Citrus Sinensis ID: 016455

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLNDKTTGSSIP
Secondary Structure (PSIPRED)
cHHHHHHHHccccHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccHHHccHHHHccccccEEccccccccHHHHHHccEEEEccccccHHHHHHHHcHHHHHHHHHHHccHHHHHcccccccHHHHHHHcccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccHHHHHEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHccccccccccc
Coil and Loop (DISEMBL)
MELARFLIrrdtsweitdsfqdqskpkihryganpnassvdqkgigessandnaetplflATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKidnggntllhmtgikrsdyvpekmegpaLVLQEELLWYERVeevsiphfrnhrnnmgftpeELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAytvpggasvgtgypillhhpffaTFAVSNVLSLTFALAAGFTflsilsspyrlqdfkqslpnkltlgFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKfcsktglpvpqcFISLLKRIFCFskclndkttgssip
Flexible Loop (DISEMBL)
melarflirrdtsweitdsfqdqskpkihryganpnassvdQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKidnggntllhmtgikrsdyvpeKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSkclndkttgssip
Low Complexity Region (SEG)
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLNDKTTGSSIP
Disordered region (IsUnstruct)
*****FLIRR***W******************************************PLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLN*********
Disordered Region (DISOPRED)
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGAN******************NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRI*****************
Disordered Region (DISEMBL)
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLND********
Disordered Region (DISPRO)
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLND********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKRIFCFSKCLNDKTTGSSIP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.737	0.486	0.255	1e-15
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.730	0.533	0.228	5e-08
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.660	0.490	0.231	5e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 57/344 (16%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV 112
           N +  L LA + G +E++K + +  PQ    ID +G+  LH+A+K +  E+ +L++  + 
Sbjct: 231 NNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDAD- 289

Query: 113 PMRRLVRKIDNGGNTLLHM-TGIKRSDYVPEKMEGP-------------------ALVLQ 152
           P   +V + D   NT LH+ T  KR++ V   +  P                    L L 
Sbjct: 290 PA--IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLS 347

Query: 153 EELLWYE---------RVEEVSIP--HFRNH----RNNMGFTPEELFATANN------EL 191
           EE  + +         R  E++ P    R+     +N++    E+   T  N      EL
Sbjct: 348 EESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKEL 407

Query: 192 RTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNV 251
           R   +E + +  +    VA+   TVAF A +TVPGG +   G  +++    F  F + N 
Sbjct: 408 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDN-NDGSAVVVGRASFKIFFIFNA 466

Query: 252 LSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMI 311
           L+L  +LA     ++++    + +     + NKL      ++L++   +VAF A+  +++
Sbjct: 467 LALFTSLAVVVVQITLVRGETKAEKRVVEVINKL------MWLASMCTSVAFLASSYIVV 520

Query: 312 KNKEHW-AKILLYTCSIIPVGIF-TLSYFSNYVTKSI-ARSCKK 352
             K  W A+++     +I  G+  T++Y   YV KS   RS +K
Sbjct: 521 GRKNEWAAELVTVVGGVIMAGVLGTMTY---YVVKSKRTRSMRK 561

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 133/346 (38%), Gaps = 62/346 (17%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV 112
           N +T L  A + G + IVK +       V   D +G+  LH+A+K R LE+ E ++Q + 
Sbjct: 161 NGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADY 220

Query: 113 PMRRLVRKIDNGGNTLLHMTGIKRSDYVP--------------EKMEGPALVLQEELLWY 158
               ++ + D  GNT LH+   K    +                  +  A+ L ++L + 
Sbjct: 221 T---ILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYS 277

Query: 159 ERVEEVSIPHFRNHRNNMGFTPEELFATA-----------------------------NN 189
           E   E++         +  F   E  A A                               
Sbjct: 278 ESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAK 337

Query: 190 ELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPG-----GASVGTGYPILLHHPFFA 244
           ELR   +E +++T +    VA+   ++AF A + +PG     G+ VG     +     F 
Sbjct: 338 ELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQAN--IAGRTGFR 395

Query: 245 TFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTV-AF 303
            F + N  SL  +LA     +++++   R Q    S+ NK       L  +AC  T  AF
Sbjct: 396 VFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNK-------LMWAACACTFGAF 448

Query: 304 AATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARS 349
            A    ++     W  I + T    P+ + TL+    +V +   RS
Sbjct: 449 LAIAFAVVGKGNSWMAITI-TLLGAPILVGTLASMCYFVFRQRFRS 493

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 63/320 (19%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
           A  N +T L  A ++G   IVK++       V  +D +G+  LH+A+K +  EI +++++
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 110 MEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYVP-------------EKMEGPALVLQEEL 155
            +     L+   DN GNT LH+   K R++ V               K    AL + E+ 
Sbjct: 215 AD---GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKT 271

Query: 156 LWYERV---EEVSIPHFRNHRNNMGFTP-------EELFATANNELRTQ----------- 194
             +E V   +++ + + R+ +      P       +E  +   +E+ TQ           
Sbjct: 272 GLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREI 331

Query: 195 ----------SKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGG-----ASVGTGYPI--- 236
                       E L +  +    VAI + TVAF A + VPG        V  GY +   
Sbjct: 332 QGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEA 391

Query: 237 -LLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLS 295
                P F  F V +  +L  +LA      S++    R +    ++ NKL      ++++
Sbjct: 392 RAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKL------MWMA 445

Query: 296 ACLMTVAFAATILLMIKNKE 315
             +++VAF +   +++  KE
Sbjct: 446 CIMISVAFVSLSFVVVGEKE 465

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
224115944	579	predicted protein [Populus trichocarpa]	0.876	0.588	0.625	1e-120
224115932	581	predicted protein [Populus trichocarpa]	0.822	0.550	0.625	1e-115
224115940	581	predicted protein [Populus trichocarpa]	0.822	0.550	0.621	1e-114
224115926	370	predicted protein [Populus trichocarpa]	0.825	0.867	0.584	1e-104
224115930	551	predicted protein [Populus trichocarpa]	0.830	0.586	0.568	1e-104
359496761	490	PREDICTED: ankyrin repeat-containing pro	0.886	0.704	0.496	1e-102
147841570	636	hypothetical protein VITISV_039462 [Viti	0.886	0.542	0.494	1e-101
359496086	1514	PREDICTED: uncharacterized protein LOC10	0.760	0.195	0.573	1e-94
359496759	568	PREDICTED: uncharacterized protein LOC10	0.879	0.602	0.480	9e-94
359497521	512	PREDICTED: ankyrin repeat-containing pro	0.863	0.656	0.515	1e-93

>gi|224115944|ref|XP_002317167.1| predicted protein [Populus trichocarpa] gi|222860232|gb|EEE97779.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 256/344 (74%), Gaps = 3/344 (0%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYG--ANPNASSVDQKGIGESSANDNAETPL 58
           +ELA+FL+R+DTSWE+T S  DQSKPKIH+YG         V              ETPL
Sbjct: 196 VELAKFLVRKDTSWELTYSSIDQSKPKIHKYGERGGQERQEVHLSNKILDKEESLGETPL 255

Query: 59  FLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLV 118
            LATKSGC+EIV+EI  +YPQAVEHIDDEGRN+LHVAIKYRQ +IFELV  M+VPM+RL 
Sbjct: 256 ILATKSGCVEIVEEILKLYPQAVEHIDDEGRNVLHVAIKYRQRKIFELVKGMDVPMKRLT 315

Query: 119 RKIDNGGNTLLHMTGIKRSDYVP-EKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMG 177
           RKID  GN++LH  G KR D+V  EKMEGPA +LQEELLW+ERV+EV+  HF NH+NNM 
Sbjct: 316 RKIDGDGNSILHTVGRKRKDFVSDEKMEGPAFLLQEELLWFERVKEVTPSHFLNHQNNMK 375

Query: 178 FTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPIL 237
            T E  F TAN+ELR  +KEWLK TA+ C  VA+ + TVAF AAYTVPGG +  TG P+L
Sbjct: 376 LTAEGYFITANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVL 435

Query: 238 LHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSAC 297
           ++ PFF  F V++VLSLTFAL +  TFLSIL+SP+R +DFK +LPNKL +GFTFLFLS  
Sbjct: 436 VNKPFFVVFTVTDVLSLTFALTSVVTFLSILTSPFRFKDFKHTLPNKLMVGFTFLFLSVA 495

Query: 298 LMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNY 341
           +M VAF ATI+LMI +KE W KI LY  S IPVGIF LSYF  Y
Sbjct: 496 MMMVAFGATIILMIYSKESWTKITLYAVSFIPVGIFALSYFPLY 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115932|ref|XP_002317164.1| predicted protein [Populus trichocarpa] gi|222860229|gb|EEE97776.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/320 (62%), Positives = 244/320 (76%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFL 60
           +ELA+ L R DTSWE+T S  DQSKPKIHRYG       +          +D  ETPL L
Sbjct: 246 VELAKLLSRNDTSWEVTYSSIDQSKPKIHRYGEIGGQEGMSLAARIPERMDDVGETPLIL 305

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK 120
           ATKSG +EIV+EI  +YPQAVEH+DDEGRN+LHVAIKYR+L+IFELV +MEVPM+RLVRK
Sbjct: 306 ATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMKRLVRK 365

Query: 121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
           IDN GN++LH  GIKR D+V EKMEGPA +LQEELLW+ERVE+V+ PHF +H N+   + 
Sbjct: 366 IDNEGNSILHTVGIKRKDFVSEKMEGPAFLLQEELLWFERVEKVTPPHFISHHNSQNLSA 425

Query: 181 EELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHH 240
           E LF TAN+ELR+ +KEW+K TA+    VA+ + TVAF AAYTVPGG +  TG P+L++ 
Sbjct: 426 ECLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNK 485

Query: 241 PFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMT 300
           PFF  F VS+VLSLTFAL +  TFLSILSSP+R +DFK +LPNKL  GFTFLFLS  +M 
Sbjct: 486 PFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLSVAMMM 545

Query: 301 VAFAATILLMIKNKEHWAKI 320
           VAF +TI L I NKE+WAK+
Sbjct: 546 VAFGSTIFLTIYNKENWAKV 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115940|ref|XP_002317166.1| predicted protein [Populus trichocarpa] gi|222860231|gb|EEE97778.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/320 (62%), Positives = 244/320 (76%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFL 60
           +ELA+ L R DTSWE+T S  DQSKPKIHRYG       +          +D  ETPL L
Sbjct: 246 VELAKLLSRTDTSWEVTYSSIDQSKPKIHRYGEIGGQEGMSLAARIPERMDDVGETPLIL 305

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK 120
           ATKSG +EIV+EI  +YPQAVEH+DDEGRN+LHVAIKYR+L+IFELV +MEVPM+RLVRK
Sbjct: 306 ATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMKRLVRK 365

Query: 121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
           IDN GN++LH  GIKR D+V EK+EGPA +LQEELLW+ERVE+V+ PHF +H N+   + 
Sbjct: 366 IDNEGNSILHTVGIKRKDFVSEKIEGPAFLLQEELLWFERVEKVTPPHFISHHNSQNLSA 425

Query: 181 EELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHH 240
           E LF TAN+ELR+ +KEW+K TA+    VA+ + TVAF AAYTVPGG +  TG P+L++ 
Sbjct: 426 ECLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNK 485

Query: 241 PFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMT 300
           PFF  F VS+VLSLTFAL +  TFLSILSSP+R +DFK +LPNKL  GFTFLFLS  +M 
Sbjct: 486 PFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLSVAMMM 545

Query: 301 VAFAATILLMIKNKEHWAKI 320
           VAF +TI L I NKE+WAK+
Sbjct: 546 VAFGSTIFLTIYNKENWAKV 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115926|ref|XP_002317161.1| predicted protein [Populus trichocarpa] gi|222860226|gb|EEE97773.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/339 (58%), Positives = 231/339 (68%), Gaps = 18/339 (5%)

Query: 25  KPKIHRYG--ANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVE 82
           KPKIH+YG         V             AETPL LATKSGC+EIV+EI   YPQAVE
Sbjct: 2   KPKIHKYGEKGGQERQEVHLYNTIPDQMESRAETPLILATKSGCVEIVEEILKAYPQAVE 61

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP- 141
           HIDD+GRN+LHVAIKYRQL+IF+LV +MEVPM+RL RKID  GN++LH  G K  D V  
Sbjct: 62  HIDDDGRNVLHVAIKYRQLKIFKLVTRMEVPMKRLGRKIDKDGNSILHNVGKKSKDVVSD 121

Query: 142 EKMEGPALVLQEELLWYE---------------RVEEVSIPHFRNHRNNMGFTPEELFAT 186
           EKMEGPA +LQEELLW+E               RVE+V+  HF+ HRNN   T E  F T
Sbjct: 122 EKMEGPAFLLQEELLWFEFFERYVLFVIHVRTQRVEKVTPSHFQGHRNNKMLTAEGFFFT 181

Query: 187 ANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATF 246
           AN+ELR  +KEWLK TA+ C  VA+ + TVAF AAYTVPGG +  TG P+L++ PFF  F
Sbjct: 182 ANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNKPFFVVF 241

Query: 247 AVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAAT 306
            V++VLSLTFAL A  TFLSILSSP+R +DFK  LPNKL +GFTFLF S  +M VAF AT
Sbjct: 242 TVADVLSLTFALTAVVTFLSILSSPFRFKDFKHILPNKLMIGFTFLFFSVAMMMVAFGAT 301

Query: 307 ILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKS 345
           ILLMI +KE W KI LY  S IPV I  L YF  Y + S
Sbjct: 302 ILLMIYSKESWEKITLYAVSFIPVSISALVYFPLYSSLS 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115930|ref|XP_002317163.1| predicted protein [Populus trichocarpa] gi|222860228|gb|EEE97775.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/348 (56%), Positives = 233/348 (66%), Gaps = 25/348 (7%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYG--ANPNASSVDQKGIGESSANDNAETPL 58
           +ELA+FL+R+DTSWE+T S  DQSKPKIH+YG         V              ETPL
Sbjct: 196 VELAKFLVRKDTSWELTYSSIDQSKPKIHKYGERGGQERQEVHLSNKILDKEESLGETPL 255

Query: 59  FLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLV 118
            LATKSGC+EIV+EI  +YPQAVEHIDDEGRN+LH                      RL 
Sbjct: 256 ILATKSGCVEIVEEILKLYPQAVEHIDDEGRNVLH----------------------RLT 293

Query: 119 RKIDNGGNTLLHMTGIKRSDYVP-EKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMG 177
           RKID  GN++LH  G KR D+V  EKMEGPA +LQEELLW+ERVE+V+  HF+ HRNN  
Sbjct: 294 RKIDGDGNSILHTVGRKRKDFVSDEKMEGPAFLLQEELLWFERVEKVTPSHFQGHRNNKM 353

Query: 178 FTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPIL 237
            T E  F TAN+ELR  +KEWLK TA+ C  VA+ + TVAF AAYTVPGG +  TG P+L
Sbjct: 354 LTAEGFFFTANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVL 413

Query: 238 LHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSAC 297
           ++ PFF  F V++VLSLTFAL A  TFLSILSSP+R +DFK  LPNKL +GFTFLF S  
Sbjct: 414 VNKPFFVVFTVADVLSLTFALTAVVTFLSILSSPFRFKDFKHILPNKLMIGFTFLFFSVA 473

Query: 298 LMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKS 345
           +M VAF ATILLMI +KE W KI LY  S IPV I  L YF  Y + S
Sbjct: 474 MMMVAFGATILLMIYSKESWEKITLYAVSFIPVSISALVYFPLYSSLS 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496761|ref|XP_003635326.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/391 (49%), Positives = 257/391 (65%), Gaps = 46/391 (11%)

Query: 2   ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGE------SSANDN-- 53
           +LA  LI  DTSW++T+  +D+SKP+ HRYG     +S+++KG+G       S  N+   
Sbjct: 54  KLAELLIPNDTSWKLTNPREDRSKPRTHRYGP---GTSLNEKGLGRDGLQSLSVGNEEKE 110

Query: 54  ---------------------------------AETPLFLATKSGCIEIVKEIFNVYPQA 80
                                             ETPLFLAT SG  EIV++I +V+PQA
Sbjct: 111 TPQGQSQESKKSSFTEREGGGEEEDYTTPIIKTGETPLFLATMSGIREIVEQILDVHPQA 170

Query: 81  VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYV 140
           +EHI++ G+NILHVA+KYRQ+EIF LVV  E+  RRLVRK D  GN++LHM G KRS Y+
Sbjct: 171 IEHINNRGKNILHVAVKYRQIEIFNLVVNNEMLARRLVRKTDEWGNSILHMVGKKRSGYI 230

Query: 141 PEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLK 200
            EK++ PAL LQ+ELL +ERV+EVS  +F  H N    TPEELFA   ++L   + +WLK
Sbjct: 231 AEKIQSPALQLQKELLLFERVKEVSKTYFIKHLNENKQTPEELFAKTYSDLHNSATDWLK 290

Query: 201 HTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAA 260
            T++ C  VA+ + TVAF AAYT+PGG +  TG P+LL  PFF  F +++V+SLTFAL +
Sbjct: 291 RTSENCTIVAVLIATVAFAAAYTIPGGPNQSTGLPLLLSQPFFVIFTLTDVISLTFALTS 350

Query: 261 GFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKI 320
             TFLSIL+S +RLQDFK SLP KL LGFTFL LS  +M VAFAATI+LMI+NKE W KI
Sbjct: 351 VVTFLSILTSSFRLQDFKNSLPQKLMLGFTFLILSVSMMMVAFAATIVLMIRNKERWTKI 410

Query: 321 LLYTCSIIPVGIFTLSYFSNYVTKSIARSCK 351
           +LY+ + +PV +F +SY   Y+  S+  +CK
Sbjct: 411 VLYSVAFLPVTLFAISYSPLYL--SLLEACK 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841570|emb|CAN77609.1| hypothetical protein VITISV_039462 [Vitis vinifera]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/392 (49%), Positives = 257/392 (65%), Gaps = 47/392 (11%)

Query: 2   ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGE------SSANDN-- 53
           +LA  LI  DTSW++T+  +D+SKP+ HRYG     +S+++KG+G       S  N+   
Sbjct: 199 KLAELLIPNDTSWKLTNPREDRSKPRTHRYGPR---TSLNEKGLGRDGLQSLSVGNEEKE 255

Query: 54  ----------------------------------AETPLFLATKSGCIEIVKEIFNVYPQ 79
                                              ETPLFLAT SG  EIV++I +V+PQ
Sbjct: 256 TPQGQSQESKKSSFTEREGGGGEEEDYTTPIIKTGETPLFLATMSGIREIVEQILDVHPQ 315

Query: 80  AVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY 139
           A+EHI++ G+NILHVA+KYRQ+EIF LVV  E+  RRLVRK D  GN++LHM G KRS Y
Sbjct: 316 AIEHINNRGKNILHVAVKYRQIEIFNLVVNNEMLARRLVRKTDEWGNSILHMVGKKRSGY 375

Query: 140 VPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWL 199
           + EK++ PAL LQ+ELL +ERV+EVS  +F  H N    TPEELFA   ++L   + +WL
Sbjct: 376 IAEKIQSPALQLQKELLLFERVKEVSKTYFIKHLNENKQTPEELFAKTYSDLHNSATDWL 435

Query: 200 KHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALA 259
           K T++ C  VA+ + TVAF AAYT+PGG +  TG P+LL  PFF  F +++V+SLTFAL 
Sbjct: 436 KRTSENCTIVAVLIATVAFAAAYTIPGGPNQSTGLPLLLSQPFFVIFTLTDVISLTFALT 495

Query: 260 AGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAK 319
           +  TFLSIL+S +RLQDFK SLP KL LGFTFL LS  +M VAFAATI+LMI+NKE W K
Sbjct: 496 SVVTFLSILTSSFRLQDFKNSLPQKLMLGFTFLILSVSMMMVAFAATIVLMIRNKERWTK 555

Query: 320 ILLYTCSIIPVGIFTLSYFSNYVTKSIARSCK 351
           I+LY+ + +PV +F +SY   Y+  S+  +CK
Sbjct: 556 IVLYSVAFLPVTLFAISYSPLYL--SLLEACK 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496086|ref|XP_003635148.1| PREDICTED: uncharacterized protein LOC100853163 [Vitis vinifera]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 221/298 (74%), Gaps = 2/298 (0%)

Query: 54  AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP 113
            ETPLFLAT SG  EIV++I +V+PQA+EHI++ G+NILHVA+KYRQ+EIF LVV  E+ 
Sbjct: 520 GETPLFLATMSGIREIVEQILDVHPQAIEHINNRGKNILHVAVKYRQIEIFNLVVNNEML 579

Query: 114 MRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHR 173
            RRLVRK D  GN++LHM G KRS Y+ EK++ PAL LQ+ELL +ERV+EVS  +F  H 
Sbjct: 580 ARRLVRKTDEWGNSILHMVGKKRSGYIAEKIQSPALQLQKELLLFERVKEVSKTYFIKHL 639

Query: 174 NNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTG 233
           N    TPEELFA   ++L   + +WLK T++ C  VA+ + TVAF AAYT+PGG +  TG
Sbjct: 640 NENKQTPEELFAKTYSDLHNSATDWLKRTSENCTIVAVLIATVAFAAAYTIPGGPNQSTG 699

Query: 234 YPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLF 293
            P+LL  PFF  F +++V+SLTFAL +  TFLSIL+S +RLQDFK SLP KL LGFTFL 
Sbjct: 700 LPLLLSQPFFVIFTLTDVISLTFALTSVVTFLSILTSSFRLQDFKNSLPQKLMLGFTFLI 759

Query: 294 LSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCK 351
           LS  +M VAFAATI+LMI+NKE W KI+LY+ + +PV +F +SY   Y+  S+  +CK
Sbjct: 760 LSVSMMMVAFAATIVLMIRNKERWTKIVLYSVAFLPVTLFAISYSPLYL--SLLEACK 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496759|ref|XP_003635325.1| PREDICTED: uncharacterized protein LOC100855237 [Vitis vinifera]

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 188/391 (48%), Positives = 246/391 (62%), Gaps = 49/391 (12%)

Query: 6   FLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKG--------------------- 44
            L RRDTS + T + Q++SKPK H Y  +P+  S D+KG                     
Sbjct: 137 MLARRDTSSKATKARQNRSKPKTHTY--SPSTPSSDEKGRRNASISLLSPGHEEKEGLTG 194

Query: 45  ------------------IGESSAND------NAETPLFLATKSGCIEIVKEIFNVYPQA 80
                             +  S  ND        E PLFLAT  G  EIVKEIF V+PQA
Sbjct: 195 RSQESSKSPFNESRGEGEVDGSPENDMTPIMRTGEIPLFLATWLGIQEIVKEIFAVHPQA 254

Query: 81  VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYV 140
            EHI+ +G+NILH AIK+RQ++IF LVV  E   R LVRK+D+ GN++LHM G KR+DYV
Sbjct: 255 FEHINCKGKNILHFAIKHRQIKIFILVVNNEFIARNLVRKLDDEGNSILHMVGKKRADYV 314

Query: 141 PEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLK 200
           PEK++ PAL LQ+EL+ +ERV+EVS  +F  H N    TPEELFA    +LR  + +WLK
Sbjct: 315 PEKIQSPALQLQKELILFERVKEVSADYFTKHLNEHKHTPEELFAETYTKLRKSATDWLK 374

Query: 201 HTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAA 260
            +++ C  VA+ + TVAF AAYT+PGG +  TG+P+LL+ PFF  F +S+ L+LTFAL +
Sbjct: 375 RSSENCTVVAVLIATVAFAAAYTIPGGPNQSTGFPLLLYQPFFMIFTLSDSLTLTFALTS 434

Query: 261 GFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKI 320
              FLSIL+  +RL+DFK SL  KL LGFTFL LS  +M VAFAATI+LMI NKE W KI
Sbjct: 435 VVAFLSILTFSFRLRDFKNSLIQKLMLGFTFLILSVSMMMVAFAATIVLMIHNKERWTKI 494

Query: 321 LLYTCSIIPVGIFTLSYFSNYVTKSIARSCK 351
           +LY+ + +PV +F +SY   Y+  S+  +CK
Sbjct: 495 VLYSVAFLPVTVFAISYSPLYL--SLLEACK 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497521|ref|XP_003635551.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/359 (51%), Positives = 235/359 (65%), Gaps = 23/359 (6%)

Query: 2   ELARFLIRRDTSWEITD-SFQDQSKPKIHRYGANPNASSVDQKGIGESSA---------- 50
           ELA  L+  DTSWE T+    D+    +   G + + SS ++  +  S A          
Sbjct: 86  ELASKLLESDTSWEATNPQAVDRGSISVQEKGGDSSVSSKEKAKVDPSIALQHPDEKKGK 145

Query: 51  ----------ND--NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY 98
                     N+  N ETPLFLAT SG  EIV EI   YPQA+EH +D+GRNILHVAI Y
Sbjct: 146 TSPEVNRTRFNNIRNKETPLFLATMSGIPEIVDEILKKYPQAIEHYNDQGRNILHVAINY 205

Query: 99  RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY 158
           RQ+EIF+ VV+ME+P RRL+R  D  GN++LHM G K   YV  K   PA+ LQEELL +
Sbjct: 206 RQIEIFDRVVKMEMPARRLLRATDAKGNSILHMVGKKGKRYVSRKSRSPAIQLQEELLLF 265

Query: 159 ERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAF 218
           ERV+E S  HF    N+   T +ELFA+   EL  ++KEWLK TA+ C  VA+ + TVAF
Sbjct: 266 ERVKEYSKSHFLKVFNHNNQTADELFASNYCELHEEAKEWLKRTAENCTIVAVLIATVAF 325

Query: 219 FAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFK 278
            AAYT+PGG +  TG P+LL  PFF  F +++V+SLT+AL +  TFLSIL+SP++LQDFK
Sbjct: 326 AAAYTIPGGPNQSTGIPLLLSQPFFVVFTLADVISLTYALTSVITFLSILTSPFQLQDFK 385

Query: 279 QSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSY 337
           +SL  KL LGFTFL LS  +M VAFAATI+LMI NKE W KI+LY+ + +PV IF LSY
Sbjct: 386 KSLLRKLMLGFTFLILSVSMMMVAFAATIILMIHNKERWTKIVLYSVAFLPVIIFALSY 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.714	0.801	0.301	2.5e-33
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.658	0.424	0.328	3.9e-33
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.755	0.439	0.284	4.3e-30
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.748	0.465	0.276	3.3e-29
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.719	0.487	0.290	1.8e-28
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.377	0.242	0.254	1.5e-13
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.732	0.483	0.253	4.2e-12
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.771	0.439	0.242	7.1e-10
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.647	0.372	0.246	3.2e-08
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.203	0.164	0.296	3.1e-07

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 87/289 (30%), Positives = 152/289 (52%)

Query:    58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL 117
             LF A +SG +E++  +   YP  +  +D + +++ H+A   R  +IF  + ++   ++ L
Sbjct:    35 LFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGA-IKDL 93

Query:   118 VR--KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPH-FRNHRN 174
             +   K     + LLH+          + + G AL +Q E+LWY+ V+E+ +P  +   +N
Sbjct:    94 IAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEI-VPRVYIKTKN 152

Query:   175 NMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGG----ASV 230
                    +LF   ++ LR + ++W+K TA  C+ V+  + TV F AA+T+PGG      +
Sbjct:   153 KKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDI 212

Query:   231 GT-GYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGF 289
              T G+P      +F  F +S+ ++L  ++ +   FLSIL+S Y    F+ +LP KL LG 
Sbjct:   213 KTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGL 272

Query:   290 TFLFLSACLMTVAFAATILLMIKNKEHWAKILL-YTCSIIPVGIFTLSY 337
               LF+S   M +AF AT++L+   +  W+ ILL Y  S   +    L +
Sbjct:   273 LALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.9e-33, P = 3.9e-33
 Identities = 85/259 (32%), Positives = 138/259 (53%)

Query:    58 LFLATKSGCIEIVKEIFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVVQMEVPMRR 116
             L  A KSG  +   EI     Q +  ++   GRN+  +A+++++ +IF L+  ++     
Sbjct:   298 LLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVT 357

Query:   117 LVRKIDNGGNTLLHMTG-IKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNN 175
             L+R  D G N +LH+ G +   D +  K+ G AL +Q E  W++ VE +        +N 
Sbjct:   358 LLRSYDKGNNNILHIAGRLSTPDQL-SKISGAALKMQRESQWFKEVESLVSEREVVQKNK 416

Query:   176 MGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYP 235
                TP ++F   +  LR + +EW+K+TA  C  VA  + TV F A +TVPGG    +G P
Sbjct:   417 DNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSP 476

Query:   236 ILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLS 295
             ++L+   F  F  ++ L+   +  +   FLSIL+S Y   DF  SLP K+ LG + LF+S
Sbjct:   477 LILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFIS 536

Query:   296 ACLMTVAFAATILLMIKNK 314
                M VAF  ++   +++K
Sbjct:   537 IASMLVAFITSLSASMRHK 555

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 4.3e-30, P = 4.3e-30
 Identities = 86/302 (28%), Positives = 146/302 (48%)

Query:    39 SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHV-AIK 97
             S +   +G    ++  +  L  A + G ++ + E+     + +        + L + A++
Sbjct:   344 SEETLALGLKERSETVDEALLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVE 403

Query:    98 YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW 157
             +RQ ++F L+  ++     L+   D  GN +LH+ G          + G  L LQ EL W
Sbjct:   404 FRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQW 463

Query:   158 YERVEEVSIPHFRNHR-NNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTV 216
             ++ VE ++ P     R N    TP E+F   +  LR ++++W+K TA  C  VA  + TV
Sbjct:   464 FKEVERIA-PEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTV 522

Query:   217 AFFAAYTVPGGASVGT-GYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQ 275
              F A +TVPGG    + G P  L    F  F VS+++S   +  +   FL IL++ Y   
Sbjct:   523 TFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFD 582

Query:   276 DFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHW--AKILLYTCSIIPVGIF 333
             DF   LP K+  G + LF+S   M +AF++ +  M+  +  W  A  +L+ C  +P  +F
Sbjct:   583 DFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFAC--LPALLF 640

Query:   334 TL 335
              L
Sbjct:   641 VL 642

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 3.3e-29, P = 3.3e-29
 Identities = 83/300 (27%), Positives = 145/300 (48%)

Query:    39 SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNIL-HVAIK 97
             S +   +G    +++ +  L  A + G ++ + E+        E +   G + L + A++
Sbjct:   305 SEETLALGLKERSESVDEALLFAVRYGNVDFLVEMIK---NNSELLWSTGTSTLFNTAVQ 361

Query:    98 YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW 157
              RQ ++F L+  +       +   D+ GN++LH+ G    +Y    +    L +Q EL W
Sbjct:   362 VRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQW 421

Query:   158 YERVEEVSIPHFRNHR-NNMGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTV 216
             ++ +E + +P   N R N    TP E+F   +  +R ++++W+K TA  C  VA  + TV
Sbjct:   422 FKEMERI-VPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTV 480

Query:   217 AFFAAYTVPGGASVGTG-YPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQ 275
              F A +TVPGG    +G  P   H   F  F VS+++S   A  +   FL IL++ Y   
Sbjct:   481 TFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFD 540

Query:   276 DFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTL 335
             DF  SLP  +  G + LF+S   M VAF++ +  +  +    A  + + C   P  +F +
Sbjct:   541 DFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDPWIVAPTIFFAC--FPALLFVM 598

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.8e-28, P = 1.8e-28
 Identities = 84/289 (29%), Positives = 142/289 (49%)

Query:    58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL 117
             LF A + G +EI+  +   +   +  +D+  R + HVA  YR   IF L+ ++   ++ L
Sbjct:   259 LFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELG-GIKDL 317

Query:   118 VR--KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNN 175
             +   K     +TLLH+          +   G AL +Q+ELLW++ V+E+    +   +N 
Sbjct:   318 IASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNT 377

Query:   176 MGFTPEELFATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGAS-----V 230
              G    ++F   +  LR + + W+K TA  C+  A  + TV F AA T+PGG        
Sbjct:   378 KGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKA 437

Query:   231 GT-GYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGF 289
              T G+P       F  F +S+ ++L  ++ +   FLSI +S Y  +DF+  LP KL  G 
Sbjct:   438 NTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGL 497

Query:   290 TFLFLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYF 338
             + LF+S   M +AF  +++L+   K   + +L+   + +    F   YF
Sbjct:   498 SALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYF 546

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query:   190 ELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFFATFAVS 249
             ELR   +  + +  +    VA+   TVAF A +TVPGG     G  +++H   F  F + 
Sbjct:   420 ELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGGDD-DHGVAVMVHATSFKIFFIF 478

Query:   250 NVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILL 309
             N ++L  +LA     ++++    + +     + NKL      ++L++   TVAF ++  +
Sbjct:   479 NAIALFTSLAVVVVQITLVRGETKTERRVVEVINKL------MWLASVCTTVAFISSSYI 532

Query:   310 MIKNKEHWAKILLYTCSIIPV-GIFTLSYFSNYVTKS 345
             ++  +  +A +++     + + GI  LS  + YV KS
Sbjct:   533 VVGRRNRYAAVVVTVIGTVTMTGI--LSIMTYYVVKS 567

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 78/308 (25%), Positives = 137/308 (44%)

Query:    55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM-EVP 113
             +T L +A K    E+VK + +  P  V   D      LHVA + ++ EI EL++ + +  
Sbjct:   267 QTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTN 326

Query:   114 MRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHR 173
                L R      +    +   + S Y+ E +     +   EL    R E  S       +
Sbjct:   327 ANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELN-QPRDELRST--VTQIK 383

Query:   174 NNMGFTPEELFATANN------ELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGG 227
             N++    E+   T  N      ELR   +E + +  +    VA+   TVAF A +TVPGG
Sbjct:   384 NDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG 443

Query:   228 ASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTL 287
              +   G  +++    F  F + N L+L  +LA     ++++    + +     + NKL  
Sbjct:   444 DN-NDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKL-- 500

Query:   288 GFTFLFLSACLMTVAFAATILLMIKNKEHWA-KILLYTCSIIPVGIF-TLSYFSNYVTKS 345
                 ++L++   +VAF A+  +++  K  WA +++     +I  G+  T++Y   YV KS
Sbjct:   501 ----MWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTY---YVVKS 553

Query:   346 I-ARSCKK 352
                RS +K
Sbjct:   554 KRTRSMRK 561

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 80/330 (24%), Positives = 142/330 (43%)

Query:    36 NASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVA 95
             N  +  +KG+     +D+   P+ LA + G I++VKEI    P +   ++ +G+N+LH+A
Sbjct:   322 NLLNRSRKGV--FVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIA 379

Query:    96 IKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPA-LVLQEE 154
              +  +  I   +   E  +  L  + D  GNT LH+  I        ++ G   L++Q  
Sbjct:   380 AESGKFRILRHLTAHE-QINHLANEKDVDGNTPLHLATIYWRPRAVRELGGKKNLLIQNN 438

Query:   155 --LLWYERVEEVSIPH--FRNHRNNMGFTPEELF---ATANNELRTQS---KEWLKHTAD 204
               L+  +  E    PH  FR     +             A+  ++T+    +   K   +
Sbjct:   439 NGLVALDIAESKLQPHYIFRERLTLLALVQLHFQNDPRCAHTMIQTRPIMPQGGNKDYIN 498

Query:   205 RCLAVAIFVGTVAFFAAYTVPGGASVGT---GYPILLHHPFFATFAVSNVLSL-TFALAA 260
               L VA  + TV F + +T+PGG    T   G   L+ +P    F + ++L+L T  LA 
Sbjct:   499 ALLVVAALITTVTFTSGFTIPGGFKDSTPNVGMANLITNPRLILFLIFDILALETSFLAV 558

Query:   261 GFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMIKNKEHWAKI 320
                 L+ L  P   Q       + + +    L+ +   MT+AF   +++   N   W   
Sbjct:   559 VSLILAQLGDPTLYQ-------SSVRVAMISLYFAMYFMTLAFFFVMVIAAGNVR-WLVY 610

Query:   321 LLYTCSIIPVGIFTLSYFSNYVTKSIARSC 350
             +++ C I    I TL+ FS ++   +   C
Sbjct:   611 VIF-CLIF--SILTLA-FSRFMPHLLLHYC 636

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 71/288 (24%), Positives = 126/288 (43%)

Query:    50 ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
             ++D+   P+ +A K G ++I+K I    P A+E +D E +N+LHVA K  ++E+ + +++
Sbjct:   346 SDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILR 405

Query:   110 M--EVPMRRLVRKIDNGGNTLLHM-------------TGIKRSDYVPEKMEG-PALVLQE 153
                +    +L+ + D  GNT LH+             T   R D      +G  AL + E
Sbjct:   406 CCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAE 465

Query:   154 ELL-----WYERVEEVSIPHFRNHRNNMGFTPEELFATANNELRTQSKEWLKHTADRCLA 208
             + +     ++ER+  +++      R      P+ + +T   +     K   K   +  L 
Sbjct:   466 KNMDSSYTFFERLTWMALISAGAPRG-----PKLILSTPVTQNSDGGK--YKDRVNTLLL 518

Query:   209 VAIFVGTVAFFAAYTVPGG--ASVGT-GYPILLHHPFFATFAVSNVLSLTFALAA--GFT 263
             VA  V T+ F A +T+PGG   SV   G   L     F  F V + L++  ++       
Sbjct:   519 VATLVATMTFTAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALI 578

Query:   264 FLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLMI 311
             +  +      ++ F  +LP    LG     +S   M   +AA   L+I
Sbjct:   579 WAQLGDLSLIMKAFNLALP---LLGLALTSMSIAFMAGTYAAVYGLLI 623

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 24/81 (29%), Positives = 46/81 (56%)

Query:    51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVVQ 109
             N++  TPL  A  S  I+I+K   +  P + + +       + H+A++++ L+ F+ + Q
Sbjct:    84 NNDGLTPLHCAAVSNSIKILKVFSHKTPSSFDILTQPHNETVFHLAVRHKNLKAFKFMAQ 143

Query:   110 MEVPMRRLVRKIDNGGNTLLH 130
              +V + +L+ K D  GNT+LH
Sbjct:   144 -KVHLEKLLYKPDKYGNTVLH 163

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
COG0392	322	COG0392, COG0392, Predicted integral membrane prot	7e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 43/118 (36%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 196 KEWLKHTADRCLAVAIFVGTVAFFAAYTVPGG-----ASVGTGYPILLHHP-FFATFAVS 249
            EWL+ T +  L VA  + TV F A +T PGG          G PIL   P  F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 250 NVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATI 307
           N ++   +L A    L I+ S  R       LP +L    T L+LS   + VAFAA  
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSR------RLP-RLLALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 51  NDNAETPLFLATKSGCIEIVKE-IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
           +++  TPL LA  +G +E+VK  + N     V   D++GR  LH+A K   LEI +L+++
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 110 MEVPMRRLVRKIDNGGNTLLHM 131
                   V   D  GNT LH+
Sbjct: 62  ----KGADVNARDKDGNTPLHL 79

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 17/102 (16%)

Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
             GA+ NA             +++  TPL LA K+G +EIVK +       V   D +G 
Sbjct: 28  ENGADVNA------------KDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGN 74

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
             LH+A +   L++ +L+++        V   D  G T LH+
Sbjct: 75  TPLHLAARNGNLDVVKLLLK----HGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
           T L LA ++G +EIVK +   +   V   D +G   LH+A +   LEI +L+++
Sbjct: 30  TALHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 2   ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVD---QKGIGESSANDNAETPL 58
           E+ + L+         D+        +H    N +   V    +KG   ++ + +  TPL
Sbjct: 21  EVVKLLLENGADVNAKDNDGRTP---LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPL 77

Query: 59  FLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
            LA ++G +++VK +   +   V   D +GR  LH+A K   LE+ +L++
Sbjct: 78  HLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function unknown]

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 22/198 (11%)

Query: 184 FATANNELRTQSKEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVGTGYPILLHHPFF 243
                  L+  +  WL         +  F+  +  +A  T+           + +    +
Sbjct: 40  LKEVLAALKGINLTWL---------LLAFLLYLLSYALLTLYDRT---ALKSLGVKLSLW 87

Query: 244 ATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFLFLSACLMTVAF 303
                S + +            S  +  YRL          ++    FL L+  L  +  
Sbjct: 88  KVALASFI-AYFLNNITPAALGSGPAVRYRLYSRLGLSVALVSRILAFLLLTFGLGLLLL 146

Query: 304 AATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYV---TKSIARSCKKFCSKTGLP 360
              ILL +  K     +LL T  +  + I  L   +  +        R  K    +  LP
Sbjct: 147 FLLILLFVPLKLAL-FLLLLTLLLRILLILLLLAAAILLILTAFLRRREFKIGRLRLRLP 205

Query: 361 VP-----QCFISLLKRIF 373
                  Q  +SL++ + 
Sbjct: 206 NRRGLLAQLLLSLVEWLA 223

Length = 322

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 58  LFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRN--ILHVAIKYRQLEIFELVVQMEVPM 114
           L LA K+G +E+VK +        +  D + G     LH+A +   LEI +L+++     
Sbjct: 1   LHLAAKNGNLELVKLLLE------KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD- 53

Query: 115 RRLVRKIDNGGNTLLHM 131
              V   D  GNT LH+
Sbjct: 54  ---VNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
             D++GR  LH+A     LE+ +L+++        V   DN G T LH+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHL 46

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 78  PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           P  +   D  G   LH+A KY  LE+ + +++  V +       D+ G T L +
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLR----DSDGLTALDL 55

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
PF13962	113	PGG: Domain of unknown function	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02874	434	ankyrin repeat protein; Provisional	99.89
PHA02791	284	ankyrin-like protein; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA02859	209	ankyrin repeat protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA02946	446	ankyin-like protein; Provisional	99.86
PHA02875	413	ankyrin repeat protein; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
PHA02989	494	ankyrin repeat protein; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.85
KOG0508	615	consensus Ankyrin repeat protein [General function	99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.84
PHA02795	437	ankyrin-like protein; Provisional	99.84
KOG0510	929	consensus Ankyrin repeat protein [General function	99.83
PHA02876	682	ankyrin repeat protein; Provisional	99.83
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.81
KOG0510	929	consensus Ankyrin repeat protein [General function	99.81
PHA02798	489	ankyrin-like protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02917	661	ankyrin-like protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.74
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.72
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.7
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.69
PHA02884	300	ankyrin repeat protein; Provisional	99.69
KOG0514	452	consensus Ankyrin repeat protein [General function	99.66
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.65
KOG0514	452	consensus Ankyrin repeat protein [General function	99.65
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
PHA02736	154	Viral ankyrin protein; Provisional	99.57
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.53
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.53
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.52
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.5
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.49
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.23
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.19
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.17
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.12
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.1
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.05
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.97
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.87
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.75
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.59
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.59
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
PF13606	30	Ank_3: Ankyrin repeat	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.54
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.52
PF13606	30	Ank_3: Ankyrin repeat	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0522	560	consensus Ankyrin repeat protein [General function	98.38
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.32
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.21
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.16
KOG2384	223	consensus Major histocompatibility complex protein	98.06
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.85
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.77
KOG0511	516	consensus Ankyrin repeat protein [General function	97.74
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.66
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.58
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.52
KOG2384	223	consensus Major histocompatibility complex protein	97.42
KOG0511	516	consensus Ankyrin repeat protein [General function	97.12
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.47
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.35
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.31
KOG2505	591	consensus Ankyrin repeat protein [General function	96.22
KOG2505	591	consensus Ankyrin repeat protein [General function	96.14
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.06

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=8.5e-33  Score=266.32  Aligned_cols=339  Identities=14%  Similarity=0.094  Sum_probs=191.0

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCC-CCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAND-NAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |.++.|++. |.++|..|+   .+.++||+|+.++.++   +|+++|+|+|+.+. -|.||||+|+++|+..+|++|+ +
T Consensus        58 ~~v~~lve~~g~~v~~~D~---~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl-q  133 (600)
T KOG0509|consen   58 ETVKELVESEGESVNNPDR---EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL-Q  133 (600)
T ss_pred             HHHHHHHhhcCcCCCCCCc---CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH-H
Confidence            456666666 677666665   4445566666666554   66777777776663 4677777777777777777777 6


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC------------
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM------------  144 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l------------  144 (389)
                      +|+|++.+|.+|.||+|+|++.++.-++-||+.++++    +|.+|++|+||||+|+.+++...+..+            
T Consensus       134 hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d----~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~  209 (600)
T KOG0509|consen  134 HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD----IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDD  209 (600)
T ss_pred             cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc----CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccc
Confidence            6777777777777777777777777777777777766    777777777777777766665522111            


Q ss_pred             --CChhHHhhHHHHHHHHHHhhc-chhhhhhccCCCCChHHHHhhhhhh--hHHhhHHHHHhhhchhHHHHHHHHHH---
Q 016455          145 --EGPALVLQEELLWYERVEEVS-IPHFRNHRNNMGFTPEELFATANNE--LRTQSKEWLKHTADRCLAVAIFVGTV---  216 (389)
Q Consensus       145 --~~~~l~l~~~~~~~~~v~~~~-~~~~~~~~n~~g~Tpl~la~~~~~~--~~~~~~~~~~~~~~s~~vVa~LiaTv---  216 (389)
                        +..+++....-...+.+.-+. .....+..|.+|+||+++|.+....  +..+..+......+-......+.+..   
T Consensus       210 ~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~~~~~~~~h~~~~~~~~~~~K~~~~~~~~~~~~f~  289 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQERKLVAALHHDVVERLGKVVKKWFLGSKLAALIFFI  289 (600)
T ss_pred             ccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHhhhHHHhhccHHHhhcccccchhhhhHHHHHHHHH
Confidence              112222221111111111000 1122467788899999999776111  00111111111111111111222222   


Q ss_pred             ----hhhhhccCCCCCCCCCCccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCccchhhhhhhhhhhHHHHHHHH
Q 016455          217 ----AFFAAYTVPGGASVGTGYPILLHHPFFATFAVSNVLSLTFALAAGFTFLSILSSPYRLQDFKQSLPNKLTLGFTFL  292 (389)
Q Consensus       217 ----tfaa~~t~PGG~~~~~G~~~l~~~~~f~~F~~~n~~a~~~S~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~l  292 (389)
                          .|.-..-.||=                ..-+++ .+.++.-..-.+.+ ..+..+....+       .++....+.
T Consensus       290 ~~~~~~~~~~~~~g~----------------i~~~~~-~w~i~~~~L~~~~~-~~~~~~~~~~~-------~~~~~~~~~  344 (600)
T KOG0509|consen  290 FLGLFYFISSWLPGV----------------IFLINS-LWLIKGLALGKLVL-TCLCATRKIVG-------FLLRPPLLS  344 (600)
T ss_pred             HHHHHHHHHhhccch----------------hhhhhh-HHHHhhhhhhhhhh-heeccchhhcc-------ccccchhHH
Confidence                22222222322                222233 44444411111111 11111111111       111222334


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCchHHHHHHHHHhHHHHHHHHhhhhhhhhHHHHhhhhhhhcccCCCCCccHHHHHHh-
Q 016455          293 FLSACLMTVAFAATILLMIKNKEHWAKILLYTCSIIPVGIFTLSYFSNYVTKSIARSCKKFCSKTGLPVPQCFISLLKR-  371 (389)
Q Consensus       293 ~~s~~~m~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  371 (389)
                      .+.....+|-++.|+. -+.+...|.....+++..+..++.++...+.+|+  +++..++..+.+++++++ +++++.+ 
T Consensus       345 ~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg--~i~~~~~~~~~tIs~l~d-~gkf~~en  420 (600)
T KOG0509|consen  345 GFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFITFGLFLRSDPG--FIPTSTEVGRETISQLID-FGKFDLEN  420 (600)
T ss_pred             HHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHhhc-cccccccc
Confidence            5555566777777777 4444455666677777777788888889999999  999999999999999999 9999999 


Q ss_pred             Hhhhhc
Q 016455          372 IFCFSK  377 (389)
Q Consensus       372 ~~c~~~  377 (389)
                      .||++.
T Consensus       421 ~FC~~c  426 (600)
T KOG0509|consen  421 RFCLTC  426 (600)
T ss_pred             cceeee
Confidence            799753

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.9e-27  Score=195.31  Aligned_cols=161  Identities=25%  Similarity=0.293  Sum_probs=128.9

Q ss_pred             HHHHHhCCC-CCccccccCCCCcHHHHHccCCCChh---hHh-hcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            4 ARFLIRRDT-SWEITDSFQDQSKPKIHRYGANPNAS---SVD-QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         4 v~~Ll~~ga-~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++.+++... +.|.++.  ..+++|||+|+..|..+   +|+ +.+..+|.+|..|+||||+||..|+.++|+.|+.+.+
T Consensus        19 veel~~s~~kSL~~r~d--qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~   96 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDD--QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSG   96 (226)
T ss_pred             HHHHHhcChhhhhcccc--ccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCC
Confidence            455666554 5555553  24567899999888766   555 6788889999999999999999999999999997669


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      +++|..+..|+|+||+|+..|+.+|+++|+++|+.    ++.+|..|.||||-|+..|..++++.+            ..
T Consensus        97 advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~----i~~kD~~~qtplHRAAavGklkvie~L------------i~  160 (226)
T KOG4412|consen   97 ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL----IRIKDKQGQTPLHRAAAVGKLKVIEYL------------IS  160 (226)
T ss_pred             CCcceecCCCcceehhhhcCChhhHHHHHHhcCCC----CcccccccCchhHHHHhccchhhHHHH------------Hh
Confidence            99999999999999999999999999999999988    999999999999999999887776211            11


Q ss_pred             HHHHhhcchhhhhhccCCCCChHHHH-hhhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMGFTPEELF-ATANN  189 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~Tpl~la-~~~~~  189 (389)
                      .+       ..+|..|+.|+||+|.+ ++-+.
T Consensus       161 ~~-------a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  161 QG-------APLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             cC-------CCCCcccccCccHHHHHHhccCc
Confidence            11       12688899999999988 44433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.8e-27  Score=192.03  Aligned_cols=159  Identities=20%  Similarity=0.283  Sum_probs=132.0

Q ss_pred             CHHHHHHH-hCCCCCccccccCCCCcHHHHHccCCCChh---hHhhc-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 016455            1 MELARFLI-RRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQK-GIGESSANDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         1 ~e~v~~Ll-~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      +|++.+|+ +.+..+|.+|   +.+.+|+|.|+..|..+   .|+.+ |+|+|..++.|+|+||+|+.+|+.+++++|+ 
T Consensus        51 ~eiv~fLlsq~nv~~ddkD---daGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl-  126 (226)
T KOG4412|consen   51 VEIVYFLLSQPNVKPDDKD---DAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL-  126 (226)
T ss_pred             hhHHHHHHhcCCCCCCCcc---ccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH-
Confidence            47899999 4566666665   45667899998888655   67777 9999999999999999999999999999999 


Q ss_pred             HCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHH
Q 016455           76 VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~  155 (389)
                      ..|+.++.+|..|.||||.|+.-|+.+++++|+..|+.    +|.+|+.|+||||.|...++.+..      -++.... 
T Consensus       127 e~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~----~n~qDk~G~TpL~~al~e~~~d~a------~lLV~~g-  195 (226)
T KOG4412|consen  127 EKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP----LNTQDKYGFTPLHHALAEGHPDVA------VLLVRAG-  195 (226)
T ss_pred             hcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC----CCcccccCccHHHHHHhccCchHH------HHHHHhc-
Confidence            78899999999999999999999999999999999998    999999999999999766766654      1111111 


