~s~d-------------------------------~tiklWd~~tG~~l~tl-~~-----~~~~~~~v~f~~~~ 197 (389)
||....+... ..+.+.|++++...... .. ...-+..+.|+ ++
T Consensus 187 iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~d 265 (465)
T d1xfda1 187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TS 265 (465)
T ss_dssp EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SS
T ss_pred EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-CC
Confidence 9876433210 13456677665432221 10 01113556675 44
Q ss_pred CCeEEEE--eCC---CcEEEEECCCCeEEEEcccC-CCce----EEEEEcCCCcEEE--EEc--CCeEEEE---------
Q 016446 198 NEKLLVK--QEN---ENLQILDVRNAELMEVSRTE-FMTP----SAFIFLYENQLFL--TFR--NRTVAVW--------- 254 (389)
Q Consensus 198 ~~~l~~~--s~D---~tIklWd~~tg~~~~~l~gh-~~~v----~sv~fspdg~~la--S~s--D~tIklW--------- 254 (389)
+.+++. ..+ ..|.++|..+|++...+..+ ..+| ....|+|||+.++ ..+ +|.=.++
T Consensus 266 -~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~ 344 (465)
T d1xfda1 266 -TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (465)
T ss_dssp -SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred -CeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence 445543 222 46888999999997765433 2233 3457999998532 222 3322222
Q ss_pred eCCCcEEEEeccCcCCcCCCCeeEE-EECCCCCEEE-EEec
Q 016446 255 NFRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLII-SYCK 293 (389)
Q Consensus 255 d~~G~~l~tl~gh~~~~~~~~v~sv-~fSpdG~~la-S~s~ 293 (389)
+..|+.++.|+ +..|. |..+ +|+++++.|. ++..
T Consensus 345 ~~~~~~~~~LT-~G~w~----V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 345 NSSNDNIQSIT-SGDWD----VTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp CSSSCCCCBSC-CSSSC----EEEEEEEETTTTEEEEEESS
T ss_pred cCCCceeEEec-cCCce----EEEEEEEcCCCCEEEEEEeC
Confidence 12344455555 34453 6664 6899887764 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.00 E-value=1.9e-07 Score=82.88 Aligned_cols=245 Identities=9% Similarity=0.004 Sum_probs=129.4
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcc
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 92 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~ 92 (389)
|+.||-.+. |-+-+.++.+|+ .+.|..+. ..+...+|||||+.||.+....+.+ ...++.+.++..|+..+..
T Consensus 12 G~~v~f~~~-~dl~~~d~~~g~-~~~Lt~~~-~~~~~p~~SPDG~~iaf~~~~~~~~----~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 12 GDRIIFVCC-DDLWEHDLKSGS-TRKIVSNL-GVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp TTEEEEEET-TEEEEEETTTCC-EEEEECSS-SEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTTEEEECC
T ss_pred CCEEEEEeC-CcEEEEECCCCC-EEEEecCC-CcccCEEECCCCCEEEEEEeeCCCC----CceEEEEEEecCCceEEee
Confidence 777776654 446666887555 55677765 7889999999999999876544333 2234555666666541000
Q ss_pred --eeEeeecccCceeEEEecCCCeEEEEecC------CCeEEEEeCCCCeEEEEecCCcEEEEEEcCCceEEEEecCCCC
Q 016446 93 --ALFESESLKWPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH 164 (389)
Q Consensus 93 --~l~~~~~~~~~~~v~Fs~pdG~~Las~s~------D~tiklWdl~~g~~l~tl~~~~V~~vafS~g~~la~~~~~s~d 164 (389)
.-............+|+ |||+.|+.... ...+.+.+...++.. .........+.++++...+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred ecCCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeE-EecCCccceeeecCCCeEEEeeccccc
Confidence 00000112234568898 99999997543 223455555444432 222222223334454444332111100
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
...... ..+....+.....+....... +........++++..+..
T Consensus 163 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (281)
T d1k32a2 163 HWKGYR----------------------------------GGTRGKIWIEVNSGAFKKIVD-MSTHVSSPVIVGHRIYFI 207 (281)
T ss_dssp TSTTCC----------------------------------STTCCEEEEEEETTEEEEEEC-CSSCCEEEEEETTEEEEE
T ss_pred eeeeec----------------------------------cCCcceeeeeccccceeeccC-Cccccceeeeecccccee
Confidence 000000 001111222222333332222 233445556667655444
Q ss_pred EEcC--CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 245 TFRN--RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 245 S~sD--~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
+..+ ..|-+.|++|+.++.|..+... ....|||||+.||-.. ++.|.+.|+.+|+..
T Consensus 208 ~~~~~~~~l~~~d~~g~~~~~lt~~~~~------~~~~~SpDG~~I~f~~------------~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 208 TDIDGFGQIYSTDLDGKDLRKHTSFTDY------YPRHLNTDGRRILFSK------------GGSIYIFNPDTEKIE 266 (281)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCCCCSS------CEEEEEESSSCEEEEE------------TTEEEEECTTTCCEE
T ss_pred cccccccceEEEeCCCCceEEeecCCCc------ccccCcCCCCEEEEEe------------CCEEEEEECCCCCEE
Confidence 4433 3566667886666666655432 3346999999998643 378999999888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.99 E-value=2.3e-07 Score=87.16 Aligned_cols=228 Identities=10% Similarity=0.076 Sum_probs=144.1
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEc-CCceEEEEecCCCC--eeEEEEEcCCCeEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSH--VPLKILSIEDGTVL 178 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS-~g~~la~~~~~s~d--~tiklWd~~tG~~l 178 (389)
..++|+ ++|++..+....+.|.-|+..+++....+. ......++|+ +|.++++. ..... ..|...+..+++..
T Consensus 43 EG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~-~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 43 EGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY-LGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp EEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEE-CTTSSSCCEEEEECTTSCSCE
T ss_pred EeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEe-cCCCccceeEEEEcCCCceee
Confidence 468998 899998888899999999987766554443 4578899999 56666543 23222 23444555555544
Q ss_pred EEEeec--CCceeEEEEEecCCCeEEEEeC------CCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE-EEEc-C
Q 016446 179 KVFYHL--LHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-N 248 (389)
Q Consensus 179 ~tl~~~--~~~~~~v~f~~~~~~~l~~~s~------D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l-aS~s-D 248 (389)
...... ......+++. ++|...++... -+.+..++...+.... +...-...+.++|+||++.| ++-+ .
T Consensus 121 ~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~-~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeccCCCcccCCcceeEE-eccceeecccccccccCcceeEEEecccceeEE-EeeccceeeeeeeccccceEEEecccC
Confidence 443321 1224567775 55554444221 1335555554444333 33334467889999999855 5556 8
Q ss_pred CeEEEEeCC--CcEEEEec--------cCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 249 RTVAVWNFR--GELVTSFE--------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 249 ~tIklWd~~--G~~l~tl~--------gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
+.|..++++ |....... ++..+ -.+++.++|++.++... .+.|..+| .+|+.
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P------dGl~vD~~G~l~Va~~~-----------~g~V~~~~-p~G~~ 260 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGP------DSCCIDSDDNLYVAMYG-----------QGRVLVFN-KRGYP 260 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEE------EEEEEBTTCCEEEEEET-----------TTEEEEEC-TTSCE
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccce------eeeeEcCCCCEEEEEcC-----------CCEEEEEC-CCCcE
Confidence 999999874 44332221 12222 47999999998887654 38999999 67999
Q ss_pred EEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCCCCEEEEecCC
Q 016446 319 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 381 (389)
Q Consensus 319 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpdg~~LaSgs~D 381 (389)
+..+.--.. ..++...+++++|.|++..|+..+.|
T Consensus 261 l~~i~~P~~----------------------------~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 261 IGQILIPGR----------------------------DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEEECTTG----------------------------GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEeCCCc----------------------------CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 988753220 00011367899999999888776644
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.97 E-value=4.6e-07 Score=85.08 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=148.3
Q ss_pred ecccCceeEEEecCCCeEEEEecC-------CCeEEEEeCCCCeEEEEec------CCcEEEEEEc-CCceEEEEecCCC
Q 016446 98 ESLKWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS------DKHVQEIKIS-PGIMLLIFNRSSS 163 (389)
Q Consensus 98 ~~~~~~~~v~Fs~pdG~~Las~s~-------D~tiklWdl~~g~~l~tl~------~~~V~~vafS-~g~~la~~~~~s~ 163 (389)
+.+..+...+|+ |||++.++... +++|..||.++++...... ...=..++|. +|..|.++...
T Consensus 15 ~~~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-- 91 (314)
T d1pjxa_ 15 EDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-- 91 (314)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT--
T ss_pred cCCCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC--
Confidence 455567789998 89998876433 5689999998887543332 1234679999 57777766433
Q ss_pred CeeEEEEEcCCCeEEEEEeec-CC----ceeEEEEEecCCCeEEEEeC-------------CCcEEEEECC-CCeEEEEc
Q 016446 164 HVPLKILSIEDGTVLKVFYHL-LH----RNKKVDFIEQFNEKLLVKQE-------------NENLQILDVR-NAELMEVS 224 (389)
Q Consensus 164 d~tiklWd~~tG~~l~tl~~~-~~----~~~~v~f~~~~~~~l~~~s~-------------D~tIklWd~~-tg~~~~~l 224 (389)
..|...+..++ ....+... .+ ..+.++|. ++|...++-.. ..+=+||-+. .|+..+..
T Consensus 92 -~~i~~~~~~g~-~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~ 168 (314)
T d1pjxa_ 92 -LGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD 168 (314)
T ss_dssp -TEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE
T ss_pred -CeEEEEeCCCc-EEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee
Confidence 45888886554 33333211 11 13567876 55555554221 1122444332 45544433
Q ss_pred ccCCCceEEEEEcCCCc-----EEEEEc-CCeEEEEeCC--CcEE-----EEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 225 RTEFMTPSAFIFLYENQ-----LFLTFR-NRTVAVWNFR--GELV-----TSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 225 ~gh~~~v~sv~fspdg~-----~laS~s-D~tIklWd~~--G~~l-----~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
.+....+.++|+|++. +.++-+ .+.|..+|++ |.+. ..+.+.... .-..++|.++|++.++.