Q ss_pred             HHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          156 LWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                                  ...+..|++| ||+.++...
T Consensus       196 ------------Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  196 ------------ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             ------------cceeeccccC-chHHHHHHH
Confidence                        1146778888 998877643

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=2.6e-25  Score=177.38  Aligned_cols=109  Identities=39%  Similarity=0.612  Sum_probs=96.1

Q ss_pred             HHHHHhhhchhHHHHHHHHHHhhhhhccCCCCCCCC---CCccccccCc-chhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 016455          196 KEWLKHTADRCLAVAIFVGTVAFFAAYTVPGGASVG---TGYPILLHHP-FFATFAVSNVLSLTFALAAGFTFLSILSSP  271 (389)
Q Consensus       196 ~~~~~~~~~s~~vVa~LiaTvtfaa~~t~PGG~~~~---~G~~~l~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~l~~~  271 (389)
                      +||++++++++++||+|||||||+|+++||||++|+   .|+|++.+++ .|++|+++|++||++|+++++.+++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999775   6999999888 999999999999999999988776322   


Q ss_pred             cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016455          272 YRLQDFKQSLPNKLTLGFTFLFLSACLMTVAFAATILLM  310 (389)
Q Consensus       272 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~~  310 (389)
                         +++.+..++.+.++..++++++.+|++||++|++.|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               334555667788899999999999999999999864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=3.6e-25  Score=213.81  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             CCcHHHHHccCCCChh---hHhhc-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccc-cCCChHHHHHHH
Q 016455           23 QSKPKIHRYGANPNAS---SVDQK-GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIK   97 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~   97 (389)
                      ....-.+.|++.|.++   .|++. |.+++..|.+|.|+||+||.+++.+++++|+ ++|+++|..+ .-|.||||+|++
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHH
Confidence            4455567788887766   66776 8888988999999999999999999999999 7888898888 678899999999


Q ss_pred             hCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           98 YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        98 ~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +|+..++++|+++|++    ++.+|.+|.||||+|++.++...+
T Consensus       122 ~G~~~vv~lLlqhGAd----pt~~D~~G~~~lHla~~~~~~~~v  161 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGAD----PTLKDKQGLTPLHLAAQFGHTALV  161 (600)
T ss_pred             cCcHHHHHHHHHcCCC----CceecCCCCcHHHHHHHhCchHHH
Confidence            9999999999999998    899999999999999988876554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.6e-23  Score=192.07  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=100.7

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++++|+++|++  .+|.   .+.+|||+|+..+..+   .|+++|++++..|  |+||||+|+..|+.++++.|+ ..
T Consensus        12 ~~~~~~Lis~~a~--~~D~---~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL-~~   83 (284)
T PHA02791         12 KQLKSFLSSKDAF--KADV---HGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FS   83 (284)
T ss_pred             HHHHHHHHhCCCC--CCCC---CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHH-HC
Confidence            3677888888875  4554   4557788887777655   7788888877654  678888888888888888888 67


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCc-ccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGN-TLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~-TpLh~A~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+ ||||+|+..++.+++
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad----in~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR----LMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cCccCCCCCcHHHHHHHHcCCHHHH
Confidence            888888888888888888888888888888888887    777887774 788888888877765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.3e-23  Score=207.18  Aligned_cols=158  Identities=20%  Similarity=0.258  Sum_probs=133.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..+..  .+.+|||.|+..+..+   +|+++|+++|.+|..|.||||+|++.|+.++++.|+ +.|
T Consensus       148 ~iv~~Ll~~gadin~~~~~--~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g  224 (477)
T PHA02878        148 EITKLLLSYGADINMKDRH--KGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL-ENG  224 (477)
T ss_pred             HHHHHHHHcCCCCCccCCC--CCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcC
Confidence            5899999999999998863  3678899999888765   899999999999999999999999999999999999 889


Q ss_pred             CCccccccCCChHHHHHHHh-CChHHHHHHHccCCccccccccccc-CCcccchhccccCCCcccccCCChhHHhhHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKY-RQLEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~  156 (389)
                      ++++.+|..|+||||+|+.. ++.+++++|+++|++    +|.++. .|+||||+|+  ++.+++      .+++..   
T Consensus       225 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad----vn~~~~~~g~TpLh~A~--~~~~~v------~~Ll~~---  289 (477)
T PHA02878        225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD----VNAKSYILGLTALHSSI--KSERKL------KLLLEY---  289 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC----CCccCCCCCCCHHHHHc--cCHHHH------HHHHHC---
Confidence            99999999999999999976 789999999999999    898886 8999999994  333333      111111   


Q ss_pred             HHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          157 WYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                                ...++..|.+|.||+++|.+.
T Consensus       290 ----------gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        290 ----------GADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             ----------CCCCCCcCCCCCCHHHHHHHH
Confidence                      112578899999999999863

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=7.1e-23  Score=201.89  Aligned_cols=178  Identities=17%  Similarity=0.199  Sum_probs=124.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcC--cHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSG--CIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~   76 (389)
                      |++++|+++|+++|.+|.   .+.+|||.|+..+..+   +|+++|+|+|.+|.+|+||||+|+..+  ..+++++|+ .
T Consensus        53 ~iv~~Ll~~Gadvn~~d~---~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~  128 (446)
T PHA02946         53 RFVEELLHRGYSPNETDD---DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-Q  128 (446)
T ss_pred             HHHHHHHHCcCCCCccCC---CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-H
Confidence            678999999999998886   4567888888877655   888999999999999999999988765  478888888 7


Q ss_pred             CCCCccc-cccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCC--ccccc----------
Q 016455           77 YPQAVEH-IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD--YVPEK----------  143 (389)
Q Consensus        77 ~~~~~~~-~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~--~~~~~----------  143 (389)
                      .|++++. .|.+|+|||| |+..++.+++++|++.|++    ++.+|.+|+||||+|+..++.  ++++.          
T Consensus       129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            7888874 5778888887 5566777888888887777    777777777777777654443  22211          


Q ss_pred             ---CCChhHHhhHHHH--HHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          144 ---MEGPALVLQEELL--WYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       144 ---l~~~~l~l~~~~~--~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                         -+..+++....-.  ..+.++-+.+...++.+|.+|+||+|+|++.+
T Consensus       204 ~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~  253 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTL  253 (446)
T ss_pred             cCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence               1222333322111  11122222223346788888999998888764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=7.1e-23  Score=204.78  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=130.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC----------------------------------------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP----------------------------------------------   35 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~----------------------------------------------   35 (389)
                      |++++|+++|+++|..|.   .+.+|||.|+..+                                              
T Consensus        51 e~vk~Ll~~gadvn~~d~---~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~  127 (477)
T PHA02878         51 DVVKSLLTRGHNVNQPDH---RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN  127 (477)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccC
Confidence            789999999999999987   4557788776432                                              


Q ss_pred             ---------------------ChhhHhhcCCCCCcCCCC-CCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHH
Q 016455           36 ---------------------NASSVDQKGIGESSANDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILH   93 (389)
Q Consensus        36 ---------------------~~~~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh   93 (389)
                                           .++.|+++|+++|.+|.. |.||||+|+..|+.++++.|+ ..|++++.+|..|+||||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpLh  206 (477)
T PHA02878        128 IQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLH  206 (477)
T ss_pred             cccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCCCCCHHH
Confidence                                 223677789999999998 999999999999999999999 789999999999999999


Q ss_pred             HHHHhCChHHHHHHHccCCcccccccccccCCcccchhcccc-CCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhh
Q 016455           94 VAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNH  172 (389)
Q Consensus        94 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~-~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~  172 (389)
                      .|++.|+.+++++|++.|++    ++.+|.+|+||||+|+.. ++.+++      .+.++.+             ..++.
T Consensus       207 ~A~~~~~~~iv~~Ll~~ga~----in~~d~~g~TpLh~A~~~~~~~~iv------~~Ll~~g-------------advn~  263 (477)
T PHA02878        207 HAVKHYNKPIVHILLENGAS----TDARDKCGNTPLHISVGYCKDYDIL------KLLLEHG-------------VDVNA  263 (477)
T ss_pred             HHHHhCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHhcCCHHHH------HHHHHcC-------------CCCCc
Confidence            99999999999999999999    999999999999999965 454544      1111111             11355


Q ss_pred             ccC-CCCChHHHHhh
Q 016455          173 RNN-MGFTPEELFAT  186 (389)
Q Consensus       173 ~n~-~g~Tpl~la~~  186 (389)
                      ++. .|.||+|+|..
T Consensus       264 ~~~~~g~TpLh~A~~  278 (477)
T PHA02878        264 KSYILGLTALHSSIK  278 (477)
T ss_pred             cCCCCCCCHHHHHcc
Confidence            554 79999999943

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=6.2e-23  Score=201.60  Aligned_cols=161  Identities=16%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..+.   .+.+|||.|+..+..+   +|+++|++++..+.+|.||||.|+..|+.++++.|+ ..+
T Consensus        16 ~iv~~Ll~~g~~~n~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~~   91 (413)
T PHA02875         16 DIARRLLDIGINPNFEIY---DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL-DLG   91 (413)
T ss_pred             HHHHHHHHCCCCCCccCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH-HcC
Confidence            789999999999998885   5668899988877665   899999999999999999999999999999999999 455


Q ss_pred             CC-ccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455           79 QA-VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        79 ~~-~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      .+ .+..+.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++      +.+..    
T Consensus        92 ~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad----~~~~~~~g~tpLh~A~~~~~~~~v~------~Ll~~----  157 (413)
T PHA02875         92 KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD----PDIPNTDKFSPLHLAVMMGDIKGIE------LLIDH----  157 (413)
T ss_pred             CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHcCCHHHHH------HHHhc----
Confidence            44 455678899999999999999999999999999    9999999999999999998877661      11111    


Q ss_pred             HHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          158 YERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                               ....+.+|..|.||+|+|+..+.
T Consensus       158 ---------g~~~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        158 ---------KACLDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             ---------CCCCCCCCCCCCCHHHHHHHcCC
Confidence                     11246788899999999987643

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.2e-23  Score=206.92  Aligned_cols=127  Identities=17%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccC--------CCChhhHhhcCCCCCcCCCCCCcHHHHHHHcC---cHHH
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGA--------NPNASSVDQKGIGESSANDNAETPLFLATKSG---CIEI   69 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~--------~~~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g---~~~~   69 (389)
                      .|++++|+++|+|+|..|.   .+.+|||.+..        .+.+++|+++|+|+|.+|.+|+||||+|+..|   +.++
T Consensus        51 ~~iv~~Ll~~Gadvn~~d~---~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         51 TDIVKLFINLGANVNGLDN---EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCC---CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            3789999999999999886   44566776543        23456899999999999999999999999876   7899


Q ss_pred             HHHHHHHCCCCccccccCCChHHHHHHHhCC---hHHHHHHHccCCcccccccccc-cCCcccchhcccc
Q 016455           70 VKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ---LEIFELVVQMEVPMRRLVRKID-NGGNTLLHMTGIK  135 (389)
Q Consensus        70 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~---~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A~~~  135 (389)
                      +++|+ +.|++++.+|.+|.||||+|++.++   .+++++|+++|++    ++.+| ..|.||||.+++.
T Consensus       128 v~~Ll-~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad----in~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        128 LLFMI-ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD----INTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             HHHHH-HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC----cccccCcCCCcHHHHHHHh
Confidence            99999 7899999999999999999999987   8999999999988    77775 5688899887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.89  E-value=8.1e-23  Score=202.01  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=129.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |+++.|++.|+++|.+|.   .+.+|+|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.++++.|+ +.|
T Consensus       105 ~~i~~ll~~g~d~n~~~~---~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g  180 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDA---ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKG  180 (434)
T ss_pred             HHHHHHHHCcCCCCCCCC---CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCC
Confidence            466777777888888775   5567899998887655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      ++++..|..|+||||+|+..|+.+++++|++.|++    ++.++.+|.||||+|+..++..+..            +.  
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~----i~~~~~~g~TpL~~A~~~~~~~i~~------------Ll--  242 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH----IMNKCKNGFTPLHNAIIHNRSAIEL------------LI--  242 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CcCCCCCCCCHHHHHHHCChHHHHH------------HH--
Confidence            99999999999999999999999999999999998    8999999999999999865422110            00  


Q ss_pred             HHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                             ....++.+|.+|.||+|+|++.
T Consensus       243 -------~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        243 -------NNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             -------cCCCCCCcCCCCCCHHHHHHhc
Confidence                   0111456677777777777653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.88  E-value=9.4e-23  Score=188.30  Aligned_cols=156  Identities=17%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+     +.+|||.|+..+..+   .|+++|++++.+|..|+||||+|+..|+.++++.|+ ..+
T Consensus        44 eiv~~Ll~~ga~~n~~d-----~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~g  117 (284)
T PHA02791         44 RLVCTLLNAGALKNLLE-----NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKN  117 (284)
T ss_pred             HHHHHHHHCcCCCcCCC-----CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            68999999999988764     247899998887755   889999999999999999999999999999999999 788


Q ss_pred             CCccccccCCC-hHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccchhccccCCCcccccCCChhHHhhHHHH
Q 016455           79 QAVEHIDDEGR-NILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        79 ~~~~~~d~~G~-t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~  156 (389)
                      ++++.+|..|+ ||||+|+..|+.+++++|++++.+      ..| ..|+||||+|++.|+.+++      .+++     
T Consensus       118 adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~------~~d~~~g~TpLh~Aa~~g~~eiv------~lLL-----  180 (284)
T PHA02791        118 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------TFDLAILLSCIHITIKNGHVDMM------ILLL-----  180 (284)
T ss_pred             CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc------ccccccCccHHHHHHHcCCHHHH------HHHH-----
Confidence            99999999885 899999999999999999998754      233 3589999999999998777      1111     


Q ss_pred             HHHHHHhhcchhhhhhccCCCCCh-HHHHhhhh
Q 016455          157 WYERVEEVSIPHFRNHRNNMGFTP-EELFATAN  188 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~Tp-l~la~~~~  188 (389)
                            +.  ...++.+|..|.|| +|+|++.+
T Consensus       181 ------~~--gAd~n~~d~~g~t~~L~~Aa~~~  205 (284)
T PHA02791        181 ------DY--MTSTNTNNSLLFIPDIKLAIDNK  205 (284)
T ss_pred             ------HC--CCCCCcccCCCCChHHHHHHHcC
Confidence                  11  11257788889987 99988764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.88  E-value=1.6e-22  Score=206.47  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=94.9

Q ss_pred             HHHHHHHhCC-CCCccc-cccCCCCcHHHHHccCC-----CChhhHhhcCCCCCcCCCCCCcHHHHHHHcCc--HHHHHH
Q 016455            2 ELARFLIRRD-TSWEIT-DSFQDQSKPKIHRYGAN-----PNASSVDQKGIGESSANDNAETPLFLATKSGC--IEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~g-a~vn~~-d~~~~~~~~~lh~a~~~-----~~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~--~~~v~~   72 (389)
                      |++++|+++| +|+|.. |.   .+.+|||.|+..     +.+++|+++|+|+|.+|.+|.||||+|++.|+  .+++++
T Consensus       156 eiVk~LLe~G~ADIN~~~d~---~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKK---TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             HHHHHHHHCCCCCcccccCC---CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            6778888888 887776 53   455667765322     34557778888888888888888888888774  477888


Q ss_pred             HHHHCCCCccccccCCChHHHHH-------------------------------------HHhCChHHHHHHHccCCccc
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVA-------------------------------------IKYRQLEIFELVVQMEVPMR  115 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A-------------------------------------~~~~~~~iv~~Ll~~g~~~~  115 (389)
                      |+ +.|+++|.+|..|+||||.|                                     +++|+.+++++|++.|++  
T Consensus       233 LL-e~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd--  309 (764)
T PHA02716        233 II-ELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK--  309 (764)
T ss_pred             HH-HcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc--
Confidence            88 67788888888888888754                                     345777888888888877  


Q ss_pred             ccccccccCCcccchhccc--cCCCccc
Q 016455          116 RLVRKIDNGGNTLLHMTGI--KRSDYVP  141 (389)
Q Consensus       116 ~~~~~~d~~G~TpLh~A~~--~~~~~~~  141 (389)
                        ++.+|.+|+||||+|+.  .++.+++
T Consensus       310 --IN~kD~~G~TPLH~Aaa~~~~~~eIV  335 (764)
T PHA02716        310 --LHYKDSAGRTCLHQYILRHNISTDII  335 (764)
T ss_pred             --eeccCCCCCCHHHHHHHHhCCCchHH
Confidence              77888888888887653  3344544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.88  E-value=1.2e-22  Score=207.40  Aligned_cols=125  Identities=19%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC-----hhhHhhcCCCCCcCCCCCCcHHHHH---------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN-----ASSVDQKGIGESSANDNAETPLFLA---------------   61 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~-----~~~Ll~~ga~~n~~d~~G~tpLh~A---------------   61 (389)
                      |++++|+++|+++|.+|.   .+.+|||.|+..+.     +++|+++|+|+|.+|..|+||||.|               
T Consensus       193 eIVklLLe~GADVN~kD~---~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        193 DILEWLCNNGVNVNLQNN---HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             HHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            688999999999998886   55678888887663     4588899999999999999999865               


Q ss_pred             ----------------------HHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHH--hCChHHHHHHHccCCccccc
Q 016455           62 ----------------------TKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK--YRQLEIFELVVQMEVPMRRL  117 (389)
Q Consensus        62 ----------------------a~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~--~~~~~iv~~Ll~~g~~~~~~  117 (389)
                                            ++.|+.++++.|+ +.|++++.+|.+|+||||+|+.  +++.+++++|+++|++    
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL-e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD----  344 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFL-QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND----  344 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHH-hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC----
Confidence                                  3457788888888 7788999999999999998764  4578899999999988    


Q ss_pred             ccccccCCcccchhccc
Q 016455          118 VRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       118 ~~~~d~~G~TpLh~A~~  134 (389)
                      +|.+|..|+||||+|+.
T Consensus       345 IN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        345 LNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             CccCCCCCCCHHHHHHH
Confidence            89999999999998865

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.9e-22  Score=199.30  Aligned_cols=161  Identities=20%  Similarity=0.241  Sum_probs=99.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhh-----------------------cCCCCCcCCCCCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQ-----------------------KGIGESSANDNAE   55 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~-----------------------~ga~~n~~d~~G~   55 (389)
                      |++++|+++|+++|..+.   .+.+|+|.|+..+..+   +|++                       +|++++.+|..|.
T Consensus        49 ~iv~~Ll~~Ga~~n~~~~---~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~  125 (434)
T PHA02874         49 KIVELFIKHGADINHINT---KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK  125 (434)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCc
Confidence            566666666666666554   3335566555554432   3333                       3444555666666


Q ss_pred             cHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcccc
Q 016455           56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~  135 (389)
                      ||||+|+..|+.++++.|+ +.|++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..
T Consensus       126 T~Lh~A~~~~~~~~v~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~----~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        126 TFLHYAIKKGDLESIKMLF-EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY----ANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             cHHHHHHHCCCHHHHHHHH-hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHc
Confidence            7777777777777776666 55666666666677777777776677777777766666    666666677777777666


Q ss_pred             CCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          136 RSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       136 ~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      |+.++++      +.++.             ....+.++.+|.||+|.|...+.
T Consensus       201 g~~~iv~------~Ll~~-------------g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        201 GDYACIK------LLIDH-------------GNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CCHHHHH------HHHhC-------------CCCCcCCCCCCCCHHHHHHHCCh
Confidence            6655441      11110             11145677889999999887543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.5e-22  Score=178.56  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=124.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC-----ChhhHhhcCCCCCcCC-CCCCcHHHHHHHc---CcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP-----NASSVDQKGIGESSAN-DNAETPLFLATKS---GCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~-----~~~~Ll~~ga~~n~~d-~~G~tpLh~Aa~~---g~~~~v~~   72 (389)
                      +.++.|++.   +|..|.   .+.+|||.|+..+     .+++|+++|+++|.++ ..|.||||+|+..   ++.+++++
T Consensus        35 ~~vk~Li~~---~n~~~~---~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~  108 (209)
T PHA02859         35 EGVKKWIKF---VNDCND---LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKI  108 (209)
T ss_pred             HHHHHHHHh---hhccCc---cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHH
Confidence            678889875   345554   5668899886543     3559999999999997 4899999998864   57999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHH--hCChHHHHHHHccCCcccccccccccCCcccchhc-cccCCCcccccCCChhH
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIK--YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT-GIKRSDYVPEKMEGPAL  149 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~--~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A-~~~~~~~~~~~l~~~~l  149 (389)
                      |+ ++|++++.+|.+|+||||+|+.  .++.+++++|++.|++    ++.+|.+|+||||.+ +..++.+++      .+
T Consensus       109 Ll-~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----in~~d~~g~t~Lh~~a~~~~~~~iv------~~  177 (209)
T PHA02859        109 LI-DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----FLNKDFDNNNILYSYILFHSDKKIF------DF  177 (209)
T ss_pred             HH-HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----cccccCCCCcHHHHHHHhcCCHHHH------HH
Confidence            99 7899999999999999999986  4689999999999999    999999999999964 555555554      11


Q ss_pred             HhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          150 VLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       150 ~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                      ++..      .       ..++.+|..|+||+|+|..+
T Consensus       178 Ll~~------G-------adi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        178 LTSL------G-------IDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHc------C-------CCCCCCCCCCCCHHHHHhhh
Confidence            1111      1       11578899999999999764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.2e-22  Score=201.99  Aligned_cols=74  Identities=12%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             hHhhcCCCC-CcCCCCCCcHHHHHHHc--CcHHHHHHHHHHCCCCccc-cccCCChHHHHHHHhC----ChHHHHHHHcc
Q 016455           39 SVDQKGIGE-SSANDNAETPLFLATKS--GCIEIVKEIFNVYPQAVEH-IDDEGRNILHVAIKYR----QLEIFELVVQM  110 (389)
Q Consensus        39 ~Ll~~ga~~-n~~d~~G~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~-~d~~G~t~Lh~A~~~~----~~~iv~~Ll~~  110 (389)
                      +|+++|+|+ +.+|..|+||||+|+..  ++.+++++|+ +.|++++. .|..|.||||+|++++    +.+++++|+++
T Consensus       129 ~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll-~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~  207 (494)
T PHA02989        129 FLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL-SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK  207 (494)
T ss_pred             HHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC
Confidence            444555555 44444455555544432  3444555544 44444444 3444555555444332    44455555544


Q ss_pred             CCc
Q 016455          111 EVP  113 (389)
Q Consensus       111 g~~  113 (389)
                      |++
T Consensus       208 Ga~  210 (494)
T PHA02989        208 GVN  210 (494)
T ss_pred             CCC
Confidence            443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.8e-22  Score=200.79  Aligned_cols=179  Identities=17%  Similarity=0.115  Sum_probs=109.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHcc--CCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcC--cHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYG--ANPNAS---SVDQKGIGESSANDNAETPLFLATKSG--CIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~--~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g--~~~~v~~Ll   74 (389)
                      |++++|+++|+++|..|.   .+.+|+|.|+  ..+..+   .|+++|++++..|..|.||||+|+..|  +.++++.|+
T Consensus        87 ~iv~~Ll~~ga~i~~~d~---~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll  163 (480)
T PHA03100         87 EIVKLLLEYGANVNAPDN---NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI  163 (480)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH
Confidence            567777777777766664   4445666666  555443   667777777777777777777777777  777777777


Q ss_pred             HHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCC------cccchhccccCC--CcccccC--
Q 016455           75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGG------NTLLHMTGIKRS--DYVPEKM--  144 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G------~TpLh~A~~~~~--~~~~~~l--  144 (389)
                       +.|++++.+|..|+||||+|+..|+.+++++|+++|++    ++..|..|      .||||.|+..++  .++++.+  
T Consensus       164 -~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        164 -DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD----INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             -HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC----ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence             56677777777777777777777777777777777766    55555555      566666665555  3333111  


Q ss_pred             -----------CChhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhhhh
Q 016455          145 -----------EGPALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 -----------~~~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                                 +..++.........+.++.+.. ...++.+|.+|+||+++|.+.+
T Consensus       239 ~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        239 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhC
Confidence                       1122222221111111221111 1125788999999999998754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.1e-22  Score=200.49  Aligned_cols=181  Identities=21%  Similarity=0.259  Sum_probs=145.0

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHH-----ccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHH--HcCcHHHH
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHR-----YGANPNAS---SVDQKGIGESSANDNAETPLFLAT--KSGCIEIV   70 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~-----a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa--~~g~~~~v   70 (389)
                      .+++++|+++|+++|..+.   .+.+++|.     |+..+..+   .|+++|++++..|..|.||||+|+  ..|+.+++
T Consensus        48 ~~ivk~Ll~~g~~~~~~~~---~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv  124 (480)
T PHA03100         48 IDVVKILLDNGADINSSTK---NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV  124 (480)
T ss_pred             HHHHHHHHHcCCCCCCccc---cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHH
Confidence            3789999999999998886   44577888     87777655   899999999999999999999999  99999999


Q ss_pred             HHHHHHCCCCccccccCCChHHHHHHHhC--ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCC---
Q 016455           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYR--QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME---  145 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~--~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~---  145 (389)
                      ++|+ +.|++++..|..|+||||+|+..|  +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.   
T Consensus       125 ~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d----in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  199 (480)
T PHA03100        125 EYLL-DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD----INAKNRYGYTPLHIAVEKGNIDVIKFLLDNG  199 (480)
T ss_pred             HHHH-HcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC----cccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999 789999999999999999999999  99999999999998    9999999999999999999887764331   


Q ss_pred             ----------------ChhHHhhHHHHH--HHHHHhhcch-hhhhhccCCCCChHHHHhhhhh
Q 016455          146 ----------------GPALVLQEELLW--YERVEEVSIP-HFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       146 ----------------~~~l~l~~~~~~--~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                                      ...+........  .+.++.+... ..++.+|..|.||+|+|+..+.
T Consensus       200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        200 ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence                            111111111111  2222222222 2246788999999999987643

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=191.08  Aligned_cols=126  Identities=18%  Similarity=0.255  Sum_probs=96.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC-----ChhhHhhcCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP-----NASSVDQKGIGESS-ANDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~-----~~~~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      |++++|+++|+++|.+|.   .+.+|||+|+..+     .+++|+++|+++|. .|.+|.|||| |+..|+.++++.|+ 
T Consensus        86 eiv~lLL~~GAdin~~d~---~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll-  160 (446)
T PHA02946         86 RIVAMLLTHGADPNACDK---QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIM-  160 (446)
T ss_pred             HHHHHHHHCcCCCCCCCC---CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHH-
Confidence            789999999999998886   5557788765433     24578888988874 5778888887 56667888888887 


Q ss_pred             HCCCCccccccCCChHHHHHHHhCC--hHHHHHHHccCCcccccccccccCCcccchhccccC
Q 016455           76 VYPQAVEHIDDEGRNILHVAIKYRQ--LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~~~--~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      ..|++++.+|..|+||||+|+..++  .+++++|++.|++    ++.+|.+|+||||+|+..+
T Consensus       161 ~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad----in~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        161 SIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS----PSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             hccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcC
Confidence            6677888888888888887776544  5777888888877    7788888888888887664

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=192.50  Aligned_cols=132  Identities=17%  Similarity=0.156  Sum_probs=118.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCC-cCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGES-SANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n-~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|++++..+.   .+.+|+|.|+..|..+   .|+++|++.+ ..+.+|.||||+|+..|+.+++++|+ +.
T Consensus        49 ~~v~~Ll~~ga~~~~~~~---~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll-~~  124 (413)
T PHA02875         49 EAIKLLMKHGAIPDVKYP---DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI-AR  124 (413)
T ss_pred             HHHHHHHhCCCCccccCC---CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHH-hC
Confidence            789999999999988875   3456789888888765   8889998874 55778999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..|+.+++
T Consensus       125 gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~TpL~~A~~~g~~eiv  184 (413)
T PHA02875        125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC----LDIEDCCGCTPLIIAMAKGDIAIC  184 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999998    999999999999999999987776

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=194.82  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=115.1

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCC---C---hhhHhhcCCCCCcCCCCCCcHHHHHHHcC-cHHHHHHH
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP---N---ASSVDQKGIGESSANDNAETPLFLATKSG-CIEIVKEI   73 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~---~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g-~~~~v~~L   73 (389)
                      .|++++|+++|+++|..+.   .+.+|||.|+..+   .   ++.|+++|+|+|.+|..|.||||+|+..| +.+++++|
T Consensus        27 ~~~v~~Ll~~ga~vn~~~~---~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lL  103 (471)
T PHA03095         27 VEEVRRLLAAGADVNFRGE---YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLL  103 (471)
T ss_pred             HHHHHHHHHcCCCcccCCC---CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHH
Confidence            3789999999999999886   4557788777665   4   34899999999999999999999999999 59999999


Q ss_pred             HHHCCCCccccccCCChHHHHHH--HhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           74 FNVYPQAVEHIDDEGRNILHVAI--KYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~--~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      + +.|++++.+|..|+||||+|+  ..++.+++++|+++|++    ++.+|.+|.||||+|+..++
T Consensus       104 l-~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad----~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095        104 I-KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD----VNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             H-HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCC
Confidence            9 889999999999999999999  55688999999999999    99999999999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.86  E-value=9.3e-22  Score=197.47  Aligned_cols=126  Identities=11%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC---------ChhhHhhcCCCCCcCCCCCCcHHHHHHHc---CcHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP---------NASSVDQKGIGESSANDNAETPLFLATKS---GCIEI   69 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~---------~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~---g~~~~   69 (389)
                      |++++|+++|+|+|.++.    +.+|+|.|...+         .+++|+++|+|+|.+|.+|.||||.|+..   |+.++
T Consensus        51 ~iv~~Ll~~GAdvn~~~~----~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         51 KIVKLLIDNGADVNYKGY----IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             HHHHHHHHcCCCccCCCC----CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHH
Confidence            678888888888887652    245666654332         35578888888888888888888877654   57888


Q ss_pred             HHHHHHHCCCCc-cccccCCChHHHHHHHh--CChHHHHHHHccCCcccccccc-cccCCcccchhccccC
Q 016455           70 VKEIFNVYPQAV-EHIDDEGRNILHVAIKY--RQLEIFELVVQMEVPMRRLVRK-IDNGGNTLLHMTGIKR  136 (389)
Q Consensus        70 v~~Ll~~~~~~~-~~~d~~G~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~~~~-~d~~G~TpLh~A~~~~  136 (389)
                      +++|+ +.|+++ +.+|..|+||||+|+..  ++.+++++|+++|++    ++. .|..|.||||+|++.+
T Consensus       127 v~~Ll-~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad----i~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        127 LRFLL-SKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN----LFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHH-HCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----ccccccccCCChHHHHHhcc
Confidence            88888 678888 77888888888888764  577888888888887    776 5778888888876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=172.47  Aligned_cols=128  Identities=14%  Similarity=0.242  Sum_probs=111.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCC------CChhhHhhcCCCCCcCCCCCCcHHHHHHH--cCcHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGAN------PNASSVDQKGIGESSANDNAETPLFLATK--SGCIEIVKEI   73 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~------~~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~--~g~~~~v~~L   73 (389)
                      |++++|+++|+++|.++.  ..+.+|+|.|+..      +.+++|+++|+++|.+|.+|.||||+|+.  .++.+++++|
T Consensus        67 eiv~~Ll~~gadvn~~~~--~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         67 EILKFLIENGADVNFKTR--DNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             HHHHHHHHCCCCCCccCC--CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            789999999999998863  2456788876532      23458899999999999999999999986  4789999999


Q ss_pred             HHHCCCCccccccCCChHHHH-HHHhCChHHHHHHHccCCcccccccccccCCcccchhccccC
Q 016455           74 FNVYPQAVEHIDDEGRNILHV-AIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~-A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      + +.|++++.+|.+|.||||. |+..++.+++++|+++|++    ++.+|..|+||||+|..++
T Consensus       145 i-~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        145 I-DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID----INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             H-HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhhh
Confidence            9 8899999999999999996 5668899999999999999    9999999999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=6.8e-21  Score=190.26  Aligned_cols=126  Identities=18%  Similarity=0.241  Sum_probs=111.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC----hhhHhhcCCCCCcCCCCCCcHHHHHH--HcCcHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN----ASSVDQKGIGESSANDNAETPLFLAT--KSGCIEIVKEIFN   75 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~----~~~Ll~~ga~~n~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~   75 (389)
                      |++++|+++|+|+|.++.   .+.+|+|.|+..+.    +++|+++|+++|.+|..|.||||+|+  ..++.++++.|+ 
T Consensus        64 ~iv~~Ll~~Gadin~~~~---~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll-  139 (471)
T PHA03095         64 DIVRLLLEAGADVNAPER---CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL-  139 (471)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHH-
Confidence            789999999999999997   56678898887773    44899999999999999999999999  567899999999 


Q ss_pred             HCCCCccccccCCChHHHHHHHhC--ChHHHHHHHccCCcccccccccccCCcccchhcccc
Q 016455           76 VYPQAVEHIDDEGRNILHVAIKYR--QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~~--~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~  135 (389)
                      +.|++++.+|..|+||||+|+..+  +.+++++|+++|++    ++.+|..|+||||+|+..
T Consensus       140 ~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~----~~~~d~~g~t~Lh~~~~~  197 (471)
T PHA03095        140 RKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD----VYAVDDRFRSLLHHHLQS  197 (471)
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHH
Confidence            789999999999999999999876  57899999999998    788899999999998865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-21  Score=180.84  Aligned_cols=161  Identities=22%  Similarity=0.219  Sum_probs=134.1

Q ss_pred             HHHHHHHh-CCCCCccc-----cccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIR-RDTSWEIT-----DSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~-~ga~vn~~-----d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|++ .++++...     |.....+.+|+..|+..|++   +.|+++|+++|.....+.|||-.||..|+.+++++
T Consensus        56 ~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKy  135 (615)
T KOG0508|consen   56 DVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKY  135 (615)
T ss_pred             HHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHH
Confidence            68999998 57887754     22234566777766666655   48999999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhh
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~  152 (389)
                      |+ ++++|++..|+.|+|.||+|+.+||.+|+++|++.|+|    +|.++..|||+||.+++.|+.+++      .++  
T Consensus       136 Lv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD----vn~ks~kGNTALH~caEsG~vdiv------q~L--  202 (615)
T KOG0508|consen  136 LV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD----VNAKSYKGNTALHDCAESGSVDIV------QLL--  202 (615)
T ss_pred             HH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC----cchhcccCchHHHhhhhcccHHHH------HHH--
Confidence            99 88999999999999999999999999999999999999    999999999999999999998887      111  


Q ss_pred             HHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          153 EELLWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                        +.|-.          .-.+|..|.||+-.|+.+
T Consensus       203 --l~~ga----------~i~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  203 --LKHGA----------KIDVDGHGMTPLLLAAVT  225 (615)
T ss_pred             --HhCCc----------eeeecCCCCchHHHHhhh
Confidence              11111          245677899999888765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=7.4e-21  Score=198.25  Aligned_cols=128  Identities=16%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC----hhhHhhcCCCCCcCCCCCCcHHHHHHHc-CcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN----ASSVDQKGIGESSANDNAETPLFLATKS-GCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~----~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~-g~~~~v~~Ll~~   76 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+.    ++.|++.|++++..|..|.||||+|+.. ++.++++.|+ .
T Consensus       288 ~iv~lLl~~gadin~~d~---~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl-~  363 (682)
T PHA02876        288 RLVPKLLERGADVNAKNI---KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL-E  363 (682)
T ss_pred             HHHHHHHHCCCCCCCcCC---CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHH-H
Confidence            467888888888888775   45567777776652    3477777888877777788888887775 3566666666 6


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      .|++++.+|..|+||||+|+..|+.+++++|++.|++    ++..|..|.||||+|+..++
T Consensus       364 ~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad----~~~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        364 LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD----IEALSQKIGTALHFALCGTN  420 (682)
T ss_pred             cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCCchHHHHHHcCC
Confidence            7777777787888888888888888888888777777    77777777777777765443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=6.7e-21  Score=182.92  Aligned_cols=160  Identities=13%  Similarity=0.058  Sum_probs=130.3

Q ss_pred             CHHHHHHHhCCCCCc------cccccCCCCcHHHHHccC--CCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHH
Q 016455            1 MELARFLIRRDTSWE------ITDSFQDQSKPKIHRYGA--NPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEI   69 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn------~~d~~~~~~~~~lh~a~~--~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~   69 (389)
                      +|++++|+.+|+++|      .++.   ...++||.++.  .+.   +++|+++|||++..  ++.||+|.|+..|+.++
T Consensus        90 k~~~~~l~s~~~~~~~~~~~~~~~~---~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         90 KDIISALVSKNYMEDIFSIIIKNCN---SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSV  164 (437)
T ss_pred             HHHHHHHHhcccccchhhhhhhccc---cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHH
Confidence            489999999999999      5553   56788898776  444   44999999999874  45899999999999999


Q ss_pred             HHHHHHHCCCCc-ccc-----ccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccccc
Q 016455           70 VKEIFNVYPQAV-EHI-----DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus        70 v~~Ll~~~~~~~-~~~-----d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~  143 (389)
                      +++|+ .+|++. +..     +..|.+++|.|+.+++.+++++|+++|++    +|.+|.+|+||||+|+..|+.+++  
T Consensus       165 Vk~Ll-s~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD----IN~kD~~G~TpLh~Aa~~g~~eiV--  237 (437)
T PHA02795        165 VEFIL-NCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED----INQLDAGGRTLLYRAIYAGYIDLV--  237 (437)
T ss_pred             HHHHH-hcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC----cCcCCCCCCCHHHHHHHcCCHHHH--
Confidence            99999 667633 222     23588999999999999999999999999    999999999999999999998777  


Q ss_pred             CCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          144 MEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       144 l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                          .+++..+             ..++.+|.+|.||+|+|+..+.
T Consensus       238 ----elLL~~G-------------AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        238 ----SWLLENG-------------ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ----HHHHHCC-------------CCCCCcCCCCCCHHHHHHHcCC
Confidence                2221111             1268889999999999988653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=7.7e-21  Score=187.49  Aligned_cols=185  Identities=18%  Similarity=0.237  Sum_probs=134.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHH--
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV--   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~--   76 (389)
                      +..+.|+++|+|+|..|.   .+.||||.|+..+..+   .|++.|+|+...|.+|.+|+|.|++.|..|+.+.++.+  
T Consensus       135 s~L~~Ll~~~~dvnl~de---~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g  211 (929)
T KOG0510|consen  135 SCLKLLLDYGADVNLEDE---NGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHG  211 (929)
T ss_pred             HHHHHHHHhcCCcccccc---CCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhcccc
Confidence            567888888888888885   5567788887777665   77888888888888888888888888888888888853  


Q ss_pred             --CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc-----------ccccccccccCCcccchhccccCCCccccc
Q 016455           77 --YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP-----------MRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus        77 --~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~-----------~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~  143 (389)
                        ....+|..|..|.||||.|++.|+.++++..++.|..           .+.++|..|++|.||||+|++.|+.+.++.
T Consensus       212 ~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~  291 (929)
T KOG0510|consen  212 YERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDN  291 (929)
T ss_pred             chhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHH
Confidence              3456778888888889999998998888888877643           123678889999999999999988887744


Q ss_pred             CC-------------ChhHHhhHHHHHHHHHHhhcc---hhhhhhccCCCCChHHHHhhhhh
Q 016455          144 ME-------------GPALVLQEELLWYERVEEVSI---PHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       144 l~-------------~~~l~l~~~~~~~~~v~~~~~---~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +.             ..+++..........++.+..   ....+..|..|.||+|++++++.
T Consensus       292 Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  292 LLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             HHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence            31             223444433333333333332   22346677788888888886543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.83  E-value=3.1e-20  Score=193.62  Aligned_cols=179  Identities=21%  Similarity=0.214  Sum_probs=142.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh----hhHhhcCCCCCcCCCCCCcHHHHHHHcC-cHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA----SSVDQKGIGESSANDNAETPLFLATKSG-CIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g-~~~~v~~Ll~~   76 (389)
                      +.+++|++.|+++|..|.   .+.+|||.|+..+..    ++|+++|++++.+|.+|+||||+|+..| +.++++.|+ .
T Consensus       254 ~~~~~Ll~~g~~vn~~d~---~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~  329 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDD---CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI-M  329 (682)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHH-H
Confidence            678999999999998886   556889999988764    3788999999999999999999999999 589999999 8


Q ss_pred             CCCCccccccCCChHHHHHHHh-CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCC----------
Q 016455           77 YPQAVEHIDDEGRNILHVAIKY-RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME----------  145 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~----------  145 (389)
                      .|++++..|..|+||||+|+.. ++.+++++|++.|++    +|.+|..|+||||+|+..++.++++.+.          
T Consensus       330 ~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad----in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC----CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            8999999999999999999985 578999999999999    9999999999999999999887764331          


Q ss_pred             ---ChhHHhhHHHH-HHHHHHhhc-chhhhhhccCCCCChHHHHhhhh
Q 016455          146 ---GPALVLQEELL-WYERVEEVS-IPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 ---~~~l~l~~~~~-~~~~v~~~~-~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                         ..++....... ....++.+. ....++.+|.+|+||+|+|++.+
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence               12222221100 011112111 12235789999999999998754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.83  E-value=2.5e-20  Score=197.25  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=129.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|+|+|..|.   .+.+|||.|+..|..+   .|+++|+|+|.+|.+|.||||+|+..|+.++++.|+ +.+
T Consensus       539 ~~l~~Ll~~G~d~n~~d~---~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~-~~~  614 (823)
T PLN03192        539 ALLEELLKAKLDPDIGDS---KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY-HFA  614 (823)
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-hcC
Confidence            678999999999999886   5667899898888765   889999999999999999999999999999999998 555


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      +..+  +..|.++||.|+.+|+.++++.|+++|++    +|.+|.+|+||||+|+..|+.+++      .+++..+.   
T Consensus       615 ~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----in~~d~~G~TpLh~A~~~g~~~iv------~~Ll~~GA---  679 (823)
T PLN03192        615 SISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN----VDSEDHQGATALQVAMAEDHVDMV------RLLIMNGA---  679 (823)
T ss_pred             cccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCCcHHHH------HHHHHcCC---
Confidence            5443  34678999999999999999999999998    999999999999999999988877      22222111   


Q ss_pred             HHHHhhcchhhhhhccCCC-CChHHHHhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMG-FTPEELFATA  187 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g-~Tpl~la~~~  187 (389)
                                .++..|.+| .||.+++...
T Consensus       680 ----------dv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        680 ----------DVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             ----------CCCCCCCCCCCCHHHHHHHH
Confidence                      146677777 9999887543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=9e-20  Score=170.06  Aligned_cols=135  Identities=19%  Similarity=0.266  Sum_probs=121.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |+||.|+++|++||....   +..+||-.||..|..+   +|+++|+|++..|..|.|.||+||.+||.+++++|+ +.|
T Consensus        98 ~vVk~L~~~ga~VN~tT~---TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl-e~g  173 (615)
T KOG0508|consen   98 EVVKLLLRRGASVNDTTR---TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL-EQG  173 (615)
T ss_pred             HHHHHHHHhcCccccccc---cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH-HhC
Confidence            799999999999998775   5556677777776654   899999999999999999999999999999999999 889


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCC
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME  145 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~  145 (389)
                      +|+|.++..|+|+||.|++.|+.+++++|+++|+.     -.+|..|.|||..|+..|+..+++.+.
T Consensus       174 ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-----i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  174 ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK-----IDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             CCcchhcccCchHHHhhhhcccHHHHHHHHhCCce-----eeecCCCCchHHHHhhhcchHHHHHHh
Confidence            99999999999999999999999999999999985     456888999999999999998886543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=7.7e-20  Score=175.63  Aligned_cols=127  Identities=17%  Similarity=0.213  Sum_probs=112.3

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCC-cC-----CCCCCcHHHHHHHcCcHHHHH
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGES-SA-----NDNAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n-~~-----d~~G~tpLh~Aa~~g~~~~v~   71 (389)
                      +|++++|+++|||+|..+.     .+++|.|+..+.   +++|+++|++.+ ..     +..|.||+|.|+..++.++++
T Consensus       131 ~eiV~~LI~~GADIn~~~~-----~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        131 IDIVDFMVDHGAVIYKIEC-----LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             HHHHHHHHHCCCCCCCCCC-----CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            4899999999999997542     578999887655   459999998653 22     234889999999999999999


Q ss_pred             HHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      +|+ .+|+++|.+|..|+||||+|+..|+.+++++|+++|++    +|.+|.+|+||||+|+..|+
T Consensus       206 ~LI-s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd----IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        206 LCI-PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN----VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHH-hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCC
Confidence            999 88999999999999999999999999999999999999    99999999999999999885

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=7.5e-20  Score=180.54  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=122.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +.++.|++.|+|++..+.   ....|+|.|+..+..+   .|+++|+|+|..|..|.||||+||..++.|..++|+ +.+
T Consensus       102 ~~i~~Lls~gad~~~~n~---~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li-~~~  177 (929)
T KOG0510|consen  102 DKIQVLLSYGADTPLRNL---NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELI-NKG  177 (929)
T ss_pred             HHHHHHHhcCCCCChhhh---hccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHH-hcC
Confidence            578999999999999886   5557799999988765   889999999999999999999999999999778888 889


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCcccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~  142 (389)
                      +++...|.+|+.|+|.|++.|..++.+..+. +|......+|.-|++|.||||.|+..|+.+..+
T Consensus       178 a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk  242 (929)
T KOG0510|consen  178 ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLK  242 (929)
T ss_pred             CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHH
Confidence            9999999999999999999999999999887 343334459999999999999999999988774

>PHA02798 ankyrin-like protein; Provisional

Probab=99.80  E-value=9.9e-20  Score=182.57  Aligned_cols=107  Identities=19%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC------ChhhHhhcCCCCCcCCCCCCcHHHHHHHcCc---HHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP------NASSVDQKGIGESSANDNAETPLFLATKSGC---IEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~------~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~---~~~v~~   72 (389)
                      +++++|+++|+|+|.+|.   .+.+|||.|+..+      .+++|+++|+|++.+|.+|.||||+|++.|+   .+++++
T Consensus        90 ~iv~~Ll~~GadiN~~d~---~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~  166 (489)
T PHA02798         90 DIVKILIENGADINKKNS---DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKL  166 (489)
T ss_pred             HHHHHHHHCCCCCCCCCC---CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHH
Confidence            789999999999999987   4557788777553      3448889999999999999999999999887   899999


Q ss_pred             HHHHCCCCccccc-cCCChHHHHHHHh----CChHHHHHHHccCC
Q 016455           73 IFNVYPQAVEHID-DEGRNILHVAIKY----RQLEIFELVVQMEV  112 (389)
Q Consensus        73 Ll~~~~~~~~~~d-~~G~t~Lh~A~~~----~~~~iv~~Ll~~g~  112 (389)
                      |+ +.|++++.+| ..|.||||.++.+    ++.+++++|+++|+
T Consensus       167 Ll-~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        167 LL-EKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HH-HhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            88 5567666553 3455666655543    24555555555554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=1.7e-19  Score=147.47  Aligned_cols=154  Identities=19%  Similarity=0.210  Sum_probs=119.1

Q ss_pred             cHHHHHccCCCChh---hHhhcCCC-CCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIG-ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~-~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      ...+.+|+..+.+.   .|++..++ +|.+|.+|.||||.|+.+|+.++++.|+ ..|++.+.+...||||||-||...+
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccc
Confidence            34456777766543   56665555 5999999999999999999999999999 8899999999999999999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCCh
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tp  180 (389)
                      .+++.+|+++|++    +|++.+...||||+|+...+....     ..++++     ...+.       ...+|+.+.||
T Consensus       143 ~~va~~LLqhgaD----VnA~t~g~ltpLhlaa~~rn~r~t-----~~~Ll~-----dryi~-------pg~~nn~eeta  201 (228)
T KOG0512|consen  143 FEVAGRLLQHGAD----VNAQTKGLLTPLHLAAGNRNSRDT-----LELLLH-----DRYIH-------PGLKNNLEETA  201 (228)
T ss_pred             hhHHHHHHhccCc----ccccccccchhhHHhhcccchHHH-----HHHHhh-----ccccC-------hhhhcCccchH
Confidence            9999999999999    999999999999999977653322     011111     01111       35678999999


Q ss_pred             HHHHhhh--hhhhHHhhHHHHH
Q 016455          181 EELFATA--NNELRTQSKEWLK  200 (389)
Q Consensus       181 l~la~~~--~~~~~~~~~~~~~  200 (389)
                      +++|.+.  ...+-+..++.+.
T Consensus       202 ~~iARRT~~s~~lfe~~e~~~~  223 (228)
T KOG0512|consen  202 FDIARRTSMSHYLFEIVEGCMN  223 (228)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhh
Confidence            9999876  3334444444443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.79  E-value=4.4e-19  Score=181.84  Aligned_cols=160  Identities=16%  Similarity=0.133  Sum_probs=96.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHc---cCCC---ChhhHhhcCCCCCcCCCCCCcHHHHHHHcCcH--------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRY---GANP---NASSVDQKGIGESSANDNAETPLFLATKSGCI--------   67 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a---~~~~---~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~--------   67 (389)
                      +.++.|+.+|..++.+|.+   +.+|||.|   +..+   .+++|+++|++++.+|..|+||||.|+..|+.        
T Consensus        13 ~~~~~l~~~~~~~~~~d~~---g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         13 DELKQMLRDRDPNDTRNQF---KNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHhccCcccccCCC---CCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            4677888888888777764   44667764   3334   34588889999988888899999988876653        


Q ss_pred             ---------------------------HHHHHHHHHCCCCccccccCCChHHHHHH--HhCChHHHHHHHccCCcccccc
Q 016455           68 ---------------------------EIVKEIFNVYPQAVEHIDDEGRNILHVAI--KYRQLEIFELVVQMEVPMRRLV  118 (389)
Q Consensus        68 ---------------------------~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~--~~~~~~iv~~Ll~~g~~~~~~~  118 (389)
                                                 +++++|+ ..|+++|.+|.+|+||||.|+  .+|+.+++++|+++|++    +
T Consensus        90 ~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll-~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~----v  164 (661)
T PHA02917         90 ALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLV-EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS----V  164 (661)
T ss_pred             HHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHH-HcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC----c
Confidence                                       3444444 445555555555555555332  34455555555555555    4


Q ss_pred             ccccc---CC-----------cccchhcccc-----------CCCcccccCCChhHHhhHHHHHHHHHHhhc-chhhhhh
Q 016455          119 RKIDN---GG-----------NTLLHMTGIK-----------RSDYVPEKMEGPALVLQEELLWYERVEEVS-IPHFRNH  172 (389)
Q Consensus       119 ~~~d~---~G-----------~TpLh~A~~~-----------~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~-~~~~~~~  172 (389)
                      |.+|.   .|           .||||+|+..           ++.+++                    +.+. ....++.
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv--------------------~~Li~~Gadvn~  224 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV--------------------KCLINHGIKPSS  224 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH--------------------HHHHHCCCCccc
Confidence            43322   12           3555555431           111111                    1111 1122688


Q ss_pred             ccCCCCChHHHHhhhhh
Q 016455          173 RNNMGFTPEELFATANN  189 (389)
Q Consensus       173 ~n~~g~Tpl~la~~~~~  189 (389)
                      +|.+|.||+|+|.+.+.
T Consensus       225 ~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        225 IDKNYCTALQYYIKSSH  241 (661)
T ss_pred             CCCCCCcHHHHHHHcCC
Confidence            89999999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.3e-19  Score=155.17  Aligned_cols=124  Identities=12%  Similarity=0.120  Sum_probs=105.8