T Consensus 169 -~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~----~pdGiavD~~GnlyVa~ 243 (314)
T d1pjxa_ 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG----GADGMDFDEDNNLLVAN 243 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC----EEEEEEEBTTCCEEEEE
T ss_pred -CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc----cceeeEEecCCcEEEEE
Confidence 3344678899999874 566666 8888888874 5432 233322211 13579999999998875
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEECCC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 371 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafSpd 371 (389)
.. .+.|..+|..+|+.+.++..+. ....+|+|.||
T Consensus 244 ~~-----------~g~I~~~dp~~g~~~~~i~~p~----------------------------------~~~t~~afg~d 278 (314)
T d1pjxa_ 244 WG-----------SSHIEVFGPDGGQPKMRIRCPF----------------------------------EKPSNLHFKPQ 278 (314)
T ss_dssp ET-----------TTEEEEECTTCBSCSEEEECSS----------------------------------SCEEEEEECTT
T ss_pred cC-----------CCEEEEEeCCCCEEEEEEECCC----------------------------------CCEEEEEEeCC
Confidence 43 2789999988888887776554 47899999999
Q ss_pred CCEE-EEecCCCcEEE
Q 016446 372 RNEI-YTGNRHGLVHV 386 (389)
Q Consensus 372 g~~L-aSgs~D~tIrl 386 (389)
+++| ++.+..++|.-
T Consensus 279 ~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 279 TKTIFVTEHENNAVWK 294 (314)
T ss_dssp SSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 9865 66667776643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.2e-07 Score=94.20 Aligned_cols=294 Identities=11% Similarity=0.090 Sum_probs=165.8
Q ss_pred EEEee--ccEEEEE---------ecCceEEEEecccceeeeeeecC--CcceEEEEEEeeCCCEEEEEEEeecCCCccee
Q 016446 8 EIVAA--RDIVFAL---------AHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 74 (389)
Q Consensus 8 ~i~~~--~~~~a~~---------~~~gtiklW~~~tg~~l~tl~~~--~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~ 74 (389)
...++ ++.|+.. +..+..-++|+.+|+.- .|... ....+....|||||+.||.+. +
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~iafv~-----~----- 133 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIF-----E----- 133 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEE-----T-----
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCccCCccccceeeeccCCceEEEEe-----c-----
Confidence 33455 6666654 34577888899877642 33221 123455688999999999863 2
Q ss_pred eeeeeEeEeccCCCCC------cceeEe--------eecccCceeEEEecCCCeEEEEecCC-C----------------
Q 016446 75 CRSTKIEYIRRGKPDS------GFALFE--------SESLKWPGFVEFDDVNGKVLTYSAQD-S---------------- 123 (389)
Q Consensus 75 ~~~~~l~~i~~g~~~~------~~~l~~--------~~~~~~~~~v~Fs~pdG~~Las~s~D-~---------------- 123 (389)
+.+.+.+...++..+ ...++. .+..+...++.|| |||+.||....| .
T Consensus 134 -~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS-PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p 211 (465)
T d1xfda1 134 -NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (465)
T ss_dssp -TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred -ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC-CCCCeEEEEEecccccceeecccccccccc
Confidence 344455544443310 000111 0011222357798 999999987522 1
Q ss_pred -----------------eEEEEeCCCCeEEE-Eec-------CCcEEEEEEcCCceEEEE--ecCCCCeeEEEEEcCCCe
Q 016446 124 -----------------IYKVFDLKNYTMLY-SIS-------DKHVQEIKISPGIMLLIF--NRSSSHVPLKILSIEDGT 176 (389)
Q Consensus 124 -----------------tiklWdl~~g~~l~-tl~-------~~~V~~vafS~g~~la~~--~~~s~d~tiklWd~~tG~ 176 (389)
.+.+.|++++.... .+. ...+..+.++|+..++.. ........|.++|..+|+
T Consensus 212 ~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~ 291 (465)
T d1xfda1 212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (465)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence 34556665554221 111 124678899965544433 223444578889999999
Q ss_pred EEEEEeecCC-ce----eEEEEEecCCCeEEE--Ee-CCC--cEEEEEC------CCCeEEEEcccCCCceEEE-EEcCC
Q 016446 177 VLKVFYHLLH-RN----KKVDFIEQFNEKLLV--KQ-ENE--NLQILDV------RNAELMEVSRTEFMTPSAF-IFLYE 239 (389)
Q Consensus 177 ~l~tl~~~~~-~~----~~v~f~~~~~~~l~~--~s-~D~--tIklWd~------~tg~~~~~l~gh~~~v~sv-~fspd 239 (389)
+...+..... .+ ....|+ +++..++. .+ .++ .+...++ ..+..++.|......|..+ +|.++
T Consensus 292 ~~~~~~e~~~~wv~~~~~~p~~~-~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~ 370 (465)
T d1xfda1 292 CTKKHEDESEAWLHRQNEEPVFS-KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370 (465)
T ss_dssp EEEEEEEECSSCCCCCCCCCEEC-TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred EEEEEEEcCCceEeccCCceeEc-cCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCC
Confidence 8877664322 22 234555 66765432 22 333 2333322 1344445555566677776 68888
Q ss_pred CcEEE-EEc-CC--eEEEEeC--CCc-EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEe
Q 016446 240 NQLFL-TFR-NR--TVAVWNF--RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 312 (389)
Q Consensus 240 g~~la-S~s-D~--tIklWd~--~G~-~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd 312 (389)
++.+- ++. ++ .-.||-+ +|. ..+.|..... ..|...++.|||||++++-.+.. -.--.++|++
T Consensus 371 ~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~--~~~~~~~~~~S~~~~y~v~~~s~--------~~~P~~~~~~ 440 (465)
T d1xfda1 371 GNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLV--ENCTYFSASFSHSMDFFLLKCEG--------PGVPMVTVHN 440 (465)
T ss_dssp TTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSS--SSCCCCEEEECTTSSEEEEECCS--------SSSCCEEEEE
T ss_pred CCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccC--CCCCEEEEEECCCCCEEEEEeec--------CCCCeEEEEE
Confidence 76653 443 32 3346654 342 2222221111 22446899999999999966542 2335789999
Q ss_pred CCCCeEEEEecCC
Q 016446 313 ILTGKCLAKINAT 325 (389)
Q Consensus 313 ~~tg~~l~tl~gH 325 (389)
..+|+.+..|...
T Consensus 441 ~~~~~~~~~Le~N 453 (465)
T d1xfda1 441 TTDKKKMFDLETN 453 (465)
T ss_dssp TTTCCEEEEEECC
T ss_pred CCCCCEEEEEcCC
Confidence 9999999999754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.78 E-value=1.8e-05 Score=73.81 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=138.9
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecC--C
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--D 122 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~--D 122 (389)
-....++|.|+|+..++ + ... ..|.-++ +.|+. ....+ .+..+.|..++|+ |||+++++... +
T Consensus 40 ~~lEG~~~D~~G~Ly~~---D-~~~------g~I~ri~-p~g~~--~~~~~-~~~~~~p~gla~~-~dG~l~va~~~~~~ 104 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLL---D-VFE------GNIFKIN-PETKE--IKRPF-VSHKANPAAIKIH-KDGRLFVCYLGDFK 104 (319)
T ss_dssp CCEEEEEECTTSCEEEE---E-TTT------CEEEEEC-TTTCC--EEEEE-ECSSSSEEEEEEC-TTSCEEEEECTTSS
T ss_pred cCcEeCEECCCCCEEEE---E-CCC------CEEEEEE-CCCCe--EEEEE-eCCCCCeeEEEEC-CCCCEEEEecCCCc
Confidence 34578999999985544 1 122 3333334 23332 11122 2344567789998 89998886543 2
Q ss_pred CeEEEE--eCCCCeEEEEec----CCcEEEEEEc-CCceEEEEecCCC----CeeEEEEEcCCCeEEEEEeecCCceeEE
Q 016446 123 SIYKVF--DLKNYTMLYSIS----DKHVQEIKIS-PGIMLLIFNRSSS----HVPLKILSIEDGTVLKVFYHLLHRNKKV 191 (389)
Q Consensus 123 ~tiklW--dl~~g~~l~tl~----~~~V~~vafS-~g~~la~~~~~s~----d~tiklWd~~tG~~l~tl~~~~~~~~~v 191 (389)
...++. +..++....... ......+++. +|.+.+ +..... -+.+...+.. |+.+..+......-+.+
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~v-td~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGi 182 (319)
T d2dg1a1 105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGI 182 (319)
T ss_dssp SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEE
T ss_pred cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceee-cccccccccCcceeEEEecc-cceeEEEeeccceeeee
Confidence 344444 444444433332 2468899999 565444 322211 1345555543 44444444333455789
Q ss_pred EEEecCCCeEEEE-eCCCcEEEEECCC-CeEEE-------EcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCCCcEE
Q 016446 192 DFIEQFNEKLLVK-QENENLQILDVRN-AELME-------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 261 (389)
Q Consensus 192 ~f~~~~~~~l~~~-s~D~tIklWd~~t-g~~~~-------~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~G~~l 261 (389)
+|+ +++..|..+ +..+.|..+|+.. |.... ...+....+-.+++.++|++.++.. .+.|..+|.+|+++
T Consensus 183 a~s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l 261 (319)
T d2dg1a1 183 ALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI 261 (319)
T ss_dssp EEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred eec-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEE
Confidence 998 677776555 6889999999763 22211 1112223467899999999998887 99999999999998
Q ss_pred EEec------cCcCCcCCCCeeEEEECCCCCEEEEEecC
Q 016446 262 TSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKA 294 (389)
Q Consensus 262 ~tl~------gh~~~~~~~~v~sv~fSpdG~~laS~s~D 294 (389)
.++. ++... +.+++|.|++..|.....|
T Consensus 262 ~~i~~P~~~~~~~~~-----~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 262 GQILIPGRDEGHMLR-----STHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEECTTGGGTCSCB-----CCEEEECTTSCEEEEEEEC
T ss_pred EEEeCCCcCCCcCce-----eeeEEEeCCCCEEEEEcCC
Confidence 8775 23222 5799999999888776544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.75 E-value=4.1e-06 Score=78.38 Aligned_cols=240 Identities=11% Similarity=0.080 Sum_probs=143.9
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEe----eecccCceeEEEecCCCeEEEEecC
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE----SESLKWPGFVEFDDVNGKVLTYSAQ 121 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~----~~~~~~~~~v~Fs~pdG~~Las~s~ 121 (389)
....++|.|||+.+++... ......+-..|.-++...++. ..+. ....+.|..++|+ |||..|..+..
T Consensus 19 g~EGpa~d~dG~ly~~~~~---~~~~~~~~g~I~r~d~~~~~~----~~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~ 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPE---VEVNGKPAGEILRIDLKTGKK----TVICKPEVNGYGGIPAGCQCD-RDANQLFVADM 90 (314)
T ss_dssp TCEEEEECTTSCEEEEETT---CEETTEECCEEEEECTTTCCE----EEEECCEETTEECCEEEEEEC-SSSSEEEEEET
T ss_pred CCeEeEEeCCCCEEEEECc---cccccccCCEEEEEECCCCcE----EEEECCccccCCCcceeEEEe-CCCCEEEEEEC
Confidence 4467899999997766221 100111113344455555543 1121 1122346679998 89987776776
Q ss_pred CCeEEEEeCCCCeEEEEec----C---CcEEEEEEcC-CceEEEEecCC-------------CCeeEEEEEcCCCeEEEE
Q 016446 122 DSIYKVFDLKNYTMLYSIS----D---KHVQEIKISP-GIMLLIFNRSS-------------SHVPLKILSIEDGTVLKV 180 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~----~---~~V~~vafS~-g~~la~~~~~s-------------~d~tiklWd~~tG~~l~t 180 (389)
...|...+...+.. ..+. + ...++++|.+ |...+ +.... ..+.|..++. .|+....
T Consensus 91 ~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~ 167 (314)
T d1pjxa_ 91 RLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQV 167 (314)
T ss_dssp TTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEE
T ss_pred CCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCCEEE-ecCccCcccccccceeccCCceEEEEee-cCceeEe
Confidence 67788889754442 2221 1 1357899995 55544 32221 1223444442 5665554
Q ss_pred EeecCCceeEEEEEecCCC----eEEEE-eCCCcEEEEECCC-CeE-----EEEccc-CCCceEEEEEcCCCcEEEEEc-
Q 016446 181 FYHLLHRNKKVDFIEQFNE----KLLVK-QENENLQILDVRN-AEL-----MEVSRT-EFMTPSAFIFLYENQLFLTFR- 247 (389)
Q Consensus 181 l~~~~~~~~~v~f~~~~~~----~l~~~-s~D~tIklWd~~t-g~~-----~~~l~g-h~~~v~sv~fspdg~~laS~s- 247 (389)
..+ ...-+.++|+ ++++ .|..+ +..+.|..+|+.. |.. ...+.+ +......+++.++|++.++..
T Consensus 168 ~~~-~~~pNGi~~~-~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 168 DTA-FQFPNGIAVR-HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEE-ESSEEEEEEE-ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred eCC-cceeeeeEEC-CCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence 432 3444788998 4443 45554 5888898888753 333 122222 334577899999999988886
Q ss_pred CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 248 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 248 D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
.+.|..+|.+ |+++.++..+... ..+++|.||++.|..... ..++|.--++
T Consensus 246 ~g~I~~~dp~~g~~~~~i~~p~~~-----~t~~afg~d~~~lyVt~~----------~~g~i~~~~~ 297 (314)
T d1pjxa_ 246 SSHIEVFGPDGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEH----------ENNAVWKFEW 297 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEET----------TTTEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEECCCCC-----EEEEEEeCCCCEEEEEEC----------CCCcEEEEEC
Confidence 8999999998 6777767654433 589999999986644432 2477766664
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.63 E-value=7.4e-05 Score=68.87 Aligned_cols=216 Identities=8% Similarity=0.003 Sum_probs=143.1
Q ss_pred eEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEee
Q 016446 105 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 105 ~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~ 183 (389)
+..|++.+|++.-+--..+.|.-||+++++...--....+.++++. +|.+++++ . .-|.++|..+|+...-...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~-~----~gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D----DGLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T----TEEEEEETTTCCEEEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE-e----CccEEeecccceeeEEeee
Confidence 4667655677666666778899999988875322225678899998 67666543 2 2488999999876433221
Q ss_pred -c---CCceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEE-EEEc-CCeEEE
Q 016446 184 -L---LHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAV 253 (389)
Q Consensus 184 -~---~~~~~~v~f~~~~~~~l~~~s----~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~l-aS~s-D~tIkl 253 (389)
. ....+.+.+. ++|...++.. ..+.-.+|.+..|+..+.+.+. ...+.++|+|+++.+ .+.+ .+.|..
T Consensus 97 ~~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp STTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred ecCCCcccceeeEEC-CCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCCCceEEEeecccceeeE
Confidence 1 1123555554 4454444433 2345678888888877665443 467899999999855 4556 788888
Q ss_pred EeCCCc---------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecC
Q 016446 254 WNFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 324 (389)
Q Consensus 254 Wd~~G~---------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~g 324 (389)
++++++ ....+.+-.. ....+++.++|.+.++.-. .+.|..+| .+|+.+..++-
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g-----~pdG~~vD~~GnlWva~~~-----------~g~V~~~d-p~G~~~~~i~l 237 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKG-----GMDGSVCDAEGHIWNARWG-----------EGAVDRYD-TDGNHIARYEV 237 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSS-----EEEEEEECTTSCEEEEEET-----------TTEEEEEC-TTCCEEEEEEC
T ss_pred eeecccccccccceEEEeccCcccc-----cccceEEcCCCCEEeeeeC-----------CCceEEec-CCCcEeeEecC
Confidence 876421 1122222222 2468999999998887543 27899999 67999988865
Q ss_pred CCCCCCcccccCCCCCCCccccccccceecccccccCCEEEEEEC-CCCCEEEEe
Q 016446 325 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTG 378 (389)
Q Consensus 325 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~svafS-pdg~~LaSg 378 (389)
-. ..+++++|- ||+++|+-.
T Consensus 238 P~----------------------------------~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 238 PG----------------------------------KQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp SC----------------------------------SBEEEEEEESTTSCEEEEE
T ss_pred CC----------------------------------CceEEEEEeCCCCCEEEEE
Confidence 33 478999995 898888643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.51 E-value=1.1e-05 Score=71.05 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=80.9
Q ss_pred CC--CeEEEEecCCCeEEEEeCCCCeEEE-EecCCcEEEEEEc-CCceEEEEec-CCCC--eeEEEEEcCCCeEEEEEee
Q 016446 111 VN--GKVLTYSAQDSIYKVFDLKNYTMLY-SISDKHVQEIKIS-PGIMLLIFNR-SSSH--VPLKILSIEDGTVLKVFYH 183 (389)
Q Consensus 111 pd--G~~Las~s~D~tiklWdl~~g~~l~-tl~~~~V~~vafS-~g~~la~~~~-~s~d--~tiklWd~~tG~~l~tl~~ 183 (389)
|| |+.+|..+. +.|-+-|+.+|+..+ +-....+...+|| ||++||.... ++.+ ..|.+.++.+|+..+....
T Consensus 8 Pdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~ 86 (281)
T d1k32a2 8 PDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF 86 (281)
T ss_dssp EEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred CCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec
Confidence 88 999987764 455566888888643 2234678899999 6999986543 2222 3477788888877653211
Q ss_pred c------CCceeEEEEEecCCCeEEEEe------CCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc
Q 016446 184 L------LHRNKKVDFIEQFNEKLLVKQ------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 247 (389)
Q Consensus 184 ~------~~~~~~v~f~~~~~~~l~~~s------~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s 247 (389)
. .......+|+ |++..|+... ....+.+.+...++......+ ....+.++++++.++...
T Consensus 87 ~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 87 SGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHILFADGRRVIGRNT 158 (281)
T ss_dssp CEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEEEEETTEEEEEESC
T ss_pred CCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC---ccceeeecCCCeEEEeec
Confidence 0 1123566776 7788888753 234466777777776554332 233444555555555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.93 E-value=0.0071 Score=54.98 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=123.9
Q ss_pred CceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEe--c----CCcEEEEEEcC-CceEEEEecC-CCCeeEEEEEcC
Q 016446 102 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S----DKHVQEIKISP-GIMLLIFNRS-SSHVPLKILSIE 173 (389)
Q Consensus 102 ~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl--~----~~~V~~vafS~-g~~la~~~~~-s~d~tiklWd~~ 173 (389)
.+.++++. +||.+++.+ .+ -+.++|.++|+...-. . ...++++++.| |.+.++.... .....-.+|.+.
T Consensus 60 ~~~~i~~~-~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 60 MGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp CEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcEEEEEe-cCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence 45678997 789888854 44 5889999999853322 1 24689999995 5544333211 112345677778
Q ss_pred CCeEEEEEeecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCC------Ce--EEEEcccCCCceEEEEEcCCCcEEE
Q 016446 174 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN------AE--LMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 174 tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~t------g~--~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
+|+....+... ..-+.++|+ +++..+... +..+.|..+++.. ++ ....+.+....+..+++..+|++.+
T Consensus 137 ~g~~~~~~~~~-~~~Ng~~~s-~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 137 KGKVTKLFADI-SIPNSICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp TTEEEEEEEEE-SSEEEEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred CCcEEEEeecc-CCcceeeec-CCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence 88877666542 455788887 666666554 6788998887642 21 2233455566789999999999998
Q ss_pred EEc-CCeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEEC-CCCCEEEEEe
Q 016446 245 TFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYC 292 (389)
Q Consensus 245 S~s-D~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fS-pdG~~laS~s 292 (389)
+.. .+.|..+|.+|+++..++--.. .+.+++|= ||++.|...+
T Consensus 215 a~~~~g~V~~~dp~G~~~~~i~lP~~-----~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 215 ARWGEGAVDRYDTDGNHIARYEVPGK-----QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEETTTEEEEECTTCCEEEEEECSCS-----BEEEEEEESTTSCEEEEEE
T ss_pred eeeCCCceEEecCCCcEeeEecCCCC-----ceEEEEEeCCCCCEEEEEE
Confidence 886 8889999999999988853222 27899995 8888776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.90 E-value=0.0079 Score=55.09 Aligned_cols=267 Identities=9% Similarity=-0.020 Sum_probs=134.4
Q ss_pred eEEEEEEeeCCCEEEEEEEeecCCC--cceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC-
Q 016446 46 VIRSLFYNKNNDSLITVSVYASDNF--SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD- 122 (389)
Q Consensus 46 ~v~sv~~spdg~~l~s~s~~~~~d~--~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D- 122 (389)
.+...+...+|+.++.+.. ....| ..-....+.+||..+++...... ....+..+-..+++. +||++++.|+.+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~-~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~ 97 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSY-RNDAFGGSPGGITLTSSWDPSTGIVSDRTV-TVTKHDMFCPGISMD-GNGQIVVTGGNDA 97 (387)
T ss_dssp CSEEEEETTTTEEEEEEEC-CCTTTCSCCCSEEEEEEECTTTCCBCCCEE-EECSCCCSSCEEEEC-TTSCEEEECSSST
T ss_pred ccEEEEEeeCCEEEEEEee-cCcccCCCCCceeEEEEEECCCCcEeecCC-CCCCcccceeEEEEe-cCCcEEEeecCCC
Confidence 3344555678887766432 11111 11122456789999888732211 111111111346787 899999998765
Q ss_pred CeEEEEeCCCCeEEE--Eec-CCcEEEEEEc-CCceEEEEecCCC---CeeEEEEEcCCCeEEEEEee----------cC
Q 016446 123 SIYKVFDLKNYTMLY--SIS-DKHVQEIKIS-PGIMLLIFNRSSS---HVPLKILSIEDGTVLKVFYH----------LL 185 (389)
Q Consensus 123 ~tiklWdl~~g~~l~--tl~-~~~V~~vafS-~g~~la~~~~~s~---d~tiklWd~~tG~~l~tl~~----------~~ 185 (389)
.++.+||..+.+-.. .+. ..+-.++++. +|..++.+..... -..+.+||..+.+-. .+.. +.