Q ss_pred             CCCCCccccccCCCCcHHHHHccCCCChh-------hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHH---HHHHHHHCCC
Q 016455           10 RDTSWEITDSFQDQSKPKIHRYGANPNAS-------SVDQKGIGESSANDNAETPLFLATKSGCIEI---VKEIFNVYPQ   79 (389)
Q Consensus        10 ~ga~vn~~d~~~~~~~~~lh~a~~~~~~~-------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~---v~~Ll~~~~~   79 (389)
                      +|+|++..+.   .....+|.|+..+.++       .|.+.|++++.+|.+|+||||+|+..|+.+.   +++|+ ..|+
T Consensus         9 ~~~~~~~~~~---~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Ga   84 (166)
T PHA02743          9 NNLGAVEIDE---DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGA   84 (166)
T ss_pred             cchHHhhhcc---CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCC
Confidence            5677776775   3335688888888763       4567899999999999999999999988654   78888 7899


Q ss_pred             Cccccc-cCCChHHHHHHHhCChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCccc
Q 016455           80 AVEHID-DEGRNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        80 ~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +++.+| ..|+||||+|+..++.+++++|++ .|++    ++.+|.+|+||||+|+..++.+++
T Consensus        85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN----LGAINYQHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC----ccCcCCCCCCHHHHHHHcCCHHHH
Confidence            999998 589999999999999999999995 7988    999999999999999999887665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=149.55  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=105.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC------hhhHhhcCCCCCcCC-CCCCcHHHHHHHcCcHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN------ASSVDQKGIGESSAN-DNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~------~~~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      +++++|++.|+++|.+|.   .+.+++|+|+..+.      +++|+++|+++|.+| ..|.||||+|+..|+.+++++|+
T Consensus        38 ~~~~~l~~~g~~~~~~d~---~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll  114 (166)
T PHA02743         38 EVAPFISGDGHLLHRYDH---HGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLC  114 (166)
T ss_pred             HHHHHHhhcchhhhccCC---CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            567788899999988886   55688999887654      468999999999998 58999999999999999999999


Q ss_pred             HHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCc
Q 016455           75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~  126 (389)
                      +..+++++.+|..|+||||+|+..++.+++++|+++|++    ++.++..|.
T Consensus       115 ~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~  162 (166)
T PHA02743        115 RQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV----CDDPLSIGL  162 (166)
T ss_pred             hccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcccCCc
Confidence            557999999999999999999999999999999999998    888888775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.77  E-value=7.4e-19  Score=183.23  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=131.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|++.++..+...   +.+++++|.++..+.+.   .++++|++++.++.+|.||||.|+.+|+.++|++|+ ++|
T Consensus       488 ~~~~llle~~~~~~~~~---~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL-e~g  563 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDA---KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL-EHG  563 (1143)
T ss_pred             hHHHHhhhcCCccCccc---hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhh-hCC
Confidence            56666777775555444   36667777777777655   778899999999999999999999999999999999 899


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      ++++.+|+.|+||||.|+..|+.+|+++|+++|++    +|..|.+|.||||+|+..|+..+++.+...           
T Consensus       564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~~~~k~l~~~-----------  628 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYLSVVKLLKVV-----------  628 (1143)
T ss_pred             ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhcccchhhHHHhc-----------
Confidence            99999999999999999999999999999999999    999999999999999999998877222100           


Q ss_pred             HHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                         ............|..|.+|.++..+.
T Consensus       629 ---~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  629 ---TATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             ---cCccccccchhhhhcccChhhHHHHh
Confidence               00001111355677899998887654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.9e-18  Score=177.22  Aligned_cols=130  Identities=16%  Similarity=0.133  Sum_probs=107.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC-----------------------------------C---hhhHhhc
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP-----------------------------------N---ASSVDQK   43 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~-----------------------------------~---~~~Ll~~   43 (389)
                      |++++|+++|++++..+..   +.+|||.|+..+                                   .   +++|+++
T Consensus        49 ~~v~~Ll~~ga~v~~~~~~---g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~  125 (661)
T PHA02917         49 EVVKLLLDSGTNPLHKNWR---QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEH  125 (661)
T ss_pred             HHHHHHHHCCCCccccCCC---CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHc
Confidence            7899999999999888764   445555444322                                   1   3378889


Q ss_pred             CCCCCcCCCCCCcHHHHHH--HcCcHHHHHHHHHHCCCCcccccc---CC-----------ChHHHHHHH----------
Q 016455           44 GIGESSANDNAETPLFLAT--KSGCIEIVKEIFNVYPQAVEHIDD---EG-----------RNILHVAIK----------   97 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~---~G-----------~t~Lh~A~~----------   97 (389)
                      |+|+|.+|.+|+||||.|+  ..|+.+++++|+ +.|++++..|.   .|           .||||+|+.          
T Consensus       126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi-~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  204 (661)
T PHA02917        126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI-ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR  204 (661)
T ss_pred             CCCCCccCCCCccHHHHHHHccCCCHHHHHHHH-HcCCCccccccccccccccccccccccccHHHHHHhhccccccccc
Confidence            9999999999999999654  578999999999 78999986654   34           599999986          


Q ss_pred             -hCChHHHHHHHccCCcccccccccccCCcccchhccccCCCc
Q 016455           98 -YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY  139 (389)
Q Consensus        98 -~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~  139 (389)
                       +++.+++++|++.|++    +|.+|.+|+||||+|++.++.+
T Consensus       205 ~~~~~eiv~~Li~~Gad----vn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        205 AYVRPEVVKCLINHGIK----PSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             ccCcHHHHHHHHHCCCC----cccCCCCCCcHHHHHHHcCCCc
Confidence             4689999999999999    9999999999999999999863

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=1.5e-18  Score=149.15  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CCcHHHHHccCCCChh---hHh------hcCCCCCcCCCCCCcHHHHHHHcCc----HHHHHHHHHHCCCCcccccc-CC
Q 016455           23 QSKPKIHRYGANPNAS---SVD------QKGIGESSANDNAETPLFLATKSGC----IEIVKEIFNVYPQAVEHIDD-EG   88 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll------~~ga~~n~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~-~G   88 (389)
                      .+.++||.|+..|..+   .|+      ..|++++.+|..|+||||+|+..|+    .++++.|+ ..|++++.+|. +|
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll-~~gadin~~~~~~g   98 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI-ELGADINAQEMLEG   98 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH-HcCCCCCCCCcCCC
Confidence            3445566666666554   221      2245666666666666666666666    35566666 45666666653 66


Q ss_pred             ChHHHHHHHhCChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCccc
Q 016455           89 RNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        89 ~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +||||+|+..++.+++++|++ .|++    ++.+|.+|+||||+|+..++.+++
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~----~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGID----LHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC----CCcCCCCCCCHHHHHHHCCCHHHH
Confidence            666666666666666666665 3555    666666666666666666554443

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=1e-18  Score=150.27  Aligned_cols=90  Identities=21%  Similarity=0.430  Sum_probs=49.6

Q ss_pred             CcCCCCCCcHHHHHHHcCcHHHHHHHHHH-----CCCCccccccCCChHHHHHHHhCC----hHHHHHHHccCCcccccc
Q 016455           48 SSANDNAETPLFLATKSGCIEIVKEIFNV-----YPQAVEHIDDEGRNILHVAIKYRQ----LEIFELVVQMEVPMRRLV  118 (389)
Q Consensus        48 n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~-----~~~~~~~~d~~G~t~Lh~A~~~~~----~~iv~~Ll~~g~~~~~~~  118 (389)
                      +.+|..|.||||+|++.|+.++++.|+..     .+++++.+|..|+||||+|+..|+    .+++++|++.|++    +
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----i   90 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----I   90 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----C
Confidence            34455566666666666666655555321     134555555556666666665555    3555555555555    5


Q ss_pred             ccccc-CCcccchhccccCCCccc
Q 016455          119 RKIDN-GGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 ~~~d~-~G~TpLh~A~~~~~~~~~  141 (389)
                      |.+|. +|+||||+|+..++.+++
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv  114 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLA  114 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHH
Confidence            55553 566666666555555444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=2.4e-18  Score=159.10  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CCCcHHHHHccCCCCh---hhHhhcCCCCCcCC----CCCCcHHHHHHHcCcHHHHHHHHHHCCCCcccc-ccCCChHHH
Q 016455           22 DQSKPKIHRYGANPNA---SSVDQKGIGESSAN----DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHI-DDEGRNILH   93 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d----~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~G~t~Lh   93 (389)
                      +...+++|.|+..+..   +.|+++|+|+|.++    ..|.||||+|+..|+.+++++|+ ++|++++.+ +..|.||||
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKITPLY  109 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCCHHH
Confidence            3445678887776654   48999999999874    58999999999999999999999 789999986 468999999


Q ss_pred             HHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           94 VAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        94 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +|+..++.+++++|++.|++    ++.+|.+|.||||+|++.++.++.
T Consensus       110 ~Aa~~~~~eivklLL~~GAd----in~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        110 ISVLHGCLKCLEILLSYGAD----INIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHhCChhHH
Confidence            99999999999999999999    999999999999999987765543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=3.4e-18  Score=162.44  Aligned_cols=159  Identities=22%  Similarity=0.264  Sum_probs=130.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHH---
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN---   75 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~---   75 (389)
                      +-++.|+..|+++|..+.   .+++++|.++..++   +++|+++|+++|..|..|+||||.|+..|+..++++|++   
T Consensus        54 ~ev~~ll~~ga~~~~~n~---DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA  130 (527)
T KOG0505|consen   54 EEVRKLLNRGASPNLCNV---DGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA  130 (527)
T ss_pred             HHHHHHhccCCCccccCC---ccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence            457889999999988886   55677887776655   459999999999999999999999999999999999985   


Q ss_pred             -------------------------------------------------------HCCCCccccccCCChHHHHHHHhCC
Q 016455           76 -------------------------------------------------------VYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        76 -------------------------------------------------------~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                                                                             ..|...+.++..|.|.||+|+.+|.
T Consensus       131 ~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy  210 (527)
T KOG0505|consen  131 NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY  210 (527)
T ss_pred             hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH
Confidence                                                                   1233344455568999999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCCh
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tp  180 (389)
                      .++.++|++.|.+    ++.+|.+|+||||.|+..+..+..+      ++.+.+.             ..+.++..|+||
T Consensus       211 ~e~~~lLl~ag~~----~~~~D~dgWtPlHAAA~Wg~~~~~e------lL~~~ga-------------~~d~~t~~g~~p  267 (527)
T KOG0505|consen  211 TEVAALLLQAGYS----VNIKDYDGWTPLHAAAHWGQEDACE------LLVEHGA-------------DMDAKTKMGETP  267 (527)
T ss_pred             HHHHHHHHHhccC----cccccccCCCcccHHHHhhhHhHHH------HHHHhhc-------------ccchhhhcCCCC
Confidence            9999999999999    9999999999999999998877662      1111111             147788899999


Q ss_pred             HHHHhh
Q 016455          181 EELFAT  186 (389)
Q Consensus       181 l~la~~  186 (389)
                      ++++.+
T Consensus       268 ~dv~de  273 (527)
T KOG0505|consen  268 LDVADE  273 (527)
T ss_pred             ccchhh
Confidence            998876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.74  E-value=5.1e-18  Score=179.80  Aligned_cols=139  Identities=15%  Similarity=0.195  Sum_probs=116.7

Q ss_pred             CcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           24 SKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      ..+++|.|+..|+.+   .|+++|+|+|..|.+|+||||+|+.+|+.++++.|+ +.|+++|.+|.+|+||||.|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            346688888888755   788999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCCh
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tp  180 (389)
                      .+++++|++.++.    .+  +..|.++||.|+..|+.++++      ..+..+             ..++.+|.+|.||
T Consensus       604 ~~iv~~L~~~~~~----~~--~~~~~~~L~~Aa~~g~~~~v~------~Ll~~G-------------adin~~d~~G~Tp  658 (823)
T PLN03192        604 HKIFRILYHFASI----SD--PHAAGDLLCTAAKRNDLTAMK------ELLKQG-------------LNVDSEDHQGATA  658 (823)
T ss_pred             HHHHHHHHhcCcc----cC--cccCchHHHHHHHhCCHHHHH------HHHHCC-------------CCCCCCCCCCCCH
Confidence            9999999988754    22  356789999999999987762      111111             1157889999999


Q ss_pred             HHHHhhhh
Q 016455          181 EELFATAN  188 (389)
Q Consensus       181 l~la~~~~  188 (389)
                      +|+|++.+
T Consensus       659 Lh~A~~~g  666 (823)
T PLN03192        659 LQVAMAED  666 (823)
T ss_pred             HHHHHHCC
Confidence            99998754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.74  E-value=2.4e-18  Score=146.03  Aligned_cols=165  Identities=14%  Similarity=0.055  Sum_probs=127.5

Q ss_pred             HHHHhCCCCCccccccCCCCcHHHHHccCCCChhh-HhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccc
Q 016455            5 RFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASS-VDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH   83 (389)
Q Consensus         5 ~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~~-Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   83 (389)
                      ..++.+|+..|..+-   .+.+++.++.++..++. ++.....+|..|+.|.|||.+|+.+|++++|++|+ ..|++++.
T Consensus       113 sttltN~~rgnevs~---~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~  188 (296)
T KOG0502|consen  113 STTLTNGARGNEVSL---MPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDA  188 (296)
T ss_pred             eeeecccccCCcccc---ccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhh
Confidence            345556666665554   44455555555555442 22234567899999999999999999999999999 88999999


Q ss_pred             cccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHh
Q 016455           84 IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEE  163 (389)
Q Consensus        84 ~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~  163 (389)
                      ..+...++|.+|+..|..++|++|+.++.|    +|..|.+|-|||-+|++.++..+++.+..      .          
T Consensus       189 lgk~resALsLAt~ggytdiV~lLL~r~vd----VNvyDwNGgTpLlyAvrgnhvkcve~Ll~------s----------  248 (296)
T KOG0502|consen  189 LGKYRESALSLATRGGYTDIVELLLTREVD----VNVYDWNGGTPLLYAVRGNHVKCVESLLN------S----------  248 (296)
T ss_pred             hhhhhhhhHhHHhcCChHHHHHHHHhcCCC----cceeccCCCceeeeeecCChHHHHHHHHh------c----------
Confidence            999999999999999999999999999998    99999999999999999999888732211      1          


Q ss_pred             hcchhhhhhccCCCCChHHHHhhhhhhhHHhhH
Q 016455          164 VSIPHFRNHRNNMGFTPEELFATANNELRTQSK  196 (389)
Q Consensus       164 ~~~~~~~~~~n~~g~Tpl~la~~~~~~~~~~~~  196 (389)
                         ...++..+..|.+++++|........++..
T Consensus       249 ---GAd~t~e~dsGy~~mdlAValGyr~Vqqvi  278 (296)
T KOG0502|consen  249 ---GADVTQEDDSGYWIMDLAVALGYRIVQQVI  278 (296)
T ss_pred             ---CCCcccccccCCcHHHHHHHhhhHHHHHHH
Confidence               112567788999999999887666555443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=2.2e-18  Score=151.71  Aligned_cols=124  Identities=22%  Similarity=0.258  Sum_probs=101.9

Q ss_pred             hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccc
Q 016455           39 SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLV  118 (389)
Q Consensus        39 ~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~  118 (389)
                      .|-+..-|.|.-|..|.+|||+||+.|+..+++.|+ ..|+.+|..+....||||+|+.+||-++|+.|+++.+|    +
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~kad----v   93 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----V   93 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcc----c
Confidence            455566778888889999999999999999999999 78899999998889999999999999999999998888    9


Q ss_pred             cccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          119 RKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       119 ~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      |+.+..|+|||||||..|...+.+.+..                   ....++.-|++|.||+|.+..
T Consensus        94 navnehgntplhyacfwgydqiaedli~-------------------~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLIS-------------------CGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHh-------------------ccceeeecccCCCCchhhhch
Confidence            9999999999999999887666521110                   111257889999999987654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=5.6e-18  Score=170.28  Aligned_cols=133  Identities=12%  Similarity=0.218  Sum_probs=110.9

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCC-------ChhhHhhcCC--CCCcCCCCCCcHHHH---HHHcC---
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP-------NASSVDQKGI--GESSANDNAETPLFL---ATKSG---   65 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~-------~~~~Ll~~ga--~~n~~d~~G~tpLh~---Aa~~g---   65 (389)
                      .|++++|+++||++|.. .   .+.+|||.|+..+       .+++|+++|+  ++|.+|.+|.||||.   |...+   
T Consensus       359 ieIvelLIs~GAdIN~k-~---~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        359 IPILRCMLDNGATMDKT-T---DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             HHHHHHHHHCCCCCCcC-C---CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            37899999999999974 2   5568899776544       3459999998  689999999999994   33332   


Q ss_pred             ------cHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc-CCcccchhcccc--C
Q 016455           66 ------CIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMTGIK--R  136 (389)
Q Consensus        66 ------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A~~~--~  136 (389)
                            ..+++++|+ .+|+++|.+|..|+||||+|+..++.+++++|+++|++    +|.+|. .|+||||+|+..  +
T Consensus       435 ~~~e~~~~~ivk~LI-s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd----IN~~d~~~g~TaL~~Aa~~~~~  509 (672)
T PHA02730        435 HCYETILIDVFDILS-KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS----VNTTSRSIINTAIQKSSYRREN  509 (672)
T ss_pred             cccchhHHHHHHHHH-hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCcCCcCHHHHHHHhhcC
Confidence                  235789999 89999999999999999999999999999999999999    999997 599999999874  4


Q ss_pred             CCcccc
Q 016455          137 SDYVPE  142 (389)
Q Consensus       137 ~~~~~~  142 (389)
                      +.++++
T Consensus       510 ~~eIv~  515 (672)
T PHA02730        510 KTKLVD  515 (672)
T ss_pred             cHHHHH
Confidence            555553

>PHA02730 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.1e-17  Score=166.18  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=105.4

Q ss_pred             HHHHccCCC------ChhhHhhcCCCCCcCCCCCCcHHHHHHHcCc----HHHHHHHHHHCCC--CccccccCCChHHHH
Q 016455           27 KIHRYGANP------NASSVDQKGIGESSANDNAETPLFLATKSGC----IEIVKEIFNVYPQ--AVEHIDDEGRNILHV   94 (389)
Q Consensus        27 ~lh~a~~~~------~~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~--~~~~~d~~G~t~Lh~   94 (389)
                      .||.+-..+      .+++|+++|||+|.. ..|.||||+|+..++    .+++++|+ .+|+  +++.+|..|+||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLI-s~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIV-ENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHH-HcCCCccccccccCCCchHhH
Confidence            566665544      245999999999985 789999999998875    89999999 5665  689999999999994


Q ss_pred             ---HHHhC---------ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHH
Q 016455           95 ---AIKYR---------QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVE  162 (389)
Q Consensus        95 ---A~~~~---------~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~  162 (389)
                         |...+         ..+++++|+++|++    +|.+|..|+||||+|+..++.++++      +++..+        
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive------~LI~~G--------  485 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFAR------RLLEYG--------  485 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHH------HHHHCC--------
Confidence               33332         23579999999999    9999999999999999988766651      111111        


Q ss_pred             hhcchhhhhhccC-CCCChHHHHhhh
Q 016455          163 EVSIPHFRNHRNN-MGFTPEELFATA  187 (389)
Q Consensus       163 ~~~~~~~~~~~n~-~g~Tpl~la~~~  187 (389)
                           ..++.+|+ .|+||++.++..
T Consensus       486 -----AdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        486 -----ASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             -----CCCCCCCCcCCcCHHHHHHHh
Confidence                 11567786 599999998763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=8.7e-18  Score=175.32  Aligned_cols=161  Identities=21%  Similarity=0.303  Sum_probs=120.0

Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHccCCC-Chh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHH---
Q 016455            3 LARFLIRRDTSWEITDSFQDQSKPKIHRYGANP-NAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN---   75 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~-~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~---   75 (389)
                      +++.++++|+++|..+..   +.+++|.++..+ ..+   .+++.|+++|.....|.||||+|+..|+.++++.+++   
T Consensus       422 ~v~l~l~~gA~~~~~~~l---G~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~  498 (1143)
T KOG4177|consen  422 VVKLLLKRGASPNAKAKL---GYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGA  498 (1143)
T ss_pred             eEEEEeccCCChhhHhhc---CCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCC
Confidence            445566666666666653   345566666555 222   5556666666666666666666666666666665554   


Q ss_pred             -----------------------------HCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCc
Q 016455           76 -----------------------------VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        76 -----------------------------~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~  126 (389)
                                                   ..|++++.++..|.||||.|+.+|+.++|++|+++|++    ++.+|+.|+
T Consensus       499 ~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd----v~ak~~~G~  574 (1143)
T KOG4177|consen  499 NDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD----VNAKDKLGY  574 (1143)
T ss_pred             ccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc----ccccCCCCC
Confidence                                         45778888999999999999999999999999999999    999999999


Q ss_pred             ccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          127 TLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       127 TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ||||.|+..|+.+++      .++++.+.             .+|..+.+|.||+++|.+...
T Consensus       575 TPLH~Aa~~G~~~i~------~LLlk~GA-------------~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  575 TPLHQAAQQGHNDIA------ELLLKHGA-------------SVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             ChhhHHHHcChHHHH------HHHHHcCC-------------CCCcccccCcchhHHHHHhcc
Confidence            999999999988877      22222221             268899999999999987653

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.71  E-value=7.5e-18  Score=143.00  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             CCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCcccccc
Q 016455           10 RDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD   86 (389)
Q Consensus        10 ~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   86 (389)
                      ....+|..|+   .+.+||.||+..|.+.   +|++.|+|++...+...++|.+|++.|..++|++|+ .++.|+|.-|-
T Consensus       149 ~~n~VN~~De---~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL-~r~vdVNvyDw  224 (296)
T KOG0502|consen  149 VNNKVNACDE---FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLL-TREVDVNVYDW  224 (296)
T ss_pred             hhccccCccc---cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHH-hcCCCcceecc
Confidence            3456788886   7789999999998765   999999999999999999999999999999999999 88999999999


Q ss_pred             CCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCC
Q 016455           87 EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        87 ~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~  138 (389)
                      +|-|||-+|++.+|.+|++.|++.|++    ++..|..|++++.+|+..|+.
T Consensus       225 NGgTpLlyAvrgnhvkcve~Ll~sGAd----~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  225 NGGTPLLYAVRGNHVKCVESLLNSGAD----VTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CCCceeeeeecCChHHHHHHHHhcCCC----cccccccCCcHHHHHHHhhhH
Confidence            999999999999999999999999999    999999999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=5.3e-18  Score=143.53  Aligned_cols=115  Identities=10%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             CCCcHHHHHccCCCChh-hHhhcCCC-------CCcCCCCCCcHHHHHHHcCcHH---HHHHHHHHCCCCccccc-cCCC
Q 016455           22 DQSKPKIHRYGANPNAS-SVDQKGIG-------ESSANDNAETPLFLATKSGCIE---IVKEIFNVYPQAVEHID-DEGR   89 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~~-~Ll~~ga~-------~n~~d~~G~tpLh~Aa~~g~~~---~v~~Ll~~~~~~~~~~d-~~G~   89 (389)
                      ..+.+|||+|+..|.+. ++..++..       ++.+|.+|+||||+|+..|+.+   +++.|+ ..|++++.+| ..|+
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll-~~gadin~~~~~~g~   93 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM-EWGADINGKERVFGN   93 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH-HcCCCccccCCCCCC
Confidence            36778899999998854 43333332       2356889999999999999874   678888 7899999998 4999


Q ss_pred             hHHHHHHHhCChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCccc
Q 016455           90 NILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        90 t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ||||+|+..++.+++++|++ .|++    ++.+|..|+||||+|+..++.+++
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d----~n~~~~~g~tpL~~A~~~~~~~i~  142 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVN----MEILNYAFKTPYYVACERHDAKMM  142 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCC----CccccCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999997 4888    999999999999999998887666

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=1.6e-17  Score=174.77  Aligned_cols=126  Identities=22%  Similarity=0.182  Sum_probs=89.7

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccc--------------cCCChHHHHHHHhCChHHHHHHHccCCccccc
Q 016455           52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID--------------DEGRNILHVAIKYRQLEIFELVVQMEVPMRRL  117 (389)
Q Consensus        52 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~  117 (389)
                      ..|.||||+|+.+|+.++++.|+ ++|++++.++              ..|+||||.|+..|+.+++++|++.|++    
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL-~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad----  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLL-ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD----  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc----
Confidence            46899999999999999999999 6788888653              3589999999999999999999999988    


Q ss_pred             ccccccCCcccchhccccCCCcccccCCChhHHhhHH-HHHHHH-HHh-hcchhhhhhccCCCCChHHHHhhhh
Q 016455          118 VRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEE-LLWYER-VEE-VSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       118 ~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~-~~~~~~-v~~-~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      +|.+|..|+||||+|+..+.....      ...+... ...... ... ..+....+.+|++|.||+++|++.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~------~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAE------YEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHH------HHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            899999999999999987532111      0000000 000000 011 1111223678999999999998754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.69  E-value=1.4e-16  Score=158.82  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=53.5

Q ss_pred             CHHHHHHHhCCCCCccccc---------------------------------cCCCCcHHHHHccCCC----------Ch
Q 016455            1 MELARFLIRRDTSWEITDS---------------------------------FQDQSKPKIHRYGANP----------NA   37 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~---------------------------------~~~~~~~~lh~a~~~~----------~~   37 (389)
                      .|++++|+++|||++..+.                                 +...+.+|||.|...+          .+
T Consensus       119 ~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~  198 (631)
T PHA02792        119 VDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVI  198 (631)
T ss_pred             hHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHH
Confidence            4788888888887543222                                 1223678888776655          23


Q ss_pred             hhHhhcCCCCCcCCCCCCcHHHHHHHcC--cHHHHHHHHH
Q 016455           38 SSVDQKGIGESSANDNAETPLFLATKSG--CIEIVKEIFN   75 (389)
Q Consensus        38 ~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~   75 (389)
                      +.|+++|++++.+|..|.||||+|+.+.  +.|+++.|++
T Consensus       199 k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        199 NYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             HHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence            4888899999888888999999888777  5666666654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.69  E-value=1.6e-16  Score=147.09  Aligned_cols=121  Identities=10%  Similarity=0.116  Sum_probs=103.1

Q ss_pred             HHHHHHHhCCCCCccccc-cCCCCcHHHHHccCCCChh---hHhhcCCCCCcCC-CCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDS-FQDQSKPKIHRYGANPNAS---SVDQKGIGESSAN-DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~-~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++|+|+|.++. ++..+.+|||.|+..+..+   +|+++|+|+|.++ ..|.||||+|+..|+.++++.|+ .
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL-~  125 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILL-S  125 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHH-H
Confidence            789999999999998763 2235678899998887755   8999999999864 57999999999999999999999 8


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhc
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A  132 (389)
                      .|++++.+|..|+||||+|++.++.+++..+...         ..|..+.+|++++
T Consensus       126 ~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  172 (300)
T PHA02884        126 YGADINIQTNDMVTPIELALMICNNFLAFMICDN---------EISNFYKHPKKIL  172 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC---------cccccccChhhhh
Confidence            8999999999999999999999998887665422         2467788898875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=1.8e-16  Score=143.89  Aligned_cols=134  Identities=16%  Similarity=0.176  Sum_probs=110.7

Q ss_pred             HHHHHHHhCC-CCCccccccCCCCcHHHHHccCCCC--hh---hHhhcCCCCCcCCC-CCCcHHHHHHHcCcHHHHHHHH
Q 016455            2 ELARFLIRRD-TSWEITDSFQDQSKPKIHRYGANPN--AS---SVDQKGIGESSAND-NAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~g-a~vn~~d~~~~~~~~~lh~a~~~~~--~~---~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      ++|+.||+.| +++|.+++.|+++......|.-...  .+   .|-+ -.|+|.+-. .|.|+|++|+.+|+.++|+.||
T Consensus       282 ~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~-mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LL  360 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFK-MGDVNAKASQHGQTALMLAVSHGRVDMVKALL  360 (452)
T ss_pred             HHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHh-ccCcchhhhhhcchhhhhhhhcCcHHHHHHHH
Confidence            6899999988 7899999888876654444433222  22   3333 467887754 5999999999999999999999


Q ss_pred             HHCCCCccccccCCChHHHHHHHhCChHHHHHHHcc-CCcccccccccccCCcccchhccccCCCccc
Q 016455           75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM-EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                       .||+|+|.+|.+|-|+|+.|+++||.+++++|+.. ++|    ....|.+|-|+|.+|...|+.++.
T Consensus       361 -acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd----~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  361 -ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD----ISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             -HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc----ceeecCCCchhhhhHHhcCchHHH
Confidence             99999999999999999999999999999999975 455    888999999999999999998876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-16  Score=140.81  Aligned_cols=114  Identities=22%  Similarity=0.295  Sum_probs=104.2

Q ss_pred             CCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCC
Q 016455           12 TSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEG   88 (389)
Q Consensus        12 a~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G   88 (389)
                      -|.|.-|   +.+..|||+++..|.+.   .|+.+|+.+|..+....||||+|+.+||.++|+.|+ +..+|+|..+..|
T Consensus        25 hdln~gd---dhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll-~~kadvnavnehg  100 (448)
T KOG0195|consen   25 HDLNVGD---DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL-SRKADVNAVNEHG  100 (448)
T ss_pred             ccccccc---ccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH-HHhcccchhhccC
Confidence            4455555   57889999999999765   899999999999999999999999999999999999 7789999999999


Q ss_pred             ChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcc
Q 016455           89 RNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        89 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      +||||+||..|...+.+-|+..|+-    ++.-+++|.|||..|-
T Consensus       101 ntplhyacfwgydqiaedli~~ga~----v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAA----VNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccce----eeecccCCCCchhhhc
Confidence            9999999999999999999999998    9999999999998875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.65  E-value=3.9e-16  Score=155.61  Aligned_cols=123  Identities=19%  Similarity=0.213  Sum_probs=105.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCC--CcHHHHHHHcCcH---HHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNA--ETPLFLATKSGCI---EIVKEI   73 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G--~tpLh~Aa~~g~~---~~v~~L   73 (389)
                      |++++|+++|++++ ++    .....++.|+..+..   ++|+++|||+|.+|.+|  .||||.|+..+..   ++++.|
T Consensus       322 eiIK~LId~Ga~~~-r~----~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklL  396 (631)
T PHA02792        322 NVIKCMIDEGATLY-RF----KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLC  396 (631)
T ss_pred             HHHHHHHHCCCccc-cC----CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHH
Confidence            78999999999975 22    344557778766654   49999999999998775  6999998877654   357877


Q ss_pred             HHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccc
Q 016455           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      + .+|+++|.+|..|+||||+|+..++.+++++|+++|++    +|.+|..|+||||+|+.
T Consensus       397 I-s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD----IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        397 K-PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD----INITTKYGSTCIGICVI  452 (631)
T ss_pred             H-hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH
Confidence            8 88999999999999999999999999999999999999    99999999999999975

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.65  E-value=1.7e-16  Score=143.98  Aligned_cols=148  Identities=18%  Similarity=0.197  Sum_probs=119.1

Q ss_pred             CccccccCCCCcHHHHHccCCCCh---hhHhhcC-CCCCcCCCCCCcHHHHHHHc-----CcHHHHHHHHHHCCCCcccc
Q 016455           14 WEITDSFQDQSKPKIHRYGANPNA---SSVDQKG-IGESSANDNAETPLFLATKS-----GCIEIVKEIFNVYPQAVEHI   84 (389)
Q Consensus        14 vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~g-a~~n~~d~~G~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~   84 (389)
                      ||..|.+|   .++||++....+.   +.|++.| +|+|.++..|.||+++|+..     .+.++|+.|. +.| ++|.+
T Consensus       261 VNlaDsNG---NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF-~mg-nVNaK  335 (452)
T KOG0514|consen  261 VNLADSNG---NTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF-KMG-DVNAK  335 (452)
T ss_pred             hhhhcCCC---CeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH-hcc-Ccchh
Confidence            66777744   4667877766654   4777776 78899999999999999853     5678999998 555 57765


Q ss_pred             -ccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHh
Q 016455           85 -DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEE  163 (389)
Q Consensus        85 -d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~  163 (389)
                       ...|+|+|++|+.+|+.++++.|+..|+|    +|.+|.+|-|+|+.|+++||.+++.      +++            
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAd----VNiQDdDGSTALMCA~EHGhkEivk------lLL------------  393 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGAD----VNIQDDDGSTALMCAAEHGHKEIVK------LLL------------  393 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCC----CccccCCccHHHhhhhhhChHHHHH------HHh------------
Confidence             45899999999999999999999999999    9999999999999999999999882      221            


Q ss_pred             hcchhhhhhccCCCCChHHHHhhhh
Q 016455          164 VSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       164 ~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ..|.-.....|.+|.|++.+|.+..
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcC
Confidence            1222225778999999999998754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.64  E-value=5.5e-16  Score=127.09  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=105.5

Q ss_pred             HHHHHHhCC-CCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            3 LARFLIRRD-TSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         3 ~v~~Ll~~g-a~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      .|+.|++.. -.+|.+|.+++   +|||+|+.++.++   .|+..||+++.+...|+||||.||.-++.+++..|| .+|
T Consensus        78 eV~~lL~e~an~vNtrD~D~Y---TpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL-qhg  153 (228)
T KOG0512|consen   78 EVQRLLSEKANHVNTRDEDEY---TPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL-QHG  153 (228)
T ss_pred             HHHHHHHhccccccccccccc---cHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH-hcc
Confidence            456666654 46889998766   6788888888765   888999999999999999999999999999999999 899


Q ss_pred             CCccccccCCChHHHHHHHhCCh-HHHHHHHc-cCCcccccccccccCCcccchhccccC
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQL-EIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~-~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      +|+|.......||||+|+..++. ..+++|+. .+..    ...+++.+.||+.+|-+.+
T Consensus       154 aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~----pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  154 ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH----PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             CcccccccccchhhHHhhcccchHHHHHHHhhccccC----hhhhcCccchHHHHHHHhh
Confidence            99999999999999999987764 45666654 4444    7778889999999998764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=1.2e-15  Score=116.54  Aligned_cols=86  Identities=27%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             HHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHH
Q 016455           28 IHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        28 lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv  104 (389)
                      ||.|+..+..+   .|++.+.+++.    |.||||+|+..|+.+++++|+ ++|.+++.+|.+|+||||+|+.+|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLL-ENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            57777777665   78888888876    899999999999999999999 78899999999999999999999999999


Q ss_pred             HHHHccCCcccccccccc
Q 016455          105 ELVVQMEVPMRRLVRKID  122 (389)
Q Consensus       105 ~~Ll~~g~~~~~~~~~~d  122 (389)
                      ++|+++|++    ++.+|
T Consensus        76 ~~Ll~~g~~----~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGAD----VNIRN   89 (89)
T ss_dssp             HHHHHTTT-----TTSS-
T ss_pred             HHHHHcCCC----CCCcC
Confidence            999999998    77765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=1.4e-15  Score=160.19  Aligned_cols=156  Identities=14%  Similarity=0.074  Sum_probs=112.7

Q ss_pred             HHHHHHHhC--CCCCccccccCCCCcHHHH-HccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcC---cHHHHHH
Q 016455            2 ELARFLIRR--DTSWEITDSFQDQSKPKIH-RYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSG---CIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~--ga~vn~~d~~~~~~~~~lh-~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g---~~~~v~~   72 (389)
                      +.++.++++  +.++|..|.   .+.+||| .|+..+..+   +|+++|+    .+..|.||||.|+..+   ..++++.
T Consensus        31 ~~v~~lL~~~~~~~in~~d~---~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~  103 (743)
T TIGR00870        31 ASVYRDLEEPKKLNINCPDR---LGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLH  103 (743)
T ss_pred             HHHHHHhccccccCCCCcCc---cchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHH
Confidence            578889988  889888886   5667888 666665543   7888877    6778999999999732   2233333


Q ss_pred             HHHHCCCC------cc----ccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc--------------cCCccc
Q 016455           73 IFNVYPQA------VE----HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID--------------NGGNTL  128 (389)
Q Consensus        73 Ll~~~~~~------~~----~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d--------------~~G~Tp  128 (389)
                      +. ..+.+      .+    ..+..|.||||+|+.+|+.+++++|+++|++    ++.++              ..|+||
T Consensus       104 l~-~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd----v~~~~~~~~~~~~~~~~~~~~g~tp  178 (743)
T TIGR00870       104 LL-AAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS----VPARACGDFFVKSQGVDSFYHGESP  178 (743)
T ss_pred             Hh-hcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC----CCcCcCCchhhcCCCCCcccccccH
Confidence            33 22211      11    1235799999999999999999999999998    66543              369999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ||.|+..++.++++.+      +.             .+..++.+|+.|+||+|+|...+
T Consensus       179 L~~Aa~~~~~~iv~lL------l~-------------~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       179 LNAAACLGSPSIVALL------SE-------------DPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHHHHHhCCHHHHHHH------hc-------------CCcchhhHhhhhhHHHHHHHhhh
Confidence            9999999987776211      11             11125778999999999998763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.57  E-value=5.6e-15  Score=125.00  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             CCcHHHHHccCCCCh------hhHhhcCCCCCcCCC-CCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHH
Q 016455           23 QSKPKIHRYGANPNA------SSVDQKGIGESSAND-NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVA   95 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~------~~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A   95 (389)
                      .+.++||.|+..+..      +.|+++|+++|.+|. +|.||||+|+..|+.++++.|++..+.+++.+|..|+||||+|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            567889999887753      478999999999984 8999999999999999999999556899999999999999999


Q ss_pred             HHhCChHHHHHHHccCCc
Q 016455           96 IKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        96 ~~~~~~~iv~~Ll~~g~~  113 (389)
                      +..|+.+++++|++.|++
T Consensus       134 ~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            999999999999999986

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.53  E-value=4.7e-15  Score=145.97  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=127.1

Q ss_pred             CccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCCh
Q 016455           14 WEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN   90 (389)
Q Consensus        14 vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t   90 (389)
                      +|..|.   .+.+.+|.|+.++..+   +|+++.+-++..|..|.+|||+|++.|+.++++.++ ..++.+|..+..|.|
T Consensus        42 ~n~qd~---~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll-~q~d~~na~~~e~~t  117 (854)
T KOG0507|consen   42 HNLQDY---SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLL-LQTDILNAVNIENET  117 (854)
T ss_pred             ccccCc---cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHH-hcccCCCcccccCcC
Confidence            445554   7788899998887655   889999989999999999999999999999999999 667889999999999


Q ss_pred             HHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhh
Q 016455           91 ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFR  170 (389)
Q Consensus        91 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~  170 (389)
                      |||.|+++||.+++.+|+++|++    .-.+|+++.|+|.+|++.|..++++.+....+..+.          ..+.. .
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~ad----p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~----------~~~~~-~  182 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNAD----PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQS----------SLRVG-D  182 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCC----ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhh----------cccCC-C
Confidence            99999999999999999999999    899999999999999999999988433222222111          11111 3


Q ss_pred             hhccCCCCChHHHHhhhh
Q 016455          171 NHRNNMGFTPEELFATAN  188 (389)
Q Consensus       171 ~~~n~~g~Tpl~la~~~~  188 (389)
                      ..+.-.+-+|+|+|++++
T Consensus       183 ~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  183 IKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             CCCCCCCcCCcchhhhcc
Confidence            455667889999988754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.53  E-value=1.5e-14  Score=142.46  Aligned_cols=190  Identities=16%  Similarity=0.128  Sum_probs=141.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|++..+-++..|.   .+..|+|.|++.|+.+   .++.++..+|..+..|.||||.|+++||.+++.+|+ .++
T Consensus        63 ~is~llle~ea~ldl~d~---kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll-~~~  138 (854)
T KOG0507|consen   63 QISKLLLDYEALLDLCDT---KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLL-KKN  138 (854)
T ss_pred             HHHHHHhcchhhhhhhhc---cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHH-hcC
Confidence            678999999999999985   5556788787777655   788888888999999999999999999999999999 889


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccc----cccccccCCcccchhccccCCCcccccCCC--------
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRR----LVRKIDNGGNTLLHMTGIKRSDYVPEKMEG--------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~----~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~--------  146 (389)
                      ++.-.+|..+.|+|-+|++.|+.++++.|++.......    --..++-.+-+|||+|+++|+.++.+.+..        
T Consensus       139 adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  139 ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             CCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999987432111    123456678999999999999998855422        


Q ss_pred             ----hhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhhhhhhhHHhh
Q 016455          147 ----PALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFATANNELRTQS  195 (389)
Q Consensus       147 ----~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~~~~~~~~~~  195 (389)
                          .+++-.......+.+.-+.. ......+|.+|+|++++..+...+...++
T Consensus       219 t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei  272 (854)
T KOG0507|consen  219 TEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEI  272 (854)
T ss_pred             cccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhh
Confidence                22222221111111111111 11246789999999999877655444333

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.52  E-value=4.9e-14  Score=113.51  Aligned_cols=114  Identities=25%  Similarity=0.387  Sum_probs=102.1

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      .+.+++|.|+..+..+   .|+++|.+.+..|..|.||+|.|+..++.++++.|+ ..+.+++..|..|.||+|+|++.+
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcC
Confidence            4568899998888655   889999999999999999999999999999999999 677788899999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++++|++++.+    .+..|..|.||+|+|...++.+++
T Consensus        85 ~~~~~~~L~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  122 (126)
T cd00204          85 NLDVVKLLLKHGAD----VNARDKDGRTPLHLAAKNGHLEVV  122 (126)
T ss_pred             cHHHHHHHHHcCCC----CcccCCCCCCHHHHHHhcCCHHHH
Confidence            99999999999877    889999999999999988665443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=4e-14  Score=134.92  Aligned_cols=125  Identities=20%  Similarity=0.261  Sum_probs=106.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCC---------------------------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGI---------------------------------   45 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga---------------------------------   45 (389)
                      +|+++|+++|++||..|.   .+.+|+|.|+..+++.   +|+++|+                                 
T Consensus        87 e~v~~l~e~ga~Vn~~d~---e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~g  163 (527)
T KOG0505|consen   87 EMVKFLVENGANVNAQDN---EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQG  163 (527)
T ss_pred             HHHHHHHHhcCCcccccc---ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhc
Confidence            799999999999999997   4446677666666543   4444433                                 


Q ss_pred             --------------------------CCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           46 --------------------------GESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        46 --------------------------~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                                                +.+.++..|.|.||.|+.+|..++.++|+ ..+.+++.+|.+||||||.|+..|
T Consensus       164 i~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl-~ag~~~~~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  164 IDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL-QAGYSVNIKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             ccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH-HhccCcccccccCCCcccHHHHhh
Confidence                                      33344456899999999999999999999 889999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccc
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      +.+++++|+++|++    ++.....|.||+.+|..
T Consensus       243 ~~~~~elL~~~ga~----~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  243 QEDACELLVEHGAD----MDAKTKMGETPLDVADE  273 (527)
T ss_pred             hHhHHHHHHHhhcc----cchhhhcCCCCccchhh
Confidence            99999999999999    99999999999999875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.50  E-value=1.9e-14  Score=109.81  Aligned_cols=75  Identities=27%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             HHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        58 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      ||+|++.|+.++++.|+ +.+.+++.    |+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll-~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLL-EKGADINL----GNTALHYAAENGNLEIVKLLLENGAD----INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHH-HTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC----TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHH-HCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc----ccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999 46776666    99999999999999999999999998    99999999999999999998


Q ss_pred             Cccc
Q 016455          138 DYVP  141 (389)
Q Consensus       138 ~~~~  141 (389)
                      .+++
T Consensus        72 ~~~~   75 (89)
T PF12796_consen   72 LEIV   75 (89)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=2.8e-14  Score=98.74  Aligned_cols=55  Identities=24%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             HhhcC-CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHH
Q 016455           40 VDQKG-IGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVA   95 (389)
Q Consensus        40 Ll~~g-a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A   95 (389)
                      |+++| +++|.+|..|.||||+|+.+|+.+++++|+ +.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            34555 666666666666666666666666666666 66666666666666666665

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.49  E-value=8.8e-13  Score=131.61  Aligned_cols=137  Identities=21%  Similarity=0.206  Sum_probs=113.8

Q ss_pred             HHHHHHHhCCC-CCc-cccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcC---------CC--------------C
Q 016455            2 ELARFLIRRDT-SWE-ITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSA---------ND--------------N   53 (389)
Q Consensus         2 e~v~~Ll~~ga-~vn-~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~---------d~--------------~   53 (389)
                      |+++.|++.-. -+| ..-.+++.+.++||.|..+.+.+   +|++.|||++++         |.              -
T Consensus       160 ~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Yf  239 (782)
T KOG3676|consen  160 ELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYF  239 (782)
T ss_pred             HHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeee
Confidence            55666665421 122 22334578899999998877655   899999999843         11              3


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcc
Q 016455           54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        54 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      |+.||..||.-++.|++++|+ ++|+|++.+|..|+|+||..+.+-..++.+++++.|++  .+...+|++|-|||-+|+
T Consensus       240 GEyPLSfAAC~nq~eivrlLl-~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLL-AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHH-hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHH
Confidence            789999999999999999999 69999999999999999999999999999999999986  667889999999999999


Q ss_pred             ccCCCccc
Q 016455          134 IKRSDYVP  141 (389)
Q Consensus       134 ~~~~~~~~  141 (389)
                      +.|+.++.
T Consensus       317 klGk~emf  324 (782)
T KOG3676|consen  317 KLGKKEMF  324 (782)
T ss_pred             HhhhHHHH
Confidence            99988876

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=1.2e-13  Score=111.30  Aligned_cols=115  Identities=33%  Similarity=0.451  Sum_probs=96.3

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                      .+|.+|.||||.|+..|+.++++.|+ ..+.+.+..|..|.||+|.|+..++.+++++|++.+++    ++..|..|.||
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~~   76 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD----VNARDKDGNTP   76 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCH
Confidence            45678999999999999999999999 77777789999999999999999999999999999987    88889999999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                      +|+|++.++.++++      +.+...             ...+..|..|+||++.+...
T Consensus        77 l~~a~~~~~~~~~~------~L~~~~-------------~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          77 LHLAARNGNLDVVK------LLLKHG-------------ADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HHHHHHcCcHHHHH------HHHHcC-------------CCCcccCCCCCCHHHHHHhc
Confidence            99999998865551      111100             11456788999999998765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=3.6e-14  Score=98.16  Aligned_cols=56  Identities=29%  Similarity=0.398  Sum_probs=34.1

Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhc
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A  132 (389)
                      ||+..+.+++.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence            45444589999999999999999999999999999999999    999999999999997

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.44  E-value=2.4e-13  Score=100.02  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=82.5

Q ss_pred             HHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHH
Q 016455           28 IHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        28 lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv  104 (389)
                      ..|+..+|.++   .....|.|+|..- .|++|||+|+-.|..+++++|+ ..|++++.+|+.|-|||..|+..||.++|
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli-~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLI-SIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHH-HhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            45666666655   4455677887544 7999999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHccCCcccccccccccCCcccchh
Q 016455          105 ELVVQMEVPMRRLVRKIDNGGNTLLHM  131 (389)
Q Consensus       105 ~~Ll~~g~~~~~~~~~~d~~G~TpLh~  131 (389)
                      ++|+++|++    ...+..+|.+.+..
T Consensus        84 klLL~~GAd----rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   84 KLLLQNGAD----RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHcCcc----cceeCCCchhHHhh
Confidence            999999998    66777777766543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=3.9e-13  Score=92.34  Aligned_cols=54  Identities=33%  Similarity=0.548  Sum_probs=45.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHH
Q 016455           54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV  108 (389)
Q Consensus        54 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  108 (389)
                      |+||||+|++.|+.++++.|+ +.+.+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll-~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLL-EHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHH-HTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999 669999999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=4.7e-13  Score=119.30  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=101.2

Q ss_pred             CCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCc-----HHHHHHHHHHCCC---CccccccCCChH
Q 016455           23 QSKPKIHRYGANPN---ASSVDQKGIGESSANDNAETPLFLATKSGC-----IEIVKEIFNVYPQ---AVEHIDDEGRNI   91 (389)
Q Consensus        23 ~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~-----~~~v~~Ll~~~~~---~~~~~d~~G~t~   91 (389)
                      ....++|.++..+.   ++.++..|++++.+|.+|.||||+|+..|+     .++++.|+ ..++   +.+.+|..|+||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL-EAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHH-HcCCCCCCccccCCCCCch
Confidence            45566888855444   458899999999999999999999999999     99999999 6666   777779999999


Q ss_pred             HHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           92 LHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        92 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ||+|+..|+.+++++|++.|++    ++.+|..|.|++|.|+..++.++.
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGAD----PNSRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCC----CcccccCCCcchhhhcccchHHHH
Confidence            9999999999999999999998    899999999999999999887665

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.41  E-value=5.6e-13  Score=133.02  Aligned_cols=155  Identities=23%  Similarity=0.231  Sum_probs=110.7

Q ss_pred             CCCccccccCCCCcHHHHHccCC--CC----hhhHhhcCCC-CC----cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCC
Q 016455           12 TSWEITDSFQDQSKPKIHRYGAN--PN----ASSVDQKGIG-ES----SANDNAETPLFLATKSGCIEIVKEIFNVYPQA   80 (389)
Q Consensus        12 a~vn~~d~~~~~~~~~lh~a~~~--~~----~~~Ll~~ga~-~n----~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   80 (389)
                      ++++.++ .|..|.+.||.|..+  +.    +..|++.-.. +|    .....|.||||+|+.+.+.++|++|+ +.|+|
T Consensus       132 ~~w~~~~-RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl-~~gAD  209 (782)
T KOG3676|consen  132 TDWKLNE-RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLL-AAGAD  209 (782)
T ss_pred             hhhcccc-ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHH-HcCCc
Confidence            3444444 356788888877552  22    2245553111 12    22346999999999999999999999 78888


Q ss_pred             ccccc-----------------------cCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           81 VEHID-----------------------DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        81 ~~~~d-----------------------~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      ++++-                       ..|+.||..||..++.+++++|+++|+|    +|.+|.+|||.||..+..-.
T Consensus       210 V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd----~~aqDS~GNTVLH~lVi~~~  285 (782)
T KOG3676|consen  210 VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD----PNAQDSNGNTVLHMLVIHFV  285 (782)
T ss_pred             hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC----CCccccCCChHHHHHHHHHH
Confidence            87532                       1378899999999999999999999999    99999999999999887621


Q ss_pred             CcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          138 DYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       138 ~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .+                 .++..-..........+|++|.||+.+|++..+
T Consensus       286 ~~-----------------My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  286 TE-----------------MYDLALELGANALEHVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             HH-----------------HHHHHHhcCCCccccccccCCCChHHHHHHhhh
Confidence            11                 111111111112357899999999999988654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=1.4e-12  Score=134.92  Aligned_cols=102  Identities=16%  Similarity=0.250  Sum_probs=91.9

Q ss_pred             HHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHH
Q 016455           27 KIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        27 ~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i  103 (389)
                      .|+.++..|..+   .|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+ ..|++++.+|.+|+||||+|+.+|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL-EFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            366777777655   889999999999999999999999999999999999 7899999999999999999999999999


Q ss_pred             HHHHHcc-------CCcccccccccccCCcccchhcc
Q 016455          104 FELVVQM-------EVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus       104 v~~Ll~~-------g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      +++|+++       |++    .+..+.+|++|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~----~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGAN----AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCC----CCccccCCCCccchhh
Confidence            9999998       666    7888888888877665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.23  E-value=3e-11  Score=106.97  Aligned_cols=117  Identities=10%  Similarity=0.058  Sum_probs=100.9

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccc-cccCCChHHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-IDDEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~G~t~Lh~A~~~   98 (389)
                      ....+|..+...+..+   .|++.--++|.+|..|.+||..|+.+|+.++++.|+ +.|+|+|. ++..+.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll-~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLL-ELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHH-HhCCCcCcccccccccHHHHHHHc
Confidence            3445566666666655   566655668999999999999999999999999999 78899886 677899999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l  144 (389)
                      |+.++.++|++.|+.    ....|.-|+|+-.+|+.-|+.+++..+
T Consensus        90 Gn~dvcrllldaGa~----~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR----MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CCchHHHHHHhccCc----cccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999998    888999999999999999999888444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.23  E-value=3e-11  Score=107.54  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=93.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC--------hhhHhhcCC---CCCcCCCCCCcHHHHHHHcCcHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN--------ASSVDQKGI---GESSANDNAETPLFLATKSGCIEIV   70 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~--------~~~Ll~~ga---~~n~~d~~G~tpLh~Aa~~g~~~~v   70 (389)
                      +.++++++.|++++.++.   .+.+++|.|+..+.        ++.|++.|+   +.+.+|..|.||||+|+..|+.+++
T Consensus        87 ~~~~~l~~~~~~~~~~~~---~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~  163 (235)
T COG0666          87 KIVKLLLASGADVNAKDA---DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV  163 (235)
T ss_pred             HHHHHHHHcCCCcccccC---CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHH
Confidence            456789999999999997   45567777777666        559999999   5567799999999999999999999


Q ss_pred             HHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccC
Q 016455           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME  111 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g  111 (389)
                      +.|+ ..+++++.+|..|.|++|.|+..++.++++.+++.+
T Consensus       164 ~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         164 ELLL-EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHH-hcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999 779999999999999999999999999999999864

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=1.4e-11  Score=127.40  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccC
Q 016455           57 PLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        57 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      +|+.|+..|+.+.++.|+ ..|+++|.+|.+|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL-~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad----vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILL-TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD----PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCC
Confidence            588999999999999999 78999999999999999999999999999999999999    9999999999999999999


Q ss_pred             CCccc
Q 016455          137 SDYVP  141 (389)
Q Consensus       137 ~~~~~  141 (389)
                      +.+++
T Consensus       160 ~~~iv  164 (664)
T PTZ00322        160 FREVV  164 (664)
T ss_pred             cHHHH
Confidence            88877

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.19  E-value=5.4e-12  Score=86.60  Aligned_cols=50  Identities=28%  Similarity=0.377  Sum_probs=41.5

Q ss_pred             CChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           88 GRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+||||+|++.|+.+++++|+++|.+    +|.+|.+|+||||+|++.|+.+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d----in~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD----INAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG----TT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHccCHHHH
Confidence            78999999999999999999999998    999999999999999999987665

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.17  E-value=1.7e-11  Score=90.39  Aligned_cols=80  Identities=26%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcccc
Q 016455           56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~  135 (389)
                      --+.++.++|..+-|+..+ ..|.++|..- .|++|||+|+-+|+.+++++|+..|++    ++.+|+.|-|||--|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v-~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~----i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSV-NEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN----IQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHH-HccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc----cCCccccCCcHHHHHHHH
Confidence            3467889999999999888 5667777654 899999999999999999999999999    999999999999999999


Q ss_pred             CCCccc
Q 016455          136 RSDYVP  141 (389)
Q Consensus       136 ~~~~~~  141 (389)
                      ||..++
T Consensus        78 GH~~cV   83 (117)
T KOG4214|consen   78 GHRDCV   83 (117)
T ss_pred             hhHHHH
Confidence            998888

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.12  E-value=2.5e-11  Score=123.79  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=113.0

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCC---ChhhHhhcCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP---NASSVDQKGIGESS-ANDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~---~~~~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      .|.+++|+.+|+++..+|+   .+..++..++-.+   .++.|+++.++++. .|..+.|+|.+||..|+.++|++|| .
T Consensus       770 ~e~vellv~rganiehrdk---kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl-~  845 (2131)
T KOG4369|consen  770 REEVELLVVRGANIEHRDK---KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLL-N  845 (2131)
T ss_pred             HHHHHHHHHhccccccccc---ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHH-H
Confidence            3789999999999999998   4455566555444   45688999999964 5778999999999999999999999 7


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc--cCCcccchhccccCCCccc
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID--NGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d--~~G~TpLh~A~~~~~~~~~  141 (389)
                      .|++-+.++-...|||.+|...|..++++.|+..|..    +|.+.  +-|-.||++|.++||....
T Consensus       846 ~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse----InSrtgSklgisPLmlatmngh~~at  908 (2131)
T KOG4369|consen  846 AGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE----INSRTGSKLGISPLMLATMNGHQAAT  908 (2131)
T ss_pred             hhccccccchhhcCchhhhcCcchHHHHHHHhhcccc----cccccccccCcchhhhhhhccccHHH
Confidence            8888889999999999999999999999999999977    66554  6788999999999987655

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=1.6e-10  Score=109.85  Aligned_cols=103  Identities=18%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             cHHHHHccCCCChhh---HhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCCh
Q 016455           25 KPKIHRYGANPNASS---VDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        25 ~~~lh~a~~~~~~~~---Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  101 (389)
                      +..|.-|+..|.+++   .+..=-|+...+++|-|+||-|+..||.++|++|+ ..|+++|..|.+||||||+|+..++.
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi-~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLI-EFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHH-hcCCcccCccCCCCchhhhhhhcCch
Confidence            333445555555542   33344667788888999999999999999999999 88999999999999999999999999


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchh
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHM  131 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~  131 (389)
                      .+++.|++.|+-   +.-..=.++.|+..-
T Consensus       630 ~~ckqLVe~Gaa---vfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  630 PMCKQLVESGAA---VFASTLSDMETAAEK  656 (752)
T ss_pred             HHHHHHHhccce---EEeeecccccchhhh
Confidence            999999998875   123333456666443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.05  E-value=1.2e-10  Score=118.83  Aligned_cols=177  Identities=15%  Similarity=0.068  Sum_probs=106.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCC--CCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSAN--DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      +++++||..|++-..++-.++   +|+..|..-+.+   ..|+.+|+++|.+.  +.|-.||.+|+.+||.+.++.|+ .
T Consensus       838 ~vvelLl~~gankehrnvsDy---tPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll-~  913 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHRNVSDY---TPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL-Q  913 (2131)
T ss_pred             hHHHHHHHhhccccccchhhc---CchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh-c
Confidence            567777777766555554333   334444444433   36677777776654  34777777777777777777777 5


Q ss_pred             CCCCcccc-ccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCC---------
Q 016455           77 YPQAVEHI-DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG---------  146 (389)
Q Consensus        77 ~~~~~~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~---------  146 (389)
                      .|.|+|.. ..+.+|+|-+|+-.|+.+++.+||.+.++    +..+-+.|-|||+-++..|..++-+.+..         
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an----vehRaktgltplme~AsgGyvdvg~~li~~gad~nasP  989 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN----VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASP  989 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhh----hhhhcccCCcccchhhcCCccccchhhhhcccccccCC
Confidence            66666653 33556777777777777777777777666    66677778888888777777665533311         


Q ss_pred             ------hhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhh
Q 016455          147 ------PALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       147 ------~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~  186 (389)
                            +++.+..+-...+.+.++.. ..-++.+|++|.|+|-+++.
T Consensus       990 vp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~ 1036 (2131)
T KOG4369|consen  990 VPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASA 1036 (2131)
T ss_pred             CCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhcc
Confidence                  11111111111222222221 12257889999999977654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=5.8e-10  Score=106.20  Aligned_cols=78  Identities=24%  Similarity=0.277  Sum_probs=71.1

Q ss_pred             HHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCC
Q 016455           59 FLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        59 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~  138 (389)
                      .-|+..|..++|+..+ ..-.|+...|.+|-|+||-|+..||.+||++|++.|++    +|..|.+|+||||.|+.-++.
T Consensus       555 LDaaLeGEldlVq~~i-~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan----VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  555 LDAALEGELDLVQRII-YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN----VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HhhhhcchHHHHHHHH-HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc----ccCccCCCCchhhhhhhcCch
Confidence            4578899999999998 55678889999999999999999999999999999999    999999999999999988776


Q ss_pred             ccc
Q 016455          139 YVP  141 (389)
Q Consensus       139 ~~~  141 (389)
                      .++
T Consensus       630 ~~c  632 (752)
T KOG0515|consen  630 PMC  632 (752)
T ss_pred             HHH
Confidence            555

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=6.2e-09  Score=92.51  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            3 LARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESS-ANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      -...|++.--++|..|.   ++.++|..|+..|+.+   +|++.|+|+|. ++..+.||||.||..|+.++.+.|+ +.|
T Consensus        27 ~a~~LLs~vr~vn~~D~---sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll-daG  102 (396)
T KOG1710|consen   27 AALALLSTVRQVNQRDP---SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL-DAG  102 (396)
T ss_pred             HHHHHHHHhhhhhccCC---CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHH-hcc
Confidence            34456655445788886   6667787888888765   89999999975 4677999999999999999999999 889


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQ  109 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  109 (389)
                      +.....|.-|+|+-..|+.-|+.++|..+-+
T Consensus       103 a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  103 ARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999999999999987644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=8.7e-09  Score=97.56  Aligned_cols=105  Identities=19%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             CcCCCCCCcH------HHHHHHcCcHHHHHHHHHHCCCCcccccc-CCChHHHHHHHhCChHHHHHHHccCCcccccccc
Q 016455           48 SSANDNAETP------LFLATKSGCIEIVKEIFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK  120 (389)
Q Consensus        48 n~~d~~G~tp------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~  120 (389)
                      ..+|.+|.|.      ||..++.|+.+..--|| ..|+++|..+. .|.||||+|++.|+..-+++|.-+|+|    ++.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----~~a  195 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----PGA  195 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----CCC
Confidence            4567777765      89999999999888888 78999998774 799999999999999999999999999    999


Q ss_pred             cccCCcccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455          121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus       121 ~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      .|.+|.||+.+|-..||.++.+++....+.+-..+.+
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl~e~~y~vtDR~~f  232 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERLVEIQYELTDRLAF  232 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886665554444443333

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.81  E-value=2e-09  Score=107.38  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=81.9

Q ss_pred             hHhhcCCC-CCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCcccccc-CCChHHHHHHHhCChHHHHHHHccCCcccc
Q 016455           39 SVDQKGIG-ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVVQMEVPMRR  116 (389)
Q Consensus        39 ~Ll~~ga~-~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  116 (389)
                      ++-+++-+ .|..|..|+|+||+|+..|..++++.|+ .+|.+++.+|. .|+||||.|..+|+.+++-+|+.+|..   
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S---  111 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS---  111 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc---
Confidence            33444444 4889999999999999999999999999 66999999996 699999999999999999999999988   


Q ss_pred             cccccccCCcccchhccc
Q 016455          117 LVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       117 ~~~~~d~~G~TpLh~A~~  134 (389)
                       +..+|++|.+||...++
T Consensus       112 -L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 -LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             -eEEecccCCCHHHHHhh
Confidence             99999999999999887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.75  E-value=7.3e-09  Score=97.66  Aligned_cols=89  Identities=20%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHcc-CCcccccccccccCCcccch
Q 016455           52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM-EVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        52 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~d~~G~TpLh  130 (389)
                      .++..++.+|++.|.+..++-+. -.+.|++.+|.+.+|+||+|+..|+.+++++|++. +.+    ++.+|+.|+|||.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~-l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~----~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFA-LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD----PDPKDRWGRTPLD  578 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHH-HhcccccccccccchhheeecccCceeHHHHHHHHHcCC----CChhhccCCCcch
Confidence            44556666666666666666555 45666666666666666666666666666666653 233    6666666666666


Q ss_pred             hccccCCCcccccCC
Q 016455          131 MTGIKRSDYVPEKME  145 (389)
Q Consensus       131 ~A~~~~~~~~~~~l~  145 (389)
                      -|...+|.+++..+.
T Consensus       579 dA~~F~h~~v~k~L~  593 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLE  593 (622)
T ss_pred             HhHhcCcHHHHHHHH
Confidence            666666666654443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.69  E-value=4e-08  Score=93.15  Aligned_cols=81  Identities=22%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             HHHccCCCChh---hHhhcCCCCCcCCCC-CCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHH
Q 016455           28 IHRYGANPNAS---SVDQKGIGESSANDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        28 lh~a~~~~~~~---~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i  103 (389)
                      ||..+..+.++   .|+..||++|..+.+ |.||||.|++.|+..-+++|+ -+|+|++..|.+|.||+.+|-..||.++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            78788888887   678899999988765 999999999999999999998 9999999999999999999999999887


Q ss_pred             HHHHHc
Q 016455          104 FELVVQ  109 (389)
Q Consensus       104 v~~Ll~  109 (389)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            776654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.59  E-value=6e-08  Score=59.00  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=15.1

Q ss_pred             CChHHHHHHHhCChHHHHHHHccCCc
Q 016455           88 GRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      |+||||+|+++|+.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            55555555555555555555555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.59  E-value=9.7e-08  Score=92.20  Aligned_cols=85  Identities=22%  Similarity=0.301  Sum_probs=72.4

Q ss_pred             HHHccCCCChh---hHhhcCCCC--C--cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           28 IHRYGANPNAS---SVDQKGIGE--S--SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        28 lh~a~~~~~~~---~Ll~~ga~~--n--~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      |..|...+++.   +|+.+|...  |  ..+.+|+|+||+||+.|++.+.++|+ .+|+|+-.+|.+|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhccc
Confidence            44455445544   677887654  3  34678999999999999999999999 9999999999999999999999999


Q ss_pred             hHHHHHHHccCCc
Q 016455          101 LEIFELVVQMEVP  113 (389)
Q Consensus       101 ~~iv~~Ll~~g~~  113 (389)
                      -+++..|+++|+.
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=1.6e-08  Score=95.46  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=80.0

Q ss_pred             CCCcHHHHHccCCCChhhH---hhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           22 DQSKPKIHRYGANPNASSV---DQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~~~L---l~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ....-.+.+|+..|.+..|   .-.|.|++.+|.+.+|+||.||..|+++++++|++.++.+++.+|..|+|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3444557789999988744   3469999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHccC
Q 016455           99 RQLEIFELVVQME  111 (389)
Q Consensus        99 ~~~~iv~~Ll~~g  111 (389)
                      +|.+++++|-+.-
T Consensus       584 ~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQ  596 (622)
T ss_pred             CcHHHHHHHHHHh
Confidence            9999999997653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=6.5e-08  Score=57.29  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=16.0

Q ss_pred             CChHHHHHHHhCChHHHHHHHccCCc
Q 016455           88 GRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      |+||||+|+++|+.+++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            56666666666666666666666655

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.54  E-value=1.2e-07  Score=57.72  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHHCCCCcccccc
Q 016455           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD   86 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   86 (389)
                      +|.||||+|+..|+.+++++|+ +.|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLL-KHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHH-HTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHH-HCcCCCCCCCC
Confidence            5899999999999999999999 79999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.52  E-value=7.9e-08  Score=92.52  Aligned_cols=98  Identities=24%  Similarity=0.266  Sum_probs=87.2

Q ss_pred             HhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCC-ccccccCCChHHHHHHHhCChHHHHHHHccCCcccccc
Q 016455           40 VDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLV  118 (389)
Q Consensus        40 Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~-~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~  118 (389)
                      ...+|.++-.++.+..+.||+|+..|+-++|++++++.|.. ++..|..|+|+||-|+..++-.+.++|++.|+.    +
T Consensus       885 ~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas----l  960 (1004)
T KOG0782|consen  885 THLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS----L  960 (1004)
T ss_pred             HHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh----h
Confidence            34468888888999999999999999999999999665543 677899999999999999999999999999998    8


Q ss_pred             cccccCCcccchhccccCCCccc
Q 016455          119 RKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 ~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ...|..|.||-.-|-+.++.+..
T Consensus       961 ~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  961 RKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             eecccCCCChHHHHHhcCCchHH
Confidence            89999999999999888887765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=1.4e-07  Score=55.86  Aligned_cols=29  Identities=45%  Similarity=0.580  Sum_probs=26.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHHCCCCcc
Q 016455           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVE   82 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   82 (389)
                      +|+||||+||+.|+.|++++|+ +.|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll-~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLL-EHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHH-HcCCCCC
Confidence            5899999999999999999999 6788876

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=3.5e-07  Score=87.90  Aligned_cols=84  Identities=19%  Similarity=0.251  Sum_probs=68.8

Q ss_pred             HHHHHccCCCChh-----hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           26 PKIHRYGANPNAS-----SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        26 ~~lh~a~~~~~~~-----~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      .++|++......+     ++.+.+..++.+|..|+||||+|+.-|+.+.++.|+ ..++++..+|++|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcCC
Confidence            3477666555444     233445667899999999999999999999999999 8899999999999999999999999


Q ss_pred             hHHHHHHHcc
Q 016455          101 LEIFELVVQM  110 (389)
Q Consensus       101 ~~iv~~Ll~~  110 (389)
                      .+++.-++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            8877666543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.38  E-value=5.4e-07  Score=86.67  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             cHHHHHHHcCcHHHHH-HHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccc
Q 016455           56 TPLFLATKSGCIEIVK-EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~-~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      -|+|.++.....+-++ ++..+....++.+|..|+||||+|+.-|+.+.++.|+..|++    +..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----v~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----VSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----ccccccccccHHHHHHH
Confidence            4599999887766554 444344567889999999999999999999999999999999    99999999999999999


Q ss_pred             cCCCccc
Q 016455          135 KRSDYVP  141 (389)
Q Consensus       135 ~~~~~~~  141 (389)
                      .|+.+++
T Consensus        98 ~g~~q~i  104 (560)
T KOG0522|consen   98 TGNEQII  104 (560)
T ss_pred             cCCHHHH
Confidence            9998766

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.32  E-value=3.1e-07  Score=92.22  Aligned_cols=82  Identities=20%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CccccccCCCCcHHHHHccC---CCChhhHhhcCCCCCcCCCC-CCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCC
Q 016455           14 WEITDSFQDQSKPKIHRYGA---NPNASSVDQKGIGESSANDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR   89 (389)
Q Consensus        14 vn~~d~~~~~~~~~lh~a~~---~~~~~~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~   89 (389)
                      .|.+|.   .+++++|.++.   ++.++.|+++|+|++.+|.+ |+||||.|...|++|++..|| .+|..+..+|++|.
T Consensus        45 anikD~---~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL-~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   45 ANIKDR---YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL-SKGRSLRIKDKEGL  120 (1267)
T ss_pred             hhHHHh---hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH-hcCCceEEecccCC
Confidence            455664   56677776654   45677999999999999985 999999999999999999999 88999999999999


Q ss_pred             hHHHHHHHhC
Q 016455           90 NILHVAIKYR   99 (389)
Q Consensus        90 t~Lh~A~~~~   99 (389)
                      +||..-++-.
T Consensus       121 splq~~~r~~  130 (1267)
T KOG0783|consen  121 SPLQFLSRVL  130 (1267)
T ss_pred             CHHHHHhhcc
Confidence            9999877643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.21  E-value=2e-06  Score=83.11  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             HHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        58 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      +.-|+..+..--+++.- ..|.++-.++.+.++.||+|+..|+.++|+|++++|.  ..+++..|..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h-~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH-LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHH-hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcc
Confidence            34455555544444444 5677888999999999999999999999999999984  46789999999999999998877


Q ss_pred             CcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          138 DYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       138 ~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ..+.+      +....+..             +...|..|+||.+-|.+...
T Consensus       947 r~vc~------~lvdagas-------------l~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  947 RAVCQ------LLVDAGAS-------------LRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             hHHHH------HHHhcchh-------------heecccCCCChHHHHHhcCC
Confidence            66551      11111111             34568899999998776543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.16  E-value=1.2e-06  Score=91.09  Aligned_cols=94  Identities=19%  Similarity=0.154  Sum_probs=82.5

Q ss_pred             cCCCCCcC--CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccc
Q 016455           43 KGIGESSA--NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK  120 (389)
Q Consensus        43 ~ga~~n~~--d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~  120 (389)
                      +|+++|-.  -..|.|+||.|+..|..-++++|+ .+++++|..|..|+||+|.+...|+...+..++++|++    .+.
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~----~~a  717 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD----PNA  717 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHH-hcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc----ccc
Confidence            34555432  346899999999999999999999 88999999999999999999999999999999999999    999


Q ss_pred             cccCCcccchhccccCCCccc
Q 016455          121 IDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       121 ~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .|.+|.+||++|....+.++.
T Consensus       718 ~~~~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  718 FDPDGKLPLDIAMEAANADIV  738 (785)
T ss_pred             cCccCcchhhHHhhhccccHH
Confidence            999999999999876555544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.06  E-value=9.3e-06  Score=68.38  Aligned_cols=69  Identities=14%  Similarity=0.035  Sum_probs=63.1

Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC-CCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           44 GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP-QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      +.++|.+|..|+||++.|+..|..+.+.+|+ ..| +.+...|..|.+++.+|-+.|+.++++.|-+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyll-grg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLL-GRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHh-ccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5688999999999999999999999999999 556 89999999999999999999999999999887544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.85  E-value=1.9e-05  Score=76.70  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             HHHHHHcCcHHHHHHHHHHCCCCc----cccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcc
Q 016455           58 LFLATKSGCIEIVKEIFNVYPQAV----EHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        58 Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      |..|+...++..+-+|| .+|...    ...+.+|+|+||+|+..|+..+.++|+-+|+|    +..+|.+|+|+|.||-
T Consensus       628 Ll~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d----v~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLL-AHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD----VMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHH-hccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc----ceecccCCchhhhhHh
Confidence            44566666777777787 655432    23466889999999999999999999999999    9999999999999999


Q ss_pred             ccCCCccc
Q 016455          134 IKRSDYVP  141 (389)
Q Consensus       134 ~~~~~~~~  141 (389)
                      +.|..++.
T Consensus       703 ~a~sqec~  710 (749)
T KOG0705|consen  703 QAGSQECI  710 (749)
T ss_pred             hcccHHHH
Confidence            99887776

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.77  E-value=1.2e-05  Score=83.46  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=93.3

Q ss_pred             CCcHHHHHccCCCChh---hHhhc-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQK-GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      .+.+.+|.++..+...   .+++- |...+..|.+|..-+|. |..++.+..-+++...+..++.+|..||||||+|+.+
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            4456688888777654   33443 55556677788888888 5666677777777678899999999999999999999


Q ss_pred             CChHHHHHHHccCCcccc--cccccccCCcccchhccccCCCcccccCCCh
Q 016455           99 RQLEIFELVVQMEVPMRR--LVRKIDNGGNTLLHMTGIKRSDYVPEKMEGP  147 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~--~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~  147 (389)
                      |+..++..|++.|++...  +++..+-.|.|+-.+|..+|+..+...+...
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999988776332  2344556799999999999988776444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.74  E-value=6e-05  Score=69.92  Aligned_cols=53  Identities=15%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             HHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCc
Q 016455           28 IHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAV   81 (389)
Q Consensus        28 lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   81 (389)
                      ++.|+..|.++   .|++.|.++|++|.-...||.+|+-.||.++|++|+ ++|+-.
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLL-enGAiC   95 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLL-ENGAIC   95 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHH-HcCCcc
Confidence            34444444333   455555555555555555555555555555555555 444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.66  E-value=4e-05  Score=79.91  Aligned_cols=84  Identities=20%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             CCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      .+.+++|.|...+.   .++|+++|+++|..|..|+||+|.+...|+...+..++ +.+++.+..|.+|.+++++|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll-~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLL-KRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhc-cccccccccCccCcchhhHHhhhc
Confidence            34567888877765   45999999999999999999999999999999999999 699999999999999999998886


Q ss_pred             ChHHHHHH
Q 016455          100 QLEIFELV  107 (389)
Q Consensus       100 ~~~iv~~L  107 (389)
                      +.+++-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            66665444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.58  E-value=0.016  Score=59.64  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             CCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCcc------
Q 016455           12 TSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVE------   82 (389)
Q Consensus        12 a~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~------   82 (389)
                      .++|..|.   -+..+++.|..+++.+   +|++++...       ..+|.+|+..|..+.|+.+++ ++....      
T Consensus        53 lninc~d~---lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~-~~~~~~~~~~~~  121 (822)
T KOG3609|consen   53 LNINCRDP---LGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLV-HFVDAPYLERSG  121 (822)
T ss_pred             cchhccCh---HhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHh-cccccchhcccc
Confidence            35666665   5556677777777665   666665543       347888888888888888884 332221      


Q ss_pred             ----ccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           83 ----HIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        83 ----~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                          ..-..+-||+.+||..++.||+++|+++|+.
T Consensus       122 d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  122 DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence                1223578999999999999999999999886

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.52  E-value=5.3e-05  Score=78.81  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHH-ccCCcccccccccccCCc
Q 016455           48 SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV-QMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        48 n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~~~~d~~G~  126 (389)
                      ....-.|++-+|+++..++...++.+++..+......|.+|...+|.++ .++.+..-++. -.|..    ++.+|..|+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~a----i~i~D~~G~  642 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVA----IDIRDRNGW  642 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccc----cccccCCCC
Confidence            4455679999999999999999999996446666678889999999955 45555554444 34555    999999999


Q ss_pred             ccchhccccCCCccc
Q 016455          127 TLLHMTGIKRSDYVP  141 (389)
Q Consensus       127 TpLh~A~~~~~~~~~  141 (389)
                      ||||+|+..|+..++
T Consensus       643 tpL~wAa~~G~e~l~  657 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLV  657 (975)
T ss_pred             cccchHhhcCHHHHH
Confidence            999999999997766

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.42  E-value=6.2e-05  Score=63.51  Aligned_cols=60  Identities=12%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccC-CcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.++|.+|..|||+++.|+..|+.+.+.+|+++| +.    +...|..|++++.+|-+.|..+++
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~----vgv~d~ssldaaqlaek~g~~~fv   62 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF----VGVTDESSLDAAQLAEKGGAQAFV   62 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc----ccccccccchHHHHHHhcChHHHH
Confidence            4579999999999999999999999999999999 65    899999999999999999887766

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.12  E-value=0.00087  Score=62.43  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      .--|..||+.|..+.|+.|+ +.|.++|.+|....+||.+|+..||.+++++|+++|+-
T Consensus        37 f~elceacR~GD~d~v~~LV-etgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLV-ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHH-HhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            44689999999999999999 69999999999999999999999999999999999985

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.47  E-value=0.0015  Score=66.88  Aligned_cols=91  Identities=13%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccc------
Q 016455           45 IGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLV------  118 (389)
Q Consensus        45 a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~------  118 (389)
                      .++|.+|.-|+++||+|..+.+.|++++|+ +.+...       ..+|.+|+..|..++|+.++.+.......-      
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl-~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLL-DTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHh-cCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence            567899999999999999999999999999 544332       458999999999999999998754311110      


Q ss_pred             cccccCCcccchhccccCCCccccc
Q 016455          119 RKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus       119 ~~~d~~G~TpLh~A~~~~~~~~~~~  143 (389)
                      ...-..+-||+.+||..++.|+++.
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHH
Confidence            1222357899999999999988743

>smart00248 ANK ankyrin repeats

Probab=96.35  E-value=0.0056  Score=34.25  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=12.2

Q ss_pred             CChHHHHHHHhCChHHHHHHHccC
Q 016455           88 GRNILHVAIKYRQLEIFELVVQME  111 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g  111 (389)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            445555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.31  E-value=0.0072  Score=33.78  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=23.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHHCCCCc
Q 016455           53 NAETPLFLATKSGCIEIVKEIFNVYPQAV   81 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   81 (389)
                      +|.||+|+|+..|+.++++.|+ ..+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll-~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLL-DKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HcCCCC
Confidence            4789999999999999999999 555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.22  E-value=0.0057  Score=59.11  Aligned_cols=60  Identities=15%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             ChhhHhhcCCCCCc------CCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHH
Q 016455           36 NASSVDQKGIGESS------ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAI   96 (389)
Q Consensus        36 ~~~~Ll~~ga~~n~------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~   96 (389)
                      .++.|.+++.+.|.      .|.--.|+||+|+..|..++|.++| ..++|+...|..|+||..++.
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~L-eeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFL-EEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHH-HhcCCchhcccCCCCcccccc
Confidence            45566677666642      2334667888888888888888888 556778888888888877766

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.14  E-value=0.0079  Score=58.16  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHCCCCcc------ccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcc
Q 016455           67 IEIVKEIFNVYPQAVE------HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        67 ~~~v~~Ll~~~~~~~~------~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      .+.+++|. .++.+.|      ..|..--|+||+|+.+|..+++.++|+.|+|    +..+|..|+||..++.
T Consensus       404 p~~ie~lk-en~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALK-ENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHH-hcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC----chhcccCCCCcccccc
Confidence            45566665 4444432      3445567999999999999999999999999    9999999999999987

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.06  E-value=1.9  Score=31.26  Aligned_cols=47  Identities=23%  Similarity=0.259  Sum_probs=38.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHcc
Q 016455           56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM  110 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  110 (389)
                      .-+..|+..|+.|+++.+++...  ++      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45789999999999999984331  11      4579999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	389
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-04

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
           + GA+ NAS  D  GI          TPL LA  +G +EIV E+   +   V   D++G 
Sbjct: 68  KNGADVNAS--DLTGI----------TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGH 114
Query: 90  NILHVAIKYRQLEIFELVVQ 109
             LH+A KY  LEI E++++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK 134

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 42  QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
           + G   ++ + N  TPL LA ++G +E+VK +       V   D  GR  LH+A +   L
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHL 81
Query: 102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTG 133
           E+ +L+++        V   D  G T LH+  
Sbjct: 82  EVVKLLLEAGAD----VNAKDKNGRTPLHLAA 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN N     +    +        T L  A + G +E++K + +     V   D+ GRN
Sbjct: 127 RGANVNLR--RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLHM 131
            L  A+        E +  +      L      V      G T L +
Sbjct: 185 ALIHALLSSDDSDVEAITHL------LLDHGADVNVRGERGKTPLIL 225

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
           +GA+P                 N  TP  LA  +G ++++K       +     V   D 
Sbjct: 61  HGADPVL------------RKKNGATPFLLAAIAGSVKLLKLFLSKGAD-----VNECDF 103

Query: 87  EGRNILHVAIKYRQLEIFELV------VQMEVPMRRLVRKIDNGGNTLLH 130
            G      A  Y +++  + +      V +    +    ++  GG T L 
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+ N               +  +TPL LA +   + +V+ +       +   D +G+ 
Sbjct: 208 HGADVNV------------RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 91  ILHVAIKYRQLEIFEL 106
            L +A++ +  +I EL
Sbjct: 256 ALLLAVELKLKKIAEL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI-LHVAIKYRQLEIFELVV 108
           A       L  A ++  +++V+++       V   ++EG    LH A++  + +I EL  
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVEL-- 57

Query: 109 QMEVPMRRLVRK------IDNGGNTLLHM 131
                   L+R           G T   +
Sbjct: 58  --------LLRHGADPVLRKKNGATPFLL 78

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
             ANPN             A     TPL +A + G +E V  +     +A    +  +G 
Sbjct: 102 NNANPNL------------ATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGF 147

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
             LHVA KY ++ + EL+++ +             G T LH
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAH----PNAAGKNGLTPLH 184

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 19/101 (18%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           G +                 ++  TPL +A+  G + IVK +      A     + +   
Sbjct: 4   GISGGG------------GGESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVET 49

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A +    E+ + ++Q +      V        T LH 
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAK----VNAKAKDDQTPLHC 86

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           YG + NA             +    TPL LA + G  E+V  + +         +  G  
Sbjct: 234 YGGSANA------------ESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLT 280

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+  +   + + +++++  V     V      G T LH+
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
             A+PNA            A  N  TPL +A     ++IVK +              G  
Sbjct: 168 RDAHPNA------------AGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYT 214

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A K  Q+E+   ++Q               G T LH+
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGS----ANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 29/106 (27%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           G +P++               N  TPL +A K   +E+ + +             +G   
Sbjct: 202 GGSPHS------------PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTP 248

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           LH+A +    E+  L          L+ K       +  G T LH+
Sbjct: 249 LHLAAQEGHAEMVAL----------LLSKQANGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 31/108 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
           +G   +A                  TPL +A+  G I++VK +     QA V      G 
Sbjct: 300 HGVMVDA------------TTRMGYTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGY 345

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           + LH A +    +I  L          L++       + + G T L +
Sbjct: 346 SPLHQAAQQGHTDIVTL----------LLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEG 88
           +  A  NA               + +TPL  A + G   +VK +      A        G
Sbjct: 68  QNKAKVNA------------KAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAG 113

Query: 89  RNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
              LH+A +   +E    +++ E         +   G T LH
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEAS----QACMTKKGFTPLH 151

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 14/100 (14%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           + A+ NA                  +PL  A + G  +IV  +          +  +G  
Sbjct: 333 HQADVNA------------KTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTT 379

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
            L +A +   + + +++  +       V   D    +   
Sbjct: 380 PLAIAKRLGYISVTDVLKVV-TDETSFVLVSDKHRMSFPE 418

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 26/107 (24%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              N N          +   +D+  TP  +A   G +E+VK +++   +  +  I ++G 
Sbjct: 58  KMENVNL---------DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLH 130
             LH+A+  +  E+ +           L      VR  D      LH
Sbjct: 109 TCLHLAVGKKWFEVSQF----------LIENGASVRIKDKFNQIPLH 145

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 29/108 (26%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA+                +   + PL  A   G +++++ +  +   AV   D +G  
Sbjct: 129 NGASVRI------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRK-------IDNGGNTLLHM 131
            L  A+     +   L          LV K       +DN G     +
Sbjct: 177 PLFHALAEGHGDAAVL----------LVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 20/105 (19%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
             +                 + +   PL  +      EI   +     NV     ++ DD
Sbjct: 25  KPSLLLQ------------KDQDGRIPLHWSVSFQAHEITSFLLSKMENV--NLDDYPDD 70

Query: 87  EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            G    H+A     LE+ + +    +  +  + KI N G T LH+
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 30/110 (27%)

Query: 29  HRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH----- 83
                + N               +   T L LA      E+ + +       +E+     
Sbjct: 94  RPLKPDLNK------------ITNQGVTCLHLAVGKKWFEVSQFL-------IENGASVR 134

Query: 84  -IDDEGRNILHVAIKYRQLEIFE-LVVQMEVPMRRLVRKIDNGGNTLLHM 131
             D   +  LH A     L++ E L    +      V   D  G T L  
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFH 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPM 114
             PL  A        V+E+ +  P  +   D +GR  LH ++ ++  EI   ++     +
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 115 RRLVRKIDNGGNTLLH 130
                  D+ G T  H
Sbjct: 63  NLDDYP-DDSGWTPFH 77

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 47/178 (26%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIV------------KEIFNVYP 78
                    +  +           +T L +A  +  + +V            +   +V+ 
Sbjct: 59  AAPELVFEPMTSE-------LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFH 111

Query: 79  QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLHMT 132
               ++   G + L  A      EI  L          L      +R  D+ GNT+LH+ 
Sbjct: 112 YRPHNLIYYGEHPLSFAACVGSEEIVRL----------LIEHGADIRAQDSLGNTVLHIL 161

Query: 133 GIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEEL-FATANN 189
            ++ +          A  +   LL Y+      +       NN G TP     A    
Sbjct: 162 ILQPNKTF-------ACQMYNLLLSYD--GGDHLKSLELVPNNQGLTP--FKLAGVEG 208

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 25/113 (22%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
            G   +                  ET L +A     +E    +      +  + +     
Sbjct: 26  EGCEVHQ------------RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY 73

Query: 87  EGRNILHVAIKYRQLEIFELVVQ---------MEVPMRRLVRKIDNGGNTLLH 130
           EG+  LH+A+  + + +   ++                     +   G   L 
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ--MEV 112
           E+PL LA K   ++ + ++       V      G   LH+A  Y  LE   ++++   E+
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 113 PMRRLVRKIDNGGNTLLHM 131
               +  +    G T LH+
Sbjct: 64  VFEPMTSE-LYEGQTALHI 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 21/85 (24%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV---------YPQAV 81
           +GA+  A             +    T L +           +++N+              
Sbjct: 143 HGADIRA------------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 82  EHIDDEGRNILHVAIKYRQLEIFEL 106
              +++G     +A     + +F+ 
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQH 215

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA----VEHIDD 86
            GA+P A             +   ETPL  A +    E +  + +  P      +++ + 
Sbjct: 162 LGASPTA------------KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 87  EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           +G + LH AI     ++    V+M +     V   DN     L++
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 25/101 (24%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            G +P               N    T L LA K GC++  K + +       H    G+ 
Sbjct: 42  TGVSPTI------------QNRFGCTALHLACKFGCVDTAKYLAS---VGEVHSLWHGQK 86

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            +H+A+   + ++             LV      G     +
Sbjct: 87  PIHLAVMANKTDLVVA----------LVEGAKERGQMPESL 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 40/118 (33%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK------------EIFNVYP 78
            G + N              ++    PL+L+ ++  + + K                   
Sbjct: 233 MGIDVNM------------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 79  QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLH 130
             V        + +  A    + E+ +L          L  K        N G     
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQL----------LQEKLDEVVRSLNTGAGGAV 328

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 38/120 (31%)

Query: 32  GANPN----------ASSVDQKGIGE---SSANDNAETPLFLATKSGCIEIVKEIFNVYP 78
           G   +          A   ++  +       A +  + P  L  +    E+ +   +V  
Sbjct: 76  GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV-- 133

Query: 79  QAVEHIDDEGRNILHVAIKYRQ--LEIFELVVQMEVPMRRLVRK------IDNGGNTLLH 130
                   +G+  LH  +      LE+ ++          LV+        D    T L 
Sbjct: 134 -----KHCKGQTALHWCVGLGPEYLEMIKI----------LVQLGASPTAKDKADETPLM 178

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 13/130 (10%), Positives = 27/130 (20%), Gaps = 27/130 (20%)

Query: 2   ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFLA 61
            L + L+++   + I               G       V                 +  A
Sbjct: 258 LLTKELLQKTDVFLIQACPYH--------NGTTVLPDRVVWL------------DFVPAA 297

Query: 62  TKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK 120
                 E+++ +        V    + G        K     +  + +    P    VR 
Sbjct: 298 ADPSKQEVLQLLQEK--LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP----VRT 351

Query: 121 IDNGGNTLLH 130
                     
Sbjct: 352 RSRSRARSSA 361

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 27/108 (25%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
            A  N              N+  +TPL LA  +   EI + +       +         D
Sbjct: 35  LAFLNF------------QNNLQQTPLHLAVITNQPEIAEAL-------LGAGCDPELRD 75

Query: 86  DEGRNILHVAIKYRQLEIFELVVQ--MEVPMRRLVRKIDNGGNTLLHM 131
             G   LH+A +   L    ++ Q      +  +++  +  G+T LH+
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 26/110 (23%)

Query: 31  YGANPNASS-VDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH---ID- 85
               P+  S +          N N  T L LA+  G + IV+ +       V     ++ 
Sbjct: 100 SCTTPHLHSILKAT-------NYNGHTCLHLASIHGYLGIVELL-------VSLGADVNA 145

Query: 86  ---DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT 132
                GR  LH+A+  +  ++  L+++        V ++   G +   +T
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLT 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 19/92 (20%)

Query: 49  SANDNAETPLFLATKSGCIEIVKEIFNVYPQA---VEHIDDEGRNILHVAIKYRQLEIFE 105
            A+++ +TPL +A   G +  V  + N++ Q    ++  ++  +  LH+A+      +  
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 106 LVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           L          LV        +D  G T  H+
Sbjct: 64  L----------LVTAGASPMALDRHGQTAAHL 85

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 25/105 (23%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           G   +              N+  +TPL LA  +    +V+ +       V        +D
Sbjct: 36  GRELDI------------YNNLRQTPLHLAVITTLPSVVRLL-------VTAGASPMALD 76

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
             G+   H+A ++R       ++    P    +   +  G T LH
Sbjct: 77  RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN---VYPQAVEHIDDEG 88
           GA+P A             + + +T   LA +      ++ + +        +E  + +G
Sbjct: 69  GASPMA------------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 89  RNILHVAIKYRQLEIFEL 106
              LHVA+     E  +L
Sbjct: 117 LTALHVAVNTECQETVQL 134

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 40/113 (35%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ +A               +  +PL  A ++  + +V+ +       ++H       
Sbjct: 138 RGADIDAV-----------DIKSGRSPLIHAVENNSLSMVQLL-------LQHGANVNAQ 179

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
              G + LH A     L +             LVR        +   +T L +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRT----------LVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GAN NA               +  + L  A+  G + +V+ +       V         
Sbjct: 172 HGANVNA------------QMYSGSSALHSASGRGLLPLVRTL-------VRSGADSSLK 212

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           +      L VA   R ++I   
Sbjct: 213 NCHNDTPLMVARSRRVIDILRG 234

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 51  NDNAETPLFLATKSGCIEIVK------------EIFNVYPQAVEHIDDEGRNILHVAIKY 98
                + L +A +   ++ VK                 + +        G   L +A   
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 99  RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY 158
           +Q ++   +++        +   D+ GNT+LH   +   +         ALV+       
Sbjct: 147 KQWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPENS----ALVIHMYDGLL 201

Query: 159 ERVEE-VSIPHFRNHRNNMGFTP 180
           +               N+ G TP
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 15/117 (12%)

Query: 30  RYGANPNASSVDQKGIGESSANDNA-ETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDD 86
             GA+ +  +  +             E PL LA  +   ++V   + N +  A +E  D 
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

Query: 87  EGRNILHVAIKYRQ---------LEIFEL---VVQMEVPMRRLVRKIDNGGNTLLHM 131
            G  +LH  +             + +++    +     P  +L    ++ G T L +
Sbjct: 171 LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ 109
            +      +F   + G    V+   +     +   DD G + LH A +  +  + E+   
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM--- 57

Query: 110 MEVPMRRL------VRKIDNGGNTLLHM 131
                  L      +  ++ G +T LH+
Sbjct: 58  -------LIMRGARINVMNRGDDTPLHL 78

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 41/113 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA  N              N   +TPL LA   G  +IV+++       +++      +
Sbjct: 61  RGARINV------------MNRGDDTPLHLAASHGHRDIVQKL-------LQYKADINAV 101

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           ++ G   LH A  + Q ++ E           LV         +  G   +  
Sbjct: 102 NEHGNVPLHYACFWGQDQVAED----------LVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           Y A+ NA             N++   PL  A   G  ++ +++       V +       
Sbjct: 94  YKADINA------------VNEHGNVPLHYACFWGQDQVAEDL-------VANGALVSIC 134

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           +  G   +  A    +  + E 
Sbjct: 135 NKYGEMPVDKAKAPLRELLRER 156

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 28/105 (26%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA  +              +    T L LA K G  E+V+ + +     V   DD G   
Sbjct: 67  GALVDP------------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLH 130
           +  A +Y+ +++ +L          L+ K       DN  N  LH
Sbjct: 115 MIWATEYKHVDLVKL----------LLSKGSDINIRDNEENICLH 149

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN +              +++  TPL  A ++  +E VK +       V+  D EG  
Sbjct: 33  AGANIDT------------CSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGST 79

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A K    E+ + ++         V   D+GG T +  
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMD---VNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              + +A             N + ++PL +A +    + V    +    + V   + EG 
Sbjct: 166 AKCDLHA------------VNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGE 211

Query: 90  NILHVAIKYRQLEIFELVVQ 109
             L  A    Q+     + +
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVV 108
            +D   TP+  AT+   +++VK + +    + +   D+E    LH A     ++I E+++
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSK--GSDINIRDNEENICLHWAAFSGCVDIAEILL 164

Query: 109 QMEVPMRRLVRKIDNGGNTLLHM 131
             +      +  ++  G++ LH+
Sbjct: 165 AAKCD----LHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM 110
           + N  +PL  A ++G ++I   +       ++   ++ R  L  A +   LE  +     
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKY---- 62

Query: 111 EVPMRRLVRK------IDNGGNTLLHM 131
                 L++        D  G+T LH+
Sbjct: 63  ------LIKAGALVDPKDAEGSTCLHL 83

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA  +       G       D   TPL  AT+ G + +V ++          ID EG + 
Sbjct: 65  GAIVDQ-----LG------GDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSC 112

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
           +H+A ++    I   ++         V  +D  G T L 
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD----VDMMDQNGMTPLM 147

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 18/89 (20%)

Query: 49  SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
             +D +   +  AT+ G  E  +E+       V   D E   +LH A    ++++ +   
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKY-- 60

Query: 109 QMEVPMRRLV-------RKIDNGGNTLLH 130
                    +       +   +  +T LH
Sbjct: 61  --------YISKGAIVDQLGGDLNSTPLH 81

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
             + N                +  T L  A  +G   ++  +      A V+  + +G +
Sbjct: 166 NVSVNLGD-----------KYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGES 212

Query: 91  ILHVAIKYRQLEIFEL 106
            L +A + + + +   
Sbjct: 213 ALDLAKQRKNVWMINH 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 28/107 (26%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+ NA             + +  TPL LA  +    +V        +            
Sbjct: 156 GADVNA------------MDCDENTPLMLAVLARRRRLVAYLMKAGADP--------TIY 195

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           +   R+ LH A   R   +   ++         + ++D  G T L +
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA  +     +K     S      T L  A +   + IVK +        +  D++G+ 
Sbjct: 260 KGAKVDYDGAARK----DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
            + +A +  ++E+   ++Q        V  +D   +T   
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQ 351

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 15/80 (18%)

Query: 28  IHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDD 86
           +   G+N +              +++ +TP+ LA + G IE+V  +      A VE +D 
Sbjct: 299 VGEKGSNKDK------------QDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASVEAVDA 344

Query: 87  EGRNILHVAIKYRQLEIFEL 106
                  +A       I ++
Sbjct: 345 TDHTARQLAQANNHHNIVDI 364

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 36/114 (31%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-------VEH 83
              N                  +  T L     +   E  +++     +        V  
Sbjct: 115 ESVNIID-------------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 84  IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           +D +    L +A+  R+  +             L++        +    + LH 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAY----------LMKAGADPTIYNKSERSALHQ 205

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 34/162 (20%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEH 83
           +G N NA            A+ +  TPL  A     +++ K        +F     A+ +
Sbjct: 92  FGVNVNA------------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-----AMTY 134

Query: 84  IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK 143
            D +        ++    +  + +  ++      +  ++ G    L     +  D +P K
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEK----MGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 144 MEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFA 185
                 ++  E        +     +    +  G+ P  L  
Sbjct: 191 EGDCMTIIHREDE------DEIEWWWARLNDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
           +G                  N      L  ++  G  ++V+ I            +DEG 
Sbjct: 27  HGMRVKF-------------NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGI 71

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
             LH A+     EI + +VQ  V     V   D+ G T LH 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVN----VNAADSDGWTPLHC 109

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 28/106 (26%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----ID 85
           +GA  N                +  TPLF A  SG  + V  +       ++H      +
Sbjct: 114 HGAQVNG------------VTADWHTPLFNACVSGSWDCVNLL-------LQHGASVQPE 154

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            +  + +H A +   +E    ++         +    +   T L++
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 40/112 (35%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----ID 85
           YG N +                +  TPL+LA ++     VK++       +E        
Sbjct: 179 YGGNIDH------------KISHLGTPLYLACENQQRACVKKL-------LESGADVNQG 219

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
               + LH  ++    E+  L          L+         +  G   + +
Sbjct: 220 KGQDSPLHAVVRTASEELACL----------LMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 28/105 (26%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           G   N                +  +PL  A   G +  VK +     Q V  +  +    
Sbjct: 82  GWAVNI------------ITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTP 128

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK-----IDNGGNTLLHM 131
           L  A      +   L          L++       ++   + +H 
Sbjct: 129 LFNACVSGSWDCVNL----------LLQHGASVQPESDLASPIHE 163

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           + A+ N              ++    PL LA K G + +V+ +       V H + +G  
Sbjct: 92  FQADVNI------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

Query: 91  ILHVAIKYRQLEIFEL 106
              +A  Y + E+  L
Sbjct: 140 ACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 42/114 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GANP+              +      +  A ++G ++ ++ +       +E        
Sbjct: 59  RGANPDL------------KDRTGFAVIHDAARAGFLDTLQTL-------LEFQADVNIE 99

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL-------VRKIDNGGNTLLHM 131
           D+EG   LH+A K   L + E           L       V   ++ G+T   +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEF----------LVKHTASNVGHRNHKGDTACDL 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 29/107 (27%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA+ N              N  +++P   A   G  EI+  +       +   +  G N 
Sbjct: 62  GADINL------------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK-------IDNGGNTLLHM 131
           L  A +   ++  +L          L+          ++ G T L  
Sbjct: 110 LIPAAEKGHIDNVKL----------LLEDGREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 32/108 (29%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
               +              +    TPL +A  +  IEI K + +    A +   +    +
Sbjct: 29  TYQVDE------------VDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDS 74

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRL-------VRKIDNGGNTLLHM 131
               A    + EI             +       + K +  G   L  
Sbjct: 75  PYLYAGAQGRTEILAY----------MLKHATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 21/93 (22%)

Query: 49  SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ-----LEI 103
             N      L  A + G I+ VK +     + ++  +D G   L  A+  R+      +I
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160

Query: 104 FELVVQMEVPMRRLVRK------IDNGGNTLLH 130
            +L          L+         DN G T + 
Sbjct: 161 VKL----------LMENGADQSIKDNSGRTAMD 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 31/108 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              N +AS            +    TPL LA     + IV+ +      A V   D  G 
Sbjct: 47  LNVNCHAS------------DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGL 92

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
             LH A  Y   E+ EL          L++       +D    T LH 
Sbjct: 93  VPLHNACSYGHYEVTEL----------LLKHGACVNAMDLWQFTPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 31/109 (28%)

Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVE 82
           R GAN N              N +  TPL +A +    ++++       ++         
Sbjct: 235 RKGANVNE------------KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM--------N 274

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
            +D  G+  LH A     L+   L++            I   G T   M
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 41/113 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ +A             +     PL  A   G  E+ + +       ++H      +
Sbjct: 80  HGADVHA------------KDKGGLVPLHNACSYGHYEVTELL-------LKHGACVNAM 120

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           D      LH A    ++E+  L          L+        ++  G + + M
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSL----------LLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 29/101 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+P               N + ++ + +A      E +              + +G +
Sbjct: 146 HGADPTL------------VNCHGKSAVDMAPTPELRERLT------------YEFKGHS 181

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           +L  A +    ++ + +    +  ++          T LH 
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQ-----PQSHETALHC 217

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 28/106 (26%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
            A                  +  +  L  A +SG  E +  +           D      
Sbjct: 14  SAKAVL------------TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           LH+A  Y ++ I +L          L++        D GG   LH 
Sbjct: 62  LHLAAGYNRVRIVQL----------LLQHGADVHAKDKGGLVPLHN 97

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 19/115 (16%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
             +                 + ++ T L  A  +G  EIV+ +  +     V   DD G 
Sbjct: 29  DKSLATR------------TDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGW 74

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM 144
           + LH+A      EI + ++         V  ++  G T LH    K    +   +
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAH----VNAVNQNGCTPLHYAASKNRHEIAVML 125