T Consensus 98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~ 176 (387)
T d1k3ia3 98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQ 176 (387)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTT
T ss_pred cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCCccccccccccc
Confidence 689999998877432 222 1233345555 7888877643321 146899999887543 2210 00
Q ss_pred C----ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEc--c-c---CC--CceEEEEE-cCCCcEEEEEc--CC-
Q 016446 186 H----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--R-T---EF--MTPSAFIF-LYENQLFLTFR--NR- 249 (389)
Q Consensus 186 ~----~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l--~-g---h~--~~v~sv~f-spdg~~laS~s--D~- 249 (389)
. .-....|..+++..+..+..+..+.+.|..+....... . . +. ..-.++.+ ..+|++++-+. ++
T Consensus 177 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~ 256 (387)
T d1k3ia3 177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 256 (387)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCC
Confidence 0 01222333344555555666777777777776543321 0 0 11 01122333 34677777664 21
Q ss_pred ------eEEEEeC---C-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 250 ------TVAVWNF---R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 250 ------tIklWd~---~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
...+.++ . .....+..+. .+.+-. --+.+..|||++++.|+.+.....-......++.+||..+++-
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~-~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W 333 (387)
T d1k3ia3 257 DSDATTNAHIITLGEPGTSPNTVFASNG-LYFART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 333 (387)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTC-CSSCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcccceeecccccccccCCCceeeccc-cccccc-cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence 2223332 1 1111111111 110000 1356667999999999864210000001113688999887653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.78 E-value=0.018 Score=54.86 Aligned_cols=246 Identities=12% Similarity=0.129 Sum_probs=138.1
Q ss_pred EEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCC----
Q 016446 47 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---- 122 (389)
Q Consensus 47 v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D---- 122 (389)
+..+.+||||+.|+.+...++.+ ...+++.|+.+|+.... .+.... ..+++|+ +|++.|.....|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e-----~~~l~v~Dl~tg~~~~~--~i~~~~---~~~~~W~-~D~~~~~Y~~~~~~~~ 195 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSD-----WVTIKFMKVDGAKELPD--VLERVK---FSCMAWT-HDGKGMFYNAYPQQDG 195 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCS-----CEEEEEEETTTTEEEEE--EEEEEC---SCCEEEC-TTSSEEEEEECCCCSS
T ss_pred ecceEecCCCCEEEEEeccccCc-----hheeEEeccCcceeccc--cccccc---ccceEEc-CCCCEEEEEEeccccC
Confidence 45678899999998766666665 36778889999986211 111111 1368998 899988765433
Q ss_pred ------------CeEEEEeCCCCe----EEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEE--EcCCCe-----
Q 016446 123 ------------SIYKVFDLKNYT----MLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKIL--SIEDGT----- 176 (389)
Q Consensus 123 ------------~tiklWdl~~g~----~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklW--d~~tG~----- 176 (389)
..|.+|.+.+.. +++.-.. ..+..+..| +++++......+.+.+.++| |+....
T Consensus 196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 258888887654 3333332 367788889 78887665544444555555 433211
Q ss_pred --EEEEEeecCCceeEEEEEecCCCeEEE-Ee---CCCcEEEEECCCCeE---EEEcccCCCceEEEEEcCCCc-EEEEE
Q 016446 177 --VLKVFYHLLHRNKKVDFIEQFNEKLLV-KQ---ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ-LFLTF 246 (389)
Q Consensus 177 --~l~tl~~~~~~~~~v~f~~~~~~~l~~-~s---~D~tIklWd~~tg~~---~~~l~gh~~~v~sv~fspdg~-~laS~ 246 (389)
....+.. .......+....++.+.. +. .++.|-.-++..... ...+..+...+..-.++..+. ++++-
T Consensus 276 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLID--NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEEC--SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeec--ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 0111110 111222232234555544 32 446666667665432 333455666666555665444 44555
Q ss_pred c-CC--eEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEE-EEEecCCCcccccCCCCCeEEEEeCCCCeE
Q 016446 247 R-NR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKC 318 (389)
Q Consensus 247 s-D~--tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~l-aS~s~D~~~~~~~~s~D~tIklWd~~tg~~ 318 (389)
. |+ .|++++.. ++....+..-. ..|..+...++...+ ++.+. --.-.++.-+|+.||+.
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~-----~sv~~~~~~~~~~~~~~~~ss--------~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEV-----GSVVGYSGQKKDTEIFYQFTS--------FLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCS-----SEEEEEECCTTCSEEEEEEEC--------SSCCCEEEEEETTSSSC
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCC-----ceEeeccCCCCCCEEEEEEcC--------CCCCCeEEEEECCCCCc
Confidence 5 65 68889997 55433322111 225555555655443 33321 12347899999999864
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.58 E-value=0.046 Score=54.17 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=88.0
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEE-------E-EecCCC---eEEEEeCCCcEEEEECCCCeEEEEccc-CCCce--
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVD-------F-IEQFNE---KLLVKQENENLQILDVRNAELMEVSRT-EFMTP-- 231 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~-------f-~~~~~~---~l~~~s~D~tIklWd~~tg~~~~~l~g-h~~~v-- 231 (389)
.|---|+.||+.+-.++...+-++... + ...+++ .++..+.++.+.++|..+|+++...+- ...+.
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 445569999999988875434333211 1 112332 344467999999999999998653211 00000
Q ss_pred ---------------------------------EEEEEcCCCcEEEEEc-C-----------------------------
Q 016446 232 ---------------------------------SAFIFLYENQLFLTFR-N----------------------------- 248 (389)
Q Consensus 232 ---------------------------------~sv~fspdg~~laS~s-D----------------------------- 248 (389)
...++.|+..++..-. +
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 1456778777666432 2
Q ss_pred -------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEE
Q 016446 249 -------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 320 (389)
Q Consensus 249 -------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~ 320 (389)
|.|.-||+. |+.+-...--.. ..+=.++-.|.++..|+. ||.+|-+|..|||.|.
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~------~~gg~l~TagglVF~G~~-----------dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALW 493 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCC------CCCceeEECCCEEEEECC-----------CCcEEEEECCCCcEeE
Confidence 467788886 887755442211 122223335667777755 5999999999999998
Q ss_pred EecCC
Q 016446 321 KINAT 325 (389)
Q Consensus 321 tl~gH 325 (389)
..+-.
T Consensus 494 ~~~l~ 498 (560)
T d1kv9a2 494 QFEAQ 498 (560)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 87643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.40 E-value=0.069 Score=53.05 Aligned_cols=140 Identities=11% Similarity=-0.005 Sum_probs=84.4
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeE-------EEEE-ecCCC---eEEEEeCCCcEEEEECCCCeEEEEc----------
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKK-------VDFI-EQFNE---KLLVKQENENLQILDVRNAELMEVS---------- 224 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~-------v~f~-~~~~~---~l~~~s~D~tIklWd~~tg~~~~~l---------- 224 (389)
.+---|++||+++-.++.+.+.++. +.+. +.+++ .++..+.++.+.+.|.++|+.+...
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~ 352 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence 4556799999999988854343332 1111 12232 2344679999999999999986321
Q ss_pred -------------------------------ccCCCceEEEEEcCCCcEEEEEc-C------------------------
Q 016446 225 -------------------------------RTEFMTPSAFIFLYENQLFLTFR-N------------------------ 248 (389)
Q Consensus 225 -------------------------------~gh~~~v~sv~fspdg~~laS~s-D------------------------ 248 (389)
.+|+.. ..+|+|+..++.... +
T Consensus 353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~--~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG--VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC--BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccCcccccccccCceEEEeccccccccc--cceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 112111 256788777665432 2
Q ss_pred -------------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 249 -------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 249 -------------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
|+|.-+|+. |+.+-...-- .+ ..+=.++-.|.++..|+. |+.++-.|.+
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~-----~~~g~l~TagglVf~G~~-----------dg~l~A~Da~ 493 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FA-----AWGGTLYTKGGLVWYATL-----------DGYLKALDNK 493 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SC-----CCSBCEEETTTEEEEECT-----------TSEEEEEETT
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCC-CC-----CCcceeEecCCEEEEECC-----------CCeEEEEECC
Confidence 457777775 7776544311 11 111112224556666755 5999999999
Q ss_pred CCeEEEEecC
Q 016446 315 TGKCLAKINA 324 (389)
Q Consensus 315 tg~~l~tl~g 324 (389)
|||.|...+-
T Consensus 494 tGe~lW~~~l 503 (571)
T d2ad6a1 494 DGKELWNFKM 503 (571)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 9999977753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.34 E-value=0.059 Score=53.45 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred eEEEEEcCCCeEEEEEeecCCceeEEEE--------EecCC---CeEEEEeCCCcEEEEECCCCeEEEEccc--------
Q 016446 166 PLKILSIEDGTVLKVFYHLLHRNKKVDF--------IEQFN---EKLLVKQENENLQILDVRNAELMEVSRT-------- 226 (389)
Q Consensus 166 tiklWd~~tG~~l~tl~~~~~~~~~v~f--------~~~~~---~~l~~~s~D~tIklWd~~tg~~~~~l~g-------- 226 (389)
.|---|+.||+..-.++...+.++.... ...++ ..++..+.++.+.++|..+|+.+-..+.
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 3445688899988777643333332221 11222 2344467999999999999998653221
Q ss_pred ----------------------------CCCceEEEEEcCCCcEEEEEc-C-----------------------------
Q 016446 227 ----------------------------EFMTPSAFIFLYENQLFLTFR-N----------------------------- 248 (389)
Q Consensus 227 ----------------------------h~~~v~sv~fspdg~~laS~s-D----------------------------- 248 (389)
...+ ...+|+|+..++.... +
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w-~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cccccceeeeeeccccccceEEeecccCCccc-cccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence 1111 1246788776655432 2
Q ss_pred --------------CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 249 --------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 249 --------------~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
|++.-||+. ||.+-..+..... ++=..+-.|.++..|+. |+.++-+|.
T Consensus 443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~-----------dg~l~A~Da 505 (573)
T d1kb0a2 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTA-----------DGRLVAYHA 505 (573)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEET
T ss_pred ccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECC-----------CCeEEEEEC
Confidence 356677875 8777666543321 11123346778877765 599999999
Q ss_pred CCCeEEEEecC
Q 016446 314 LTGKCLAKINA 324 (389)
Q Consensus 314 ~tg~~l~tl~g 324 (389)
+||+.|..++-
T Consensus 506 ~TGe~LW~~~~ 516 (573)
T d1kb0a2 506 ATGEKLWEAPT 516 (573)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEeEEEEC
Confidence 99999988754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.21 E-value=0.031 Score=50.87 Aligned_cols=145 Identities=8% Similarity=0.026 Sum_probs=86.5
Q ss_pred cCCCeEEEEecCCC-----------eEEEEeCCCCeE--EEEec---CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEc
Q 016446 110 DVNGKVLTYSAQDS-----------IYKVFDLKNYTM--LYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSI 172 (389)
Q Consensus 110 ~pdG~~Las~s~D~-----------tiklWdl~~g~~--l~tl~---~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~ 172 (389)
+.||++++.|+.+. .+.+||+++++- +..+. .....++++. +|.+++.+..+ ..++.+||.