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA             + +  TPL LA K+G  EIVK +      A V     +G  
Sbjct: 32  GADVNA------------RSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNT 77

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
             H+A K    EI +L+          V     G +   H
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGAD----VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 38.1 bits (90), Expect = 6e-04
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 19/89 (21%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVV 108
            + +  TPL  A K+G  E VK++ +    A V     +G   LH+A K    EI +L  
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKL-- 60

Query: 109 QMEVPMRRL------VRKIDNGGNTLLHM 131
                   L      V      GNT  H+
Sbjct: 61  --------LLAKGADVNARSKDGNTPEHL 81

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 31/108 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+ NA             + +  TPL LA  +G +EIV+ +      A V  +D  G 
Sbjct: 36  NGADVNA------------EDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGM 81

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
             L +A  +  LEI E+          L++        D  G+T LH+
Sbjct: 82  TPLRLAALFGHLEIVEV----------LLKNGADVNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.0 bits (95), Expect = 3e-04
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+ NA             +    TPL LA   G +EIV+ +      A V   D  G+
Sbjct: 102 NGADVNA------------NDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGK 147

Query: 90  NILHVAIKYRQLEIFEL 106
               ++I     ++ E+
Sbjct: 148 TAFDISIDNGNEDLAEI 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM 110
           N  A+  L  A K+G +E VK++  V       I+      LH A  Y ++ + E     
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY---- 60

Query: 111 EVPMRRLVRK------IDNGGNTLLH 130
                 L++        D GG   LH
Sbjct: 61  ------LLQHGADVHAKDKGGLVPLH 80

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 41/112 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ +A             +     PL  A   G  E+ + +       V+H       
Sbjct: 64  HGADVHA------------KDKGGLVPLHNACSYGHYEVAELL-------VKHGAVVNVA 104

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLH 130
           D      LH A    + EI +L          L        K +  GNT L 
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKL----------LLQHGADPTKKNRDGNTPLD 146

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 30  RYGANPNASSVDQ--KGIGESSANDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHID 85
             GA+  A++     K           E PL LA  +  + IVK  + N +  A +   D
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 86  DEGRNILHVAIKYRQLEIF--ELVVQMEVPMRRLVRKI----------DNGGNTLLHM 131
             G  +LH  ++     +   + V  M   +  L  K+          +  G T L +
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 27/150 (18%)

Query: 49  SANDNAETPLFLATKSGCIEIVK-------------EIFNVYPQAVEHIDDEGRNILHVA 95
            +    +T L +A +   + +V                              G   L +A
Sbjct: 96  DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155

Query: 96  IKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE-----KMEGPALV 150
               QL I + ++Q        +   D+ GNT+LH       + V        M    L+
Sbjct: 156 ACTNQLAIVKFLLQ-NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 151 LQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
           L  +L    ++EE+         N  G TP
Sbjct: 215 LGAKLHPTLKLEEI--------TNRKGLTP 236

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 22/105 (20%)

Query: 49  SANDNAE-----TPLFLATKSGCIEIVKEIFNVYPQAVEHI-------DDEGRNILHVAI 96
           SA +          +F A      + ++ +     ++ + +        + G+  L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 97  KYRQ----------LEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
                         L++      ++  +          G T LH+
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM 110
               +     A K+G ++ VK+        V    + GR  LH A    QLEI E     
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEF---- 58

Query: 111 EVPMRRLVRK------IDNGGNTLLHM 131
                 L+ K       D    T L  
Sbjct: 59  ------LLLKGADINAPDKHHITPLLS 79

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 19/102 (18%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
                N              ++   TPL  A   G I +V+ +      A  + +     
Sbjct: 25  QENVINH------------TDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRE 70

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           + L +A      +I ++++   V     V + D  G T L  
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVD----VNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 31/107 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+P                   E+ L LA   G  +IVK + +      V   D  G 
Sbjct: 58  NGADPQL------------LGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGG 103

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLH 130
             L  A+    ++  ++          L+          + G   + 
Sbjct: 104 TPLLYAVHGNHVKCVKM----------LLESGADPTIETDSGYNSMD 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 15/76 (19%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           G + N              + N  TPL  A     ++ VK +      A      D G N
Sbjct: 92  GVDVNE------------YDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYN 137

Query: 91  ILHVAIKYRQLEIFEL 106
            + +A+      + ++
Sbjct: 138 SMDLAVALGYRSVQQV 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 19/86 (22%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVVQME 111
                +      G +  +        +  + H D+EG   L  A  + Q+ + E      
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEF----- 54

Query: 112 VPMRRLVRK------IDNGGNTLLHM 131
                L++       +  G  + L +
Sbjct: 55  -----LLQNGADPQLLGKGRESALSL 75

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 10/109 (9%), Positives = 24/109 (22%), Gaps = 29/109 (26%)

Query: 28  IHRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH---- 83
             +     N              N   +T L  A   G  +IV+ +       +      
Sbjct: 126 FTQPNIELNQ------------QNKLGDTALHAAAWKGYADIVQLL-------LAKGART 166

Query: 84  --IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
              + E +    +A       + +     +     +    +        
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDA----VRTLSNAEDYLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 30/102 (29%)

Query: 43  KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------IDDEGRNILHVAI 96
                +   ++ + PL  A K G +  ++E        +++      +D  G   L+ A 
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLREC-------LDNRVGVNGLDKAGSTALYWAC 114

Query: 97  KYRQLEIFELVVQMEVPMRRLVRKI-------DNGGNTLLHM 131
                +I E+          L  +        +  G+T LH 
Sbjct: 115 HGGHKDIVEM----------LFTQPNIELNQQNKLGDTALHA 146

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 30/106 (28%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           G +P               N   ET L +A+  G I  V+ +       +++       D
Sbjct: 1   GIDPFT-------------NHRGETLLHIASIKGDIPSVEYL-------LQNGSDPNVKD 40

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
             G   LH A  +  L++ EL++Q +     LV       ++ LH 
Sbjct: 41  HAGWTPLHEACNHGHLKVVELLLQHKA----LVNTTGYQNDSPLHD 82

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 21/80 (26%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
           + A  N                  ++PL  A K+G ++IVK +     +        ++ 
Sbjct: 65  HKALVNT------------TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-----RNAVNI 107

Query: 87  EGRNILHVAIKYRQLEIFEL 106
            G   +          +  L
Sbjct: 108 FGLRPVDYTDDESMKSLLLL 127

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 32  GANPNA--SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDDE 87
           GA+ +A       +   E       E PL LA  +    IV     N + QA +   D  
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 88  GRNILHVAIKYR--QLEIFELVVQM----------EVPMRRLVRKIDNGGNTLLHM 131
           G  +LH  +       E  + V +M            P   L   ++N G + L M
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 29/106 (27%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA+ N             AN +  T L  A     +++VK +       +   D+EG   
Sbjct: 63  GADINY------------ANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIP 109

Query: 92  LHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           LH A     L+I E           L+ +      +++ G+T L +
Sbjct: 110 LHAAASCGYLDIAEY----------LISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 31/104 (29%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
            GAN N              ++    PL  A   G ++I + +     +     V  ++ 
Sbjct: 95  NGANINQ------------PDNEGWIPLHAAASCGYLDIAEYLISQGAH-----VGAVNS 137

Query: 87  EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
           EG   L +A +    E+ +            V +          
Sbjct: 138 EGDTPLDIAEEEAMEELLQN----------EVNRQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 29/104 (27%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA+  A             N   +TPL +A +    E+++            ++ +G +
Sbjct: 128 QGAHVGA------------VNSEGDTPLDIAEEEAMEELLQN----------EVNRQGVD 165

Query: 91  I---LHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           I        +    +  + +    +       +    G T LH+
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHIN----DVRHAKSGGTALHV 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 25/92 (27%)

Query: 50  ANDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 105
              +       A  SG  E V  +     +     + + + +G   LH A     +++ +
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALHQACIDDNVDMVK 90

Query: 106 LVVQMEVPMRRLVRK------IDNGGNTLLHM 131
                      LV         DN G   LH 
Sbjct: 91  F----------LVENGANINQPDNEGWIPLHA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 31/107 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              N                  +  T L +A   G  E++K +     +  V   D +G 
Sbjct: 188 GHINDVR------------HAKSGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGW 233

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLH 130
             LH A  + + E   +          LV        ++  G T   
Sbjct: 234 TPLHAAAHWGKEEACRI----------LVENLCDMEAVNKVGQTAFD 270

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN +              N+  ETPLFLA + G  E  K + + +    +  D   R 
Sbjct: 179 NGANKDM------------QNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRL 225

Query: 91  ILHVAIKYRQLEIFEL 106
              +A +    +I  L
Sbjct: 226 PRDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 30/93 (32%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------IDDEGRNILHVAIKYRQLEIF 104
           +   ET L LA +    +  K +       +E        D+ GR  LH A+      +F
Sbjct: 54  DRTGETALHLAARYSRSDAAKRL-------LEASADANIQDNMGRTPLHAAVSADAQGVF 106

Query: 105 ELVVQMEVPMRRLVRK-------IDNGGNTLLH 130
           ++          L+R          + G T L 
Sbjct: 107 QI----------LIRNRATDLDARMHDGTTPLI 129

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 41/130 (31%)

Query: 31  YGANPN------------ASSVDQKGIGE----------SSANDNAETPLFLATKSGCIE 68
             A+ N            A S D +G+ +           +   +  TPL LA +     
Sbjct: 79  ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 138

Query: 69  IVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------I 121
           +++++ N    A V  +DD G++ LH A     ++   +          L++        
Sbjct: 139 MLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVV----------LLKNGANKDMQ 186

Query: 122 DNGGNTLLHM 131
           +N   T L +
Sbjct: 187 NNREETPLFL 196

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 30/107 (28%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+PN              + +  +P+  A ++G ++ +K +      A V   D  G 
Sbjct: 57  QGASPNV------------QDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGA 102

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRL-----VRKIDNGGNTLLHM 131
             +H+A++     +             L     + + D  G T L +
Sbjct: 103 LPIHLAVQEGHTAVVSF----------LAAESDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 16/77 (20%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
           +GA+ N              +     P+ LA + G   +V  +     ++ +   D  G 
Sbjct: 90  HGADVNV------------PDGTGALPIHLAVQEGHTAVVSFLAA---ESDLHRRDARGL 134

Query: 90  NILHVAIKYRQLEIFEL 106
             L +A++    ++ ++
Sbjct: 135 TPLELALQRGAQDLVDI 151

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ 83
           R   +P      +  +       N    L  A  +G +E+V+       QAV+       
Sbjct: 6   RKAGSPRK--ARRARL-------NPLVLLLDAALTGELEVVQ-------QAVKEMNDPSQ 49

Query: 84  IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH 130
            ++EG   LH AI      I + ++         V   D+ G T LH
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGAN----VNSPDSHGWTPLH 92

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 17/113 (15%), Positives = 24/113 (21%), Gaps = 42/113 (37%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
             +P+              N+   T L  A       IV  +       +         D
Sbjct: 44  MNDPSQ------------PNEEGITALHNAICGANYSIVDFL-------ITAGANVNSPD 84

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVR-------KIDNGGNTLLHM 131
             G   LH A       I             LV+          + G T    
Sbjct: 85  SHGWTPLHCAASCNDTVICMA----------LVQHGAAIFATTLSDGATAFEK 127

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 18/89 (20%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
            ++ +T L LA        +  +       + ++  +D G+  LH+A    +    E   
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-- 63

Query: 109 QMEVPMRRLVRK------IDNGGNTLLHM 131
                   L          + GG+T LH+
Sbjct: 64  --------LYAAGAGVLVAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 22/82 (26%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           + A      +D +       ND  +T L LA   G    V+++                 
Sbjct: 31  FSAGHEY--LDLQ-------NDLGQTALHLAAILGEASTVEKL-------YAAGAGVLVA 74

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           +  G   LH+A + R      +
Sbjct: 75  ERGGHTALHLACRVRAHTCACV 96

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 42/114 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH---ID-- 85
           +     A             N +  TPL +A      E+V+ +        +    ++  
Sbjct: 147 WRLQLEA------------ENYDGHTPLHVAVIHKDAEMVRLL-------RDAGADLNKP 187

Query: 86  --DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
               GR  LH+A++ +   + EL          L++          GG T L  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLEL----------LLKAGADPTARMYGGRTPLGS 231

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GAN +              N+  ETPLFLA + G  E   ++       ++H       
Sbjct: 147 NGANKDM------------QNNREETPLFLAAREGSYETA-KVL------LDHFANRDIT 187

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           D   R    +A +    +I  L
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRL 209

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 26/91 (28%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDDEGRNILHVAIKYRQLEIFEL 106
           +   ET L LA +    +  K +     +         D+ GR  LH A+      +F++
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 107 VVQMEVPMRRLVRK-------IDNGGNTLLH 130
                     L+R          + G T L 
Sbjct: 77  ----------LIRNRATDLDARMHDGTTPLI 97

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 51/135 (37%)

Query: 31  YGANPN------------ASSVDQKGIGE----------SSANDNAETPLFLATKSGCIE 68
             A+ N            A S D +G+ +           +   +  TPL LA +     
Sbjct: 47  ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106

Query: 69  IVKEIFNVYPQAVEH------IDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK-- 120
           +++++       +        +DD G++ LH A     ++   +          L++   
Sbjct: 107 MLEDL-------INSHADVNAVDDLGKSALHWAAAVNNVDAAVV----------LLKNGA 149

Query: 121 ----IDNGGNTLLHM 131
                +N   T L +
Sbjct: 150 NKDMQNNREETPLFL 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 20/108 (18%), Positives = 30/108 (27%), Gaps = 32/108 (29%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA  N               +N E PL  A      +IVK +           DD+G  
Sbjct: 53  AGALKNLL-------------EN-EFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNT 97

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRLV-------RKIDNGGNTLLHM 131
            L+ A+    ++  +L           V            G  T  + 
Sbjct: 98  ALYYAVDSGNMQTVKL----------FVKKNWRLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 30/108 (27%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
                                   +T  + A     + IV    +              +
Sbjct: 117 KNWRLMFY-----------GKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLS 163

Query: 91  ILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNT-LLHM 131
            +H+ IK   +++  L          L          ++      + +
Sbjct: 164 CIHITIKNGHVDMMIL----------LLDYMTSTNTNNSLLFIPDIKL 201

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 40/162 (24%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSG---CIEIVKEIFNVYPQAVEHIDDE 87
           +G+N                ++  E+ L  A KS         + + +     +   D  
Sbjct: 153 HGSNRLY------------GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200

Query: 88  GRNILHVAIKYRQLEIFELVVQ--MEVPMRRLVR-------KIDNGGNTLLHMTGIKRSD 138
            R ILH  I    +       +  +++ M  +V+          N   +  +    +R D
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260

Query: 139 YVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
            + E ++   ++    +L              N +++ G T 
Sbjct: 261 SILENLDLKWII--ANML--------------NAQDSNGDTC 286

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 23/89 (25%)

Query: 48  SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
           S  + N E    +  +    + +  + N       + D   R  L VA         +  
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVACMLGMENAIDK- 53

Query: 108 VQMEVPMRRL------VRKIDNGGNTLLH 130
                    L      +   D  G+T L 
Sbjct: 54  ---------LVENFDKLEDKDIEGSTALI 73

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 33/107 (30%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDDEGR 89
                              +    T L  A K+  + I ++ +      + V   D  G+
Sbjct: 58  FDKLED------------KDIEGSTALIWAVKNNRLGIAEKLLSK---GSNVNTKDFSGK 102

Query: 90  NILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLH 130
             L  +I +   E+             L      V   +  G T L 
Sbjct: 103 TPLMWSIIFGYSEMSYF----------LLEHGANVNDRNLEGETPLI 139

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 27/83 (32%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEH 83
           +GAN N              N   ETPL +A+K G  EIVK       +I          
Sbjct: 123 HGANVND------------RNLEGETPLIVASKYGRSEIVKKLLELGADI--------SA 162

Query: 84  IDDEGRNILHVAIKYRQLEIFEL 106
            D  G      A  + + E+ ++
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKI 185

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 47  ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFE 105
            +  ++   TPL  A+  G IE V+ +      A    +  E  + L +A      +I  
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLASTGGYTDIVG 86

Query: 106 LVVQMEVPMRRLVRKIDNGGNTLLHM 131
           L+++ +V     +   D  G T L  
Sbjct: 87  LLLERDVD----INIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 43/113 (38%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+P+                  E+ L LA+  G  +IV        +I           
Sbjct: 59  GADPHI------------LAKERESALSLASTGGYTDIVGLLLERDVDI--------NIY 98

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
           D  G   L  A++   ++  E           L+ +        + G T + +
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEA----------LLARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 15/77 (19%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              + N              + N  TPL  A +   ++ V+ +      A +    D G 
Sbjct: 91  RDVDINI------------YDWNGGTPLLYAVRGNHVKCVEALLAR--GADLTTEADSGY 136

Query: 90  NILHVAIKYRQLEIFEL 106
             + +A+     ++ ++
Sbjct: 137 TPMDLAVALGYRKVQQV 153

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 16/81 (19%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
             +      G ++ +KE        V   D+ G   L  A  + ++E     V+      
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE----TVRF----- 54

Query: 116 RLVRK------IDNGGNTLLH 130
            L+        +     + L 
Sbjct: 55  -LLEWGADPHILAKERESALS 74

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA             + N  TPL LA ++G +E+VK +      A V   D  GR 
Sbjct: 58  GADVNA------------KDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRT 103

Query: 91  ILHVAIKYRQLEIFEL 106
            LH+A +   LE+ +L
Sbjct: 104 PLHLAARNGHLEVVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.1 bits (90), Expect = 8e-04
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 31/107 (28%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+ NA             + N  TPL LA ++G +E+VK       ++           
Sbjct: 25  GADVNA------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV--------NAK 64

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           D  GR  LH+A +   LE+ +L+++        V   D  G T LH+
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHL 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ NA             +    T L  AT+    E+V+ +       +++       
Sbjct: 89  HGADVNA------------KDMLKMTALHWATEHNHQEVVELL-------IKYGADVHTQ 129

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
               +    ++I     ++ E+
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 19/112 (16%), Positives = 28/112 (25%), Gaps = 42/112 (37%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           GA                 +    +PL LA + G      E+       +          
Sbjct: 25  GAPFTT-------------DWLGTSPLHLAAQYGHFSTT-EVL------LRAGVSRDART 64

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK------IDNGGNTLLHM 131
              R  LH+A       I E+          L++        D    T LH 
Sbjct: 65  KVDRTPLHMAASEGHANIVEV----------LLKHGADVNAKDMLKMTALHW 106

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 15/90 (16%)

Query: 48  SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
           S+A       +  A   G  E   E+F       +       NIL+  ++    E    +
Sbjct: 1   SNAMSE-YRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 108 VQMEVPMRRLVRK------IDNGGNTLLHM 131
                    L+ K          G TL   
Sbjct: 58  SMF------LINKGADIKSRTKEGTTLFFP 81

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 18/82 (21%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY-----PQA-VEHI 84
            GA+  A  + +            +  +F    +  ++  + I             +   
Sbjct: 103 KGADITA--LYKPY----------KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           D  G   L    + ++    ++
Sbjct: 151 DKWGLTALEFVKRCQKPIALKM 172

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 32  GANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA             + N  TPL LA ++G +E+VK +      A V   D  GR 
Sbjct: 25  GADVNA------------KDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRT 70

Query: 91  ILHVAIKYRQLEIFEL 106
            LH+A +   LE+ +L
Sbjct: 71  PLHLAARNGHLEVVKL 86

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 41/112 (36%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ NA             ++   TPL+LAT  G +EIV+ +       +++      +
Sbjct: 36  NGADVNA------------KDEYGLTPLYLATAHGHLEIVEVL-------LKNGADVNAV 76

Query: 85  DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRL------VRKIDNGGNTLLH 130
           D  G   LH+A     LEI E+          L      V   D  G T   
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEV----------LLKHGADVNAQDKFGKTAFD 118

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ NA             +    TPL LA   G +EI + +       ++H       
Sbjct: 69  NGADVNA------------VDAIGFTPLHLAAFIGHLEIAEVL-------LKHGADVNAQ 109

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
           D  G+    ++I     ++ E+
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEI 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.9
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.88
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
2pnn_A	273	Transient receptor potential cation channel subfa	99.88
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.88
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.87
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
2pnn_A	273	Transient receptor potential cation channel subfa	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.83
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.7
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1.3e-28  Score=210.76  Aligned_cols=132  Identities=23%  Similarity=0.331  Sum_probs=123.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |+++.|+++|+|+|.+|.   .+.+|+|.|+..+..+   .|+++|+|++.+|.+|+||||+|+..|+.+++++|+ +.|
T Consensus        18 ~~v~~Ll~~Gadvn~~d~---~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~g   93 (169)
T 4gpm_A           18 DRVKDLIENGADVNASDS---DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKG   93 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHH-HCc
Confidence            789999999999999997   4557788888777655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +++|.+|.+|+||||+|+++|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus        94 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~g~~~iv  152 (169)
T 4gpm_A           94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEEVV  152 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999    999999999999999999998877

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=217.36  Aligned_cols=160  Identities=19%  Similarity=0.186  Sum_probs=133.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+|+|.+|.+   +.+|||+|+..|..   ++|+++|++++.++.+|.||+|+|+..++.++++.|+ +.|
T Consensus        67 ~~v~~Ll~~Gadvn~~d~~---G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g  142 (269)
T 4b93_B           67 KRLAKVPASGLGVNVTSQD---GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL-DSN  142 (269)
T ss_dssp             --------CCCCTTCCCTT---SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCcCCC---CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHH-HCC
Confidence            3678899999999999974   45778888777654   5899999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..|+.+++      .+++..+    
T Consensus       143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t~Lh~A~~~g~~~~v------~~Ll~~G----  208 (269)
T 4b93_B          143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVV------ELLLLHG----  208 (269)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHH------HHHHHTT----
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCcHHHHHHHcCCHHHH------HHHHHCC----
Confidence            99999999999999999999999999999999999    999999999999999999998877      2222111    


Q ss_pred             HHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                               ..++.+|++|+||+|+|++..
T Consensus       209 ---------ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          209 ---------ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             ---------CCSCCCCTTSCCSGGGSCTTC
T ss_pred             ---------CCCCCcCCCCCCHHHHHHhCC
Confidence                     115789999999999997643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=1.4e-26  Score=198.12  Aligned_cols=139  Identities=24%  Similarity=0.324  Sum_probs=123.1

Q ss_pred             HHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHH
Q 016455           27 KIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        27 ~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i  103 (389)
                      .|+.|+..|..+   .|+++|+|+|.+|.+|+||||+|+..|+.++++.|+ ..|++++.+|.+|+||||+|+++|+.++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            488888888766   899999999999999999999999999999999999 7899999999999999999999999999


Q ss_pred             HHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHH
Q 016455          104 FELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEEL  183 (389)
Q Consensus       104 v~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~l  183 (389)
                      +++|+++|++    +|.+|.+|+||||+|++.|+.+++      .++++.+             ..++.+|++|+||+++
T Consensus        86 v~~Ll~~gad----vn~~d~~G~TpLh~A~~~g~~~~v------~~Ll~~g-------------ad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           86 VKLLISKGAD----VNAKDSDGRTPLHHAAENGHKEVV------KLLISKG-------------ADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             HHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTSCCHHHH
T ss_pred             HHHHHHCcCC----CCCCCCCCCCHHHHHHHcCCHHHH------HHHHHcC-------------CCccccCCCCCCHHHH
Confidence            9999999999    999999999999999999988777      2222111             1157889999999999


Q ss_pred             Hhhhhh
Q 016455          184 FATANN  189 (389)
Q Consensus       184 a~~~~~  189 (389)
                      |.+.+.
T Consensus       143 A~~~g~  148 (169)
T 4gpm_A          143 AREHGN  148 (169)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            987653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=208.30  Aligned_cols=175  Identities=15%  Similarity=-0.019  Sum_probs=136.3

Q ss_pred             HHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCC
Q 016455            4 ARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQA   80 (389)
Q Consensus         4 v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   80 (389)
                      ++.|+++|++++..+..+.++.++||.|+..|..+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCC
Confidence            47899999999999988889999999999888766   889999999999999999999999999999999999 77999


Q ss_pred             ccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccchhc--cccCCCcccccCCChhHHhhHHHHH
Q 016455           81 VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLLHMT--GIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        81 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A--~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      ++.+|..|+||||+|+..|+.+++++|++.|++    ++.+| .+|+||||+|  +..++.++++      ++++.+...
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~g~tpL~~A~a~~~~~~~~v~------~Ll~~ga~~  149 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA----IFATTLSDGATAFEKCDPYREGYADCAT------YLADVEQSM  149 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCSSTTCCTGGGCCTTSTTHHHHHH------HHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHhcChHHHHH------HHHHcCCCc
Confidence            999999999999999999999999999999998    89887 6999999999  8888888773      222222211


Q ss_pred             HHHH----------------Hhhc---chhhhhhccCCCCChHHHHhhhhh
Q 016455          158 YERV----------------EEVS---IPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       158 ~~~v----------------~~~~---~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ...-                +.+.   ....++.+|.+|+||+++|++.+.
T Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          150 GLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             TTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             ccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCC
Confidence            0000                0000   001145678899999999987643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=5.5e-26  Score=203.25  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=125.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|.   .+.+|+|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        54 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  129 (231)
T 3aji_A           54 EIVEFLLQLGVPVNDKDD---AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGG  129 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHhCCCCCCcCC---CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            678888888888888776   4456677777666544   788888888888888888888888888888888888 678


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~  158 (389)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.     
T Consensus       130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~-----  194 (231)
T 3aji_A          130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEA------KFLVTQ-----  194 (231)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHH------HHHHHT-----
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHHH------HHHHHC-----
Confidence            88888888888888888888888888888888887    888888888888888888876655      111111     


Q ss_pred             HHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          159 ERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                              ...++.+|.+|+||+++|.+.+.
T Consensus       195 --------ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          195 --------GASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             --------TCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             --------CCCCCCCCCCCCCHHHHHHhhHH
Confidence                    11146789999999999976544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=4.1e-26  Score=209.90  Aligned_cols=119  Identities=17%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             CCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccC-CChHHHHHHHhCChHHHHHHHccCCcccccccccccCC
Q 016455           47 ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE-GRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G  125 (389)
                      ++.+|..|.||||+|+..|+.+++++|+ +.|++++.++.. |+||||+|+.+|+.+++++|+++|++    ++.+|.+|
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g  225 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----PTARMYGG  225 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----CcccccCC
Confidence            4455556666666666666666666666 455666666543 66666666666666666666666666    66666666


Q ss_pred             cccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          126 NTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       126 ~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +||||+|++.++.+++      .+++..+             ..++.+|.+|+||++++.....
T Consensus       226 ~tpL~~A~~~~~~~~v------~~Ll~~g-------------a~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          226 RTPLGSALLRPNPILA------RLLRAHG-------------APEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCHHHHHHTSSCHHHH------HHHHHTT-------------CCCCCCC---------------
T ss_pred             CCHHHHHHHcCCcHHH------HHHHHcC-------------CCcCcCCCcccccccccCCccc
Confidence            6666666666655544      1111110             0145677777777777665443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=6.4e-26  Score=210.84  Aligned_cols=162  Identities=18%  Similarity=0.203  Sum_probs=136.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+..+   +|+++|+++|.+|..|.||||+|+..|+.+++++|+ ..|
T Consensus        54 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~g  129 (299)
T 1s70_B           54 EEVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQG  129 (299)
T ss_dssp             HHHHHHHHHCCCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCC
Confidence            689999999999999886   4567899998888765   899999999999999999999999999999999999 667


Q ss_pred             CCccccc------------------------------------------------------------cCCChHHHHHHHh
Q 016455           79 QAVEHID------------------------------------------------------------DEGRNILHVAIKY   98 (389)
Q Consensus        79 ~~~~~~d------------------------------------------------------------~~G~t~Lh~A~~~   98 (389)
                      ++++.+|                                                            ..|+||||+|+.+
T Consensus       130 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            7776555                                                            3577889999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF  178 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    +|.+|.+|+||||+|+..++.+++      .+++..+             ..++.+|.+|+
T Consensus       210 g~~~~v~~Ll~~g~d----~~~~d~~g~tpL~~A~~~~~~~~v------~~Ll~~g-------------ad~~~~d~~g~  266 (299)
T 1s70_B          210 GYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEAC------RILVENL-------------CDMEAVNKVGQ  266 (299)
T ss_dssp             TCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTSC
T ss_pred             CcHHHHHHHHHcCCC----CCCcCCCCCcHHHHHHhcCCHHHH------HHHHHcC-------------CCCCCcCCCCC
Confidence            999999999999998    999999999999999999988776      2222111             11578899999


Q ss_pred             ChHHHHhhhhhh
Q 016455          179 TPEELFATANNE  190 (389)
Q Consensus       179 Tpl~la~~~~~~  190 (389)
                      ||+|+|.+...+
T Consensus       267 t~l~~A~~~~~~  278 (299)
T 1s70_B          267 TAFDVADEDILG  278 (299)
T ss_dssp             CTTTSCCSGGGH
T ss_pred             CHHHHHHHHHHH
Confidence            999999765433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=4.5e-26  Score=207.36  Aligned_cols=181  Identities=14%  Similarity=0.158  Sum_probs=108.8

Q ss_pred             HHHHHHHhCCCCCccc-cccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEIT-DSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~-d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|++++.. |.   .+.+|||.|+..+..+   .|+++|++++.+|..|+||||+|+..|+.+++++|++..
T Consensus        37 ~~v~~Ll~~g~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           37 AVISDFIYQGASLHNQTDR---TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             ---------------CCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             HHHHHHHHccCCcccccCC---CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5677777777776543 33   4556677777666544   677777777777777777777777777777777777444


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC-------------
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------  144 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------  144 (389)
                      +.+++.+|..|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+..++.++++.+             
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            447777777777777777777777777777777776    777777777777777777766655322             


Q ss_pred             CChhHHhhHHHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhhh
Q 016455          145 EGPALVLQEELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       145 ~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +..++.........+.++.+... ...+.+|..|+||+++|.+.+.
T Consensus       190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence            12233333222222222222211 1246789999999999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=3.4e-25  Score=198.36  Aligned_cols=170  Identities=17%  Similarity=0.168  Sum_probs=137.3

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCC-----CcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGE-----SSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~-----n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      ++++.|+++ |+++|.+|.   .+.+|||.|+..+..+   .|+++|+++     +.+|.+|.||||+|+..|+.+++++
T Consensus        17 ~~v~~Ll~~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   93 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRGA---MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA   93 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCCC---CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHH
Confidence            689999998 999999986   5567899998888765   889999987     6778899999999999999999999


Q ss_pred             HHHHCCCCcccccc-------------CCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCc
Q 016455           73 IFNVYPQAVEHIDD-------------EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY  139 (389)
Q Consensus        73 Ll~~~~~~~~~~d~-------------~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~  139 (389)
                      |+ +.+++++.++.             .|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+
T Consensus        94 Ll-~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A           94 LL-ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD----IRAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             HH-HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHTCSCHH
T ss_pred             HH-hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCChH
Confidence            99 77889888765             799999999999999999999999999    9999999999999999998876


Q ss_pred             ccccCCChhHHhhHHHHHHHHHHh-hcchhhhhhccCCCCChHHHHhhhhh
Q 016455          140 VPEKMEGPALVLQEELLWYERVEE-VSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       140 ~~~~l~~~~l~l~~~~~~~~~v~~-~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ++.          ..+.+.-.... .......+.+|.+|+||+|+|++.+.
T Consensus       169 ~~~----------~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          169 FAC----------QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHH----------HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHH----------HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            541          00011100000 00011126789999999999987643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=1.4e-25  Score=200.08  Aligned_cols=163  Identities=18%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcC--CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKG--IGESSANDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~g--a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++|++++.....+..+.+|+|.|+..+..+   .|+++|  ++++.+|..|.||||+|+..|+.+++++|+ +
T Consensus        50 ~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~  128 (228)
T 2dzn_A           50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-E  128 (228)
T ss_dssp             HHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH-H
Confidence            5677788777554443322235556677776666544   677777  777777777888888888888888888777 5


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccC-CcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHH
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~  155 (389)
                      .|++++.+|..|+||||+|+..|+.+++++|++.| ++    ++.+|.+|+||||+|+..++.+++      .+++.   
T Consensus       129 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~~~v------~~Ll~---  195 (228)
T 2dzn_A          129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGDAA------VLLVE---  195 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHHHH------HHHHH---
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCHHHH------HHHHH---
Confidence            67777777878888888888888888888888777 66    777788888888888877776655      11110   


Q ss_pred             HHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          156 LWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                             +  .....+.+|.+|+||+|+|.+.
T Consensus       196 -------~--~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          196 -------K--YGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             -------H--HCCCSCCBCTTSCBGGGGCSST
T ss_pred             -------h--cCCCCCccCCCCCcHHHHHHHH
Confidence                   0  0112578899999999999653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=3.6e-25  Score=198.72  Aligned_cols=181  Identities=17%  Similarity=0.213  Sum_probs=137.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..+.   .+.+|+|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..+
T Consensus        25 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           25 DICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCcCccCC---CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            688999999999888886   4557788888777655   7888999999999999999999999999999999995555


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC-------------C
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------E  145 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------~  145 (389)
                      .+++..|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+             +
T Consensus       102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  177 (237)
T 3b7b_A          102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG  177 (237)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCC
Confidence            88888899999999999999999999999999888    888899999999999988877766332             1


Q ss_pred             ChhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhhhhh
Q 016455          146 GPALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       146 ~~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ..++.........+.++.+.. ....+.+|++|+||+|+|...+.
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence            223333322222222222221 12246778889999998887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=3.5e-25  Score=196.93  Aligned_cols=181  Identities=14%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             HHHHHHHhCCCCCccc-cccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEIT-DSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~-d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|++++.. |.   .+.+|||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..
T Consensus         5 ~~i~~Ll~~g~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQTDR---TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             CCEETTEETTCCTTCCCTT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             HHHHHHHHcCCCcccccCC---CCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3455556666655443 22   3445555555555443   555566666666666666666666666666666666433


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC-------------
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------  144 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------  144 (389)
                      +.+++..|..|+||||+|+..++.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+             
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  157 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  157 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC----CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            335555566666666666666666666666666555    556666666666666655555444221             


Q ss_pred             CChhHHhhHHHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhhh
Q 016455          145 EGPALVLQEELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       145 ~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +..++.........+.++.+... ...+.+|..|+||+++|.+.+.
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence            11122222111111222211111 1246778889999998887543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=2.4e-25  Score=194.75  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=136.3

Q ss_pred             HHHHHHHhCCC-CCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDT-SWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga-~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +.++.|++++. ++|..|.   .+.+|||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..
T Consensus        19 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~   95 (201)
T 3hra_A           19 KKVKEILQDTTYQVDEVDT---EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA   95 (201)
T ss_dssp             HHHHHHHTCTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            56788888765 9998886   4557788888777655   899999999999999999999999999999999999888


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccC-CcccccccccccCCcccchhccccCCC-----cccccCCChhHHh
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME-VPMRRLVRKIDNGGNTLLHMTGIKRSD-----YVPEKMEGPALVL  151 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~d~~G~TpLh~A~~~~~~-----~~~~~l~~~~l~l  151 (389)
                      +.+++..|..|+||||+|+..|+.+++++|+++| ++    ++.+|.+|+||||+|+..++.     +++      .+++
T Consensus        96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~~~v------~~Ll  165 (201)
T 3hra_A           96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLREGNQLYQDIV------KLLM  165 (201)
T ss_dssp             CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC----TTCCCTTSCCHHHHHHHSSCCSHHHHHHH------HHHH
T ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----cCCCCCCCCCHHHHHHHhccchhhHHHHH------HHHH
Confidence            9999999999999999999999999999999998 77    999999999999999988762     222      1110


Q ss_pred             hHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          152 QEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +           .  ...++.+|.+|+||+|+|.+.+.
T Consensus       166 ~-----------~--ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          166 E-----------N--GADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             H-----------T--TCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             H-----------C--CCCCCccCCCCCCHHHHHHHcCC
Confidence            0           0  11257789999999999987643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=6.3e-25  Score=199.81  Aligned_cols=168  Identities=18%  Similarity=0.142  Sum_probs=132.4

Q ss_pred             HHHHHHHhCCCCCcc----ccccCCCCcHHHHHccCC---C---ChhhHhhcCCCCCcC-----------CCCCCcHHHH
Q 016455            2 ELARFLIRRDTSWEI----TDSFQDQSKPKIHRYGAN---P---NASSVDQKGIGESSA-----------NDNAETPLFL   60 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~----~d~~~~~~~~~lh~a~~~---~---~~~~Ll~~ga~~n~~-----------d~~G~tpLh~   60 (389)
                      +++++|+++|+++|.    .|.   .+.+|||.|+..   +   .+++|+++|++++..           |..|.||||+
T Consensus        20 ~ll~~l~~~g~~i~~~~~~~d~---~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~   96 (256)
T 2etb_A           20 GLLEYLRWNSKYLTDSAYTEGS---TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI   96 (256)
T ss_dssp             THHHHHHHHTCCTTSGGGSBTT---TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHH
T ss_pred             HHHHHHHHcCCCcccccccCCC---CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHH
Confidence            467888899999998    675   556778888655   4   466999999887633           4779999999


Q ss_pred             HHHcCcHHHHHHHHHHCCCCccccccC-------------CChHHHHHHHhCChHHHHHHHc---cCCcccccccccccC
Q 016455           61 ATKSGCIEIVKEIFNVYPQAVEHIDDE-------------GRNILHVAIKYRQLEIFELVVQ---MEVPMRRLVRKIDNG  124 (389)
Q Consensus        61 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G~t~Lh~A~~~~~~~iv~~Ll~---~g~~~~~~~~~~d~~  124 (389)
                      |+..|+.+++++|+ +.|++++.+|..             |+||||+|+..|+.+++++|++   .|++    +|.+|.+
T Consensus        97 A~~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~----~n~~d~~  171 (256)
T 2etb_A           97 AIEKRSLQCVKLLV-ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----LEATDSL  171 (256)
T ss_dssp             HHHTTCHHHHHHHH-HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCCTT
T ss_pred             HHHcCCHHHHHHHH-HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----cCccCCC
Confidence            99999999999999 779999999887             9999999999999999999999   8998    9999999


Q ss_pred             Ccccchhccc--cCCCc-------ccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          125 GNTLLHMTGI--KRSDY-------VPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       125 G~TpLh~A~~--~~~~~-------~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      |+||||+|+.  .++.+       ++      .+++..+...      .......+.+|.+|+||+|+|++.+.
T Consensus       172 g~TpLh~A~~~~~~~~~~~~~~~~iv------~~Ll~~ga~~------~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          172 GNTVLHALVMIADNSPENSALVIHMY------DGLLQMGARL------CPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHH------HHHHHHHHHH------STTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcccCCchhhHHHHHHH------HHHHHcCCCc------ccccccccccCCCCCCHHHHHHHhCC
Confidence            9999999998  55544       33      1122211110      00001127889999999999988654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.92  E-value=4.1e-25  Score=203.26  Aligned_cols=163  Identities=17%  Similarity=0.183  Sum_probs=119.0

Q ss_pred             HHHHHHHhCCCCCccc-----cccCCCCcHHHHHccCCCC----hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEIT-----DSFQDQSKPKIHRYGANPN----ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~-----d~~~~~~~~~lh~a~~~~~----~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      |++++|++.|++....     +.....+.+|+|.++..+.    ++.|+++|+|+|.+|.+|+||||+|+..|+.+++++
T Consensus        25 ~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~  104 (269)
T 4b93_B           25 EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPL  104 (269)
T ss_dssp             HHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            7899999999763211     1112356788998876654    457899999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhh
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~  152 (389)
                      |+ ..+++++.++.+|.||+|+|+..++.+++++|++.|++    +|.+|.+|+||||+|+..|+.+++      .++++
T Consensus       105 Ll-~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~----~n~~d~~g~TpL~~A~~~g~~~~v------~~Ll~  173 (269)
T 4b93_B          105 LL-KHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK----PNKKDLSGNTPLIYACSGGHHELV------ALLLQ  173 (269)
T ss_dssp             HH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCGGGH------HHHHH
T ss_pred             HH-hcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCCCHHHH------HHHHH
Confidence            99 78999999999999999999999999999999999998    999999999999999999998887      22221


Q ss_pred             HHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          153 EELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      .+             ..++.+|.+|.||+|+|+..+
T Consensus       174 ~g-------------advn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          174 HG-------------ASINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             TT-------------CCTTCBCTTSCBHHHHHHHTT
T ss_pred             CC-------------CCCCccccCCCcHHHHHHHcC
Confidence            11             125788999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=4.4e-25  Score=198.39  Aligned_cols=180  Identities=14%  Similarity=0.116  Sum_probs=102.6

Q ss_pred             HHHHHHHh----CCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHH
Q 016455            2 ELARFLIR----RDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~----~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      |++++|++    .|+++|..|.   .+.+|||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.++++.|+
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   99 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNN---LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL   99 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcccc---cCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            44555554    5666666664   3345566665555443   566666666666666666666666666666666666


Q ss_pred             HHCC---CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccchhccccCCCcccccC------
Q 016455           75 NVYP---QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKM------  144 (389)
Q Consensus        75 ~~~~---~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~l------  144 (389)
                      +...   .+++..|..|+||||+|+..|+.+++++|++.|++    ++.+| .+|+||||+|+..++.++++.+      
T Consensus       100 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC----cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3322   15566666666666666666666666666666665    56555 5666666666666655544222      


Q ss_pred             -------CChhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhhhh
Q 016455          145 -------EGPALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 -------~~~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                             +..++.........+.++.+.. ....+.+|.+|+||+|+|.+.+
T Consensus       176 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence                   1122222222222222222211 1124778899999999988754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.91  E-value=3.1e-25  Score=201.82  Aligned_cols=151  Identities=19%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             CCCChhhHhhcCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccC
Q 016455           33 ANPNASSVDQKGIGESS-ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME  111 (389)
Q Consensus        33 ~~~~~~~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g  111 (389)
                      ..+.++.|+++|++++. .|.+|+||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            34456689999999954 5899999999999999999999999 789999999999999999999999999999999998


Q ss_pred             C-cccccccccccCCcccchhccccCCCcccccC-------------CChhHHhhHHHHHHHHHHhhcch-hhhhhccCC
Q 016455          112 V-PMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------EGPALVLQEELLWYERVEEVSIP-HFRNHRNNM  176 (389)
Q Consensus       112 ~-~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~  176 (389)
                      . +    ++.+|.+|+||||+|+..++.++++.+             +..++.........+.++.+... ...+.+|.+
T Consensus       114 ~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          114 ATD----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             TSC----TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCC----ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            7 5    899999999999999999988877433             22334333333333333332221 224677888


Q ss_pred             CCChHHHHhhhh
Q 016455          177 GFTPEELFATAN  188 (389)
Q Consensus       177 g~Tpl~la~~~~  188 (389)
                      |+||+|+|++.+
T Consensus       190 g~tpL~~A~~~~  201 (253)
T 1yyh_A          190 EETPLFLAAREG  201 (253)
T ss_dssp             SCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCC
Confidence            999999887653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=7.3e-26  Score=214.15  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=132.7

Q ss_pred             HHHHHHHhCCCCCcc-ccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCc---HHHHHHHH
Q 016455            2 ELARFLIRRDTSWEI-TDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGC---IEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~-~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~---~~~v~~Ll   74 (389)
                      +++++|++.|+++|. .|.   .+.+|||+|+..+..+   +|+++|+++|.+|.+|+||||+|+..|+   .++++.|+
T Consensus       111 ~~~~~l~~~g~dvn~~~d~---~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll  187 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDE---HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  187 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCST---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHHHHhcCCCcccccCC---CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence            578899999999999 786   5668899998888765   8999999999999999999999999999   78888888


Q ss_pred             HHCCCCccccccCCChHHHHHHH----hCChHHHHHHHccCC--------------------ccc---------------
Q 016455           75 NVYPQAVEHIDDEGRNILHVAIK----YRQLEIFELVVQMEV--------------------PMR---------------  115 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~----~~~~~iv~~Ll~~g~--------------------~~~---------------  115 (389)
                      +...++++.+|..|+||||+|++    .|+.+++++|++.+.                    +.+               
T Consensus       188 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~  267 (327)
T 1sw6_A          188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  267 (327)
T ss_dssp             HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH
Confidence            66567899999999999999999    899999999997732                    200               


Q ss_pred             ------ccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          116 ------RLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       116 ------~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                            ..+|.+|.+|+||||+|++.|+.+++      .+++..+             ..++.+|.+|+||+|+|++.
T Consensus       268 ~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v------~~Ll~~G-------------ad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIV------DALLDYG-------------ADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHH------HHHHHTT-------------CCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHH------HHHHHcC-------------CCCcccCCCCCCHHHHHHhc
Confidence                  02778888888888888888887766      2221111             11578999999999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=8e-25  Score=196.44  Aligned_cols=169  Identities=19%  Similarity=0.199  Sum_probs=133.3

Q ss_pred             CCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCC
Q 016455           12 TSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEG   88 (389)
Q Consensus        12 a~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G   88 (389)
                      .+++..|.   .+.+++|.|+..|..+   .|+++|++++..|.+|.||||+|+..|+.+++++|+ +.|++++.+|..|
T Consensus         2 ~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g   77 (237)
T 3b7b_A            2 MNFKMEHQ---NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEG   77 (237)
T ss_dssp             CCCCCSSC---CSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTS
T ss_pred             CCcccccC---CCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCC
Confidence            35666665   5567888888887765   889999999999999999999999999999999999 7899999999999


Q ss_pred             ChHHHHHHHhCChHHHHHHHccC-CcccccccccccCCcccchhccccCCCcccccC-------------CChhHHhhHH
Q 016455           89 RNILHVAIKYRQLEIFELVVQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------EGPALVLQEE  154 (389)
Q Consensus        89 ~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------~~~~l~l~~~  154 (389)
                      +||||+|+..|+.+++++|++.| .+    ++.+|..|+||||+|+..++.++++.+             +...+.....
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  153 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMD----VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF  153 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCC----cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Confidence            99999999999999999999998 66    899999999999999999887776432             1223333322


Q ss_pred             HHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhh
Q 016455          155 LLWYERVEEVSIP-HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       155 ~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ....+.++.+... ..++.+|.+|+||+|+|.+.+
T Consensus       154 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  188 (237)
T 3b7b_A          154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN  188 (237)
T ss_dssp             HCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence            2222333332221 224677888999999888654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=2.9e-25  Score=204.17  Aligned_cols=160  Identities=20%  Similarity=0.202  Sum_probs=134.2

Q ss_pred             HHHHHHHhCCCC---CccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 016455            2 ELARFLIRRDTS---WEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         2 e~v~~Ll~~ga~---vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      +++++|+++|++   +|.+|.   .+.+|||.|+..+..+   .|+++|++++.+|..|+||||+|+..|+.+++++|+ 
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-   98 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQND---LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL-   98 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS-
T ss_pred             HHHHHHHhcCCCcccccccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhh-
Confidence            689999999998   556664   6668899888877655   899999999999999999999999999999999999 


Q ss_pred             HCCC-----------------------------------------------CccccccCCChHHHHHHHhCChHHHHHHH
Q 016455           76 VYPQ-----------------------------------------------AVEHIDDEGRNILHVAIKYRQLEIFELVV  108 (389)
Q Consensus        76 ~~~~-----------------------------------------------~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  108 (389)
                      ..+.                                               +++.+|..|+||||+|+..|+.+++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  178 (282)
T 1oy3_D           99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (282)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            4443                                               36778999999999999999999999999


Q ss_pred             ccCCcccccccccccC-CcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhh
Q 016455          109 QMEVPMRRLVRKIDNG-GNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       109 ~~g~~~~~~~~~~d~~-G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~  187 (389)
                      ++|++    ++.+|.. |+||||+|+..++.+++      .+++..+             ..++.+|.+|+||+|+|.+.
T Consensus       179 ~~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v------~~Ll~~g-------------ad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          179 DAGAD----LNKPEPTCGRTPLHLAVEAQAASVL------ELLLKAG-------------ADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHTCC----TTCCCTTTCCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTSCCHHHHHHTS
T ss_pred             HcCCC----CCCCCCCCCcCHHHHHHHcCCHHHH------HHHHHcC-------------CCCcccccCCCCHHHHHHHc
Confidence            99998    8988854 99999999999987776      2221111             11578899999999999875


Q ss_pred             h
Q 016455          188 N  188 (389)
Q Consensus       188 ~  188 (389)
                      +
T Consensus       236 ~  236 (282)
T 1oy3_D          236 P  236 (282)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=1.3e-24  Score=185.62  Aligned_cols=132  Identities=14%  Similarity=0.116  Sum_probs=121.8

Q ss_pred             HHHHHHHhCCCC-CccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTS-WEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~-vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|+++|.+ +|..|.   .+.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.+++++|+ +.
T Consensus        16 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   91 (172)
T 3v30_A           16 DQLKEHLRKGDNLVNKPDE---RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-ER   91 (172)
T ss_dssp             HHHHHHHTTCSGGGGCCCT---TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TT
T ss_pred             HHHHHHHHcCcccccCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHH-Hc
Confidence            688999999877 677775   5668899998888765   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        92 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~  151 (172)
T 3v30_A           92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALGYRKVQ  151 (172)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHhCcHHHH
Confidence            999999999999999999999999999999999998    999999999999999999988777

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=3.2e-25  Score=197.21  Aligned_cols=149  Identities=18%  Similarity=0.166  Sum_probs=101.2

Q ss_pred             CChhhHhhcCCCCCcC-CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCC-
Q 016455           35 PNASSVDQKGIGESSA-NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV-  112 (389)
Q Consensus        35 ~~~~~Ll~~ga~~n~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~-  112 (389)
                      +.++.|+++|++++.. |.+|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..|+.+++++|++.+. 
T Consensus         5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~   83 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT   83 (223)
T ss_dssp             CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred             HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4556778888888654 778888888888888888888888 6678888888888888888888888888888888776 


Q ss_pred             cccccccccccCCcccchhccccCCCcccccC-------------CChhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCC
Q 016455          113 PMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------EGPALVLQEELLWYERVEEVSI-PHFRNHRNNMGF  178 (389)
Q Consensus       113 ~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------~~~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~  178 (389)
                      +    ++.+|.+|+||||+|+..++.++++.+             +...+.........+.++.+.. ....+.+|.+|.
T Consensus        84 ~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           84 D----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             C----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             C----cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            4    777888888888888887776665322             1122332222222222222211 112456677777


Q ss_pred             ChHHHHhhhh
Q 016455          179 TPEELFATAN  188 (389)
Q Consensus       179 Tpl~la~~~~  188 (389)
                      ||+++|++.+
T Consensus       160 t~L~~A~~~~  169 (223)
T 2f8y_A          160 TPLFLAAREG  169 (223)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHcC
Confidence            8887776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=200.44  Aligned_cols=176  Identities=16%  Similarity=0.090  Sum_probs=136.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+..+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ +.+
T Consensus        73 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  148 (285)
T 3d9h_A           73 LSLRNLISQGWAVNIITA---DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-QHG  148 (285)
T ss_dssp             HHHHHHHHTTCCSCEECT---TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCcCC---CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHH-HCC
Confidence            689999999999999886   4557888888877655   889999999999999999999999999999999999 678