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~~~~yd~ 105 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKTSLYDS 105 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCEEEEEG
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC--CcceeEecC
Confidence 57899999888531 377999998872 22222 2233456777 67776655333 368999999
Q ss_pred CCCeEEEEEeecCCce-eEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEEEEccc---------CCC-----ce
Q 016446 173 EDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRT---------EFM-----TP 231 (389)
Q Consensus 173 ~tG~~l~tl~~~~~~~-~~v~f~~~~~~~l~~~s~D------~tIklWd~~tg~~~~~l~g---------h~~-----~v 231 (389)
.+++-...-.-...+. ..++.. +++..++.++.+ .++.+||..+.+-...... |.. .-
T Consensus 106 ~~~~w~~~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
T d1k3ia3 106 SSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 184 (387)
T ss_dssp GGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred ccCcccccccccccccccceeee-cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence 9877643222111222 233433 566777776532 5799999998875443211 100 01
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 016446 232 SAFIFLYENQLFLTFR-NRTVAVWNFR 257 (389)
Q Consensus 232 ~sv~fspdg~~laS~s-D~tIklWd~~ 257 (389)
.-+...++|+++..+. ++.+.+.+..
T Consensus 185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 185 AWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECST
T ss_pred eEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 1133467888888876 7777777765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.17 E-value=0.074 Score=47.40 Aligned_cols=203 Identities=10% Similarity=-0.013 Sum_probs=130.4
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEecC--CcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLK 179 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~~--~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~ 179 (389)
+..++|++.++++.-+-..++.|+.-++..+.....+.. ..+.++|+. -++.|..+. ...+.|..-++....+..
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d--~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD--SQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEec--cCCCEEEEEecCCceEEE
Confidence 456899855566666667889999999865554434432 578999998 577776664 334789999986554433
Q ss_pred EEeecCCceeEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCeEEEEcccCCCceEEEEEcCCCcEE-EEEc-CCeEEEE
Q 016446 180 VFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVW 254 (389)
Q Consensus 180 tl~~~~~~~~~v~f~~~~~~~l~~~s~-D~tIklW--d~~tg~~~~~l~gh~~~v~sv~fspdg~~l-aS~s-D~tIklW 254 (389)
.+.........++.. |..+++.-... .+.-+|+ ++....+.......-..+.++++.+.++.| .+-. .++|..-
T Consensus 116 l~~~~l~~p~~l~vd-p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~ 194 (263)
T d1npea_ 116 LFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (263)
T ss_dssp EECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EecccccCCcEEEEe-cccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence 333334566888887 45666665532 2343455 665444444444445678899998776655 5545 8899999
Q ss_pred eCCCcEEEE-eccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCCC
Q 016446 255 NFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 326 (389)
Q Consensus 255 d~~G~~l~t-l~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH~ 326 (389)
|++|.-.++ +.+-..| .+|++. +.+|--... ..++|.--|..+|+.++++..+.
T Consensus 195 ~~~g~~~~~v~~~~~~P------~~lav~--~~~lYwtd~----------~~~~I~~~~~~~g~~~~~~~~~~ 249 (263)
T d1npea_ 195 NPAQPGRRKVLEGLQYP------FAVTSY--GKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPHK 249 (263)
T ss_dssp ETTEEEEEEEEECCCSE------EEEEEE--TTEEEEEET----------TTTEEEEEETTTTEEEEEECCSS
T ss_pred ECCCCCeEEEECCCCCc------EEEEEE--CCEEEEEEC----------CCCEEEEEECCCCccceEECCCC
Confidence 999764444 3332222 577774 455544333 24789999999999988775443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.14 E-value=0.029 Score=54.57 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=150.1
Q ss_pred EEEEecCceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCC--cceeeeeeeEeEeccCCCCC---
Q 016446 16 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF--SSLKCRSTKIEYIRRGKPDS--- 90 (389)
Q Consensus 16 ~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~--~~l~~~~~~l~~i~~g~~~~--- 90 (389)
+.++.++|.|+++-+-++++|+.+.- |+|+-. .++.| .+.|+-. .|.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipv----------F~~~~~--------~G~G~~~es~~il~-------~~~~~~t~~ 70 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPV----------FNRCSA--------TGWGQTNESVRIHE-------RTMSERTKK 70 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEES----------SSCCTT--------TCTTTBHHHHHHHH-------TTCC-----
T ss_pred EeeCCccceEEEEecCCcceEEEeee----------ecCCCC--------cccCcchhHHHHhh-------cccChhhhh
Confidence 56788999999999999999988764 466533 23332 1111100 111000
Q ss_pred -----cceeEeeecccCceeEEEec--CCCeEEEEe-cCCCeEEEEeCCCCeEEE--Eec-CCcEEEEEEc--C-CceEE
Q 016446 91 -----GFALFESESLKWPGFVEFDD--VNGKVLTYS-AQDSIYKVFDLKNYTMLY--SIS-DKHVQEIKIS--P-GIMLL 156 (389)
Q Consensus 91 -----~~~l~~~~~~~~~~~v~Fs~--pdG~~Las~-s~D~tiklWdl~~g~~l~--tl~-~~~V~~vafS--~-g~~la 156 (389)
....+.-.-..|| .++|.. +||++|... ..+..|-+=|+.+-++.. +++ ...+..++.. | -.+++
T Consensus 71 ~l~~~g~~~~~~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~ 149 (459)
T d1fwxa2 71 FLAANGKRIHDNGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVF 149 (459)
T ss_dssp ---------CCCCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEE
T ss_pred hhhccCcccccCCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEE
Confidence 0001111123344 566651 368877654 478899999999999855 555 4677888877 2 33444
Q ss_pred EEecCC---------------CCeeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCC--------------
Q 016446 157 IFNRSS---------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-------------- 207 (389)
Q Consensus 157 ~~~~~s---------------~d~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D-------------- 207 (389)
..+... ...++-..|.++.+......-- +....++++ ++|..+.+.+++
T Consensus 150 ~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e 227 (459)
T d1fwxa2 150 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAE 227 (459)
T ss_dssp EEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred ccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccC-CCCCEEEEEeccccCCcchhhccccc
Confidence 333211 1134567899999888776632 445678887 778888877743
Q ss_pred ------------------------CcEEEEECCCC---eEEEEcccCCCceEEEEEcCCCcEEEEEc--CCeEEEEeCC-
Q 016446 208 ------------------------ENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR- 257 (389)
Q Consensus 208 ------------------------~tIklWd~~tg---~~~~~l~gh~~~v~sv~fspdg~~laS~s--D~tIklWd~~- 257 (389)
+-+++-|.+.. ..+.++.. ...+..|.++|||+++..++ +.++-+.|++
T Consensus 228 ~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 228 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred ceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 23355665532 12222211 12456789999999999886 9999999974
Q ss_pred -Cc-----------EEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCC
Q 016446 258 -GE-----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 315 (389)
Q Consensus 258 -G~-----------~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~t 315 (389)
-+ .....+--.++ .-.+|..+|.-..|--- |..|--|++..
T Consensus 307 i~~~~~~~~~~~~~~~~e~elglgP------Lht~fd~~g~aytslfi-----------ds~v~kw~~~~ 359 (459)
T d1fwxa2 307 FDAVFYENADPRSAVVAEPELGLGP------LHTAFDGRGNAYTSLFL-----------DSQVVKWNIED 359 (459)
T ss_dssp HHHHHHSCC-GGGGEEECCBCCSCE------EEEEECTTSEEEEEETT-----------TTEEEEEEHHH
T ss_pred hhhhhcccCCccccEEeecccCcCc------cccccCCCceEEEEeec-----------cceEEEEecch
Confidence 11 11111111122 56789888864444334 46888999853
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.68 E-value=0.35 Score=47.64 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=47.4
Q ss_pred CcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCC
Q 016446 208 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 285 (389)
Q Consensus 208 ~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG 285 (389)
++|.-+|+.||+.+-+...-....... .+-.|.++..++ |+.++-+|.+ ||.|-.++=-... .-.-+.|..||
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~----~a~P~ty~~dG 518 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG----IGSPMTYSFKG 518 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC----CSCCEEEEETT
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc----eecceEEEECC
Confidence 578899999999875532211111111 222344555677 9999999997 9998666422111 01336666788
Q ss_pred C-EEEEE
Q 016446 286 D-LIISY 291 (389)
Q Consensus 286 ~-~laS~ 291 (389)
+ |||..
T Consensus 519 kqYi~v~ 525 (571)
T d2ad6a1 519 KQYIGSM 525 (571)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 66554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.62 E-value=0.39 Score=47.35 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=44.0
Q ss_pred CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 249 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 249 ~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|+|.-+|+. |+++-..+.+... ++=.++..|.++..|+. ||.+|-+|.+|||.|..++--
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~------~~g~lstagglVF~Gt~-----------dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEcCCCCcEEeecCCCCCC------ccceeEEcCCeEEEeCC-----------CCeEEEEECCCCcEeEEEECC
Confidence 578888986 9988776654332 33234457888887765 599999999999999888643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.02 E-value=0.28 Score=45.30 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCcEEEEE--c--C------------CeEEEEeCCCcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEE
Q 016446 228 FMTPSAFIFLYENQLFLTF--R--N------------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 291 (389)
Q Consensus 228 ~~~v~sv~fspdg~~laS~--s--D------------~tIklWd~~G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~ 291 (389)
...++.|++.++|.+++|- . + ++..+|..+++..+.+...... -+.|++|||+++|..+
T Consensus 149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~-----pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDF-----ANGINISPDGKYVYIA 223 (340)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESS-----EEEEEECTTSSEEEEE
T ss_pred ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCc-----cceeEECCCCCEEEEE
Confidence 3468999999999999983 1 1 4567777774333333322222 4899999999988776
Q ss_pred ecCCCcccccCCCCCeEEEEeCCCC
Q 016446 292 CKAEPEDQWMEGSAGSINVSSILTG 316 (389)
Q Consensus 292 s~D~~~~~~~~s~D~tIklWd~~tg 316 (389)
..- .+.|+.+++...
T Consensus 224 ~t~----------~~~i~~y~~~~~ 238 (340)
T d1v04a_ 224 ELL----------AHKIHVYEKHAN 238 (340)
T ss_dssp EGG----------GTEEEEEEECTT
T ss_pred eCC----------CCeEEEEEeCCC
Confidence 542 478999988643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.01 E-value=0.14 Score=49.31 Aligned_cols=57 Identities=5% Similarity=0.140 Sum_probs=42.3
Q ss_pred eeEeeecccCceeEEEecCCCeEEEEecCCCeEEEEeCCCCeE--EEEec--------CCcEEEEEEcC
Q 016446 93 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--------DKHVQEIKISP 151 (389)
Q Consensus 93 ~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~--l~tl~--------~~~V~~vafS~ 151 (389)
.++. +.+.+|++++|. |||++|++--..|+|++.+..+++. +..+. +.....|||+|
T Consensus 20 ~~ia-~~L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 20 KVIL-SNLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp EEEE-CCCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred EEEE-CCCCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 3443 346789999998 9999999765579999999888764 34432 14678999996
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.45 E-value=0.15 Score=50.18 Aligned_cols=141 Identities=8% Similarity=0.084 Sum_probs=84.2
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcceE-----------------------------------EEEEEeeCCC
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI-----------------------------------RSLFYNKNND 57 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v-----------------------------------~sv~~spdg~ 57 (389)
.+.++...++|.+.++|+.||+++.........+. ...+++|+.+
T Consensus 314 ~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~ 393 (560)
T d1kv9a2 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (560)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred eeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCC
Confidence 35788899999999999999999876543321111 1567888888
Q ss_pred EEEEEEEeecCCC--------------------------cceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecC
Q 016446 58 SLITVSVYASDNF--------------------------SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 111 (389)
Q Consensus 58 ~l~s~s~~~~~d~--------------------------~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~p 111 (389)
.+..-+......+ ..-....+.-+|+.+|+. +|.........+-..+ -
T Consensus 394 ~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~-----~W~~~~~~~~~gg~l~-T 467 (560)
T d1kv9a2 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-----AWKVPYPTHWNGGTLS-T 467 (560)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-----EEEEEESSSCCCCEEE-E
T ss_pred eeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeE-----eeeccCCCCCCCceeE-E
Confidence 7766543321110 000113344456677765 6663322222221222 1
Q ss_pred CCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE--EEEc-CC-ceEEEEe
Q 016446 112 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE--IKIS-PG-IMLLIFN 159 (389)
Q Consensus 112 dG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~--vafS-~g-~~la~~~ 159 (389)
.|-++..|+.|+.+|-+|.+||+.|.++. ...+.+ +.|. +| |++++.+
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 24466678999999999999999997775 222222 4555 66 4555543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.31 E-value=0.24 Score=47.51 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=46.7
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcE--EEEeccCcC-CcCCCCeeEEEECCC----CCEEEEEe
Q 016446 222 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLL-WHPDCNTNNIYITSD----QDLIISYC 292 (389)
Q Consensus 222 ~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~--l~tl~gh~~-~~~~~~v~sv~fSpd----G~~laS~s 292 (389)
+++...-...++++|.|||++|++-. .|+|++.+.. |+. +..+..-.. ..-......|+|+|| +.+.++++
T Consensus 20 ~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt 99 (450)
T d1crua_ 20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (450)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEe
Confidence 33333445889999999999999997 8999999986 543 233321100 000123578999996 67777665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=1 Score=39.48 Aligned_cols=180 Identities=9% Similarity=0.005 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCe----EEEEEeecCCceeEEEEEec
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT----VLKVFYHLLHRNKKVDFIEQ 196 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~----~l~tl~~~~~~~~~v~f~~~ 196 (389)
..||--++.+.+....++ ...+.+|+|. ..++|.-+ +...+.|+--++.... ....+.........+++- +
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~--D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD-~ 86 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS--DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD-W 86 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEE--ETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE-T
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEE--ECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe-e
Confidence 357777886555333334 3567789998 56777655 3344677766654211 112222223445667775 3
Q ss_pred CCCeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcC-CCcEEEEEc--CCeEEEEeCCCcEEEEeccCcCCcC
Q 016446 197 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHP 272 (389)
Q Consensus 197 ~~~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fsp-dg~~laS~s--D~tIklWd~~G~~l~tl~gh~~~~~ 272 (389)
.++.|-.. ...++|.+.++....+...+......+..+++.| .|.++.+.. .+.|.--+++|.-..++-.....
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~-- 164 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-- 164 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--
T ss_pred ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc--
Confidence 45666665 5778999999987776666666777899999987 667777764 55677777887755555433221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEE
Q 016446 273 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 319 (389)
Q Consensus 273 ~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l 319 (389)
...++++.|.++.|--+.. ..++|.--|+....+.
T Consensus 165 --~p~gl~iD~~~~~lYw~d~----------~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 165 --WPNGITLDLLSGRLYWVDS----------KLHSISSIDVNGGNRK 199 (266)
T ss_dssp --CEEEEEEETTTTEEEEEET----------TTTEEEEEETTSCSCE
T ss_pred --eeeEEEeeccccEEEEecC----------CcCEEEEEECCCCCEE
Confidence 1479999998887765532 3578888887544443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.47 E-value=0.29 Score=48.19 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=81.4
Q ss_pred ccEEEEEecCceEEEEecccceeeeeeecCCcce----------------------------------EEEEEEeeCCCE
Q 016446 13 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEV----------------------------------IRSLFYNKNNDS 58 (389)
Q Consensus 13 ~~~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~----------------------------------v~sv~~spdg~~ 58 (389)
...++...++|.+..+|+.||+.+-..+....+. -...+|+|+...
T Consensus 327 ~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~ 406 (573)
T d1kb0a2 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (573)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcce
Confidence 3678999999999999999999987554322111 113578888776
Q ss_pred EEEEEEeecCCCc---------------------------------ceeeeeeeEeEeccCCCCCcceeEeeecccCc--
Q 016446 59 LITVSVYASDNFS---------------------------------SLKCRSTKIEYIRRGKPDSGFALFESESLKWP-- 103 (389)
Q Consensus 59 l~s~s~~~~~d~~---------------------------------~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~-- 103 (389)
+..-+......+. .-....+.=+|+.+||. +|........
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~-----~W~~~~~~p~~g 481 (573)
T d1kb0a2 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----AWSVEHVSPWNG 481 (573)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----EEEEEESSSCCC
T ss_pred EEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCce-----EeeecCCCCCCC
Confidence 6654433221110 00011233455566654 6653321111
Q ss_pred eeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec-CCcEEE--EEEc-CCc-eEEEE
Q 016446 104 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQE--IKIS-PGI-MLLIF 158 (389)
Q Consensus 104 ~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~-~~~V~~--vafS-~g~-~la~~ 158 (389)
..++- .|.+|..|+.|+.++-+|.+||+.|.++. ...+.+ +.|. +|+ ++++.
T Consensus 482 g~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 482 GTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (573)
T ss_dssp CEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 12433 35566668899999999999999998776 222322 4555 664 44444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=1.6 Score=38.17 Aligned_cols=231 Identities=12% Similarity=0.105 Sum_probs=137.1
Q ss_pred ceEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccC
Q 016446 23 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 102 (389)
Q Consensus 23 gtiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~ 102 (389)
..|+-.++++.+ ...+.... ..+..|+|.+..+.|--+ +...+ .+..+.+-. .................
T Consensus 10 ~~I~~~~l~~~~-~~~~~~~~-~~~~~id~d~~~~~lYw~--D~~~~----~I~~~~l~~---~~~~~~~~~~~~~~~~~ 78 (266)
T d1ijqa1 10 HEVRKMTLDRSE-YTSLIPNL-RNVVALDTEVASNRIYWS--DLSQR----MICSTQLDR---AHGVSSYDTVISRDIQA 78 (266)
T ss_dssp SSEEEEETTSCC-CEEEECSC-SSEEEEEEETTTTEEEEE--ETTTT----EEEEEEC-----------CEEEECSSCSC
T ss_pred CeEEEEECCCCc-ceeeeCCC-CceEEEEEEeCCCEEEEE--ECCCC----EEEEEEecC---CCCCcceEEEEeCCCCC
Confidence 358888987544 33443333 456789999998877652 12121 222222211 11000111122234556
Q ss_pred ceeEEEecCCCeEEEEecCCCeEEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEEEcCCCeEEE
Q 016446 103 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK 179 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~s~D~tiklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklWd~~tG~~l~ 179 (389)
|..+|++...+++-.+-...++|.+-++....+...+. .....++++.| .++|.-+... ....|.--++ .|....
T Consensus 79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~-dGs~~~ 156 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGL-NGVDIY 156 (266)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEET-TSCCEE
T ss_pred cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEecc-CCCcee
Confidence 78899985567777777788999999986554443333 35789999985 5566555433 2345666665 455455
Q ss_pred EEe-ecCCceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEEc--ccCCCceEEEEEcCCCcEEEEEc-CCeEEEE
Q 016446 180 VFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 254 (389)
Q Consensus 180 tl~-~~~~~~~~v~f~~~~~~~l~~~-s~D~tIklWd~~tg~~~~~l--~gh~~~v~sv~fspdg~~laS~s-D~tIklW 254 (389)
++. ........+++. +.+++|.-. +..++|..-|+....+.... ..+...+.++++. ++.+..+-. ++.|.-.
T Consensus 157 ~l~~~~~~~p~gl~iD-~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~ 234 (266)
T d1ijqa1 157 SLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (266)
T ss_dssp EEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cccccccceeeEEEee-ccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEE
Confidence 554 222344667765 456667665 57889999999765554443 3333467788877 567777776 8888888
Q ss_pred eCC-CcEEEEeccCc
Q 016446 255 NFR-GELVTSFEDHL 268 (389)
Q Consensus 255 d~~-G~~l~tl~gh~ 268 (389)
+.. |+..+.+....
T Consensus 235 ~~~~g~~~~~~~~~~ 249 (266)
T d1ijqa1 235 NRLTGSDVNLLAENL 249 (266)
T ss_dssp ETTTCCCCEEEECSC
T ss_pred ECCCCcceEEEEcCC
Confidence 875 76666665443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.95 E-value=0.31 Score=48.04 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=52.9
Q ss_pred CCeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC-ceeEEEEEecCC
Q 016446 122 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFN 198 (389)
Q Consensus 122 D~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~-~~~~v~f~~~~~ 198 (389)
.|.+.=+|+.+|+.+.... ...+++=..+ .|.++.++ +.|++++-+|.+|||+|-+++-... .-..+.|. .+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~G---t~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~-~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG---TGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE-QDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETT
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEe---CCCCeEEEEECCCCcEeEEEECCCCccccCEEEE-ECC
Confidence 4678889999999887665 3344433334 56666555 4568999999999999999873222 22557775 556
Q ss_pred -CeEEE
Q 016446 199 -EKLLV 203 (389)
Q Consensus 199 -~~l~~ 203 (389)
+++++
T Consensus 541 ~qYv~i 546 (582)
T d1flga_ 541 EQYLGV 546 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 45554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.60 E-value=2.8 Score=38.76 Aligned_cols=197 Identities=13% Similarity=0.164 Sum_probs=112.4
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCeEEEEecCCcEEEEEEc------C-CceE-EEEecCCCCeeEEEEEcC-CCeEEEEE
Q 016446 111 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS------P-GIML-LIFNRSSSHVPLKILSIE-DGTVLKVF 181 (389)
Q Consensus 111 pdG~~Las~s~D~tiklWdl~~g~~l~tl~~~~V~~vafS------~-g~~l-a~~~~~s~d~tiklWd~~-tG~~l~tl 181 (389)
|+..++....-++=+.++|| +|+.+..+..+.++.|..- . ..-+ +++..+..-.+|.+|.+. .+..+..+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GGGCEEEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred cCccEEEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 34445554444555999998 6999988876555554433 2 2223 333322223478888874 33345544
Q ss_pred eec-------CCceeEEEEE-ecC-CCeEE-EEeCCCcEEEEECC---CC----eEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 182 YHL-------LHRNKKVDFI-EQF-NEKLL-VKQENENLQILDVR---NA----ELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 182 ~~~-------~~~~~~v~f~-~~~-~~~l~-~~s~D~tIklWd~~---tg----~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
... ...+..+++- .+. +...+ +...++.+..|.+. .| ++++++.- ...++.|++.++.+.|-
T Consensus 117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLY 195 (353)
T ss_dssp SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEE
Confidence 321 1235666662 133 33333 35688999888663 33 34555543 34799999999877776
Q ss_pred EEc-CCeEEEEeCC------CcEEEEecc-CcCCcCCCCeeEEEE--CCCCC-EEEEEecCCCcccccCCCCCeEEEEeC
Q 016446 245 TFR-NRTVAVWNFR------GELVTSFED-HLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSI 313 (389)
Q Consensus 245 S~s-D~tIklWd~~------G~~l~tl~g-h~~~~~~~~v~sv~f--SpdG~-~laS~s~D~~~~~~~~s~D~tIklWd~ 313 (389)
-+- +.-|...+.+ +.++-...+ |.... +..|++ .++|+ ||+..|.. |++..|+|.