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC------------CC
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM------------EG  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l------------~~  146 (389)
                      .+++.. .+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+            +.
T Consensus       149 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~  223 (285)
T 3d9h_A          149 ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD  223 (285)
T ss_dssp             CCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC----TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTB
T ss_pred             CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Confidence            887754 4599999999999999999999999988    899999999999999999887776332            11


Q ss_pred             hhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHHHHhh
Q 016455          147 PALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       147 ~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~  186 (389)
                      .++.........+.++.+.. ...++.+|.+|+||+|+|.+
T Consensus       224 t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence            22332222222222222221 11246778888888888874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=1.2e-24  Score=185.58  Aligned_cols=132  Identities=23%  Similarity=0.287  Sum_probs=123.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|.   .+.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        28 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  103 (169)
T 2y1l_E           28 DEVRILMANGADVNAEDA---SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNG  103 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            789999999999999886   5567899898888765   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus       104 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E          104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999998    999999999999999999987766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=2.2e-24  Score=204.34  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        72 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  147 (351)
T 3utm_A           72 RIVQLLLQHGADVHAKDK---GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHG  147 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCccCC---CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            567777777777777765   3445666666666544   677777777777777777777777777777777776 444


Q ss_pred             CCccccc------------------------------------------------------cCCChHHHHHHHh---CCh
Q 016455           79 QAVEHID------------------------------------------------------DEGRNILHVAIKY---RQL  101 (389)
Q Consensus        79 ~~~~~~d------------------------------------------------------~~G~t~Lh~A~~~---~~~  101 (389)
                      ++++..|                                                      ..|+||||+|+..   ++.
T Consensus       148 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHH
Confidence            4443322                                                      2334445555544   224


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +++++|++.|++    +|.+|.+|+||||+|++.++.+++
T Consensus       228 ~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v  263 (351)
T 3utm_A          228 QVAELLLRKGAN----VNEKNKDFMTPLHVAAERAHNDVM  263 (351)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCC----cCCcCCCCCCHHHHHHHcCCHHHH
Confidence            455555555555    666677777777777766666555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=2.5e-24  Score=181.73  Aligned_cols=132  Identities=16%  Similarity=0.242  Sum_probs=121.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|.   .+.+++|.|+. +..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        19 ~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   93 (162)
T 1ihb_A           19 EQLTSLLQNNVNVNAQNG---FGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQ   93 (162)
T ss_dssp             HHHHHHTTSCCCTTCCCT---TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHhCCCCccccCc---cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            789999999999998886   55678999888 7655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++.+|.+|+||||+|++.|+.+++++|+++|++   .++.+|.+|+||||+|+..++.+++
T Consensus        94 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999986   2589999999999999999988776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=2.7e-24  Score=210.80  Aligned_cols=132  Identities=18%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+.   .+.+|+|.|+..+..+   .|+++|++++..|..|.||||+|+..|+.+++++|+ ..+
T Consensus       193 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~  268 (437)
T 1n11_A          193 DIVKLLLPRGGSPHSPAW---NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQ  268 (437)
T ss_dssp             HHHHHHGGGTCCSCCCCT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTT
T ss_pred             HHHHHHHhCCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-hcC
Confidence            455555555555555443   2334455555444433   455555555555555555555555555555555555 445


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++..|..|+||||+|++.|+.+++++|+++|++    ++.+|..|+||||+|+..++.+++
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v  327 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLV  327 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHH
Confidence            55555555555555555555555555555555554    555555555555555555554444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.7e-24  Score=181.38  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=120.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++ .+.   .+.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        16 ~~v~~Ll~~g~~~~-~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   90 (153)
T 1awc_B           16 DEVRILMANGAPFT-TDW---LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCC-CCT---TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTT
T ss_pred             HHHHHHHHcCCCCC-cCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-HcC
Confidence            68999999999876 343   5668899998887655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999998    999999999999999999987766

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=2.5e-24  Score=182.92  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=122.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|++.|+++|..|.   .+.+|+|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        17 ~~v~~ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   92 (167)
T 3v31_A           17 LYLATRIEQENVINHTDE---EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL-DCG   92 (167)
T ss_dssp             HHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HHT
T ss_pred             HHHHHHHHcCCCcCCCCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-HCC
Confidence            689999999999999886   5567889888887765   889999999999999999999999999999999999 678


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999999999999999999999998    999999999999999999988777

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=3.5e-24  Score=198.62  Aligned_cols=157  Identities=17%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|     +.+|||.|+..+..+   +|+++|++++.+|..|+||||+|+..|+.+++++|+ +.|
T Consensus        45 ~~v~~Ll~~g~~~~~~~-----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g  118 (285)
T 3kea_A           45 RLVCTLLNAGALKNLLE-----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKN  118 (285)
T ss_dssp             HHHHHHHHTTGGGSCCT-----TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHC
T ss_pred             HHHHHHHhCCCCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-hcC
Confidence            34445555554444432     233444444444332   444455555555555555555555555555555555 334


Q ss_pred             CCccccccCC-ChHHHHHHHhCChHHHHHHHccCCccccccccccc-CCcccchhccccCCCcccccCCChhHHhhHHHH
Q 016455           79 QAVEHIDDEG-RNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        79 ~~~~~~d~~G-~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~  156 (389)
                      ++++.+|..| +||||+|+..|+.+++++|+++|++    .  .|. +|+||||+|+..++.+++      .+++..   
T Consensus       119 a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~----~--~~~~~g~t~L~~A~~~g~~~~v------~~Ll~~---  183 (285)
T 3kea_A          119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----T--FDLAILLSCIHITIKNGHVDMM------ILLLDY---  183 (285)
T ss_dssp             GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT----T--CCCSTHHHHHHHHHHTTCHHHH------HHHHHH---
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc----c--ccccCCccHHHHHHHcChHHHH------HHHHHc---
Confidence            4455555444 4555555555555555555554433    1  111 445555555554444433      111111   


Q ss_pred             HHHHHHhhcchhhhhhccCCCCCh-HHHHhhhhh
Q 016455          157 WYERVEEVSIPHFRNHRNNMGFTP-EELFATANN  189 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~Tp-l~la~~~~~  189 (389)
                                ...++.+|.+|+|| +|+|.+.+.
T Consensus       184 ----------gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          184 ----------MTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             ----------HHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             ----------CCCCCcccCCCCChHHHHHHHcCC
Confidence                      11257889999998 999987543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=6.4e-24  Score=193.49  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=129.8

Q ss_pred             HHHHHHhCCCCCcccccc-CCCCcHHHHHcc---CCCC---hhhHhhcCCC-----------CCcCCCCCCcHHHHHHHc
Q 016455            3 LARFLIRRDTSWEITDSF-QDQSKPKIHRYG---ANPN---ASSVDQKGIG-----------ESSANDNAETPLFLATKS   64 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~-~~~~~~~lh~a~---~~~~---~~~Ll~~ga~-----------~n~~d~~G~tpLh~Aa~~   64 (389)
                      ++++|++.|++++..+.. +..+.+|||.|+   ..+.   ++.|+++|++           .+..|..|+||||+|+..
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  103 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER  103 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc
Confidence            566777799999987731 235678889776   4454   4588888754           445566899999999999


Q ss_pred             CcHHHHHHHHHHCCCCccccc--------------cCCChHHHHHHHhCChHHHHHHHc---cCCcccccccccccCCcc
Q 016455           65 GCIEIVKEIFNVYPQAVEHID--------------DEGRNILHVAIKYRQLEIFELVVQ---MEVPMRRLVRKIDNGGNT  127 (389)
Q Consensus        65 g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~~~~~iv~~Ll~---~g~~~~~~~~~~d~~G~T  127 (389)
                      |+.+++++|+ +.|++++.+|              ..|+||||+|+..|+.+++++|++   .|++    ++.+|.+|+|
T Consensus       104 g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~----~~~~d~~g~T  178 (260)
T 3jxi_A          104 RCKHYVELLV-EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----LRRQDSRGNT  178 (260)
T ss_dssp             TCHHHHHHHH-HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCCTTSCC
T ss_pred             CCHHHHHHHH-hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----CcccCCCCCc
Confidence            9999999999 7899999998              689999999999999999999999   8998    9999999999


Q ss_pred             cchhccccCCCccc--ccC-CChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          128 LLHMTGIKRSDYVP--EKM-EGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       128 pLh~A~~~~~~~~~--~~l-~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      |||+|+..++....  +.+ .-..+++..+.      .-.......+.+|.+|+||+|+|++.+.
T Consensus       179 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          179 VLHALVAIADNTRENTKFVTKMYDLLLIKCA------KLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHHhCc------ccccccchhhcccCCCCCHHHHHHHcCC
Confidence            99999987663211  000 00011111111      1000111226799999999999988653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=2.7e-24  Score=194.06  Aligned_cols=169  Identities=14%  Similarity=0.058  Sum_probs=123.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +.++.|+++|+++|...    .+.++||.|+..+..+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ ++|
T Consensus        19 ~~~~~ll~~g~~~~~~~----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g   93 (239)
T 1ycs_B           19 KTGSERIAHGMRVKFNP----LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFG   93 (239)
T ss_dssp             ----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHT
T ss_pred             HHHHHHhccCCCcccCc----hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            67899999999998653    6678999999888765   889999999999999999999999999999999999 679


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCc-ccchhc--cccCCCcccccCCChhHHhhHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGN-TLLHMT--GIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~-TpLh~A--~~~~~~~~~~~l~~~~l~l~~~~  155 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|. ||||+|  +..++.+++      .+++..+.
T Consensus        94 a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~~~t~l~~a~~~~~g~~~~~------~~Ll~~~a  163 (239)
T 1ycs_B           94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCS------QFLYGVQE  163 (239)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHH------HHHHHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cceecCCCCcchHHHHHHhhhccHHHH------HHHHHhhh
Confidence            99999999999999999999999999999999999    999998887 999999  777888877      23322222


Q ss_pred             HHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          156 LWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .    +............+..+++|.+++.+...
T Consensus       164 ~----~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          164 K----MGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             H----TTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             c----ccccccceEEEEeccCCCCCCcccccCCC
Confidence            1    11111111223457788999988766543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=7.1e-25  Score=197.02  Aligned_cols=161  Identities=20%  Similarity=0.236  Sum_probs=130.0

Q ss_pred             HHHHHHHhCCC----CCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHH
Q 016455            2 ELARFLIRRDT----SWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~ga----~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      ++++.|++.+.    ++|..|.   .+.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus        22 ~~v~~Ll~~~~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   98 (236)
T 1ikn_D           22 ALTMEVIRQVKGDLAFLNFQNN---LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT   98 (236)
T ss_dssp             SSSSCCCC-----CCCCCCCCT---TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHhhccHHHhhccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34556666554    7888876   5667899888887765   788999999999999999999999999999999999


Q ss_pred             HHCCCC------ccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc-CCcccchhccccCCCcccccCCCh
Q 016455           75 NVYPQA------VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGP  147 (389)
Q Consensus        75 ~~~~~~------~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A~~~~~~~~~~~l~~~  147 (389)
                       ..+.+      ++..|..|+||||+|+.+|+.+++++|+++|++    ++.+|. +|+||||+|+..++.+++      
T Consensus        99 -~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v------  167 (236)
T 1ikn_D           99 -QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLV------  167 (236)
T ss_dssp             -HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHH------
T ss_pred             -hcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHcCCHHHH------
Confidence             55443      678889999999999999999999999999998    999997 999999999999987776      


Q ss_pred             hHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          148 ALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       148 ~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .+++..             ...++.+|.+|+||+++|.+.+.
T Consensus       168 ~~Ll~~-------------ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          168 SLLLKC-------------GADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             HHHHTT-------------TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHHHHc-------------CCCCCcccCCCCCHHHHHHccCc
Confidence            121111             11157789999999999987543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=4.1e-24  Score=204.65  Aligned_cols=163  Identities=18%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCc-----------------------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESS-----------------------------   49 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~-----------------------------   49 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+..+   +|+++|++++.                             
T Consensus        34 ~~v~~Ll~~g~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  110 (364)
T 3ljn_A           34 DEVRRLIETGVSPTIQNR---FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER  110 (364)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence            688999999999988886   4456777777766544   78888876654                             


Q ss_pred             -----------------------CCCCCCcHHHHHHHcC--cHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHH
Q 016455           50 -----------------------ANDNAETPLFLATKSG--CIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        50 -----------------------~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv  104 (389)
                                             +|..|.||||+|+..|  +.+++++|+ +.|++++.+|..|+||||+|+.+|+.+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~g~~~~v  189 (364)
T 3ljn_A          111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILV-QLGASPTAKDKADETPLMRAMEFRNREAL  189 (364)
T ss_dssp             TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence                                   3444555555555555  555555555 33455555555555555555555555555


Q ss_pred             HHHHccCCc-ccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcc-hhhhhhccCCCCChHH
Q 016455          105 ELVVQMEVP-MRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSI-PHFRNHRNNMGFTPEE  182 (389)
Q Consensus       105 ~~Ll~~g~~-~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~-~~~~~~~n~~g~Tpl~  182 (389)
                      ++|+++|++ ....+|.+|.+|+||||+|+..++.+++                    +.+.. ...++.+|.+|+||++
T Consensus       190 ~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v--------------------~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA--------------------MRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             HHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH--------------------HHHHTTTCCTTCCCTTSCCHHH
T ss_pred             HHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH--------------------HHHHHcCCCCCCCCCCCCCHHH
Confidence            555554443 1112445555555555555555544443                    11111 1125788999999999


Q ss_pred             HHhhhh
Q 016455          183 LFATAN  188 (389)
Q Consensus       183 la~~~~  188 (389)
                      +|++.+
T Consensus       250 ~A~~~g  255 (364)
T 3ljn_A          250 LSVRAA  255 (364)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=6.7e-24  Score=184.61  Aligned_cols=132  Identities=20%  Similarity=0.139  Sum_probs=122.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..|.   .+.+|+|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        49 ~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  124 (192)
T 2rfm_A           49 NAIDKLVENFDKLEDKDI---EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHG  124 (192)
T ss_dssp             GGHHHHHHHHCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHhccccccccc---cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCC
Confidence            689999999999998886   4567889888887655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       125 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHhCcHHHH
Confidence            99999999999999999999999999999999998    999999999999999999987776

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.90  E-value=1e-23  Score=189.43  Aligned_cols=170  Identities=15%  Similarity=0.092  Sum_probs=128.9

Q ss_pred             ccccccCCCCcHHHHHccCCCChh---hHhh----cCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccC
Q 016455           15 EITDSFQDQSKPKIHRYGANPNAS---SVDQ----KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        15 n~~d~~~~~~~~~lh~a~~~~~~~---~Ll~----~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      +.+|.   .+.++||.|+..|..+   .|++    .|++++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..
T Consensus         3 ~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~   78 (241)
T 1k1a_A            3 TRADE---DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRH   78 (241)
T ss_dssp             ----C---TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT
T ss_pred             cccCC---CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCC
Confidence            34554   5567899999988866   5554    79999999999999999999999999999999 789999999999


Q ss_pred             CChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC--------------CChhHHhhH
Q 016455           88 GRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM--------------EGPALVLQE  153 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l--------------~~~~l~l~~  153 (389)
                      |+||||+|+..|+.+++++|++.+......++.+|.+|+||||+|+..++.++++.+              +...+....
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            999999999999999999999998732233899999999999999999887766322              122333332


Q ss_pred             HHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhh
Q 016455          154 ELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       154 ~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      .....+.++.+... ..++.+|.+|.||+|+|++.+
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            22222333322211 225677889999999887653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=9.2e-24  Score=179.40  Aligned_cols=141  Identities=15%  Similarity=0.158  Sum_probs=122.8

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCCh
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  101 (389)
                      .+++|.|+..|..+   .|++.|++++.+|..|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..|+.
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            46689998888766   788999999999999999999999999999999999 67999999999999999999999999


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChH
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPE  181 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl  181 (389)
                      +++++|+++|++    ++.+|.+|+||||+|+..++.+++      .+.++.             ....+.+|.+|+||+
T Consensus        83 ~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~-------------g~~~~~~~~~g~t~l  139 (167)
T 3v31_A           83 DIVKMLLDCGVD----VNEYDWNGGTPLLYAVHGNHVKCV------KMLLES-------------GADPTIETDSGYNSM  139 (167)
T ss_dssp             HHHHHHHHHTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHCCCC----CCcCCCCCCCHHHHHHHcCCHHHH------HHHHHc-------------CCCCCCcCCCCCCHH
Confidence            999999999998    999999999999999999887766      111111             111467899999999


Q ss_pred             HHHhhhhh
Q 016455          182 ELFATANN  189 (389)
Q Consensus       182 ~la~~~~~  189 (389)
                      ++|.+.+.
T Consensus       140 ~~A~~~~~  147 (167)
T 3v31_A          140 DLAVALGY  147 (167)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCc
Confidence            99987643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=5.4e-24  Score=191.22  Aligned_cols=160  Identities=18%  Similarity=0.215  Sum_probs=134.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCC------CCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIG------ESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~------~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|+++|..|.   .+.+|+|.|+..+..+   .|+++|++      ++..|..|.||||+|+..|+.+++++
T Consensus        59 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  135 (236)
T 1ikn_D           59 EIAEALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  135 (236)
T ss_dssp             HHHHCCCSCCCCSCCCCT---TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence            789999999999999986   5567788888777655   88999876      46778899999999999999999999


Q ss_pred             HHHHCCCCcccccc-CCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHh
Q 016455           73 IFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVL  151 (389)
Q Consensus        73 Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l  151 (389)
                      |+ +.|++++.+|. .|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++      +++
T Consensus       136 Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~------~Ll  204 (236)
T 1ikn_D          136 LV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQ------QLG  204 (236)
T ss_dssp             HH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHH------HHH
T ss_pred             HH-HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHH------HHH
Confidence            99 67899999998 999999999999999999999999999    9999999999999999999877761      111


Q ss_pred             hHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          152 QEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      .           .........+|.+|.||.+...+
T Consensus       205 ~-----------~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          205 Q-----------LTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             T-----------TSCGGGSSCCCCCTTTCCCCC--
T ss_pred             H-----------cchhhhhcCCccchHHHHhhhcc
Confidence            1           11122246788999999986654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=7.6e-24  Score=184.25  Aligned_cols=149  Identities=15%  Similarity=0.074  Sum_probs=126.1

Q ss_pred             CccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCCh
Q 016455           14 WEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN   90 (389)
Q Consensus        14 vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t   90 (389)
                      +|.+|.   .+.+|||.|+..+..   +.|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+++++.+|..|+|
T Consensus        28 ~n~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           28 RNYRDS---YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKT  103 (192)
T ss_dssp             HTCCCT---TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCC
T ss_pred             HhCcCC---CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCc
Confidence            345565   556778888776654   4899999999999999999999999999999999999 668999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhh
Q 016455           91 ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFR  170 (389)
Q Consensus        91 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~  170 (389)
                      |||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.             ...+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~-------------ga~~  160 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGAN----VNDRNLEGETPLIVASKYGRSEIV------KKLLEL-------------GADI  160 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC----SSCCCTTCCCHHHHHHHHTCHHHH------HHHHHT-------------TCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHH------HHHHHC-------------CCCC
Confidence            99999999999999999999998    999999999999999999987766      111111             1115


Q ss_pred             hhccCCCCChHHHHhhhhh
Q 016455          171 NHRNNMGFTPEELFATANN  189 (389)
Q Consensus       171 ~~~n~~g~Tpl~la~~~~~  189 (389)
                      +.+|.+|+||+++|...+.
T Consensus       161 ~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          161 SARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             TCBCTTSCBHHHHHHHTTC
T ss_pred             CCcCCCCCCHHHHHHHhCc
Confidence            7789999999999987653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=1.3e-23  Score=192.91  Aligned_cols=179  Identities=15%  Similarity=0.122  Sum_probs=130.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|++++..|.   .+.+|+|.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        53 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  128 (285)
T 1wdy_A           53 DIVELLLRHGADPVLRKK---NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRG  128 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH-HhC
Confidence            678888888888888776   4456777777666544   788888888888888888888888888888888888 667


Q ss_pred             CCcccc----------ccCCChHHHHHHHhCChHHHHHHHcc-CCcccccccccccCCcccchhccccCCC----ccccc
Q 016455           79 QAVEHI----------DDEGRNILHVAIKYRQLEIFELVVQM-EVPMRRLVRKIDNGGNTLLHMTGIKRSD----YVPEK  143 (389)
Q Consensus        79 ~~~~~~----------d~~G~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~d~~G~TpLh~A~~~~~~----~~~~~  143 (389)
                      .+++..          |..|.||||+|+..|+.+++++|++. |++    ++.+|..|+||||+|+..++.    ++++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~  204 (285)
T 1wdy_A          129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD----VNACDNMGRNALIHALLSSDDSDVEAITHL  204 (285)
T ss_dssp             CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC----TTCCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred             CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCCHHHHHHHccccchHHHHHHH
Confidence            777766          67788888888888888888888876 777    888888888888888877763    23211


Q ss_pred             C-------------CChhHHhhHHHHHHHHHHhhcc--hhhhhhccCCCCChHHHHhhhh
Q 016455          144 M-------------EGPALVLQEELLWYERVEEVSI--PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       144 l-------------~~~~l~l~~~~~~~~~v~~~~~--~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      +             +..++.........+.++.+..  ...++.+|.+|+||+|+|.+.+
T Consensus       205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            1             2233443333333333333322  2235778899999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=7.7e-24  Score=188.73  Aligned_cols=161  Identities=20%  Similarity=0.236  Sum_probs=134.5

Q ss_pred             HHHHHHHhCCCCCcc-ccccCCCCcHHHHHccCCCChh---hHhhcC--CCCCc-CCCCCCcHHHHHHHcCcHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEI-TDSFQDQSKPKIHRYGANPNAS---SVDQKG--IGESS-ANDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~-~d~~~~~~~~~lh~a~~~~~~~---~Ll~~g--a~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      ++++.|+++|.+++. .|.   .+.+|||.|+..+..+   .|+++|  .+++. .|..|.||||+|+..|+.+++++|+
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   92 (228)
T 2dzn_A           16 FKVQELLHSKPSLLLQKDQ---DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   92 (228)
T ss_dssp             HHHHHHHHHCGGGTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHhcCccccccCCC---CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            689999999987554 554   5668899998888765   889999  55555 7889999999999999999999999


Q ss_pred             HHCC--CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhh
Q 016455           75 NVYP--QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        75 ~~~~--~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~  152 (389)
                       +.+  .+++..|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++      +.++
T Consensus        93 -~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~------~Ll~  161 (228)
T 2dzn_A           93 -DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS----VRIKDKFNQIPLHRAASVGSLKLIE------LLCG  161 (228)
T ss_dssp             -SSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHH------HHHT
T ss_pred             -hCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHH------HHHh
Confidence             666  88999999999999999999999999999999998    9999999999999999999877661      1111


Q ss_pred             HHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          153 EELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      .+            +...+.+|.+|+||+|+|.+.+
T Consensus       162 ~g------------~~~~~~~d~~g~t~L~~A~~~~  185 (228)
T 2dzn_A          162 LG------------KSAVNWQDKQGWTPLFHALAEG  185 (228)
T ss_dssp             TT------------CCCSCCCCTTSCCHHHHHHHTT
T ss_pred             cC------------cccccCcCCCCCCHHHHHHHcC
Confidence            00            0125778999999999998754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=1.8e-23  Score=175.45  Aligned_cols=130  Identities=14%  Similarity=0.184  Sum_probs=118.5

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|+++ +.++|..|.   .+.+|+|. +..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.
T Consensus        16 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   90 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNR---FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EH   90 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCT---TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhhCcCccccCC---CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-Hc
Confidence            678999988 458888886   55678898 7777655   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|++. ++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCHHHHHHHcCcHHHH
Confidence            899999999999999999999999999999998 77    999999999999999999987776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.90  E-value=7.2e-24  Score=189.44  Aligned_cols=160  Identities=23%  Similarity=0.225  Sum_probs=135.3

Q ss_pred             HHHHHHHhCCCC-CccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTS-WEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~-vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |.++.|++.+.+ ++..|.   .+.++||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.
T Consensus        20 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   95 (231)
T 3aji_A           20 DELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VK   95 (231)
T ss_dssp             HHHHHHHHHCGGGGGCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhchhhhhcCCC---CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHH-Hc
Confidence            678888887643 555554   5667889888777655   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.+++      .+.+..    
T Consensus        96 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~----  161 (231)
T 3aji_A           96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKMV------HILLFY----  161 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH------HHHHHT----
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCcHHHHHHHcCCHHHH------HHHHhc----
Confidence            999999999999999999999999999999999998    999999999999999999987766      111110    


Q ss_pred             HHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          158 YERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                               ....+.+|.+|+||+|+|.+.+
T Consensus       162 ---------g~~~~~~~~~g~t~L~~A~~~~  183 (231)
T 3aji_A          162 ---------KASTNIQDTEGNTPLHLACDEE  183 (231)
T ss_dssp             ---------TCCSCCCCTTSCCHHHHHHHTT
T ss_pred             ---------CCCccccCCCCCCHHHHHHHCC
Confidence                     1125778999999999998754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=7.8e-24  Score=180.51  Aligned_cols=143  Identities=22%  Similarity=0.275  Sum_probs=124.7

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      ...+++|.|+..|..+   .|+++|+++|.+|.+|.||||+|+..|+.+++++|+ +.+.+++.+|..|+||||+|+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcC
Confidence            4567899998888766   889999999999999999999999999999999999 779999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCC
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~T  179 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.+             ...+.+|.+|+|
T Consensus        92 ~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~g-------------~~~~~~~~~g~t  148 (169)
T 2y1l_E           92 HLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIV------EVLLKNG-------------ADVNAQDKFGKT  148 (169)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTSCC
T ss_pred             CHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHH------HHHHHcC-------------CCCCCcCCCCCC
Confidence            99999999999998    999999999999999999987766      1111110             114678999999


Q ss_pred             hHHHHhhhhh
Q 016455          180 PEELFATANN  189 (389)
Q Consensus       180 pl~la~~~~~  189 (389)
                      |+++|.+.+.
T Consensus       149 ~l~~A~~~~~  158 (169)
T 2y1l_E          149 AFDISIDNGN  158 (169)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCC
Confidence            9999987653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=2.2e-23  Score=197.38  Aligned_cols=181  Identities=15%  Similarity=0.157  Sum_probs=132.5

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCC------------------------------
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGE------------------------------   47 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~------------------------------   47 (389)
                      +|+|++||++|+|+|.++.  +.+.||||.|+..|..+   +|+++|+++                              
T Consensus        38 ~~~V~~LL~~Gadvn~~~~--~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (337)
T 4g8k_A           38 VDLVQQLLEGGANVNFQEE--EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG  115 (337)
T ss_dssp             HHHHHHHHHHTCCTTCCCT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCCCCccCC--CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhcc
Confidence            3789999999999998875  34678899998888655   788887765                              


Q ss_pred             ---CcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccc----------cccCCChHHHHHHHhCChHHHHHHHc-cCCc
Q 016455           48 ---SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH----------IDDEGRNILHVAIKYRQLEIFELVVQ-MEVP  113 (389)
Q Consensus        48 ---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~----------~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~  113 (389)
                         +..|..|.||+|+|+..|+.++++.|+ ..|++++.          .+..|+||||+|+++|+.+++++|++ .|++
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll-~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHHHHHH-HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence               455678899999999999999999999 67777654          34568999999999999999999995 5887


Q ss_pred             ccccccccccCCcccchhccccCCCc----ccccC-------------CChhHHhhHHHHHHHHHHhhcc--hhhhhhcc
Q 016455          114 MRRLVRKIDNGGNTLLHMTGIKRSDY----VPEKM-------------EGPALVLQEELLWYERVEEVSI--PHFRNHRN  174 (389)
Q Consensus       114 ~~~~~~~~d~~G~TpLh~A~~~~~~~----~~~~l-------------~~~~l~l~~~~~~~~~v~~~~~--~~~~~~~n  174 (389)
                          +|.+|..|+||+|.++..+...    +++.+             +..++.........+.++.+..  ...++.+|
T Consensus       195 ----~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d  270 (337)
T 4g8k_A          195 ----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  270 (337)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred             ----cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence                8888888888888877544432    21111             1223333333333334443332  22367889


Q ss_pred             CCCCChHHHHhhhh
Q 016455          175 NMGFTPEELFATAN  188 (389)
Q Consensus       175 ~~g~Tpl~la~~~~  188 (389)
                      .+|+||+|+|++.+
T Consensus       271 ~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          271 SDGKTALLLAVELK  284 (337)
T ss_dssp             TTSCBHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcC
Confidence            99999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=2.1e-23  Score=179.46  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=119.8

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++ +.++|..|.   .+.+|||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.
T Consensus        19 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   94 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGDD---HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY   94 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHhcCcccccccCC---CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            678999988 678888886   5567899888887765   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        95 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cchhccCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998    999999999999999987665544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=1.9e-23  Score=175.01  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      +++|.|+..|..+   .|+++|++++ .|..|.||||+|+..|+.+++++|+ +.+.+++.+|..|+||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            5688888887765   8899999887 5889999999999999999999999 789999999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      ++++|+++|++    ++.+|.+|+||||+|+..++.+++      .+.++.+             ..++.+|.+|+||++
T Consensus        82 ~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~g-------------a~~~~~~~~g~t~l~  138 (153)
T 1awc_B           82 IVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVV------ELLIKYG-------------ADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTSCCHHH
T ss_pred             HHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHH------HHHHHcC-------------CCccccCCCCCCHHH
Confidence            99999999998    999999999999999999987766      1111110             115778999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|.+.+.
T Consensus       139 ~A~~~~~  145 (153)
T 1awc_B          139 ISIDNGN  145 (153)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.89  E-value=3.7e-24  Score=197.56  Aligned_cols=162  Identities=18%  Similarity=0.199  Sum_probs=134.4

Q ss_pred             HHHHHHHhCCCC--CccccccCCCCcHHHHHccCCCChh---hHhhcCC-CCCcCCCCCCcHHHHHH-----HcCcHHHH
Q 016455            2 ELARFLIRRDTS--WEITDSFQDQSKPKIHRYGANPNAS---SVDQKGI-GESSANDNAETPLFLAT-----KSGCIEIV   70 (389)
Q Consensus         2 e~v~~Ll~~ga~--vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga-~~n~~d~~G~tpLh~Aa-----~~g~~~~v   70 (389)
                      +.++.+++.+.+  +|..|.   .+.+|||+|+..+..+   .|+++|+ +++..|..|.||||+|+     ..++.+++
T Consensus        90 ~~~~~l~~~~~~~~~n~~d~---~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v  166 (276)
T 4hbd_A           90 VTFRAMSARLLDYVVNIADS---NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETV  166 (276)
T ss_dssp             HHHHHHCHHHHHHHHTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcCCCC---CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHH
Confidence            345666666555  777776   5567899998888765   8899998 99999999999999999     67899999


Q ss_pred             HHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHH
Q 016455           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALV  150 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~  150 (389)
                      +.|+ ..|.+.+..|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..|+.++++      ++
T Consensus       167 ~~Ll-~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----~n~~d~~G~TpLh~A~~~g~~~iv~------~L  235 (276)
T 4hbd_A          167 LQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQDDDGSTALMCACEHGHKEIAG------LL  235 (276)
T ss_dssp             HHHH-HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHH------HH
T ss_pred             HHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHCCCHHHHH------HH
Confidence            9999 66788889999999999999999999999999999999    9999999999999999999877762      11


Q ss_pred             hhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          151 LQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       151 l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +.            .....++.+|.+|+||+++|.+.+.
T Consensus       236 l~------------~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          236 LA------------VPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HT------------STTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             Hh------------cCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            11            0111257889999999999987643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=4.2e-23  Score=174.98  Aligned_cols=131  Identities=19%  Similarity=0.148  Sum_probs=116.7

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|++. +.+++..+.   .+.+++|.|+..+..+   .|+++|++++.+|.+|+||||+|+..|+.+++++|+ +.
T Consensus        22 ~~v~~ll~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   97 (165)
T 3twr_A           22 ETVKKLCTVQSVNCRDIEG---RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KH   97 (165)
T ss_dssp             HHHHHHCCTTTTTCCCTTT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCCcccccc---CCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHH-hC
Confidence            678999984 556655554   4567899998888765   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+. ++.+++
T Consensus        98 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A           98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCChhHhHhc-CChHHH
Confidence            999999999999999999999999999999999998    99999999999999877 665655

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=1.2e-23  Score=177.47  Aligned_cols=143  Identities=20%  Similarity=0.224  Sum_probs=122.8

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      ...+++|.|+..+..+   .|+++|++++.+|..|+||||+|+. |+.+++++|+ +.+.+++.+|..|+||||+|+.+|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4457899998888766   7899999999999999999999999 9999999999 779999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCC
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~T  179 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|++.++.+++      .+.++..            ....+.+|.+|+|
T Consensus        82 ~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~g------------~~~~~~~~~~g~t  139 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVV------EFLVKHT------------ASNVGHRNHKGDT  139 (162)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHHS------------CCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHH------HHHHHcc------------CCCCCCcCCCCCc
Confidence            99999999999998    999999999999999999987766      1111110            0113678999999


Q ss_pred             hHHHHhhhhh
Q 016455          180 PEELFATANN  189 (389)
Q Consensus       180 pl~la~~~~~  189 (389)
                      |+++|.+.+.
T Consensus       140 ~l~~A~~~~~  149 (162)
T 1ihb_A          140 ACDLARLYGR  149 (162)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999987643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=4.8e-23  Score=189.15  Aligned_cols=180  Identities=17%  Similarity=0.127  Sum_probs=141.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..+.  ..+.+|||.|+..+..+   +|+++|++++.+|.+|.||||+|+..|+.+++++|+ +.|
T Consensus        19 ~~v~~Ll~~g~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   95 (285)
T 1wdy_A           19 DLVQQLLEGGANVNFQEE--EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SKG   95 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCcccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            789999999999987732  35668899998888765   899999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccc----------ccCCcccchhccccCCCcccccCC---
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKI----------DNGGNTLLHMTGIKRSDYVPEKME---  145 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~----------d~~G~TpLh~A~~~~~~~~~~~l~---  145 (389)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+          |.+|.||||+|+..++.++++.+.   
T Consensus        96 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  171 (285)
T 1wdy_A           96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC----cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999988    6666          888999999999999887764321   


Q ss_pred             -----------ChhHHhhHHHHH----HHHHHhhcc-hhhhhhccCCCCChHHHHhhhh
Q 016455          146 -----------GPALVLQEELLW----YERVEEVSI-PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 -----------~~~l~l~~~~~~----~~~v~~~~~-~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                                 ...+........    .+.++.+.. ...++.+|.+|+||+|+|.+.+
T Consensus       172 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  230 (285)
T 1wdy_A          172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence                       112221111000    111111111 1124678899999999998754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.89  E-value=4.7e-23  Score=195.10  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=101.2

Q ss_pred             HHHHHHHh-CCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIR-RDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~-~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +.++.|++ .|.++|..|.   .+.+|||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.
T Consensus        38 ~~v~~ll~~~~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~  113 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDG---RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KH  113 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSST---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhcCCCcccCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH-HC
Confidence            45666665 4899988886   5567899998888765   899999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCC
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G  125 (389)
                      |++++..|..|+||||+|+.+|+.+++++|+++|++    ++..|..|
T Consensus       114 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g  157 (351)
T 3utm_A          114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD----PTLVNCHG  157 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CccccCCC
Confidence            999999999999999999999999999999999987    55544333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=5.4e-23  Score=201.57  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=130.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+.   .+.+|+|.|+..+..+   +|+++|++++..+.+|.||||+|+..|+.++++.|+ +.+
T Consensus       160 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  235 (437)
T 1n11_A          160 RVAELLLERDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYG  235 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCS---SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHhCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            678888888888888775   4556788887776654   788888888888888889999988888888888888 778


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccC-------------C
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM-------------E  145 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l-------------~  145 (389)
                      .+++..|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|++.++.++++.+             +
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  311 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG  311 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC
Confidence            88888888888999998888888888888888887    888888888999988888877665322             1


Q ss_pred             ChhHHhhHHHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhh
Q 016455          146 GPALVLQEELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 ~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ..++.........+.++.+... ..++.+|..|+||+|+|++.+
T Consensus       312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g  355 (437)
T 1n11_A          312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG  355 (437)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCC
Confidence            2233333222222222222111 124566777777777776543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.6e-23  Score=172.01  Aligned_cols=122  Identities=10%  Similarity=0.111  Sum_probs=112.0

Q ss_pred             CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccC
Q 016455           11 DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        11 ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      ++++|..|.   .+.++||.|+..+..+   .|+++|++++.+|..|+||||+|+. |+.+++++|+ +.+++++.+|..
T Consensus         2 ~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~   76 (136)
T 1d9s_A            2 SPGIHMLGG---SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL-LHGAEPNCADPA   76 (136)
T ss_dssp             CCCCSCCCC---CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHH-HHTCCSSCCBTT
T ss_pred             CCCccCCCC---CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCC
Confidence            567888886   5567899888888765   8899999999999999999999999 9999999999 678999999999


Q ss_pred             -CChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           88 -GRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 -G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                       |+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~~  127 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGAR----LDVCDAWGRLPVDLAEEQGHRDIA  127 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCC----CCCCSSSSSCHHHHHHHHTCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHH
Confidence             99999999999999999999999998    999999999999999999887766

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.88  E-value=2e-23  Score=176.99  Aligned_cols=144  Identities=21%  Similarity=0.226  Sum_probs=122.3

Q ss_pred             CCcHHHHHccCCCChh---hHhh-cCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQ-KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~-~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      .+.+++|.|+..+..+   .|++ .+.+++..|..|.||||+|+..|+.+++++|+ +.+.+++.+|.+|+||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHHc
Confidence            4567899998888776   5555 56778888999999999999999999999999 78999999999999999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF  178 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.             ....+.+|.+|+
T Consensus        86 ~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~-------------ga~~~~~~~~g~  142 (165)
T 3twr_A           86 GHYEVAELLVKHGAV----VNVADLWKFTPLHEAAAKGKYEIC------KLLLQH-------------GADPTKKNRDGN  142 (165)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSC
T ss_pred             CcHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHHcCCHHHH------HHHHHc-------------CCCCcccCCCCC
Confidence            999999999999998    999999999999999999987776      111111             111578899999


Q ss_pred             ChHHHHhhhhhh
Q 016455          179 TPEELFATANNE  190 (389)
Q Consensus       179 Tpl~la~~~~~~  190 (389)
                      ||+|+|.+.+.+
T Consensus       143 t~l~~a~~~~~~  154 (165)
T 3twr_A          143 TPLDLVKDGDTD  154 (165)
T ss_dssp             CTGGGSCTTCHH
T ss_pred             ChhHhHhcCChH
Confidence            999998775443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.88  E-value=1.5e-23  Score=201.88  Aligned_cols=178  Identities=14%  Similarity=0.094  Sum_probs=131.0

Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC-
Q 016455            3 LARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP-   78 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-   78 (389)
                      .++.|+++|+++|..|.   .+.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.+++++|+ ..+ 
T Consensus       148 ~~~~ll~~ga~vn~~d~---~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~  223 (373)
T 2fo1_E          148 EAKECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML-NSTK  223 (373)
T ss_dssp             HHHHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHT-TSHH
T ss_pred             HHHHHHhcCCCCcCCCC---CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH-hcCc
Confidence            45778889999888886   4457778777766554   888889999988889999999999999999999888 555 


Q ss_pred             --CCccccccCCChHHHHHHHhC---ChHHHHHHHccCCcccccccc--------cccCCcccchhccccCCCcccccC-
Q 016455           79 --QAVEHIDDEGRNILHVAIKYR---QLEIFELVVQMEVPMRRLVRK--------IDNGGNTLLHMTGIKRSDYVPEKM-  144 (389)
Q Consensus        79 --~~~~~~d~~G~t~Lh~A~~~~---~~~iv~~Ll~~g~~~~~~~~~--------~d~~G~TpLh~A~~~~~~~~~~~l-  144 (389)
                        .+++..|..|+||||+|+..+   +.+++++|+++|++    ++.        +|.+|+||||+|+..++.++++.+ 
T Consensus       224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~----~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  299 (373)
T 2fo1_E          224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK----VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  299 (373)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC----SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC----cccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence              678888888999999988887   78888888888877    443        677888899988888877766332 


Q ss_pred             -------------CChhHHhhHHHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhh
Q 016455          145 -------------EGPALVLQEELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 -------------~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~  188 (389)
                                   +..++.........+.++.+... ..++.+|.+|+||+++|.+.+
T Consensus       300 ~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          300 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcC
Confidence                         12334433333333333332221 124678899999999988754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=180.72  Aligned_cols=179  Identities=18%  Similarity=0.166  Sum_probs=140.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCC-CCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAND-NAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|++++..+.   .+.+++|.|+..+..+   .|+++|++++..+. .|.||||+|+..|+.++++.|+ +.
T Consensus        23 ~~~~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~   98 (240)
T 3eu9_A           23 ERCRELVEAGYDVRQPDK---ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KY   98 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCcCCCCC---CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-Hc
Confidence            789999999999998886   4567888888877655   88999999976654 5999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCC-CcccccC------------
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS-DYVPEKM------------  144 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~-~~~~~~l------------  144 (389)
                      +++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++ .++.+.+            
T Consensus        99 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~  174 (240)
T 3eu9_A           99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD----VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK  174 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC----ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc
Confidence            999999999999999999999999999999999998    99999999999999997665 3443211            


Q ss_pred             --CChhHHhhHHHHHHHHHHhhcch-hhhhhccCCCCChHHHHhhhh
Q 016455          145 --EGPALVLQEELLWYERVEEVSIP-HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 --~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~n~~g~Tpl~la~~~~  188 (389)
                        +..++.........+.++.+... ..++.+|.+|+||+++|.+.+
T Consensus       175 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          175 YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence              12334333333223333322221 124677888888888887764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=3.4e-23  Score=170.15  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=107.9

Q ss_pred             CCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccC
Q 016455           11 DTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        11 ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      |+|+ .+|.   .+.++||.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+++++.+|..
T Consensus         1 G~d~-~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~   75 (137)
T 3c5r_A            1 GIDP-FTNH---RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGYQ   75 (137)
T ss_dssp             ---C-CCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCGG
T ss_pred             CCCC-CcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccCcCCC
Confidence            6676 4554   5667899888877655   889999999999999999999999999999999999 789999999999


Q ss_pred             CChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           88 GRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..+..+++
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLSYGAS----RNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhccHHHHH
Confidence            99999999999999999999999998    999999999999999987766555

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=3e-23  Score=177.07  Aligned_cols=140  Identities=20%  Similarity=0.205  Sum_probs=121.0

Q ss_pred             HHHHHccCCCChh---hHhhcCCC-CCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCCh
Q 016455           26 PKIHRYGANPNAS---SVDQKGIG-ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~-~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  101 (389)
                      +++|.|+..|..+   .|++.|.+ ++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCH
Confidence            5688888888766   77888877 7899999999999999999999999999 67899999999999999999999999


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChH
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPE  181 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl  181 (389)
                      +++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.             ...++.+|.+|+||+
T Consensus        83 ~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v------~~Ll~~-------------ga~~~~~~~~g~t~l  139 (172)
T 3v30_A           83 DIVGLLLERDVD----INIYDWNGGTPLLYAVRGNHVKCV------EALLAR-------------GADLTTEADSGYTPM  139 (172)
T ss_dssp             HHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHH------HHHHHc-------------CCCccccCCCCCCHH
Confidence            999999999998    999999999999999999987776      111111             011577899999999


Q ss_pred             HHHhhhhh
Q 016455          182 ELFATANN  189 (389)
Q Consensus       182 ~la~~~~~  189 (389)
                      ++|.+.+.
T Consensus       140 ~~A~~~~~  147 (172)
T 3v30_A          140 DLAVALGY  147 (172)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCc
Confidence            99987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=6.6e-23  Score=179.15  Aligned_cols=133  Identities=21%  Similarity=0.234  Sum_probs=121.4

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHh-hcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVD-QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|..|.   .+.+|+|.|+..+..+   .|+ +.+++++..|..|.||||+|+..|+.+++++|++..
T Consensus        53 ~~v~~Ll~~g~~~~~~~~---~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A           53 EIAKALIDRGADINLQNS---ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            789999999999999886   5557889888888765   666 678899999999999999999999999999999666


Q ss_pred             CCCccccccCCChHHHHHHHhCC-----hHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQ-----LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~-----~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++.+|..|+||||+|+..++     .+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus       130 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~  194 (201)
T 3hra_A          130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQKGYTEIS  194 (201)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHcCCHhHH
Confidence            69999999999999999999998     9999999999999    999999999999999999988776

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=3.3e-23  Score=188.44  Aligned_cols=137  Identities=17%  Similarity=0.150  Sum_probs=120.9

Q ss_pred             CHHHHHHHhCCCCCcccc--------ccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCC-------------CCc
Q 016455            1 MELARFLIRRDTSWEITD--------SFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDN-------------AET   56 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d--------~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~-------------G~t   56 (389)
                      .|++++|+++|++++..+        .....+.+|||.|+..+..+   +|+++|++++.+|..             |.|
T Consensus        59 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             CTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             HHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence            378999999998877433        11135678899999888765   899999999999886             999


Q ss_pred             HHHHHHHcCcHHHHHHHHHH--CCCCccccccCCChHHHHHHH--hCChH-------HHHHHHccCCcccccc-------
Q 016455           57 PLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIK--YRQLE-------IFELVVQMEVPMRRLV-------  118 (389)
Q Consensus        57 pLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~g~~~~~~~-------  118 (389)
                      |||+|+..|+.+++++|++.  .|++++.+|.+|+||||+|+.  .++.+       ++++|+++|++    +       
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~----~~~~~~~~  214 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR----LCPTVQLE  214 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HSTTCCGG
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC----cccccccc
Confidence            99999999999999999943  899999999999999999999  78888       99999999988    7       


Q ss_pred             cccccCCcccchhccccCCCccc
Q 016455          119 RKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 ~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+|.+|+||||+|++.|+.+++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          215 EISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccCCCCCCHHHHHHHhCCHHHH
Confidence            89999999999999999998887

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=4.1e-23  Score=177.63  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=119.7

Q ss_pred             CcHHHHHccCCCChh---hHhhc-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           24 SKPKIHRYGANPNAS---SVDQK-GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      ..+++|.|+..+..+   .|+++ +.+++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcC
Confidence            345688888888766   66666 7889999999999999999999999999999 779999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCC
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~T  179 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++.             ...++.+|.+|+|
T Consensus        84 ~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v------~~Ll~~-------------ga~~~~~~~~g~t  140 (179)
T 3f6q_A           84 HRDIVQKLLQYKAD----INAVNEHGNVPLHYACFWGQDQVA------EDLVAN-------------GALVSICNKYGEM  140 (179)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHT-------------TCCSSBCCTTSCC
T ss_pred             CHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHH------HHHHHC-------------CCCcchhccCCCC
Confidence            99999999999998    999999999999999999987766      111111             1115788999999


Q ss_pred             hHHHHhhhh
Q 016455          180 PEELFATAN  188 (389)
Q Consensus       180 pl~la~~~~  188 (389)
                      |+++|.+..
T Consensus       141 pl~~A~~~~  149 (179)
T 3f6q_A          141 PVDKAKAPL  149 (179)
T ss_dssp             GGGGSCHHH
T ss_pred             cHHHHHHHH
Confidence            999997654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.88  E-value=1.4e-22  Score=186.10  Aligned_cols=177  Identities=17%  Similarity=0.137  Sum_probs=126.0

Q ss_pred             HHHHHHH----hCCCCCcccc-ccCCCCcHHHHHccCC---CC---hhhHhhcCCCC-------C----cCCCCCCcHHH
Q 016455            2 ELARFLI----RRDTSWEITD-SFQDQSKPKIHRYGAN---PN---ASSVDQKGIGE-------S----SANDNAETPLF   59 (389)
Q Consensus         2 e~v~~Ll----~~ga~vn~~d-~~~~~~~~~lh~a~~~---~~---~~~Ll~~ga~~-------n----~~d~~G~tpLh   59 (389)
                      ++++.|+    +.|++++..+ .....+.+|||.|+..   +.   +++|+++|+++       |    ..|..|.||||
T Consensus        27 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~  106 (273)
T 2pnn_A           27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH  106 (273)
T ss_dssp             STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHH
T ss_pred             HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHH
Confidence            3444455    4777766321 1123667889988743   54   45889988753       2    25678999999


Q ss_pred             HHHHcCcHHHHHHHHHHCCCCcccccc--------------CCChHHHHHHHhCChHHHHHHHc---cCCcccccccccc
Q 016455           60 LATKSGCIEIVKEIFNVYPQAVEHIDD--------------EGRNILHVAIKYRQLEIFELVVQ---MEVPMRRLVRKID  122 (389)
Q Consensus        60 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~G~t~Lh~A~~~~~~~iv~~Ll~---~g~~~~~~~~~~d  122 (389)
                      +|+..|+.+++++|+ +.|++++.+|.              .|+||||+|+..|+.+++++|++   .|++    ++.+|
T Consensus       107 ~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad----~~~~d  181 (273)
T 2pnn_A          107 IAIERRNMTLVTLLV-ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD----ISARD  181 (273)
T ss_dssp             HHHHTTCHHHHHHHH-HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCC
T ss_pred             HHHHcCCHHHHHHHH-HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC----ceeeC
Confidence            999999999999999 77999999987              79999999999999999999999   8998    99999


Q ss_pred             cCCcccchhccccCCCcccc--cC-CChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          123 NGGNTLLHMTGIKRSDYVPE--KM-EGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       123 ~~G~TpLh~A~~~~~~~~~~--~l-~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .+|+||||+|+..++.....  .+ .-..+++..+..    +.  ......+.+|.+|+||+|+|++.+.
T Consensus       182 ~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~----~n--~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK----LH--PTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HC--TTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh----cc--cccccccccCCCCCCHHHHHHHhCh
Confidence            99999999999987632210  00 000111111110    00  0001124689999999999987653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.88  E-value=6.8e-23  Score=197.20  Aligned_cols=179  Identities=15%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             HHHHHHhCCCCCcc-ccccCCCCcHHHHHccCCCChh--------hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHH
Q 016455            3 LARFLIRRDTSWEI-TDSFQDQSKPKIHRYGANPNAS--------SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI   73 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~-~d~~~~~~~~~lh~a~~~~~~~--------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~L   73 (389)
                      ++++|++.+.+... .+.  .++++.+...+..+.++        .|+++|+++|.+|.+|.||||+|+..|+.+++++|
T Consensus       108 ~~~~L~~~~~n~~d~~~g--~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~L  185 (373)
T 2fo1_E          108 ITEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL  185 (373)
T ss_dssp             CCSCCSTTTTTTCCCSSC--CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhccccccccCCcCC--CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHH
Confidence            44556666665544 332  47888777777776655        45799999999999999999999999999999999


Q ss_pred             HHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccC---CcccccccccccCCcccchhccccC---CCcccccC---
Q 016455           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQME---VPMRRLVRKIDNGGNTLLHMTGIKR---SDYVPEKM---  144 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g---~~~~~~~~~~d~~G~TpLh~A~~~~---~~~~~~~l---  144 (389)
                      + +.|++++.+|..|+||||+|+..|+.+++++|++.+   ++    ++.+|.+|+||||+|+..+   +.++++.+   
T Consensus       186 l-~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~  260 (373)
T 2fo1_E          186 M-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD----IEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  260 (373)
T ss_dssp             H-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT----TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             H-HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC----hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence            9 789999999999999999999999999999999987   56    8999999999999999877   44433221   