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D----~EGlaiy~~~~~~GylivSsQG----------~n~f~vydr 261 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPD----IEGLTIYYAADGKGYLLASSQG----------NSSYAIYER 261 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSC----EEEEEEEECGGGCEEEEEEEGG----------GTEEEEEES
T ss_pred EecCccceEEEEeccCCCccceeeecccCccccCC----ccccEEEEcCCCCeEEEEEcCC----------CCeEEEEec
Confidence 665 6544333432 223333322 32221 566654 45655 66666653 589999998
Q ss_pred CC-CeEEEEec
Q 016446 314 LT-GKCLAKIN 323 (389)
Q Consensus 314 ~t-g~~l~tl~ 323 (389)
++ .+.+..++
T Consensus 262 ~~~~~~~g~F~ 272 (353)
T d1h6la_ 262 QGQNKYVADFQ 272 (353)
T ss_dssp STTCCEEEEEE
T ss_pred CCCccccceEE
Confidence 76 46776664
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=2.4 Score=36.91 Aligned_cols=217 Identities=16% Similarity=0.115 Sum_probs=130.7
Q ss_pred ceEEEEEEeeCCCEEEEEEEeecCCCcceeeeeeeEeEeccCCCCCcceeEeeecccCceeEEEecCCCeEEEEecCCCe
Q 016446 45 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 124 (389)
Q Consensus 45 ~~v~sv~~spdg~~l~s~s~~~~~d~~~l~~~~~~l~~i~~g~~~~~~~l~~~~~~~~~~~v~Fs~pdG~~Las~s~D~t 124 (389)
..+..|+|.+.++.|--+ +... +.|+.-++. |.. ...+. ......|..+|++...+++-.+-...+.
T Consensus 36 ~~~~~ld~D~~~~~iyws--d~~~-------~~I~~~~l~-g~~--~~~v~-~~~~~~p~~iAvD~~~~~lY~~d~~~~~ 102 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWT--DISE-------PSIGRASLH-GGE--PTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDR 102 (263)
T ss_dssp EEEEEEEEETTTTEEEEE--ETTT-------TEEEEEESS-SCC--CEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEEEeCCCEEEEE--ECCC-------CeEEEEEcc-cCC--cEEEE-EeccccccEEEEeccCCeEEEeccCCCE
Confidence 457788999888877652 1212 223222322 321 12222 2334567889998556666667777889
Q ss_pred EEEEeCCCCeEEEEec--CCcEEEEEEcC-CceEEEEecCCCCeeEEEE--EcCCCeEEEEEe-ecCCceeEEEEEecCC
Q 016446 125 YKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKIL--SIEDGTVLKVFY-HLLHRNKKVDFIEQFN 198 (389)
Q Consensus 125 iklWdl~~g~~l~tl~--~~~V~~vafS~-g~~la~~~~~s~d~tiklW--d~~tG~~l~tl~-~~~~~~~~v~f~~~~~ 198 (389)
|.+-++....+...+. -...+++++.| .++|.-+..+. ...+|+ ++ +|.....+. .....-..+++. +.+
T Consensus 103 I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~-dG~~~~~i~~~~~~~P~glaiD-~~~ 178 (263)
T d1npea_ 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHM-DGTNRRILAQDNLGLPNGLTFD-AFS 178 (263)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--SSCEEEEEET-TSCCCEEEECTTCSCEEEEEEE-TTT
T ss_pred EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC--CCcEEEEecC-CCCCceeeeeecccccceEEEe-ecC
Confidence 9999985444322223 25789999985 66665554332 233455 43 344444443 112333567775 446
Q ss_pred CeEEEE-eCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-CCeEEEEeCC-CcEEEEeccCcCCcCCCC
Q 016446 199 EKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 275 (389)
Q Consensus 199 ~~l~~~-s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D~tIklWd~~-G~~l~tl~gh~~~~~~~~ 275 (389)
++|.-. ...++|..-|+..+.+...+.+- ..+.++++. ++++..+-. .++|.--|.. |+.++++..+...-
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~---- 252 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR---- 252 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCC----
Confidence 667555 57889999999766665555553 356788885 677777876 8899888996 88777664333221
Q ss_pred eeEEEECCC
Q 016446 276 TNNIYITSD 284 (389)
Q Consensus 276 v~sv~fSpd 284 (389)
..+|++-|+
T Consensus 253 ~~gi~v~~~ 261 (263)
T d1npea_ 253 LYGITIALS 261 (263)
T ss_dssp CCCEEEECS
T ss_pred cceEEEeCC
Confidence 356766665
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.19 E-value=3.8 Score=39.14 Aligned_cols=178 Identities=10% Similarity=0.040 Sum_probs=111.3
Q ss_pred EecCCCeEEEEeCCCCeEEEEec--------C----C-----------------------------cE--EEEEEcC---
Q 016446 118 YSAQDSIYKVFDLKNYTMLYSIS--------D----K-----------------------------HV--QEIKISP--- 151 (389)
Q Consensus 118 s~s~D~tiklWdl~~g~~l~tl~--------~----~-----------------------------~V--~~vafS~--- 151 (389)
||++.|.|+|.-+-+++++..+. + + .. ..+.|.+
T Consensus 18 SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdGty 97 (459)
T d1fwxa2 18 SSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKY 97 (459)
T ss_dssp CCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETTEE
T ss_pred eCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCCcc
Confidence 56788888888888888776652 0 0 00 1445554
Q ss_pred -CceEEEEecCCCCeeEEEEEcCCCeEEEEEeec-CCceeEEEEE-ecCCCeEEEEeCC------------------CcE
Q 016446 152 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKKVDFI-EQFNEKLLVKQEN------------------ENL 210 (389)
Q Consensus 152 -g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~-~~~~~~v~f~-~~~~~~l~~~s~D------------------~tI 210 (389)
|++|.+.. ..+..|-.-|+.+-+|.+..+.- ......+... .|.-+++++.+++ +++
T Consensus 98 DGrylFVND--kan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 98 DGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ceeEEEEEc--CCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 78888774 44578989999999997755421 1122222221 1223667665542 346
Q ss_pred EEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEEc-C--------------------------------------CeE
Q 016446 211 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N--------------------------------------RTV 251 (389)
Q Consensus 211 klWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~s-D--------------------------------------~tI 251 (389)
-..|.++.+......-- .....++++|||+++.+.+ + +-+
T Consensus 176 t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 77899998875443211 2456789999999988875 3 122
Q ss_pred EEEeCC---C-cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCC
Q 016446 252 AVWNFR---G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 314 (389)
Q Consensus 252 klWd~~---G-~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~ 314 (389)
++=|.. + ..++++.-...+ ..|.+||||+|++.++.- +.++-+.|++
T Consensus 255 ~VVD~~~~~~~~v~~yIPVpKsP------HGV~vSPDGKyi~VaGKL----------s~tVSViD~~ 305 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIPIANNP------HGCNMAPDKKHLCVAGKL----------SPTVTVLDVT 305 (459)
T ss_dssp EEEECSGG--CSSEEEEEEESSC------CCEEECTTSSEEEEECTT----------SSBEEEEEGG
T ss_pred eeecccccCCcceeEEEecCCCC------CceEECCCCCEEEEeCCc----------CCcEEEEEeh
Confidence 333432 1 233333333333 478999999999998764 6899999975
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.17 E-value=3.2 Score=38.31 Aligned_cols=243 Identities=13% Similarity=0.118 Sum_probs=122.0
Q ss_pred ccEEE-EEecCc----eEEEEecccceeeeeeecCCcceEEEEEEeeCCCEEEEEEEeecCCC------cceeeeeeeEe
Q 016446 13 RDIVF-ALAHSG----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF------SSLKCRSTKIE 81 (389)
Q Consensus 13 ~~~~a-~~~~~g----tiklW~~~tg~~l~tl~~~~~~~v~sv~~spdg~~l~s~s~~~~~d~------~~l~~~~~~l~ 81 (389)
++++| +.+.+| ++++.|++||+.+..--. . ....+++|.+|++.|.-+..+..+.. .+..-+.+.++
T Consensus 136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h 213 (430)
T d1qfma1 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (430)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCEEEEEeccccCchheeEEeccCcceecccccc-c-ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence 66666 444454 799999999998753211 1 12257899999999887543221100 12222445455
Q ss_pred EeccCCCCCcceeEee-ecccCceeEEEecCCCeEEEEe---cCCCeEEEEeC--CCCe--------EEEEecC-CcEEE
Q 016446 82 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDL--KNYT--------MLYSISD-KHVQE 146 (389)
Q Consensus 82 ~i~~g~~~~~~~l~~~-~~~~~~~~v~Fs~pdG~~Las~---s~D~tiklWdl--~~g~--------~l~tl~~-~~V~~ 146 (389)
.+-++.. ....+|.. +...+...+..+ +||++|... ..+.+.++|-+ .... ....... .....
T Consensus 214 ~lgt~~~-~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (430)
T d1qfma1 214 VLGTDQS-EDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD 291 (430)
T ss_dssp ETTSCGG-GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred ECCCCcc-ccccccccccCCceEEeeecc-CCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE
Confidence 4433321 11235541 122233456776 899987532 34556666643 2211 0111221 22222
Q ss_pred EEEc-CCceEEEEecCCCCeeEEEEEcCCCeE--EEEE-eecCCceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCCe
Q 016446 147 IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV--LKVF-YHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAE 219 (389)
Q Consensus 147 vafS-~g~~la~~~~~s~d~tiklWd~~tG~~--l~tl-~~~~~~~~~v~f~~~~~~~l~~~s-~D--~tIklWd~~tg~ 219 (389)
.... .+..++.+..+.....+-.-++..... ..++ ..+...+..-.+. ..++.|+... .| ..|++++..+++
T Consensus 292 ~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~-~~~~~lvl~~~~~~~~~l~v~~~~~~~ 370 (430)
T d1qfma1 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGA 370 (430)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEE-EECCEEEEEEEcCCEeEEEEEECCCCc
Confidence 2333 333444443333333343344443221 1222 2222223322332 3456676654 55 458889999988
Q ss_pred EEEEcccCCCceEEEEEcCCCcE-EEEE-c---CCeEEEEeCC-CcE
Q 016446 220 LMEVSRTEFMTPSAFIFLYENQL-FLTF-R---NRTVAVWNFR-GEL 260 (389)
Q Consensus 220 ~~~~l~gh~~~v~sv~fspdg~~-laS~-s---D~tIklWd~~-G~~ 260 (389)
....+......+..+...++... ..+. | =.++--+|+. |++
T Consensus 371 ~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 371 LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 87776555566666655555543 3332 2 3677778885 653
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.00 E-value=4.5 Score=39.52 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=40.3
Q ss_pred CeEEEEeCC-CcEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEecCC
Q 016446 249 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 325 (389)
Q Consensus 249 ~tIklWd~~-G~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl~gH 325 (389)
|.|.-||+. |+++-...- ..+ .++=.++-.|.++..|+. ||.++-.|..|||.|..++--
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~-----~~gg~lsTagglVF~G~~-----------Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFA-----VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSC-----CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCceecccCC-CCC-----CccceeEecCCEEEEECC-----------CCeEEEEECCCCcEeeEEECC
Confidence 567888885 887654331 111 122233446777777765 599999999999999887543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.54 E-value=3.5 Score=37.38 Aligned_cols=78 Identities=10% Similarity=-0.010 Sum_probs=44.6
Q ss_pred cEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEEEE-c-CCeEEEEeCC--CcEEEEeccCcCCcCCCCeeEEEECC-
Q 016446 209 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS- 283 (389)
Q Consensus 209 tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~laS~-s-D~tIklWd~~--G~~l~tl~gh~~~~~~~~v~sv~fSp- 283 (389)
+..+|....+++... ...-...+-|+++||+++|.-+ . .+.|+.++++ +++.....-+... ..-.+.+.+
T Consensus 187 ~g~v~~~~~~~~~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~----~pDNi~~d~~ 261 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT----LVDNISVDPV 261 (340)
T ss_dssp CEEEEEECSSCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS----EEEEEEECTT
T ss_pred ceeEEEEcCCceEEE-cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC----CCCccEEecC
Confidence 334444444444332 2334578999999999877666 5 8899999986 3332111111111 134677876
Q ss_pred CCCEEEEE
Q 016446 284 DQDLIISY 291 (389)
Q Consensus 284 dG~~laS~ 291 (389)
+|.+.+.+
T Consensus 262 ~g~lwva~ 269 (340)
T d1v04a_ 262 TGDLWVGC 269 (340)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEEE
Confidence 56666554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=91.14 E-value=2 Score=42.26 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=51.4
Q ss_pred CeEEEEeCCCCeEEEEec-CCcEEEEEEc-CCceEEEEecCCCCeeEEEEEcCCCeEEEEEeecCC-ceeEEEEEecCC-
Q 016446 123 SIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFN- 198 (389)
Q Consensus 123 ~tiklWdl~~g~~l~tl~-~~~V~~vafS-~g~~la~~~~~s~d~tiklWd~~tG~~l~tl~~~~~-~~~~v~f~~~~~- 198 (389)
+.+.-||+.+|+.+.... ...+++=.++ .|.++.++ ..|+.++-+|.+||+.|-++.--.+ .-..+.|. .+|
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G---~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~-~dGk 528 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYG---TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT-HKGT 528 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEE---CCCCeEEEEECCCCcEeeEEECCCCcccCCeEEE-ECCE
Confidence 678899999999876543 3333332334 56666555 4578999999999999999873222 22667775 556
Q ss_pred CeEEE
Q 016446 199 EKLLV 203 (389)
Q Consensus 199 ~~l~~ 203 (389)
+++++
T Consensus 529 QYvav 533 (596)
T d1w6sa_ 529 QYVAI 533 (596)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.38 E-value=7.9 Score=35.49 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=103.4
Q ss_pred EEEEEecCceEEEEecccceeeeeeecCCcceEEEEEEee----CCC--EEEEEEEeecCCCcceeeeeeeEeEec-c-C
Q 016446 15 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK----NND--SLITVSVYASDNFSSLKCRSTKIEYIR-R-G 86 (389)
Q Consensus 15 ~~a~~~~~gtiklW~~~tg~~l~tl~~~~~~~v~sv~~sp----dg~--~l~s~s~~~~~d~~~l~~~~~~l~~i~-~-g 86 (389)
+|+...+.+=+.++|++ |+.|+.++.+ .++.|..-. +++ .|+.+|...... .++.+|.+. . +
T Consensus 42 lI~gTdK~~Gl~vYdL~-G~~l~~~~~G---r~NNVDvr~~~~l~~~~~di~vasnR~~~~------~~l~~~~id~~~~ 111 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLE-GKMLHSYHTG---KLNNVDIRYDFPLNGKKVDIAAASNRSEGK------NTIEIYAIDGKNG 111 (353)
T ss_dssp EEEEEETTSCCEEEETT-CCEEEECCSS---CEEEEEEEEEEEETTEEEEEEEEEECCTTT------CEEEEEEEETTTT
T ss_pred EEEEEcCcCCEEEEcCC-CcEEEecccC---CcCccccccccccCCcceEEEEEeCCcCcc------eeEEEEEecCccc
Confidence 55555666669999995 9999998753 445444332 333 455554321111 134556552 1 1
Q ss_pred CCC----CcceeEeeecccCceeEEE--ecCCCeE-EEEecCCCeEEEEeC---CCC----eEEEEec-CCcEEEEEEc-
Q 016446 87 KPD----SGFALFESESLKWPGFVEF--DDVNGKV-LTYSAQDSIYKVFDL---KNY----TMLYSIS-DKHVQEIKIS- 150 (389)
Q Consensus 87 ~~~----~~~~l~~~~~~~~~~~v~F--s~pdG~~-Las~s~D~tiklWdl---~~g----~~l~tl~-~~~V~~vafS- 150 (389)
.+. ...+.+ .....+..+++ ++.+|++ +.....++.+..|.+ .++ ++++++. ...+..|++.
T Consensus 112 ~l~~~~~~~~p~~--~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd 189 (353)
T d1h6la_ 112 TLQSITDPNRPIA--SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD 189 (353)
T ss_dssp EEEECSCSSSCEE--CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred ccccccccccccc--cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence 110 001111 12234566777 5445754 455567888888876 334 3556666 5789999999
Q ss_pred CCceEEEEecCCCCeeEEEEEc--C-----CCeEEEEEee--cCCceeEEEEE-ecC-CCeEEEE-eCCCcEEEEECCC
Q 016446 151 PGIMLLIFNRSSSHVPLKILSI--E-----DGTVLKVFYH--LLHRNKKVDFI-EQF-NEKLLVK-QENENLQILDVRN 217 (389)
Q Consensus 151 ~g~~la~~~~~s~d~tiklWd~--~-----tG~~l~tl~~--~~~~~~~v~f~-~~~-~~~l~~~-s~D~tIklWd~~t 217 (389)
..++|.++..+ +.+|.. . .++.+....+ ...-+..|+.- ..+ .++|+++ +.|.+..|+|.++
T Consensus 190 e~~~LyisEE~-----~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 190 EYGSLYIAEED-----EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp TTTEEEEEETT-----TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCCcEEEecCc-----cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 47788777543 345632 2 2333333221 22344555543 223 3466665 5899999999975
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.40 E-value=14 Score=33.36 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=95.2
Q ss_pred eeEEEEEcCCCeEEEEEeecCCceeEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEEcccCCCceEEEEEcCCCcEEE
Q 016446 165 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 244 (389)
Q Consensus 165 ~tiklWd~~tG~~l~tl~~~~~~~~~v~f~~~~~~~l~~~s~D~tIklWd~~tg~~~~~l~gh~~~v~sv~fspdg~~la 244 (389)
.++-+-|+.++.....-+ ...+-|...|....||..+ ..+++++|+++.+.++...=.+.-|..= |-.+ +.|+
T Consensus 45 ~~VvIidl~n~~~~~Rrp----i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWk-Wis~-~~L~ 117 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWK-WISL-NTVA 117 (327)
T ss_dssp EEEEEEETTSTTSCEEEE----CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEE-ESSS-SEEE
T ss_pred ceEEEEECCCCCcceecc----cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEE-ecCC-CEEE
Confidence 356667776544221111 0112222224344444455 6799999999999998765444433322 3222 3455
Q ss_pred EEcCCeEEEEeCCC--cEEEEeccCcCCcCCCCeeEEEECCCCCEEEEEecCCCcccccCCCCCeEEEEeCCCCeEEEEe
Q 016446 245 TFRNRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 322 (389)
Q Consensus 245 S~sD~tIklWd~~G--~~l~tl~gh~~~~~~~~v~sv~fSpdG~~laS~s~D~~~~~~~~s~D~tIklWd~~tg~~l~tl 322 (389)
=-.+..|--|+++| +..+-++-|... .++.|-.-..+||+++++-.+-... -++-.|.+-|+.++ .+.-+.|
T Consensus 118 lVT~taVYHW~~~g~s~P~k~fdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~----~~~i~G~mQLYS~e-r~~sQ~i 191 (327)
T d1utca2 118 LVTDNAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQ----QNRVVGAMQLYSVD-RKVSQPI 191 (327)
T ss_dssp EECSSEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEEEE----TTEEEEEEEEEETT-TTEEEEE
T ss_pred EEcCCceEEEcccCCCCchhhhhhcccc-cCceEEEEEECCCCCEEEEEeEecC----CCceeEEEEEEEec-cCcCccc
Confidence 55688899999975 578888888875 4677888899999999886653110 01223789999976 5567889
Q ss_pred cCCCC
Q 016446 323 NATNC 327 (389)
Q Consensus 323 ~gH~~ 327 (389)
.||..
T Consensus 192 eGhaa 196 (327)
T d1utca2 192 EGHAA 196 (327)
T ss_dssp CCSEE
T ss_pred cceee
Confidence 99973
|
| >d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 domain: Glucosylceramidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.08 E-value=5.2 Score=32.11 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=33.2
Q ss_pred ceeEEEecCCCeEEEEe----cCCCeEEEEeCCCCeEEEEecCCcEEEEEE
Q 016446 103 PGFVEFDDVNGKVLTYS----AQDSIYKVFDLKNYTMLYSISDKHVQEIKI 149 (389)
Q Consensus 103 ~~~v~Fs~pdG~~Las~----s~D~tiklWdl~~g~~l~tl~~~~V~~vaf 149 (389)
+..+||-.|||++++-. ..+..+.|++...|..-.+++.+.|..+.+
T Consensus 90 L~~vAF~nPDgs~vlVv~N~s~~~~~~~i~~~~~~~~~~~lpa~Si~T~vw 140 (143)
T d2nt0a1 90 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLW 140 (143)
T ss_dssp EEEEEEECTTSCEEEEEEECSSSCEEEEEEETTTEEEEEEECTTEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEEeCCCCCeEEEEEeCCCCEEEEEeCCCEEEEEEE
Confidence 45699988999986643 456788888876666667777666655544
|