Q ss_pred             ------------------CChhHHhhHHHHHHHHHHhhcch--hhhhhccCCCCChHHHHhhhh
Q 016455          145 ------------------EGPALVLQEELLWYERVEEVSIP--HFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 ------------------~~~~l~l~~~~~~~~~v~~~~~~--~~~~~~n~~g~Tpl~la~~~~  188 (389)
                                        +..++.........+.++.+...  ..++.+|.+|+||+|+|++.+
T Consensus       261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence                              12334433322223333333321  235788999999999998754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.87  E-value=3.7e-22  Score=185.37  Aligned_cols=135  Identities=19%  Similarity=0.173  Sum_probs=114.7

Q ss_pred             HHHHHHHhCCCCCcccccc------CCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSF------QDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~------~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      |.++.++..+.+++.....      ...+.+++|.|+..|..+   .|+++|+++|..|.+|.||||+|+..|+.+++++
T Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~   91 (299)
T 1s70_B           12 EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF   91 (299)
T ss_dssp             HHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3455566665554432211      123457899998888766   8899999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+ +.|++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|.||||+|+..++.+++
T Consensus        92 Ll-~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B           92 LV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             HH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             HH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHhcchHHHH
Confidence            99 78999999999999999999999999999999999998    999999999999999988776655

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=1.8e-22  Score=186.26  Aligned_cols=132  Identities=18%  Similarity=0.216  Sum_probs=120.2

Q ss_pred             HHHHHHHhCCC-CCccccccCCCCcHHHHHccC-----CCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDT-SWEITDSFQDQSKPKIHRYGA-----NPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga-~vn~~d~~~~~~~~~lh~a~~-----~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|+ ++|..|.   .+.+|+|.|+.     .+.   ++.|++.|++++..|..|+||||+|+..|+.+++++
T Consensus       125 ~~v~~Ll~~g~~~~~~~~~---~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~  201 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQNR---AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA  201 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCCT---TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCCC---CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            78999999998 9998886   55677888873     333   338899999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCccc
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+ +.|++++.+|.+|+||||+|+..|+.+++++|++ .|++    ++.+|.+|+||||+|++.|+.+++
T Consensus       202 Ll-~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          202 LL-ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             HH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHHcCCHHHH
Confidence            99 7899999999999999999999999999999999 8998    999999999999999999998877

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=2.3e-23  Score=186.93  Aligned_cols=137  Identities=13%  Similarity=0.088  Sum_probs=121.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+..+..+   +|+++|+++|.+|..|+||||+|+..|+.+++++|+ +.|
T Consensus        35 ~~v~~Ll~~g~~~~~~d~---~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g  110 (229)
T 2vge_A           35 EVVQQAVKEMNDPSQPNE---EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHG  110 (229)
T ss_dssp             HHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTT
T ss_pred             HHHHHHHhcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            789999999999999886   5567899998887765   899999999999999999999999999999999999 789


Q ss_pred             CCccccc-cCCChHHHHH--HHhCChHHHHHHHccCCccc----------------------------ccccccccCCcc
Q 016455           79 QAVEHID-DEGRNILHVA--IKYRQLEIFELVVQMEVPMR----------------------------RLVRKIDNGGNT  127 (389)
Q Consensus        79 ~~~~~~d-~~G~t~Lh~A--~~~~~~~iv~~Ll~~g~~~~----------------------------~~~~~~d~~G~T  127 (389)
                      ++++.+| .+|+||||+|  +..|+.+++++|++.|++.+                            ..++.+|.+|+|
T Consensus       111 a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~T  190 (229)
T 2vge_A          111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEET  190 (229)
T ss_dssp             CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCS
T ss_pred             CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCccc
Confidence            9999987 6999999999  99999999999999875521                            125677889999


Q ss_pred             cchhccccCCCcccc
Q 016455          128 LLHMTGIKRSDYVPE  142 (389)
Q Consensus       128 pLh~A~~~~~~~~~~  142 (389)
                      |||+|++.|+.++++
T Consensus       191 pL~~A~~~g~~~~v~  205 (229)
T 2vge_A          191 DWWWAALHGQEGYVP  205 (229)
T ss_dssp             SEEEEEETTEEEEEE
T ss_pred             HHHHHHHcCCcceee
Confidence            999999999988883

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=8.4e-23  Score=171.35  Aligned_cols=139  Identities=18%  Similarity=0.195  Sum_probs=119.9

Q ss_pred             cHHHHHccCCCChh---hHhhc-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           25 KPKIHRYGANPNAS---SVDQK-GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      .+++|.|+..|..+   .|+++ +.+++..|..|.||||+ +..|+.++++.|+ +.|++++.+|..|+||||+|+.+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            36789998888766   66666 55899999999999999 9999999999999 7799999999999999999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCCh
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tp  180 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.++++      +.++.              ...+.+|.+|+||
T Consensus        81 ~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~------~Ll~~--------------~~~~~~~~~g~t~  136 (156)
T 1bd8_A           81 LDTLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVS------FLAAE--------------SDLHRRDARGLTP  136 (156)
T ss_dssp             HHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHH------HHHTT--------------SCTTCCCTTSCCH
T ss_pred             HHHHHHHHHcCCC----CCCcCCCCCcHHHHHHHhChHHHHH------HHHhc--------------cCCCCcCCCCCCH
Confidence            9999999999998    9999999999999999999877661      11110              1257789999999


Q ss_pred             HHHHhhhhh
Q 016455          181 EELFATANN  189 (389)
Q Consensus       181 l~la~~~~~  189 (389)
                      +++|.+.+.
T Consensus       137 l~~A~~~~~  145 (156)
T 1bd8_A          137 LELALQRGA  145 (156)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHcCc
Confidence            999987643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.87  E-value=7.9e-23  Score=189.47  Aligned_cols=154  Identities=16%  Similarity=0.116  Sum_probs=127.8

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++.++|.+.  ++|.+|.   .+.+|||.|+..+..+   .|+++|++++..|  |+||||+|+..|+.+++++|+ +.|
T Consensus        14 ~v~~lL~~~--~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll-~~g   85 (285)
T 3kea_A           14 QLKSFLSSK--DTFKADV---HGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSG   85 (285)
T ss_dssp             HHHHHHHST--TTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHH-HTT
T ss_pred             HHHHHHHhC--CCCccCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            456666655  5778886   5567899998888765   8899999999884  999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCC-cccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGG-NTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G-~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+| .||||+|+..++.++++      +.+..    
T Consensus        86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~~~~g~~t~L~~A~~~~~~~~v~------~Ll~~----  151 (285)
T 3kea_A           86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR----LMFYGKTGWKTSFYHAVMLNDVSIVS------YFLSE----  151 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG----GGGCSSSGGGSHHHHHHHTTCHHHHH------HHHTT----
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----CCccCCCCCCCHHHHHHHcCCHHHHH------HHHhC----
Confidence            99999999999999999999999999999999998    99999999 89999999999877661      11110    


Q ss_pred             HHHHHhhcchhhhhhccC-CCCChHHHHhhhh
Q 016455          158 YERVEEVSIPHFRNHRNN-MGFTPEELFATAN  188 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~-~g~Tpl~la~~~~  188 (389)
                             .    .+..+. +|.||+|+|+..+
T Consensus       152 -------g----~~~~~~~~g~t~L~~A~~~g  172 (285)
T 3kea_A          152 -------I----PSTFDLAILLSCIHITIKNG  172 (285)
T ss_dssp             -------S----CTTCCCSTHHHHHHHHHHTT
T ss_pred             -------C----CccccccCCccHHHHHHHcC
Confidence                   0    122333 8999999998754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=2.8e-22  Score=179.32  Aligned_cols=136  Identities=20%  Similarity=0.209  Sum_probs=118.7

Q ss_pred             HHHHHHHhCCCCC-----ccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCC-------------CCCcHHHH
Q 016455            2 ELARFLIRRDTSW-----EITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAND-------------NAETPLFL   60 (389)
Q Consensus         2 e~v~~Ll~~ga~v-----n~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~-------------~G~tpLh~   60 (389)
                      |++++|+++|+++     +..|   ..+.+|||.|+..+..+   +|+++|++++.++.             .|.||||+
T Consensus        51 ~~v~~Ll~~~~~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  127 (232)
T 2rfa_A           51 EAAMVLMEAAPELVFEPMTSEL---YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF  127 (232)
T ss_dssp             HHHHHHHHHCGGGGGCCCCSTT---TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH
T ss_pred             HHHHHHHHcCchhccccccccC---CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH
Confidence            7899999999987     3344   35678899998888765   89999999988765             79999999


Q ss_pred             HHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHH----HHHHccCCccc--ccccccccCCcccchhccc
Q 016455           61 ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF----ELVVQMEVPMR--RLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        61 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv----~~Ll~~g~~~~--~~~~~~d~~G~TpLh~A~~  134 (389)
                      |+..|+.+++++|+ +.|++++.+|.+|+||||+|+..|+.+++    ++|++.|++..  .+.+.+|.+|+||||+|++
T Consensus       128 A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~  206 (232)
T 2rfa_A          128 AACVGSEEIVRLLI-EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV  206 (232)
T ss_dssp             HHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH
Confidence            99999999999999 78999999999999999999999999988    99999998721  1126899999999999999


Q ss_pred             cCCCccc
Q 016455          135 KRSDYVP  141 (389)
Q Consensus       135 ~~~~~~~  141 (389)
                      .|+.+++
T Consensus       207 ~g~~~~v  213 (232)
T 2rfa_A          207 EGNIVMF  213 (232)
T ss_dssp             HTCHHHH
T ss_pred             cCCHHHH
Confidence            9998887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.87  E-value=1.8e-22  Score=183.93  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=118.1

Q ss_pred             CHHHHHHHhCCCCCcc---------ccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCC--------------CCC
Q 016455            1 MELARFLIRRDTSWEI---------TDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAN--------------DNA   54 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~---------~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d--------------~~G   54 (389)
                      .|++++|++.|++++.         .+. +..+.+|||.|+..+..+   +|+++|++++.+|              ..|
T Consensus        62 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           62 NDTIPILLDIAEKTGNMREFINSPFRDV-YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             CTHHHHHHHHHHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred             HHHHHHHHHhcccccchHhhhccccccc-ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence            3789999999865322         111 125678899999888765   8999999999998              689


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHH--CCCCccccccCCChHHHHHHHhCC---------hHHHHHHHccCCcccccc-----
Q 016455           55 ETPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIKYRQ---------LEIFELVVQMEVPMRRLV-----  118 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~~~-----  118 (389)
                      .||||+|+..|+.+++++|++.  .|++++.+|.+|+||||+|++.++         .+++++|+++|++    +     
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~  216 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK----LFPDTN  216 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH----HCTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc----cccccc
Confidence            9999999999999999999932  899999999999999999999888         7999999999988    6     


Q ss_pred             --cccccCCcccchhccccCCCccc
Q 016455          119 --RKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 --~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                        +.+|.+|+||||+|++.|+.+++
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHH
Confidence              78999999999999999998887

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=3.4e-23  Score=174.18  Aligned_cols=135  Identities=11%  Similarity=0.084  Sum_probs=101.3

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCCh-HHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN-ILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t-~Lh~A~~~   98 (389)
                      .+.++||.|+..+..+   .|+++|+++|.+|..|+||||+|+ .|+.+++++|+ +.|++++.+|..|+| |||+|+..
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll-~~g~~~~~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAARE   88 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHHC
Confidence            5567788888877665   788899999999999999999985 89999999999 778999999999998 99999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF  178 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+      ++.+             ...+.+|..|.
T Consensus        89 ~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~v~~L------l~~g-------------a~~~~~~~~g~  145 (156)
T 1bi7_B           89 GFLDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVARYL------RAAA-------------GGTRGSNHARI  145 (156)
T ss_dssp             TCHHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHH------SSCC------------------------
T ss_pred             CCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHhCHHHHHHHH------HHcC-------------CCCCccCcCcC
Confidence            999999999999988    899999999999999998887766221      1111             11466778888


Q ss_pred             ChHH
Q 016455          179 TPEE  182 (389)
Q Consensus       179 Tpl~  182 (389)
                      ||.+
T Consensus       146 t~~~  149 (156)
T 1bi7_B          146 DAAE  149 (156)
T ss_dssp             ----
T ss_pred             cccc
Confidence            8876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.7e-22  Score=165.88  Aligned_cols=115  Identities=23%  Similarity=0.278  Sum_probs=107.7

Q ss_pred             CCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.+++|.|+..+..+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHc
Confidence            35678899999888766   789999999999999999999999999999999999 77999999999999999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 ~~~~~v~~Ll~~g~~----~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           91 GHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHcCCC----CcCcCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999998    999999999999999999987766

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=3.3e-22  Score=161.15  Aligned_cols=109  Identities=15%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      .+.+++|.|+..+..+   .|+++|++++.+|..|+||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcC
Confidence            5568899999888766   789999999999999999999999999999999999 789999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccC
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|...+
T Consensus        85 ~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           85 HVSCVKLLLSKGAD----KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCCHH
T ss_pred             CHHHHHHHHHcCCC----CCCcCCCCCCHHHHhCCHH
Confidence            99999999999998    9999999999999996543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.2e-22  Score=165.29  Aligned_cols=120  Identities=24%  Similarity=0.260  Sum_probs=102.6

Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc
Q 016455           44 GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN  123 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~  123 (389)
                      |+|+ .+|.+|+||||+|+..|+.+++++|+ +.+.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~   74 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----VNTTGY   74 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc----ccCcCC
Confidence            6788 78999999999999999999999999 78999999999999999999999999999999999998    999999


Q ss_pred             CCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          124 GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       124 ~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      +|+||||+|+..++.+++      .+++..             ....+.+|.+|+||+|+|.+..
T Consensus        75 ~g~t~L~~A~~~~~~~~v------~~Ll~~-------------ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHVDIV------KLLLSY-------------GASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             GGCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSCCGGGGCCCHH
T ss_pred             CCCCHHHHHHHcCCHHHH------HHHHHc-------------CCCCCCCCCCCCCHHHHHhhcc
Confidence            999999999999987766      111111             1115788999999999998654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=8e-22  Score=165.78  Aligned_cols=122  Identities=14%  Similarity=0.093  Sum_probs=96.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCc-HHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAET-PLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~t-pLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|..|.   .+.+|||.|+ .+..+   +|+++|++++.+|..|.| |||+|+..|+.+++++|+ ++
T Consensus        26 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll-~~  100 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPNS---YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA  100 (156)
T ss_dssp             HHHHHHHTTTCCTTCCCS---SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HH
T ss_pred             HHHHHHHHcCCCCCCCCC---CCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH-Hc
Confidence            789999999999999987   4556778775 55544   899999999999999999 999999999999999999 66


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A  132 (389)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||.+-+
T Consensus       101 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG----TRGSNHARIDAAEGP  151 (156)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC----CCccCcCcCcccccC
Confidence            999999999999999999999999999999999999    999999999998744

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.86  E-value=3.5e-22  Score=188.82  Aligned_cols=128  Identities=12%  Similarity=0.131  Sum_probs=111.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC------ChhhHhhcC-CCCCcCCCCCCcHHHHHHH----cCcHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP------NASSVDQKG-IGESSANDNAETPLFLATK----SGCIEIV   70 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~------~~~~Ll~~g-a~~n~~d~~G~tpLh~Aa~----~g~~~~v   70 (389)
                      |++++|+++|+++|.+|.   .+.+|||.|+..+      .++.|++.+ ++++.+|..|+||||+|+.    .|+.+++
T Consensus       145 ~~v~~Ll~~Gad~n~~d~---~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v  221 (327)
T 1sw6_A          145 ELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA  221 (327)
T ss_dssp             HHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHcCCCCCCcCC---CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHH
Confidence            789999999999999997   5568899888864      456777776 7899999999999999999    8999999


Q ss_pred             HHHHHHC-------------------CC-------------------------CccccccCCChHHHHHHHhCChHHHHH
Q 016455           71 KEIFNVY-------------------PQ-------------------------AVEHIDDEGRNILHVAIKYRQLEIFEL  106 (389)
Q Consensus        71 ~~Ll~~~-------------------~~-------------------------~~~~~d~~G~t~Lh~A~~~~~~~iv~~  106 (389)
                      +.|++..                   ++                         +++.+|.+|+||||+|+++|+.+++++
T Consensus       222 ~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~  301 (327)
T 1sw6_A          222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA  301 (327)
T ss_dssp             HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9998431                   11                         478899999999999999999999999


Q ss_pred             HHccCCcccccccccccCCcccchhccccC
Q 016455          107 VVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus       107 Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      |+++|++    ++.+|.+|+||||+|++.|
T Consensus       302 Ll~~Gad----~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          302 LLDYGAD----PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHTTCC----TTCCCTTSCCGGGGTCC--
T ss_pred             HHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence            9999999    9999999999999999864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=1.7e-22  Score=193.27  Aligned_cols=172  Identities=15%  Similarity=0.072  Sum_probs=133.7

Q ss_pred             HHHHHHHhC----CCCCcc-----------------ccccCCCCcHHHHHccCCC--Chh---hHhhcCCCCCcCCCCCC
Q 016455            2 ELARFLIRR----DTSWEI-----------------TDSFQDQSKPKIHRYGANP--NAS---SVDQKGIGESSANDNAE   55 (389)
Q Consensus         2 e~v~~Ll~~----ga~vn~-----------------~d~~~~~~~~~lh~a~~~~--~~~---~Ll~~ga~~n~~d~~G~   55 (389)
                      |++++|+++    |++++.                 .|.   .+.++||.|+..+  ..+   +|+++|++++.+|..|.
T Consensus        98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~  174 (364)
T 3ljn_A           98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC---KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE  174 (364)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE---SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC---CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence            567777777    666665                 554   5567899998877  544   89999999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHHCCCC-----ccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccch
Q 016455           56 TPLFLATKSGCIEIVKEIFNVYPQA-----VEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh  130 (389)
                      ||||+|+..|+.+++++|+ +.+++     ++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||
T Consensus       175 t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~tpL~  249 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMM-DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLY  249 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHH-HHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC----TTCCCTTSCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH-hcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHH
Confidence            9999999999999999999 55666     999999999999999999999999999999999    9999999999999


Q ss_pred             hccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          131 MTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       131 ~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      +|+..++.+++      .++++........ ............+..+.||++.++...
T Consensus       250 ~A~~~g~~~~v------~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          250 LSVRAAMVLLT------KELLQKTDVFLIQ-ACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             HHHHTCCHHHH------HHHHHHSCHHHHH-TCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             HHHHhChHHHH------HHHHHcCCchhhh-cCcccCcccccccccccccchhhhhcc
Confidence            99999998887      2222221110000 000001112345778889988776543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.86  E-value=2.1e-22  Score=184.91  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=118.2

Q ss_pred             CHHHHHHHhCCCCC-------ccccc-cCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCC--------------CCC
Q 016455            1 MELARFLIRRDTSW-------EITDS-FQDQSKPKIHRYGANPNAS---SVDQKGIGESSAND--------------NAE   55 (389)
Q Consensus         1 ~e~v~~Ll~~ga~v-------n~~d~-~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~--------------~G~   55 (389)
                      .|++++|+++|+++       |.... ....+.+|||.|+..+..+   +|+++|++++.+|.              .|.
T Consensus        70 ~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~  149 (273)
T 2pnn_A           70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE  149 (273)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCB
T ss_pred             hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCC
Confidence            47899999998763       32111 1135678899998888765   89999999999987              799


Q ss_pred             cHHHHHHHcCcHHHHHHHHHH--CCCCccccccCCChHHHHHHHhCC---------hHHHHHHHccCCccccccc-----
Q 016455           56 TPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIKYRQ---------LEIFELVVQMEVPMRRLVR-----  119 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~~~~-----  119 (389)
                      ||||+|+..|+.+++++|++.  .|++++.+|.+|+||||+|+..|+         .+++++|+++|++    +|     
T Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~----~n~~~~~  225 (273)
T 2pnn_A          150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK----LHPTLKL  225 (273)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HCTTCCG
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh----ccccccc
Confidence            999999999999999999943  899999999999999999999998         7999999999988    65     


Q ss_pred             --ccccCCcccchhccccCCCccc
Q 016455          120 --KIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       120 --~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                        .+|.+|+||||+|++.|+.+++
T Consensus       226 ~~~~d~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          226 EEITNRKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCCCCCHHHHHHHhChHHHH
Confidence              5999999999999999998877

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=1.1e-22  Score=176.51  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=112.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC-------hhhHhhcCCCCCcCCCCCCcHHHHHHHcCc------HH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN-------ASSVDQKGIGESSANDNAETPLFLATKSGC------IE   68 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~-------~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~------~~   68 (389)
                      +.++.+++.|.  |..+.  ..+.+|||.|+..+.       +++|+++|+|+|.+|.+|+||||+|+..|+      .+
T Consensus        20 ~~~~~l~~~~~--~~~~~--~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~   95 (186)
T 3t8k_A           20 EDFLELFEKGY--EDKES--VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE   95 (186)
T ss_dssp             HHHHHHHHHSS--SCHHH--HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhcCc--ccccc--cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHH
Confidence            45667777664  34441  256789999998875       558999999999999999999999999987      68


Q ss_pred             HHHHHHHHCCCCccccccCCC-hHHHHHHHhC-----ChHHHHHHHc-cCCcccccccccccCCcccchhccccCCCccc
Q 016455           69 IVKEIFNVYPQAVEHIDDEGR-NILHVAIKYR-----QLEIFELVVQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        69 ~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~-----~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++|+ +.|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++    ++.+|.+|+||||+|++.++.+++
T Consensus        96 iv~~Ll-~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----~~~~d~~G~TpL~~A~~~~~~~~v  170 (186)
T 3t8k_A           96 LCKIFL-EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWGLTALEFVKRCQKPIAL  170 (186)
T ss_dssp             HHHHHH-HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred             HHHHHH-HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----CcccCCCCCCHHHHHHHcCCHHHH
Confidence            899999 78999999999999 9999999954     3569999999 9999    999999999999999999987766

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=181.46  Aligned_cols=114  Identities=13%  Similarity=0.091  Sum_probs=104.1

Q ss_pred             CCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.++||.|+..|..+   .|+++|+++|.+|.+|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~~~  135 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVS  135 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHc
Confidence            46678899999888765   889999999999999999999999999999999999 77999999999999999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+.+++++|++.|++    ++.. .+|+||||+|+..++.+++
T Consensus       136 ~~~~~v~~Ll~~g~~----~~~~-~~g~t~L~~A~~~g~~~~v  173 (285)
T 3d9h_A          136 GSWDCVNLLLQHGAS----VQPE-SDLASPIHEAARRGHVECV  173 (285)
T ss_dssp             TCHHHHHHHHHTTCC----SSCS-CTTSCHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHHHHCCCC----CCCC-CCCCCHHHHHHHcCCHHHH
Confidence            999999999999988    6654 4599999999999987776

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=8.8e-22  Score=170.84  Aligned_cols=153  Identities=8%  Similarity=0.011  Sum_probs=114.9

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCC-CCCCcHHHHHHHcCcH----HHHHHHHHHCCCCccccccCCChHHHHHHH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSAN-DNAETPLFLATKSGCI----EIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      ++++.|+..|..+   .+++.+  ++.++ ..|+||||+|+.+|+.    +++++|+ +.|+++|.+|.+|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHH
Confidence            3478888888877   344444  45555 6799999999999975    5899999 7899999999999999999999


Q ss_pred             hCC------hHHHHHHHccCCcccccccccccCCc-ccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhc--chh
Q 016455           98 YRQ------LEIFELVVQMEVPMRRLVRKIDNGGN-TLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVS--IPH  168 (389)
Q Consensus        98 ~~~------~~iv~~Ll~~g~~~~~~~~~~d~~G~-TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~--~~~  168 (389)
                      .++      .+++++|+++|++    +|.+|.+|+ ||||+|+..+..+..      ..         +.++.+.  ...
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gad----in~~d~~g~ttpLh~A~~~~~~~~~------~~---------~iv~~Ll~~~ga  145 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGAD----ITALYKPYKIVVFKNIFNYFVDENE------MI---------PLYKLIFSQSGL  145 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCC----SSSCBGGGTBCTTGGGGGCCSCHHH------HH---------HHHHHHHTSTTC
T ss_pred             cCCcchhhHHHHHHHHHHCCCC----CCccCCCcCchHHHHHHHcCCChhh------HH---------HHHHHHHHhcCC
Confidence            987      5789999999999    999999999 999999985543210      00         0011111  122


Q ss_pred             hhhhccCCCCChHHHHhhhhh-hhHHhhHHHHH
Q 016455          169 FRNHRNNMGFTPEELFATANN-ELRTQSKEWLK  200 (389)
Q Consensus       169 ~~~~~n~~g~Tpl~la~~~~~-~~~~~~~~~~~  200 (389)
                      .++.+|.+|+||+|+|.+.+. +..+...++.+
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            368899999999999988654 33444444444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.84  E-value=7e-22  Score=178.20  Aligned_cols=138  Identities=19%  Similarity=0.135  Sum_probs=93.6

Q ss_pred             CCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      ++.++||.|+..+..   +.|+++|++++. +..|.||||.|+..|+.++++.|+ +.+++++.+|..|+||||+|+.+|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcC
Confidence            566788888877654   489999999986 477999999999999999999999 778899999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC-
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF-  178 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~-  178 (389)
                      +.+++++|+++|++    +|.+|.+|+||||+|+..++.+++      .+++..+             ..++.+|.+|. 
T Consensus        82 ~~~~v~~Ll~~ga~----~~~~d~~g~tpL~~A~~~~~~~~v------~~Ll~~g-------------a~~~~~~~~~~~  138 (239)
T 1ycs_B           82 HTEIVKFLVQFGVN----VNAADSDGWTPLHCAASCNNVQVC------KFLVESG-------------AAVFAMTYSDMQ  138 (239)
T ss_dssp             CHHHHHHHHHHTCC----TTCCCTTCCCHHHHHHHTTCHHHH------HHHHHTT-------------CCTTCCCSSSCC
T ss_pred             CHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHH------HHHHHcC-------------CCcceecCCCCc
Confidence            99999999999998    999999999999999999988776      2221111             11466776666 


Q ss_pred             ChHHHHh
Q 016455          179 TPEELFA  185 (389)
Q Consensus       179 Tpl~la~  185 (389)
                      ||+|++.
T Consensus       139 t~l~~a~  145 (239)
T 1ycs_B          139 TAADKCE  145 (239)
T ss_dssp             CHHHHCC
T ss_pred             chHHHHH
Confidence            9999983

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=6.8e-21  Score=164.48  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccc-cCCChHHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~   98 (389)
                      .+.+|+|.|+..+..+   .|++ |+++|.+|..|+||||+|+..|+.+++++|+ +.|++++.+| ..|+||||+|+..
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHhc
Confidence            5568899999988766   7778 9999999999999999999999999999999 7899999998 8999999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~  137 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|++.++
T Consensus       121 ~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          121 VRPEVVEALVELGAD----IEVEDERGLTALELAREILK  155 (183)
T ss_dssp             TCHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCC----CcCCCCCCCCHHHHHHHhcc
Confidence            999999999999998    99999999999999987543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.83  E-value=5.8e-21  Score=180.69  Aligned_cols=131  Identities=14%  Similarity=0.220  Sum_probs=114.2

Q ss_pred             HHHHHHHh-CCCCCccccccCCCCcHHHHHccCCCCh----hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIR-RDTSWEITDSFQDQSKPKIHRYGANPNA----SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~-~ga~vn~~d~~~~~~~~~lh~a~~~~~~----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|++ .|+++|..|..+.+.++....++..+..    ++|+++|+++|.+|.+|+||||+|+..|+.++++.|++.
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            78999995 6999999998666555444445555543    478999999999999999999999999999999999977


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+.+++.+|.+|+||||+|+++|+.+++++|+++|++    +|.     .||||+|++.++.+++
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n~-----~~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDC-----GDLVMTARRNYDHSLV  317 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----STT-----CCHHHHHHHTTCHHHH
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCC-----CCHHHHHHHcCCHHHH
Confidence            7999999999999999999999999999999999998    665     4599999999998877

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=3.8e-21  Score=154.57  Aligned_cols=113  Identities=27%  Similarity=0.391  Sum_probs=104.7

Q ss_pred             CcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           24 SKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      +.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+.+++.+|..|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCh
Confidence            456788888877655   889999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        81 ~~~~~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           81 LEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCcHHHH
Confidence            9999999999998    999999999999999999887766

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1e-20  Score=171.26  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=99.8

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccc-cCCChHHHHHHHh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~   98 (389)
                      .+.++||.|+..+..+   .|++ |+++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+| ..|+||||+|+.+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHHc
Confidence            4568999999998866   6777 9999999999999999999999999999999 7899999998 8899999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhcccc
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~  135 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..
T Consensus       122 g~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          122 VRPEVVEALVELGAD----IEVEDERGLTALELAREI  154 (244)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC----CCCCCCCCCcHHHHHHHH
Confidence            999999999999999    999999999999999853

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.83  E-value=2.3e-20  Score=153.07  Aligned_cols=107  Identities=14%  Similarity=0.109  Sum_probs=99.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCC-CCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDN-AETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|.+|.   .+.+|||.|+. +..+   +|+++|++++.+|.. |.||||+|+..|+.+++++|+ +.
T Consensus        26 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~  100 (136)
T 1d9s_A           26 ETVRQLLEAGADPNALNR---FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA  100 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCcCCcCC---CCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            789999999999999986   55678899988 7665   899999999999999 999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      +++++.+|..|+||||+|+.+++.+++++|+++|++
T Consensus       101 ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.82  E-value=1e-20  Score=169.23  Aligned_cols=133  Identities=20%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+.  ..+.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.++++.|+ +.+
T Consensus        56 ~~v~~Ll~~~~~~~~~~~--~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~  132 (240)
T 3eu9_A           56 DLVKYYISKGAIVDQLGG--DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-AKG  132 (240)
T ss_dssp             HHHHHHHHTTCCTTCCBT--TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCcchhhcC--CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHH-hcC
Confidence            456666666665554332  22345555555544433   555666666666666666666666666666666666 445


Q ss_pred             CCccccccCCChHHHHHHHhCC-hHHHHHHHccCCccccccccccc-CCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQ-LEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++.+|..|+||||+|+..++ .+++++|++.|++    ++..+. +|+||||+|+..++.+++
T Consensus       133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v  193 (240)
T 3eu9_A          133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS----VNLGDKYHKNTALHWAVLAGNTTVI  193 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC----TTCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC----cchhhccCCCcHHHHHHHcCCHHHH
Confidence            5555555555555555554443 4555555555555    555554 555555555555554444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=174.62  Aligned_cols=126  Identities=15%  Similarity=0.028  Sum_probs=102.0

Q ss_pred             HHHHHHHhCCCCCccccc---cCCCCcHHHHHccCC---CC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDS---FQDQSKPKIHRYGAN---PN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~---~~~~~~~~lh~a~~~---~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +.++.|++.|+++|....   ....+.++||.|+..   +.   +++|+++|+++|.+|.+|+||||+|+..|+.+++++
T Consensus       165 ~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~  244 (301)
T 2b0o_E          165 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  244 (301)
T ss_dssp             HHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            568889999999987310   113667889988765   44   448999999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCC
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~  138 (389)
                      |+ +.|++++.+|.+|+||||+|+..|+.+++++|++.|++          .|+||||+|++.|+.
T Consensus       245 Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          245 LL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HH-HTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC--------
T ss_pred             HH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhHHHHhcCCc
Confidence            99 78999999999999999999999999999999998754          589999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=4.7e-21  Score=170.48  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      .+.++||.|+..+..+   .|+++|+++|.+|..|+||||+|+..|+.+++++|++..+++++.+|..|+||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            3457899998888765   8899999999999999999999999999999999995459999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccchhccccCCCccccc
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~  143 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.
T Consensus       152 ~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~l~~  191 (222)
T 3ehr_A          152 YADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKK  191 (222)
T ss_dssp             CHHHHHHHHHHTCC----SCCCCTTSCCHHHHCCSHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCC----CccccCCCCCHHHHhcchhHHHHHHH
Confidence            99999999999999    99999999999999999887776643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=176.44  Aligned_cols=134  Identities=19%  Similarity=0.171  Sum_probs=111.5

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCc------CCCCCCcHHHHHHHc---CcHHHHHHHHHHCCCCccccccCCChHH
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESS------ANDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRNIL   92 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~------~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~L   92 (389)
                      ..++|.|+..+..+   .|++.|+|++.      .|..|+||||+|+..   |+.+++++|+ .+|++++.+|.+|+|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCCCCCCCHH
Confidence            35688898888766   67899999988      688999999999997   8999999999 66999999999999999


Q ss_pred             HHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhh
Q 016455           93 HVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNH  172 (389)
Q Consensus        93 h~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~  172 (389)
                      |+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .++++                   .
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~~~~~iv------~~Ll~-------------------~  281 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRAL----VGTVNEAGETALDIARKKHHKECE------ELLEQ-------------------A  281 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----CSCCCTTSCCHHHHHHHHTCHHHH------HHHHH-------------------H
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHH------HHHHH-------------------h
Confidence            999999999999999999999    999999999999999999987776      22211                   1


Q ss_pred             ccCCCCChHHHHhhhh
Q 016455          173 RNNMGFTPEELFATAN  188 (389)
Q Consensus       173 ~n~~g~Tpl~la~~~~  188 (389)
                      ....|.||+|+|++.+
T Consensus       282 ga~~g~tpLh~A~~~g  297 (301)
T 2b0o_E          282 QAGTFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHTTSSCCC------
T ss_pred             cCCCCCChhHHHHhcC
Confidence            2226899999998754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=9.9e-21  Score=152.40  Aligned_cols=112  Identities=21%  Similarity=0.206  Sum_probs=95.7

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccch
Q 016455           51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh  130 (389)
                      +..|.||||+|+..|+.++++.|+ +.+.+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCHHH
Confidence            567899999999999999999999 78899999999999999999999999999999999998    9999999999999


Q ss_pred             hccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          131 MTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       131 ~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      +|+..++.+++      .++++.      .       ...+.+|.+|+||+++|.+
T Consensus        79 ~A~~~~~~~~v------~~Ll~~------g-------a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           79 SAVYEGHVSCV------KLLLSK------G-------ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHTCHHHH------HHHHHT------T-------CCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHcCCHHHH------HHHHHc------C-------CCCCCcCCCCCCHHHHhCC
Confidence            99999987766      111111      0       1157889999999999854

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=4.9e-20  Score=176.41  Aligned_cols=143  Identities=16%  Similarity=0.152  Sum_probs=107.2

Q ss_pred             CcHHHHHccCC-CChh---hHhhcCCCCCcCC--CCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHH
Q 016455           24 SKPKIHRYGAN-PNAS---SVDQKGIGESSAN--DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        24 ~~~~lh~a~~~-~~~~---~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      +.++||.|+.. +..+   .|+++|+|+|..|  .+|.||||+|+..|+.+++++|+ .+|++++.+|..|+||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL-~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHH
Confidence            34689999988 7765   7899999999988  88999999999999999999999 7899999999999999999999


Q ss_pred             hCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCC
Q 016455           98 YRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMG  177 (389)
Q Consensus        98 ~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g  177 (389)
                      .|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++      .+++....          ........+..+
T Consensus       278 ~g~~~~v~~LL~~Gad----~~~~d~~G~TpL~~A~~~g~~~iv------~lLl~~~~----------~~~~~~~~~~~~  337 (368)
T 3jue_A          278 LGHTGLACLFLKRGAD----LGARDSEGRDPLTIAMETANADIV------TLLRLAKM----------REAEAAQGQAGD  337 (368)
T ss_dssp             HTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHHHC----------------------
T ss_pred             cCcHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHCCCHHHH------HHHHHcCC----------CcccccccCCCC
Confidence            9999999999999999    999999999999999999988777      22221111          011124556788


Q ss_pred             CChHHHHhhh
Q 016455          178 FTPEELFATA  187 (389)
Q Consensus       178 ~Tpl~la~~~  187 (389)
                      .|+++++...
T Consensus       338 ~t~l~i~~~~  347 (368)
T 3jue_A          338 ETYLDIFRDF  347 (368)
T ss_dssp             ----------
T ss_pred             CCHHHHHHHH
Confidence            8999987764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=1.1e-19  Score=148.91  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|.   .+.++||.|+..+..+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        28 ~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~g  103 (136)
T 2jab_A           28 DEVRILMANGADVNAKDE---YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHG  103 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            789999999999999986   4557788888777654   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccC
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQME  111 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g  111 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|
T Consensus       104 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=1.5e-20  Score=162.28  Aligned_cols=114  Identities=19%  Similarity=0.228  Sum_probs=98.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccc
Q 016455           51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLL  129 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpL  129 (389)
                      |.+|.||||+|+..|+.++++.|++  +.+++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+| .+|+|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD----LDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCCHH
Confidence            5689999999999999999999994  889999999999999999999999999999999998    99998 8999999


Q ss_pred             hhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          130 HMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       130 h~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      |+|+..++.+++      .+++..+             ..++.+|.+|+||+|+|.+..+
T Consensus       115 ~~A~~~~~~~~v------~~Ll~~g-------------a~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          115 HMAAGYVRPEVV------EALVELG-------------ADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHHHHTTCHHHH------HHHHHHT-------------CCTTCCCTTSCCHHHHHHHHHH
T ss_pred             HHHHhcCcHHHH------HHHHHcC-------------CCCcCCCCCCCCHHHHHHHhcc
Confidence            999999987776      2222111             1157889999999999987543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=7.7e-20  Score=139.71  Aligned_cols=84  Identities=32%  Similarity=0.467  Sum_probs=67.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhc
Q 016455           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A  132 (389)
                      +|+||||+|+..|+.+++++|+ +.|++++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHH
Confidence            4778888888888888888888 66788888888888888888888888888888888877    788888888888888


Q ss_pred             cccCCCccc
Q 016455          133 GIKRSDYVP  141 (389)
Q Consensus       133 ~~~~~~~~~  141 (389)
                      +..++.+++
T Consensus        76 ~~~~~~~~~   84 (93)
T 1n0q_A           76 ARNGHLEVV   84 (93)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            887776655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=5.1e-19  Score=142.03  Aligned_cols=108  Identities=24%  Similarity=0.404  Sum_probs=98.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..|.   .+.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        16 ~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g   91 (126)
T 1n0r_A           16 EVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAG   91 (126)
T ss_dssp             HHHHHHHHHTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCcCC---CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH-HcC
Confidence            689999999999998886   4557788887777655   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        92 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=4.6e-19  Score=163.58  Aligned_cols=112  Identities=15%  Similarity=0.215  Sum_probs=101.8

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCC------cCCCCCCcHHHHHHHc---CcHHHHHHHHHHCCCCccccccCCChHH
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGES------SANDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRNIL   92 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n------~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~L   92 (389)
                      ..+++.|+..+..+   .+++.|++++      ..|..|+||||+|+..   |+.+++++|+ +.|+++|.+|.+|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll-~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH-HCCCCccccCCCCCCHH
Confidence            45688888888766   5788899954      4588999999999999   8999999999 66999999999999999


Q ss_pred             HHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           93 HVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        93 h~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~~v  254 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCE  254 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCCccCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999    999999999999999999987776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=9e-19  Score=133.70  Aligned_cols=89  Identities=26%  Similarity=0.411  Sum_probs=82.0

Q ss_pred             CcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           24 SKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      +.+|||.|+..+..+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.|++++.+|.+|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCC
Confidence            346789888877655   889999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             hHHHHHHHccCCc
Q 016455          101 LEIFELVVQMEVP  113 (389)
Q Consensus       101 ~~iv~~Ll~~g~~  113 (389)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=1.4e-19  Score=160.91  Aligned_cols=116  Identities=20%  Similarity=0.240  Sum_probs=100.6

Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHcc-CCcccccccccccCCcc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM-EVPMRRLVRKIDNGGNT  127 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~d~~G~T  127 (389)
                      ..|.+|.||||+|+..|+.++++.|+ +.+.+++.+|..|+||||+|+.+|+.+++++|++. |++    ++.+|.+|+|
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----~~~~d~~g~t  142 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE----LNQQNKLGDT  142 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----CCCCCTTSCC
T ss_pred             ccccccccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----ccccCCCCCC
Confidence            34667899999999999999999999 78999999999999999999999999999999998 888    9999999999


Q ss_pred             cchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          128 LLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       128 pLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      |||+|+..++.+++      .+++..+.             .++.+|.+|+||+++|.+..
T Consensus       143 pL~~A~~~~~~~~v------~~Ll~~ga-------------~~~~~~~~g~t~l~~A~~~~  184 (222)
T 3ehr_A          143 ALHAAAWKGYADIV------QLLLAKGA-------------RTDLRNIEKKLAFDMATNAA  184 (222)
T ss_dssp             HHHHHHHHTCHHHH------HHHHHHTC-------------CSCCCCTTSCCHHHHCCSHH
T ss_pred             HHHHHHHcCCHHHH------HHHHHcCC-------------CCccccCCCCCHHHHhcchh
Confidence            99999999988776      22222111             15788999999999998743

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.76  E-value=5.7e-19  Score=176.18  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=103.5

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcC------CCCCCcHHHHHHH---cCcHHHHHHHHHHCCCCccccccCCChHHH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSA------NDNAETPLFLATK---SGCIEIVKEIFNVYPQAVEHIDDEGRNILH   93 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~------d~~G~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh   93 (389)
                      ..||.|+..+..+   .|+++|+|+|.+      |..|+||||+|+.   .|+.+++++|+ ++|+++|.+|.+|+||||
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll-~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHH-HHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHH-HcCCCCCccCCCCCcHHH
Confidence            5688888888766   889999999977      8899999999976   89999999999 679999999999999999


Q ss_pred             HHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           94 VAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        94 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..++.+++
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~~  256 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRAL----VGTVNEAGETALDIARKKHHKECE  256 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCC----CSCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999    999999999999999999998877

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=7.2e-20  Score=165.61  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccc
Q 016455           51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLL  129 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpL  129 (389)
                      +.+|.||||+|++.|+.++++.|++  +.+++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+| .+|+|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD----LDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCcCCCCCCCCHH
Confidence            4579999999999999999999994  889999999999999999999999999999999999    99998 8899999


Q ss_pred             hhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          130 HMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       130 h~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      |+|+..++.+++      .+++..+             ..++.+|.+|+||+|+|++..
T Consensus       116 ~~A~~~g~~~~v------~~Ll~~g-------------a~~~~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A          116 HMAAGYVRPEVV------EALVELG-------------ADIEVEDERGLTALELAREIL  155 (244)
T ss_dssp             HHHHHTTCHHHH------HHHHHTT-------------CCTTCCCTTCCCHHHHHHHHH
T ss_pred             HHHHHcCCHHHH------HHHHHCC-------------CCCCCCCCCCCcHHHHHHHHH
Confidence            999999988776      2221111             115778999999999998643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=4.5e-19  Score=140.75  Aligned_cols=87  Identities=26%  Similarity=0.341  Sum_probs=47.5

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccc
Q 016455           50 ANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLL  129 (389)
Q Consensus        50 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpL  129 (389)
                      +|.+|+||||+|+..|+.++++.|+ +.+.+++.+|..|+||||+|+..++.+++++|+++|++    ++.+|.+|+|||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~d~~g~tpl   79 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----VNARSKDGNTPE   79 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----TTCCCTTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CcccCCCCCCHH
Confidence            3455555555555555555555555 44555555555555555555555555555555555555    555555555555


Q ss_pred             hhccccCCCccc
Q 016455          130 HMTGIKRSDYVP  141 (389)
Q Consensus       130 h~A~~~~~~~~~  141 (389)
                      |+|+..++.+++
T Consensus        80 ~~A~~~~~~~~~   91 (115)
T 2l6b_A           80 HLAKKNGHHEIV   91 (115)
T ss_dssp             HHHHTTTCHHHH
T ss_pred             HHHHHCCCHHHH
Confidence            555555544433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.75  E-value=2.6e-18  Score=158.47  Aligned_cols=121  Identities=12%  Similarity=0.018  Sum_probs=103.4

Q ss_pred             HHHHHHHhCCCCCccc---cccCCCCcHHHHHccCC---CC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEIT---DSFQDQSKPKIHRYGAN---PN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~---d~~~~~~~~~lh~a~~~---~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +.++.+++.|++++..   +.....+.+|||.|+..   +.   +++|+++|+++|.+|.+|+||||+|+..|+.+++++
T Consensus       144 ~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~  223 (278)
T 1dcq_A          144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL  223 (278)
T ss_dssp             HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            4577899999996643   11224567889999876   54   448999999999999999999999999999999999


Q ss_pred             HHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhcccc
Q 016455           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~  135 (389)
                      |+ +.|++++.+|.+|+||||+|+..|+.+++++|+++|++            .+++|.++..
T Consensus       224 Ll-~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~v~~  273 (278)
T 1dcq_A          224 LL-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG------------RFNSHVHVEY  273 (278)
T ss_dssp             HH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT------------CCCSSCCCCC
T ss_pred             HH-HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcceeeec
Confidence            99 78999999999999999999999999999999998864            5778877754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=7.6e-19  Score=139.46  Aligned_cols=102  Identities=25%  Similarity=0.307  Sum_probs=92.7

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhC
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~   99 (389)
                      .+.+++|.|+..+..+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+..+
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-TTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHCC
Confidence            5567889888877655   889999999999999999999999999999999999 779999999999999999999999


Q ss_pred             ChHHHHHHHccCCcccccccccccCCcccc
Q 016455          100 QLEIFELVVQMEVPMRRLVRKIDNGGNTLL  129 (389)
Q Consensus       100 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpL  129 (389)
                      +.+++++|+++|++    +|.++.+|.||-
T Consensus        87 ~~~~~~~Ll~~ga~----~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDAKGAD----VNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHTTSSS----HHHHSCCCC---
T ss_pred             CHHHHHHHHHcCCC----CCcCCccccccc
Confidence            99999999999999    999999999883

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=5.2e-18  Score=162.33  Aligned_cols=132  Identities=15%  Similarity=0.113  Sum_probs=99.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|+++|..+.+ ..+.++||.|+..+..+   +|+++|+++|.+|..|+||||+|+..|+.+++++|+ ..|
T Consensus       214 ~~v~~LL~~Gadvn~~~~~-~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL-~~G  291 (368)
T 3jue_A          214 PTMADALAHGADVNWVNGG-QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRG  291 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCccccc-cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH-HCc
Confidence            6889999999999988732 24567899998888755   899999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccC
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~  136 (389)
                      ++++.+|.+|+||||+|+..++.+++++|++.+.. .......+..+.|+++++....
T Consensus       292 ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999987643 2224456677889998877543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=2.3e-18  Score=135.83  Aligned_cols=90  Identities=20%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             CCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCc
Q 016455           47 ESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~  126 (389)
                      ++..|.+|.||||+|+..|+.+++++|+ ..+++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~   91 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VXAQDKFGK   91 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccccCCC
Confidence            3566889999999999999999999999 77999999999999999999999999999999999998    999999999


Q ss_pred             ccchhccccCCCccc
Q 016455          127 TLLHMTGIKRSDYVP  141 (389)
Q Consensus       127 TpLh~A~~~~~~~~~  141 (389)
                      ||||+|+..++.+++
T Consensus        92 tpl~~A~~~~~~~~~  106 (110)
T 2zgd_A           92 TAFDISIDNGNEDLA  106 (110)
T ss_dssp             CHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHcCCHHHH
Confidence            999999999887665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.70  E-value=6e-19  Score=169.41  Aligned_cols=111  Identities=7%  Similarity=0.057  Sum_probs=91.1

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCC---CcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCC---ccccccCCChHHHHH
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGE---SSANDNAETPLFLATKSGCIEIVKEIFNVYPQA---VEHIDDEGRNILHVA   95 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~G~t~Lh~A   95 (389)
                      .+|||.|+..|..+   .|+++|+..   +..|..|.||||+|+++|+.+++++|+ +.|++   .+..+.+ +||||+|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll-~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccccCCCC-CCHHHHH
Confidence            38899999888766   888998833   234557889999999999999999999 66754   2333333 9999999


Q ss_pred             HHhCChHHHHHHHccCCcccccccc--cccCCcccchhcc-ccCCCccc
Q 016455           96 IKYRQLEIFELVVQMEVPMRRLVRK--IDNGGNTLLHMTG-IKRSDYVP  141 (389)
Q Consensus        96 ~~~~~~~iv~~Ll~~g~~~~~~~~~--~d~~G~TpLh~A~-~~~~~~~~  141 (389)
                      +.+|+.+++++|+++|++    ++.  +|.+|+||||+|+ ..|+.+++
T Consensus       171 a~~G~~eiv~~Ll~~ga~----~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPT----EATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGG----GHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HHCCCHHHHHHHHHcCCc----cchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            999999999999999988    777  8999999999999 99998887

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=9.5e-18  Score=161.04  Aligned_cols=127  Identities=14%  Similarity=0.048  Sum_probs=102.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCC---CcCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGE---SSANDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      |++++|+++|+.....+.....+.+|||.|+..|..+   +|+++|+|+   +..+.+ .||||+|+.+|+.+++++|+ 
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll-  183 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLC-  183 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHH-
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHH-
Confidence            7899999999832211111123456899999988766   899999873   333333 99999999999999999999 


Q ss_pred             HCCCCccc--cccCCChHHHHHH-HhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           76 VYPQAVEH--IDDEGRNILHVAI-KYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        76 ~~~~~~~~--~d~~G~t~Lh~A~-~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.|++++.  .|.+|+||||+|+ .+|+.+++++|++.|+           .|+||||+|+..|+.+++
T Consensus       184 ~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          184 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-----------MLAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----------HHHHHHHCTTTTTTTTHH
T ss_pred             HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----------ccchHHHHHHHCCCHHHH
Confidence            77888887  8999999999999 9999999999999763           289999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=1.5e-15  Score=119.52  Aligned_cols=85  Identities=20%  Similarity=0.318  Sum_probs=78.6

Q ss_pred             CCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHh
Q 016455           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.+++|.|+..+..+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ ..|++++.+|..|+||||+|+..
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCcHHHHHHHc
Confidence            35668899998888765   789999999999999999999999999999999999 77999999999999999999999


Q ss_pred             CChHHHHHH
Q 016455           99 RQLEIFELV  107 (389)
Q Consensus        99 ~~~~iv~~L  107 (389)
                      |+.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+ N               +  +TPL LA +   + +V+ +       +   D +G+ 
Sbjct: 208 HGADVNV------------RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 91  ILHVAIKYRQLEIFELVVQ 109
            L +A++ +  +I EL+ +
Sbjct: 256 ALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 29  HRYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEG 88
             Y    N +   +    +        T L  A + G +E++K + +     V   D+ G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 89  RNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPA 148
           RN L  A+        E +  + +     V      G T L +   K+            
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH----------- 231

Query: 149 LVLQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
           L L + LL  E +E        N  ++ G T 
Sbjct: 232 LGLVQRLLEQEHIE-------INDTDSDGKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 48  SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
           ++  DN    L  A ++  +++V+++           ++ G   LH A++  + +I EL+
Sbjct: 1   AAVEDN--HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 108 VQMEVPM 114
           ++     
Sbjct: 59  LRHGADP 65

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMR 115
           TPL +A+  G + IVK +      +    + +    LH+A +    E+ + ++Q +    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-- 58

Query: 116 RLVRKIDNGGNTLLHM 131
             V        T LH 
Sbjct: 59  --VNAKAKDDQTPLHC 72

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 1/106 (0%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFL 60
           + +A  LI+     + T             YG       + Q     ++      +PL  
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 336

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFEL 106
           A + G  +IV  +      +   +  +G   L +A +   + + ++
Sbjct: 337 AAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 30  RYGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
           + GA+PN             +N   ETPL +A ++G  E+ K +       V     + +
Sbjct: 21  QRGASPNV------------SNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQ 67

Query: 90  NILHVAIKYRQLEIFELVVQM 110
             LH A +     + +L+++ 
Sbjct: 68  TPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 26/204 (12%)

Query: 1   MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNASSVDQKGIGESSANDNAETPLFL 60
           +++ + L+ R  S                +      A S+ Q G   ++ +    TPL L
Sbjct: 178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 237

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK 120
           A + G  E+V  + +         +  G   LH+  +   + + +++++  V     V  
Sbjct: 238 AAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDA 292

Query: 121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTP 180
               G T LH+     +  + + +                          N +  +G++P
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQH-------------------QADVNAKTKLGYSP 333

Query: 181 EELFATANNELRTQSKEWLKHTAD 204
             L   A           LK+ A 
Sbjct: 334 --LHQAAQQGHTDIVTLLLKNGAS 355

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 31  YGANPNASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEG 88
           Y A+ N ++  Q           +E   F+A  +GC   +  +  +    + V+ I  E 
Sbjct: 68  YYAHYNRNAK-QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 89  RNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT 132
                +A +   L +   + ++       +  I         + 
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEI--MAMIQAENYHAFRLA 168

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
            PL  A        V+E+ +  P  +   D +GR  LH ++ ++  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQA---VEHIDDEGRNILHVAIKYRQ 100
           ++ +TPL +A   G +  V  + N++ Q    ++  ++  +  LH+A+    
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 86  DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           ++G   LH+A+    L     +V +     R +   +N   T LH+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 41  DQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ 100
            +KG  +   +++ +TP+ LA + G IE+V  +      +VE +D        +A     
Sbjct: 208 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNH 266

Query: 101 LEIFEL 106
             I ++
Sbjct: 267 HNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 55  ETPLFLATK-SGCIEIVKEIFNVYPQAVEHIDDE-GRNILHVAIKYRQLEIFELVVQMEV 112
           E+P+ L T+ +G   I + I     ++V  ID    R +LH        E  E ++  E 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 113 PMRRL----VRKIDNGGNTLLHM 131
                    V  +D   NT L +
Sbjct: 58  KECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM 110
                T L  A +   + IVK +        +  D++G+  + +A +  ++E+   ++Q 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 111 EVPMRRLVRKIDNGGNTLLHM 131
                  V  +D   +T   +
Sbjct: 244 GAS----VEAVDATDHTARQL 260

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHM 131
           ++ ++G   LH+A+ ++     + ++         +   ++ G T LH+
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHL 51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 51  NDNAETPLFLATKSGCIEIVKEI--FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVV 108
            ++ +T L LA        +  +  F+   + ++  +D G+  LH+A    +    E + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 109 QMEVPM 114
                +
Sbjct: 66  AAGAGV 71

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 51  NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQM 110
             +  T L +A   G  E++K +       V   D +G   LH A  + + E   ++V+ 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 111 EVPMRRLVRKIDNGGNTLLHM 131
                  +  ++  G T   +
Sbjct: 255 LCD----MEAVNKVGQTAFDV 271

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 87  EGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMT 132
           +G + LH+AI + +  +   V++        +   +N   T LH+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.85
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.84
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.82
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.74
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.68

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-24  Score=191.69  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=122.0

Q ss_pred             HHHHhCCCCCccccccCCCCcHHHHHccCCCChh------------------------------------hHhhcCCCCC
Q 016455            5 RFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS------------------------------------SVDQKGIGES   48 (389)
Q Consensus         5 ~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~------------------------------------~Ll~~ga~~n   48 (389)
                      ++|.+.+.+++.+|.+   +.+|||+|+..|..+                                    .|+++|++++
T Consensus        21 ~~l~~~~~~~~~~D~~---G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~   97 (223)
T d1uoha_          21 ESILADKSLATRTDQD---SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN   97 (223)
T ss_dssp             HHHHHCGGGGGCCCTT---SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHhCCCcCcCcCCC---CCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeE
Confidence            4444566777777763   445677666555332                                    4677888888


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                      .+|.+|.||||+|+..|+.+++++|+ +.|.+++.+|..|.||||+|+..++.+++++|.+.+.+    ++.+|.+|+||
T Consensus        98 ~~d~~g~tpL~~A~~~~~~e~~~~Ll-~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~g~Tp  172 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS----TNIQDTEGNTP  172 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTCCCH
T ss_pred             eeCCCCCchhhHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce----eeeccCCCCce
Confidence            88888889999998888888888888 67888888888888999999888888888888888887    88888889999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhhhhH
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANNELR  192 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~~~~  192 (389)
                      ||+|+..++.+++      .++++.+             ..++.+|++|+||+|+|+..+.+..
T Consensus       173 L~~Aa~~g~~~~v------~~LL~~G-------------ad~~~~d~~g~tpl~~A~~~~~~i~  217 (223)
T d1uoha_         173 LHLACDEERVEEA------KLLVSQG-------------ASIYIENKEEKTPLQVAKGGLGLIL  217 (223)
T ss_dssp             HHHHHHTTCHHHH------HHHHHTT-------------CCSCCCCTTSCCHHHHCCTTHHHHH
T ss_pred             eccccccCcHHHH------HHHHHCC-------------CCCCCCCCCCCCHHHHHHCCCHHHH
Confidence            9999888877666      1111111             1157899999999999976555443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.4e-24  Score=194.96  Aligned_cols=165  Identities=21%  Similarity=0.186  Sum_probs=131.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      +++++|+++|++++..|.....+.||||.|+..+..+   .|+++|++++.+|.+|.||||+|+..|+.++++.|++.. 
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhcc
Confidence            6889999999986655554456778899988877655   889999999999999999999999999999998886411 


Q ss_pred             ---------------------------------------------CCCccccccCCChHHHHHHHhCChHHHHHHHccCC
Q 016455           78 ---------------------------------------------PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEV  112 (389)
Q Consensus        78 ---------------------------------------------~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~  112 (389)
                                                                   +.+++.+|.+|+||||+|+++++.+++++|++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~  182 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc
Confidence                                                         12345678889999999999999999999999988


Q ss_pred             ccccccc-ccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          113 PMRRLVR-KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       113 ~~~~~~~-~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +    .+ .++..|+||||+|++.++.+++      .++++.             ...++.+|++|+||+|+|.+.+.
T Consensus       183 ~----~~~~~~~~g~TpL~~A~~~~~~~~v------~~Ll~~-------------gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         183 D----LNKPEPTCGRTPLHLAVEAQAASVL------ELLLKA-------------GADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             C----TTCCCTTTCCCHHHHHHHTTCHHHH------HHHHHT-------------TCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             c----ccccccccccccccccccccHHHHH------HHHHHC-------------CCCCCCCCCCCCCHHHHHHHCCC
Confidence            7    44 4577899999999999887766      111111             01257899999999999887654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1e-23  Score=167.34  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=98.9

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      +||++|+..|..+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++|+ ..|++++.+|.+|+||||+|+.+|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCchh
Confidence            6799999998876   889999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccc
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      ++++|+++|++    ++.+|.+|+||||+|..
T Consensus        83 ~v~~Ll~~Gad----~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          83 CVKLLLSKGAD----KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHTTCCC----SSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhccccc----ceeeCCCCCCHHHHHhH
Confidence            99999999999    99999999999999954

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-23  Score=183.02  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..|.+   +.+|||.|+..+..+   +|+++|++++.+|..|.||||+|+..|+.++++.|+ ..+
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~---g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~-~~~  159 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQN---GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYK  159 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTT---CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             chhHHHhccCceeEeeCCC---CCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc-ccc
Confidence            7899999999999999974   456788887776655   889999999999999999999999999999999998 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|. .++.+++
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             ceeeeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHH-CCCHHHH
Confidence            99999999999999999999999999999999999    9999999999999985 5665554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=1.3e-22  Score=185.41  Aligned_cols=159  Identities=18%  Similarity=0.197  Sum_probs=132.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+|+|..|.+   +.+|||.|+..|..+   +|+++|++.+..+..+.+|||.|+..|+.++++.|++ .+
T Consensus        54 ~~v~~Ll~~Gadvn~~d~~---G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~-~~  129 (291)
T d1s70b_          54 EEVLRLLERGADINYANVD---GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-QG  129 (291)
T ss_dssp             HHHHHHHHHCCCTTCBCTT---CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TT
T ss_pred             HHHHHHHHCCCCCCccCCC---CCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccc-cC
Confidence            7899999999999999974   456788888777655   8999999999999999999999999999999999983 33


Q ss_pred             CCc------------------------------------------------------------cccccCCChHHHHHHHh
Q 016455           79 QAV------------------------------------------------------------EHIDDEGRNILHVAIKY   98 (389)
Q Consensus        79 ~~~------------------------------------------------------------~~~d~~G~t~Lh~A~~~   98 (389)
                      ...                                                            ...+..|.||||.|+..
T Consensus       130 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            322                                                            22445688999999999


Q ss_pred             CChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCC
Q 016455           99 RQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGF  178 (389)
Q Consensus        99 ~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|++.|++    +|.+|.+|+||||+|++.|+.+++      .++++.+.             .++.+|++|+
T Consensus       210 ~~~~~~~~Ll~~g~d----in~~~~~g~TpL~~A~~~g~~~iv------~lLl~~Ga-------------dv~~~d~~G~  266 (291)
T d1s70b_         210 GYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEAC------RILVENLC-------------DMEAVNKVGQ  266 (291)
T ss_dssp             TCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHH------HHHHHTTC-------------CTTCCCTTSC
T ss_pred             CChhhhcccccceec----ccccccCCCCHHHHHHHcCCHHHH------HHHHHCCC-------------CCCCcCCCCC
Confidence            999999999999998    999999999999999999998877      22221111             1578899999


Q ss_pred             ChHHHHhhh
Q 016455          179 TPEELFATA  187 (389)
Q Consensus       179 Tpl~la~~~  187 (389)
                      ||+|+|++.
T Consensus       267 TaL~~A~e~  275 (291)
T d1s70b_         267 TAFDVADED  275 (291)
T ss_dssp             CTTTSCCSG
T ss_pred             CHHHHHHHH
Confidence            999999863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=163.11  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |+++.|+++ |+++|..|.   .+.+|+|.|+. +.   ++.|+++|++++..+..|.+|++.++..++.++++.++ +.
T Consensus        16 ~~vk~lL~~~~~~~n~~d~---~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~   90 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNR---FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EH   90 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCT---TSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhCCCCCCccCC---CCCcccccccc-ccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            678888875 789999986   45577887764 43   34889999999999999999999999999999999999 67


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++.+|.+|+||||+|++.|+.+++++|+ .|++    ++.+|.+|+||||+|++.|+.+++
T Consensus        91 ~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~----~~~~d~~G~TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_          91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD----LHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC----TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             ccccccccCCCCeeecccccccccccccccc-cccc----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            8899999999999999999999999999887 5777    899999999999999999998877

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-22  Score=160.42  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=100.8

Q ss_pred             CcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCC
Q 016455           24 SKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  100 (389)
                      +++.|+.|+..|..+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++|+ +.+++++.+|.+|+||||+|+.+|+
T Consensus         1 pl~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhH
Confidence            356788898888765   889999999999999999999999999999999999 6789999999999999999999999


Q ss_pred             hHHHHHHHccCCccccccccccc-CCcccchhc--cccCCCccc
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDN-GGNTLLHMT--GIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~-~G~TpLh~A--~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|. +|+||++++  +++|+.+++
T Consensus        80 ~~~v~~Ll~~ga~----v~~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          80 VQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHHcChHHHH
Confidence            9999999999998    887774 588887665  567777777

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.7e-23  Score=163.54  Aligned_cols=111  Identities=11%  Similarity=0.099  Sum_probs=101.0

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCC-hHHHHHHHhCC
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR-NILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~~  100 (389)
                      ..+||.|+..|..+   .|+++|+|+|.+|.+|.||+|+|+ .|+.+++++|+ +.|++++.+|..|. ||||+|+++|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccccc
Confidence            35689998888766   889999999999999999999774 79999999999 78999999998876 69999999999


Q ss_pred             hHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          101 LEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+++|+.+++
T Consensus        82 ~~~v~~Ll~~ga~----~~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          82 LDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             HHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccc----cccccCCCCCHHHHHHHcCCHHHH
Confidence            9999999999998    999999999999999999998877

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=2.1e-22  Score=182.25  Aligned_cols=182  Identities=15%  Similarity=0.133  Sum_probs=126.8

Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---h--------HhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHH
Q 016455            3 LARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---S--------VDQKGIGESSANDNAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~--------Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~   71 (389)
                      +++.|.+.+++  ..|.  ..+.||||+|+..|..+   .        ++++|+|+|.+|.+|+||||+|+..|+.++++
T Consensus        16 ~~~~l~~~~~n--~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~   91 (277)
T d2fo1e1          16 ITEPITRESVN--IIDP--RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA   91 (277)
T ss_dssp             CCSCCSTTTTT--TCCC--SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcCCC--cCCC--CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccc
Confidence            34455566655  4443  24678899999888665   3        36789999999999999999999999999999


Q ss_pred             HHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc--------------------------------------
Q 016455           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP--------------------------------------  113 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~--------------------------------------  113 (389)
                      +|+ +.|++++.+|.+|+||||+|+..++.++++++...+..                                      
T Consensus        92 ~Ll-~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          92 YLM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccc-ccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            999 78999999999999999999999998888877543210                                      


Q ss_pred             -----ccccccccccCCcccchhccccCCCccccc--------------CCChhHHhhHHHHHHHHHHhhcch-hhhhhc
Q 016455          114 -----MRRLVRKIDNGGNTLLHMTGIKRSDYVPEK--------------MEGPALVLQEELLWYERVEEVSIP-HFRNHR  173 (389)
Q Consensus       114 -----~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~--------------l~~~~l~l~~~~~~~~~v~~~~~~-~~~~~~  173 (389)
                           .....+..+.+|.||||+++..++.+..+.              .+...++........+.++.+... ..++.+
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence                 001223455677888888877666544311              112234433333333333333221 125788


Q ss_pred             cCCCCChHHHHhhhhh
Q 016455          174 NNMGFTPEELFATANN  189 (389)
Q Consensus       174 n~~g~Tpl~la~~~~~  189 (389)
                      |.+|+||+|+|.+.+.
T Consensus       251 d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         251 DATDHTARQLAQANNH  266 (277)
T ss_dssp             CSSSCCHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCC
Confidence            9999999999998764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.2e-21  Score=175.47  Aligned_cols=132  Identities=16%  Similarity=0.151  Sum_probs=111.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhh------------------------------------
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQ------------------------------------   42 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~------------------------------------   42 (389)
                      |++++|+++|+++|.+|.+   +.+|+|.|+..+..+   .|++                                    
T Consensus        59 ~iv~~Ll~~ga~i~~~d~~---g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
T d1oy3d_          59 STVEKLYAAGAGVLVAERG---GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN  135 (255)
T ss_dssp             HHHHHHHHTTCCSSCCCTT---SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------
T ss_pred             ccccccccccccccccccc---cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcc
Confidence            7899999999999999974   457788888766543   2221                                    


Q ss_pred             -----------cCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCcc-ccccCCChHHHHHHHhCChHHHHHHHcc
Q 016455           43 -----------KGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVE-HIDDEGRNILHVAIKYRQLEIFELVVQM  110 (389)
Q Consensus        43 -----------~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  110 (389)
                                 .+.+++.+|.+|.||||+|++.|+.++++.|++. +.+.+ ..+..|+||||+|++.|+.+++++|+++
T Consensus       136 ~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             --------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHC
Confidence                       2444567788999999999999999999999954 55554 4678899999999999999999999999


Q ss_pred             CCcccccccccccCCcccchhccccCCCccc
Q 016455          111 EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       111 g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |++    ++.+|.+|+||||+|++.++.+++
T Consensus       215 gad----in~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         215 GAD----PTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             TCC----TTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             CCC----CCCCCCCCCCHHHHHHHCCCHHHH
Confidence            999    999999999999999999998877

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=3.3e-22  Score=173.69  Aligned_cols=161  Identities=16%  Similarity=0.234  Sum_probs=133.3

Q ss_pred             HHHHHHHhCCCCCcc-ccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHH---------
Q 016455            2 ELARFLIRRDTSWEI-TDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIE---------   68 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~-~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~---------   68 (389)
                      |+|++|+++|+|+|. .|.   .+.+|||+|+..|..+   +|+++|+++|.+|..+.++++.++..++.+         
T Consensus         3 ~~v~~Ll~~g~din~~~d~---~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDK---TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCCcCcCcCC---CCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            899999999999997 475   5568899999888765   899999999999999999999888665433         


Q ss_pred             -------------------------HHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc
Q 016455           69 -------------------------IVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN  123 (389)
Q Consensus        69 -------------------------~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~  123 (389)
                                               ..+.|. ..+.+++.+|..|+||||.|+.+++.++++.+++.+.+    ++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~----~~~~d~  154 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN----RDAQDD  154 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCT
T ss_pred             ccccccccccccccccccccccchhhhhhhh-hhcccccccCCCCCCcchhhcccCcceeeeeecccccc----cccccc
Confidence                                     333344 67788899999999999999999999999999999988    899999


Q ss_pred             CCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          124 GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       124 ~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      +|+||||+|+..|+.++++      +++..      .       ..++.+|.+|+||+|+|++.+.
T Consensus       155 ~g~TpL~~A~~~g~~~~v~------~Ll~~------g-------ad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASK------ALLDN------F-------ANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHH------HHHHT------T-------CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccchhccccHHHHHH------HHHHC------C-------CCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999988771      11111      0       1157889999999999998754

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=161.34  Aligned_cols=133  Identities=16%  Similarity=0.243  Sum_probs=120.2

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .|+++.|+++|+|+|.+|.   .+.+|||.|+ .+..+   .|+++|++++.++..|.+|++.++..++.+.++.++ .+
T Consensus        14 ~~~v~~Ll~~g~d~n~~d~---~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~   88 (156)
T d1ihba_          14 LEQLTSLLQNNVNVNAQNG---FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EF   88 (156)
T ss_dssp             HHHHHHHTTSCCCTTCCCT---TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCcCccCC---cccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc-cc
Confidence            3789999999999999997   4567888775 45554   889999999999999999999999999999999999 78


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+++..|..|.+|+|+|+..++.+++++|++++..   +.+.+|.+|+||||+|++.++.+++
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          89 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc---cccccCCCCCCHHHHHHHcCCHHHH
Confidence            889999999999999999999999999999998862   2899999999999999999998776

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.1e-22  Score=173.66  Aligned_cols=162  Identities=20%  Similarity=0.225  Sum_probs=126.2

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHC-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      ++++.+...|+++|.+|.   .+.||||+|+..+..+   .|+++|+|++.+|..|.||||.|+..|+.++++.+++.. 
T Consensus        20 ~li~~~~~~~~~in~~d~---~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~   96 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNN---LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT   96 (221)
T ss_dssp             CCCC-----CCCCCCCCT---TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHhCCCCcccCCC---CCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc
Confidence            456778889999999987   5558899988887655   788999999999999999999999999999999998432 


Q ss_pred             ----CCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccc-cCCcccchhccccCCCcccccCCChhHHhh
Q 016455           78 ----PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        78 ----~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d-~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~  152 (389)
                          ....+....+|+||||.|+..++.++++++++.|..    ++.++ .+|+||||+|++.|+.++++      +++.
T Consensus        97 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~----~~~~~~~~G~T~L~~A~~~g~~~~v~------~Ll~  166 (221)
T d1iknd_          97 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLVS------LLLK  166 (221)
T ss_dssp             TTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHH------HHHT
T ss_pred             cccccccccccccccchhhhHHhhcCChhheeeecccCcc----cccccccCCCCccccccccccHHHHH------HHHh
Confidence                122344556789999999999999999999999887    66554 67999999999999987762      1111


Q ss_pred             HHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          153 EELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      .             ...++.+|.+|+||+|+|.+.+.
T Consensus       167 ~-------------gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         167 C-------------GADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             T-------------TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             c-------------CCcccccCCCCCCHHHHHHHCCC
Confidence            1             11257899999999999987643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=2.8e-21  Score=174.83  Aligned_cols=130  Identities=13%  Similarity=0.160  Sum_probs=105.1

Q ss_pred             HHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCCCcCCCCCCcHHHHHHHcCcH--------------
Q 016455            5 RFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGESSANDNAETPLFLATKSGCI--------------   67 (389)
Q Consensus         5 ~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~--------------   67 (389)
                      +.++++|+|||.+|.   .+.||||+|+..+..   ++|+++|+|++.+|.+|.||+|+|+..|+.              
T Consensus        58 ~~~l~~Gadvn~~d~---~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  134 (277)
T d2fo1e1          58 KECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  134 (277)
T ss_dssp             HHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             hHHHHcCCCccccCC---CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccc
Confidence            456788888888886   455677777766654   478888888888887777777776655544              


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHCCCCc
Q 016455           68 ------------------------------------------------------------------EIVKEIFNVYPQAV   81 (389)
Q Consensus        68 ------------------------------------------------------------------~~v~~Ll~~~~~~~   81 (389)
                                                                                        ++++.++...+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~  214 (277)
T d2fo1e1         135 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  214 (277)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             cccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccc
Confidence                                                                              34444444567777


Q ss_pred             cccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           82 EHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +.+|..|+||||+|++.|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            88899999999999999999999999999999    999999999999999999998877

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.4e-21  Score=167.83  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=88.2

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccch
Q 016455           51 NDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh  130 (389)
                      +..+.||++.++..++.++++.|+ ..+.+.+..|..|+||||+|+.+|+.+++++|++.+..   .+|.+|.+|+||||
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~---~in~~d~~g~TpLh  177 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPLF  177 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC---CSCCCCTTSCCHHH
T ss_pred             ccccccccccccccchhhhhhhhh-hhcccccccCCCCCCccchhhhcccccccccccccccc---cccccccccCCchh
Confidence            344555555666666777777777 67778888999999999999999999999999998743   38999999999999


Q ss_pred             hccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          131 MTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       131 ~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      +|++.++.+++      ..++..            ....++.+|++|+||+|+|.+
T Consensus       178 ~A~~~~~~~~v------~~Ll~~------------~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         178 HALAEGHGDAA------VLLVEK------------YGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHHTTCHHHH------HHHHHH------------HCCCSCCCCTTSCCTGGGCSC
T ss_pred             hhcccccHHHH------HHHHHh------------cCCCCCCcCCCCCCHHHHHhh
Confidence            99999987776      111110            001257899999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=7.1e-22  Score=156.48  Aligned_cols=108  Identities=22%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccc
Q 016455           55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~  134 (389)
                      .|||++|+++|+.++++.|+ +.|++++.+|.+|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d----in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT----TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHH-Hhhhccccccccccccccccccccccccccccccccce----eeecccccccchhhhhh
Confidence            48999999999999999999 78999999999999999999999999999999999998    99999999999999999


Q ss_pred             cCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhh
Q 016455          135 KRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       135 ~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~  186 (389)
                      .++.+++      .++++.+             ..++.+|++|+||+|++..
T Consensus        78 ~~~~~~v------~~Ll~~G-------------ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          78 EGHVSCV------KLLLSKG-------------ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTCCHHH------HHHHTTC-------------CCSSSSSSSTCCCCCTCSS
T ss_pred             cCchhhh------hhhhccc-------------ccceeeCCCCCCHHHHHhH
Confidence            9998877      2221111             1157889999999998843

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.4e-21  Score=160.67  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             CCcHHHHHccCCCChh---hHhhcCCCCCcC------CCCCCcHHHHHHHc---CcHHHHHHHHHHCCCCccccccCCCh
Q 016455           23 QSKPKIHRYGANPNAS---SVDQKGIGESSA------NDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRN   90 (389)
Q Consensus        23 ~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~------d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t   90 (389)
                      ..++.++.|...+.+.   .++..|+|++..      +..|+||||+|++.   |+.+++++|+ ++|++++.+|.+|+|
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~T   83 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhcc
Confidence            4456677777777776   445678887644      67799999999974   6789999999 678999999999999


Q ss_pred             HHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           91 ILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        91 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      |||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~i~  130 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCE  130 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccCcc----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999998    999999999999999999988777

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.8e-21  Score=156.81  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++||++|++++ .|.   .+.+|||+|+..+..+   .+.......+..+..+.+++|.++...+.+.++.++ ..+
T Consensus        16 ~~v~~LL~~ga~~~-~~~---~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~   90 (153)
T d1awcb_          16 DEVRILMANGAPFT-TDW---LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCC-CCT---TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTT
T ss_pred             HHHHHHHHcCCCcc-ccc---CCCccccccccccccccccccccccccccccccccccccccccccccceeeeccc-ccC
Confidence            78999999999987 454   5567899998877766   556666777777888999999999999999999998 788


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      .+.+.+|.+|+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+.+|+.+++
T Consensus        91 ~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CccccccccCchHHHhhhhcchhheeeeccccccC----CcccCCCCCCHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999999    999999999999999999998876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.8e-21  Score=157.33  Aligned_cols=140  Identities=20%  Similarity=0.239  Sum_probs=120.2

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      .+||.|+..|.++   .|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+ +.+++++.++.+|.++++.++.+++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccc
Confidence            5799999888776   889999999999999999999886 79999999999 788999999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      .++.+++.+.+    ++..|..|.+|||+|++.++.+++      ...++.            .....+.+|++|+||+|
T Consensus        81 ~~~~l~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~------~~Ll~~------------~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          81 TLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVV------EFLVKH------------TASNVGHRNHKGDTACD  138 (156)
T ss_dssp             HHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHH------------SCCCTTCCCTTSCCHHH
T ss_pred             ccccccccccc----cccccccccccccccccccccccc------cccccc------------ccccccccCCCCCCHHH
Confidence            99999999988    899999999999999999887665      111110            01124788999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|.+.+.
T Consensus       139 ~A~~~~~  145 (156)
T d1ihba_         139 LARLYGR  145 (156)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.8e-21  Score=179.49  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             hCCCCCccc-cccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcH---HHHHHHHHHCCCCc
Q 016455            9 RRDTSWEIT-DSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCI---EIVKEIFNVYPQAV   81 (389)
Q Consensus         9 ~~ga~vn~~-d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~   81 (389)
                      ..+.|+|.. |.   .+.+|||+|+..|..+   +|+++|+|++.+|..|+||||.|+..++.   +.++.+++....++
T Consensus        94 ~~~~dvn~~~D~---~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~  170 (301)
T d1sw6a_          94 NTQLNLNIPVDE---HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  170 (301)
T ss_dssp             TSCCCSCSCCST---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             ccCCCcCcCcCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh
Confidence            457788865 64   4557899999888765   88999999999999999999999987752   22233333334567


Q ss_pred             cccccCCChHHHHHHHhCCh----H--------HHHHHHccCCc---------------------------------ccc
Q 016455           82 EHIDDEGRNILHVAIKYRQL----E--------IFELVVQMEVP---------------------------------MRR  116 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~~~----~--------iv~~Ll~~g~~---------------------------------~~~  116 (389)
                      +.+|..|+||||+++..+..    .        +++.+.+.+..                                 ...
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            88899999999999875542    2        23333333221                                 011


Q ss_pred             cccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHh
Q 016455          117 LVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFA  185 (389)
Q Consensus       117 ~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~  185 (389)
                      .+|.+|.+|+||||+|++.|+.+++      .++++.+.             .++.+|++|+||+|+|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv------~~Ll~~GA-------------d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIV------DALLDYGA-------------DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHH------HHHHHTTC-------------CTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHH------HHHHHCCC-------------CCCCCCCCCCCHHHHcC
Confidence            3688999999999999999998887      22222111             15889999999999885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=2e-20  Score=162.20  Aligned_cols=132  Identities=13%  Similarity=0.083  Sum_probs=114.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCC-------------------------------------CChhhHhhcC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGAN-------------------------------------PNASSVDQKG   44 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~-------------------------------------~~~~~Ll~~g   44 (389)
                      |++++|+++|+++|..+..+.+.   ++.+...                                     ...+.|.+.|
T Consensus        37 e~v~~Ll~~g~~~n~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  113 (209)
T d1ot8a_          37 DAAKRLLDAGADANSQDNTGRTP---LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD  113 (209)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTT
T ss_pred             HHHHHHHhhcccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence            78999999999999888654432   2211111                                     1112577789


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccC
Q 016455           45 IGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNG  124 (389)
Q Consensus        45 a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~  124 (389)
                      ++++.+|..|.||||.++..|..++++.++ ..+.+++..|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+
T Consensus       114 ~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~-~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----~n~~d~~  188 (209)
T d1ot8a_         114 ADINAADNSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN----REITDHM  188 (209)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTT
T ss_pred             ccccccCCCCCCcchhhcccCcceeeeeec-cccccccccccccccccchhccccHHHHHHHHHHCCCC----CCCcCCC
Confidence            999999999999999999999999999999 77889999999999999999999999999999999999    9999999


Q ss_pred             CcccchhccccCCCccc
Q 016455          125 GNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       125 G~TpLh~A~~~~~~~~~  141 (389)
                      |+||||+|+++|+.+++
T Consensus       189 g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         189 DRLPRDVASERLHHDIV  205 (209)
T ss_dssp             SCCHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHcCCHHHH
Confidence            99999999999998877

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-20  Score=156.87  Aligned_cols=137  Identities=18%  Similarity=0.192  Sum_probs=116.7

Q ss_pred             HHHHccCCCChh---hHh-hcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           27 KIHRYGANPNAS---SVD-QKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        27 ~lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      .||.|+..|.++   .|+ +.|+++|.+|..|+||||+|+ .|+.+++++|+ ..+.+++..+.+|.+|++.++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccc-ccccccccccccccccccccccccccc
Confidence            388888888776   445 468999999999999999986 58899999999 778899999999999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      +++.++++|++    +|.+|.+|+||||+|++.++.++++      +++       +       ...++.+|.+|+||+|
T Consensus        83 ~~~~~l~~~~~----~n~~~~~~~t~L~~A~~~~~~~i~~------~L~-------~-------~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          83 TLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVS------FLA-------A-------ESDLHRRDARGLTPLE  138 (156)
T ss_dssp             HHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHH------HHH-------T-------TSCTTCCCTTSCCHHH
T ss_pred             ccccccccccc----cccccCCCCeeeccccccccccccc------ccc-------c-------cccccccCCCCCCHHH
Confidence            99999999998    9999999999999999999877661      110       0       1125788999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|.+.+.
T Consensus       139 ~A~~~g~  145 (156)
T d1bd8a_         139 LALQRGA  145 (156)
T ss_dssp             HHHHSCC
T ss_pred             HHHHcCC
Confidence            9987654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.6e-20  Score=175.95  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=128.7

Q ss_pred             HHHHHHHhCCCCCccccccCCC------------------------------CcHHHHHccCCCChh---hHhhcCCCCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQ------------------------------SKPKIHRYGANPNAS---SVDQKGIGES   48 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~------------------------------~~~~lh~a~~~~~~~---~Ll~~ga~~n   48 (389)
                      +++++|+++|+++|..+..+.+                              +.+++|.|+..+..+   .+.+.+.+.+
T Consensus       179 ~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  258 (408)
T d1n11a_         179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN  258 (408)
T ss_dssp             HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc
Confidence            5788999999998877654332                              122344444333332   5556677888


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           49 SANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                      ..|..|.||+|.|++.++.+++++|+ +.|++++..+..+.||||.|+..++.++++++++.|++    +|.+|.+|+||
T Consensus       259 ~~~~~g~~~l~~a~~~~~~~i~~~Ll-~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~----in~~d~~G~T~  333 (408)
T d1n11a_         259 LGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSP  333 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC----TTCCCTTSCCH
T ss_pred             cccCCCCChhhhhhhcCcHHHHHHHH-HCCCccccccccccccchhhcccCcceeeeeecccccc----ccccCCCCCCH
Confidence            88889999999999999999999999 67889999999999999999999999999999999988    99999999999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                      ||+|++.|+.+++      .+++..+.             .++.+|++|+||+|+|.+.+.
T Consensus       334 Lh~A~~~g~~~iv------~~Ll~~GA-------------d~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         334 LHQAAQQGHTDIV------TLLLKNGA-------------SPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHTTCHHHH------HHHHHTTC-------------CSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHH------HHHHHCCC-------------CCCCCCCCCCCHHHHHHHcCC
Confidence            9999999988776      22221111             157899999999999988744

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.8e-20  Score=151.46  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=118.3

Q ss_pred             HHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChH
Q 016455           26 PKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  102 (389)
                      +|||.|+..|..+   .|+++|++++ .|..|+||||+|+..++.++++.++ ..+...+..+..+.+++|.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccc-cccccccccccccccccccccccccce
Confidence            6789898887765   8999999987 6899999999999999999999998 666667778889999999999999999


Q ss_pred             HHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHH
Q 016455          103 IFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~  182 (389)
                      +++++.+.+++    .+.+|.+|+||||+|+..++.+++      .+.+..      .       ..++.+|++|+||+|
T Consensus        82 ~~~~l~~~~~~----~~~~~~~g~T~L~~A~~~g~~~iv------~~ll~~------g-------ad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          82 IVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVV------ELLIKY------G-------ADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHH------HHHHHT------T-------CCTTCCCTTSCCHHH
T ss_pred             eeecccccCCc----cccccccCchHHHhhhhcchhhee------eecccc------c-------cCCcccCCCCCCHHH
Confidence            99999999988    899999999999999999987776      111111      0       115778999999999


Q ss_pred             HHhhhhh
Q 016455          183 LFATANN  189 (389)
Q Consensus       183 la~~~~~  189 (389)
                      +|++.+.
T Consensus       139 ~A~~~g~  145 (153)
T d1awcb_         139 ISIDNGN  145 (153)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9997654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=145.39  Aligned_cols=103  Identities=15%  Similarity=0.149  Sum_probs=90.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCC---hhhHhhcCCCCCcCCCCCC-cHHHHHHHcCcHHHHHHHHHHC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPN---ASSVDQKGIGESSANDNAE-TPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~---~~~Ll~~ga~~n~~d~~G~-tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|+|+|.+|.++   .+++|.+. .+.   +++|+++|+++|.+|..|. ||||+|++.|+.+++++|+ +.
T Consensus        17 ~~v~~Ll~~gad~n~~~~~g---~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll-~~   91 (125)
T d1bi7b_          17 EEVRALLEAGANPNAPNSYG---RRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA   91 (125)
T ss_dssp             HHHHHHHTTTCCTTCCCSSS---CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HH
T ss_pred             HHHHHHHHcCCccccccccc---cccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            78999999999999999744   45566543 454   4489999999999998876 6999999999999999999 56


Q ss_pred             CCCccccccCCChHHHHHHHhCChHHHHHHHc
Q 016455           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ  109 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  109 (389)
                      |++++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        92 ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          92 GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            89999999999999999999999999999975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.2e-20  Score=176.20  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=119.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.+++.+.+.+..+..   +.+++|.++..+..+   +|+++|++++..+..+.||||.++..++.++++.++ ..|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~---g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll-~~g  320 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKS---GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQ  320 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTT---CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-HTT
T ss_pred             hHhhhhhccccccccccCC---CCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeec-ccc
Confidence            5678889999998888864   446677776666544   889999999999999999999999999999999999 789


Q ss_pred             CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd----~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999    999999999999999999998776

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.3e-20  Score=159.00  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=108.5

Q ss_pred             hCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC-------
Q 016455            9 RRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP-------   78 (389)
Q Consensus         9 ~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-------   78 (389)
                      +.|+++|..|.+   +.+|||.|+..+..+   .|+++|++.+..+..|.++++.|...++.++++.+.....       
T Consensus        28 ~~g~~in~~d~~---g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  104 (228)
T d1k1aa_          28 QGGRELDIYNNL---RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE  104 (228)
T ss_dssp             HTTCCSCCCCTT---SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred             HCCCCCCccCCC---CCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccc
Confidence            577777777753   345677776666544   6777777777777777777777777776666655543210       


Q ss_pred             ------------------------------CCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCccc
Q 016455           79 ------------------------------QAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        79 ------------------------------~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~Tp  128 (389)
                                                    ......+..|.++||.|+..+..++++.+++.|.+    .+.+|.+|+||
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~  180 (228)
T d1k1aa_         105 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSA  180 (228)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBH
T ss_pred             ccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcch
Confidence                                          11122334678889999999999999999988877    88999999999


Q ss_pred             chhccccCCCcccccCCChhHHhhHHHHHHHHHHhhcchhhhhhccCCCCChHHHHhhhh
Q 016455          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSIPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       129 Lh~A~~~~~~~~~~~l~~~~l~l~~~~~~~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~  188 (389)
                      ||+|++.|+.+++      .++++.+             ..++.+|.+|+||+|+|.+++
T Consensus       181 L~~A~~~g~~~~v------~~Ll~~G-------------ad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         181 LHSASGRGLLPLV------RTLVRSG-------------ADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHHTCHHHH------HHHHHTT-------------CCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHcCCHHHH------HHHHHCC-------------CCCCCCCCCCCCHHHHHHhCC
Confidence            9999999887766      1111111             115788999999999998654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-19  Score=153.27  Aligned_cols=132  Identities=15%  Similarity=0.148  Sum_probs=106.3

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh----------------------------------------hHh
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS----------------------------------------SVD   41 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~----------------------------------------~Ll   41 (389)
                      |++++|+++|+++|..+..+...   ++.+...+..+                                        .|.
T Consensus        54 ~iv~~Ll~~ga~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  130 (228)
T d1k1aa_          54 SVVRLLVTAGASPMALDRHGQTA---AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL  130 (228)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccc---cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhh
Confidence            78999999999999888754433   33222221111                                        223


Q ss_pred             hcCCCC-CcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCcccccccc
Q 016455           42 QKGIGE-SSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRK  120 (389)
Q Consensus        42 ~~ga~~-n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~  120 (389)
                      ....+. ...+..|.+|+|.|+..+..++++.++ ..+.+.+.+|..|+||||+|+.+|+.+++++|+++|++    +|.
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad----~n~  205 (228)
T d1k1aa_         131 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSL  205 (228)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTC
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhh-hhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCC
Confidence            334443 344567999999999999999999999 78899999999999999999999999999999999999    999


Q ss_pred             cccCCcccchhccccCCCccc
Q 016455          121 IDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       121 ~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      +|.+|+||||+|+++++.+++
T Consensus       206 ~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         206 KNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             CCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCHHHHHHhCCCcccc
Confidence            999999999999998876654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.7e-19  Score=159.13  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=115.0

Q ss_pred             CHHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCc----------------------------
Q 016455            1 MELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESS----------------------------   49 (389)
Q Consensus         1 ~e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~----------------------------   49 (389)
                      +|++++|+++|+|+|.++.  ..+.+|||+|+..+..+   .|++.|.+.+.                            
T Consensus        18 ~e~vk~Ll~~G~din~~~~--~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          18 VDLVQQLLEGGANVNFQEE--EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCcCccCC--CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            3789999999999997764  35678899888877644   44443332211                            


Q ss_pred             ------------------------------------------------CCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCc
Q 016455           50 ------------------------------------------------ANDNAETPLFLATKSGCIEIVKEIFNVYPQAV   81 (389)
Q Consensus        50 ------------------------------------------------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   81 (389)
                                                                      .+..|.||||+|+++|+.++++.|++..++++
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence                                                            12346777777777777777777776667777


Q ss_pred             cccccCCChHHHHHHHhC----ChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccccCCChhHHhhHHHHH
Q 016455           82 EHIDDEGRNILHVAIKYR----QLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~~----~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~l~l~~~~~~  157 (389)
                      +..|..|.++.+.+...+    ..+++++|+++|++    ++.+|.+|+||||.|++.++.++++      +.+.     
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~----~n~~~~~g~t~L~~a~~~~~~~~v~------~lL~-----  240 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVRGERGKTPLILAVEKKHLGLVQ------RLLE-----  240 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCCCTTSCCHHHHHHHTTCHHHHH------HHHH-----
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCC----CCccCCCCCCccchhhhcCcHHHHH------HHHH-----
Confidence            777777777766655433    24577777777777    7888999999999999988866551      1110     


Q ss_pred             HHHHHhhcchhhhhhccCCCCChHHHHhhhhh
Q 016455          158 YERVEEVSIPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~~g~Tpl~la~~~~~  189 (389)
                             .....++.+|.+|.||+|+|++.+.
T Consensus       241 -------~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         241 -------QEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             -------SSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -------cCCCCCcCCCCCCCCHHHHHHHcCC
Confidence                   0111267889999999999998653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.6e-19  Score=158.48  Aligned_cols=118  Identities=15%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             HHHHHHHhC-CCCCccccccCCCCcHHHHHccCCCCh----hhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRR-DTSWEITDSFQDQSKPKIHRYGANPNA----SSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~-ga~vn~~d~~~~~~~~~lh~a~~~~~~----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++ |+++|..+..+.........++..+..    +.|+++|++++.+|.+|.||||+|++.|+.+++++|++.
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            678899964 899999998776666666666666544    378999999999999999999999999999999999977


Q ss_pred             CCCCccccccCCChHHHHHHHhCChHHHHHHHccCCccccccccccc
Q 016455           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDN  123 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~  123 (389)
                      +|.+++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence            8999999999999999999999999999999999999    998874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.2e-19  Score=154.13  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=111.1

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCCh---hhHhhcCCCC------CcCCCCCCcHHHHHHHcCcHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNA---SSVDQKGIGE------SSANDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~---~~Ll~~ga~~------n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|+|++..|..   +.+|+|.++..+..   +.|++.+.+.      +....+|.||||.|+..|+.++++.
T Consensus        53 ~iv~~L~~~g~d~~~~d~~---g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          53 EIAEALLGAGCDPELRDFR---GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             HHHHCCCSCCCCSCCCCTT---CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccccc---cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheee
Confidence            6889999999999999874   44678877766654   4677766554      2345678999999999999999999


Q ss_pred             HHHHCCCCcccc-ccCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455           73 IFNVYPQAVEHI-DDEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++ ..+..++.. +.+|+||||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus       130 l~-~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         130 LV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ec-ccCcccccccccCCCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHH
Confidence            99 556666655 46899999999999999999999999999    999999999999999999887766

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.8e-18  Score=150.61  Aligned_cols=130  Identities=18%  Similarity=0.199  Sum_probs=110.9

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh--------------------------------------hHhhc
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS--------------------------------------SVDQK   43 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~--------------------------------------~Ll~~   43 (389)
                      |++++|+++|+++|..+..+..+.+++|.+...+..+                                      .|++.
T Consensus        48 ~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          48 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             HHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            7899999999999877766666666666444332211                                      46678


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCChHHHHHHHc-cCCcccccccccc
Q 016455           44 GIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQ-MEVPMRRLVRKID  122 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d  122 (389)
                      |.+.+.+|.+|+||||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+++|+.+++++|++ .|++    ++.+|
T Consensus       128 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad----~~~~d  203 (229)
T d1ixva_         128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVD  203 (229)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCCC
T ss_pred             cccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC----CCCcC
Confidence            888889999999999999999999999999966668899999999999999999999999999996 5898    99999


Q ss_pred             cCCcccchhcccc
Q 016455          123 NGGNTLLHMTGIK  135 (389)
Q Consensus       123 ~~G~TpLh~A~~~  135 (389)
                      .+|+||||+|+..
T Consensus       204 ~~g~t~l~~A~~~  216 (229)
T d1ixva_         204 NKGAKAEDVALNE  216 (229)
T ss_dssp             TTSCCTGGGCSCH
T ss_pred             CCCCCHHHHHhhH
Confidence            9999999999853

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=4e-18  Score=140.89  Aligned_cols=110  Identities=12%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             HHHHHHhCCCCCccccc---cCCCCcHHHHHccC---CCC---hhhHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHH
Q 016455            3 LARFLIRRDTSWEITDS---FQDQSKPKIHRYGA---NPN---ASSVDQKGIGESSANDNAETPLFLATKSGCIEIVKEI   73 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d~---~~~~~~~~lh~a~~---~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~L   73 (389)
                      .+..++..|+|++....   ....+.+|||.|+.   .+.   +++|+++|+|+|.+|.+|+||||+|+..|+.+++++|
T Consensus        21 ~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          21 GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            45667788988775521   12356788998874   343   4589999999999999999999999999999999999


Q ss_pred             HHHCCCCccccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      + +.|++++.+|.+|+||||+|+++|+.+++++|++.++.
T Consensus       101 l-~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 L-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             H-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             c-ccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9 78999999999999999999999999999999987654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1e-18  Score=160.76  Aligned_cols=125  Identities=10%  Similarity=0.076  Sum_probs=97.7

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCC------ChhhHhh-cCCCCCcCCCCCCcHHHHHHHcCc----HHH-
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANP------NASSVDQ-KGIGESSANDNAETPLFLATKSGC----IEI-   69 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~------~~~~Ll~-~ga~~n~~d~~G~tpLh~Aa~~g~----~~~-   69 (389)
                      |++++|+++|+|++.+|.   .+.+|||.|+..+      .++.+++ .+.+++.+|..|+||||+++..+.    ... 
T Consensus       121 ~~v~~Ll~~gad~~~~d~---~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~  197 (301)
T d1sw6a_         121 ELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA  197 (301)
T ss_dssp             HHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHCCCCCCcCCc---ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHH
Confidence            789999999999999997   4557888887644      3333433 245567889999999999886543    222 


Q ss_pred             -------HHHHHHHCCC------------------------------------CccccccCCChHHHHHHHhCChHHHHH
Q 016455           70 -------VKEIFNVYPQ------------------------------------AVEHIDDEGRNILHVAIKYRQLEIFEL  106 (389)
Q Consensus        70 -------v~~Ll~~~~~------------------------------------~~~~~d~~G~t~Lh~A~~~~~~~iv~~  106 (389)
                             ++.+++....                                    .+|.+|.+|+||||+|+++|+.+++++
T Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~  277 (301)
T d1sw6a_         198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA  277 (301)
T ss_dssp             HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                   2333322111                                    168889999999999999999999999


Q ss_pred             HHccCCcccccccccccCCcccchhcc
Q 016455          107 VVQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus       107 Ll~~g~~~~~~~~~~d~~G~TpLh~A~  133 (389)
                      |+++|++    ++.+|++|.||||+|+
T Consensus       278 Ll~~GAd----~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         278 LLDYGAD----PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTCC----TTCCCTTSCCGGGGTC
T ss_pred             HHHCCCC----CCCCCCCCCCHHHHcC
Confidence            9999999    9999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=3.7e-18  Score=155.37  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=103.1

Q ss_pred             cHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCCCCccccccCCChHHHHHHHhCCh
Q 016455           25 KPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        25 ~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  101 (389)
                      .++||.|+..|+++   .|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+ +.+.+.+..+..+.+|||.|+..++.
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll-~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeec-cccccccccccccccccccccccccc
Confidence            47799999888776   889999999999999999999999999999999999 77888889999999999999999999


Q ss_pred             HHHHHHHccCCcccccccccccCCcccchhccccCCCccc
Q 016455          102 EIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       102 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~  141 (389)
                      ++++.|++.|+.    .+.+|.+|.+|+++|+..++.+..
T Consensus       120 ~~~~~l~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~  155 (291)
T d1s70b_         120 DIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELL  155 (291)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             chhhcccccCcc----cccccccCccccccccccccchhc
Confidence            999999999988    889999999999999987776554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-18  Score=139.99  Aligned_cols=106  Identities=12%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHHHCC
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSANDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |+++.|+++|+|+|.+|.   .+.+|||.|+..+..+   .|+++|+++|.+|.+|+||||+|+.+|+.+++++|+ ++|
T Consensus        15 ~~v~~Ll~~g~d~n~~d~---~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g   90 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPND---EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESG   90 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCT---TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCcccccc---ccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH-HcC
Confidence            789999999999999997   4557888888777654   889999999999999999999999999999999999 789


Q ss_pred             CCcccccc-CCChHHHHH--HHhCChHHHHHHHccC
Q 016455           79 QAVEHIDD-EGRNILHVA--IKYRQLEIFELVVQME  111 (389)
Q Consensus        79 ~~~~~~d~-~G~t~Lh~A--~~~~~~~iv~~Ll~~g  111 (389)
                      ++++.++. +|+|+++++  +++|+.+++++|++.+
T Consensus        91 a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          91 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99998775 588887765  5778999999998753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.72  E-value=6.7e-20  Score=172.23  Aligned_cols=138  Identities=7%  Similarity=-0.016  Sum_probs=107.1

Q ss_pred             HHHHHHhCCCCCcccc--------ccCCCCcHHHHHccCCCChh------hHhhcCCCCCcCCCCCCcHHHHHHHcCcHH
Q 016455            3 LARFLIRRDTSWEITD--------SFQDQSKPKIHRYGANPNAS------SVDQKGIGESSANDNAETPLFLATKSGCIE   68 (389)
Q Consensus         3 ~v~~Ll~~ga~vn~~d--------~~~~~~~~~lh~a~~~~~~~------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~   68 (389)
                      +.+.|...+++.+..+        ..+..+.++||.|+..|+.+      .|+++|+++|.+|.+|+||||+||++|+.+
T Consensus        61 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~  140 (346)
T d2ajaa1          61 VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH  140 (346)
T ss_dssp             HHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHH
Confidence            4455555554444332        12235678899999998753      478899999999999999999999999999


Q ss_pred             HHHHHHHHCCCCccccc--cCCChHHHHHHHhCChHHHHHHHccCCcccccccccccCCcccchhccccCCCcccc
Q 016455           69 IVKEIFNVYPQAVEHID--DEGRNILHVAIKYRQLEIFELVVQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        69 ~v~~Ll~~~~~~~~~~d--~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~  142 (389)
                      +|++|+ +.|++++..|  .+|+||||+|+++|+.+++++|++.|++ ....+..+.+|.||+|.|+.+|+.++++
T Consensus       141 ~v~~Ll-~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         141 VLNRLC-ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHHHHH-HSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHH-HcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCHHHHHH
Confidence            999999 7788888776  4699999999999999999999999875 1223556677889999999999998884

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.68  E-value=5.7e-19  Score=165.78  Aligned_cols=108  Identities=9%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             HHHHHHHhCCCCCccccccCCCCcHHHHHccCCCChh---hHhhcCCCCCcCC--CCCCcHHHHHHHcCcHHHHHHHHHH
Q 016455            2 ELARFLIRRDTSWEITDSFQDQSKPKIHRYGANPNAS---SVDQKGIGESSAN--DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 e~v~~Ll~~ga~vn~~d~~~~~~~~~lh~a~~~~~~~---~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |+++.|++.|+++|..|.   .+.+|||.|+..|+.+   +|+++|++++..|  .+|.||||+|+++|+.+++++|+ +
T Consensus       107 ~~~~~L~~~~~~in~~~~---~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll-~  182 (346)
T d2ajaa1         107 DTLCLLLTSDEIVKVIQA---ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC-E  182 (346)
T ss_dssp             HHHTTC--CCSSCC--CH---HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHhCCCcccccCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHH-H
Confidence            345568999999999997   5568899999998866   8999999998765  46999999999999999999999 5


Q ss_pred             CCCCc---cccccCCChHHHHHHHhCChHHHHHHHccCCc
Q 016455           77 YPQAV---EHIDDEGRNILHVAIKYRQLEIFELVVQMEVP  113 (389)
Q Consensus        77 ~~~~~---~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~  113 (389)
                      .+.+.   +..+.+|.||+|.|+++|+.+++++|++.|++
T Consensus       183 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            55443   44556778889999999999999999999876