Citrus Sinensis ID: 016480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS
ccccccEEEEEcccccEEEEEEEEEccccccccccccccEEEccccccccEEEcccccccEEEEEccccEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEcccccEEEEccccEEEEEEcccEEEEEcccccccccccccccEEcEEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEcccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEEEccEEcc
cccccEEEEEEEccEEEEEEccccccccccccccccccccHccccccccccEHHHHccEEEEEEEccccEEEEEEEccccEEEEEcccccccccccccccccccEEEEccccEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEHHHHcccEEEEEEEccccccc
madryrlfsieelpSHLIFEILTSGRLSAVDLAHLELtsktfggshglypqkFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHssdivetsagnmqitTGRYHTLLisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvytwgkgycgalghgdeidktlpeplsslkSHLAVQVKFIRNFYYS
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaLDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLsslkshlavqVKFIRNFYYS
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS
****YRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYY*
*****RL*SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWK****************ETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS
***RYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNF***
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MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
Q9FN03 440 Ultraviolet-B receptor UV no no 0.668 0.590 0.318 8e-25
Q15034 1050 Probable E3 ubiquitin-pro yes no 0.658 0.243 0.296 2e-24
Q15751 4861 Probable E3 ubiquitin-pro no no 0.591 0.047 0.320 3e-24
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.668 0.052 0.317 8e-23
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.650 0.052 0.316 2e-21
O95714 4834 E3 ubiquitin-protein liga no no 0.650 0.052 0.316 2e-21
Q5RCZ7 551 RCC1 and BTB domain-conta no no 0.632 0.446 0.296 4e-21
O95199 551 RCC1 and BTB domain-conta no no 0.632 0.446 0.296 4e-21
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.678 0.249 0.306 6e-21
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.678 0.249 0.310 7e-21
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)

Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 20  ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 78

Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 79  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 196

Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 197 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 254

Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
            LGHGD  D  +P  L +L +    Q+
Sbjct: 255 QLGHGDLEDHLIPHKLEALSNSFISQI 281
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
255575340 497 Ran GTPase binding protein, putative [Ri 0.922 0.722 0.831 0.0
224114984478 predicted protein [Populus trichocarpa] 0.951 0.774 0.813 1e-180
147820281 511 hypothetical protein VITISV_023540 [Viti 0.966 0.735 0.810 1e-179
225461391 492 PREDICTED: probable E3 ubiquitin-protein 0.966 0.764 0.810 1e-179
224128193 492 predicted protein [Populus trichocarpa] 0.915 0.723 0.807 1e-179
356549747485 PREDICTED: probable E3 ubiquitin-protein 0.969 0.777 0.792 1e-174
255646519485 unknown [Glycine max] 0.969 0.777 0.789 1e-173
356544020485 PREDICTED: probable E3 ubiquitin-protein 0.969 0.777 0.786 1e-172
297830122488 regulator of chromosome condensation fam 0.946 0.754 0.734 1e-164
449446943 491 PREDICTED: probable E3 ubiquitin-protein 0.946 0.749 0.744 1e-163
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/380 (83%), Positives = 342/380 (90%)

Query: 1   MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
           MAD+YRL SI+ELPSHLI EIL +GRLSA DL  LELTSKTFGGSHGLYP KF+SLVD A
Sbjct: 1   MADKYRLVSIDELPSHLILEILMTGRLSATDLVCLELTSKTFGGSHGLYPHKFKSLVDFA 60

Query: 61  ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
           A QLCA HS+Y GM  N Q ELL+RC GNWKRVLRFL +VE SS +VETSAGNMQITTGR
Sbjct: 61  AFQLCASHSVYTGMLWNAQKELLDRCGGNWKRVLRFLLAVEESSGMVETSAGNMQITTGR 120

Query: 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
           YHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS NHAA++L+
Sbjct: 121 YHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYILE 180

Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
           SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT  GHV++C
Sbjct: 181 SGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYSC 240

Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
           G+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSFGSGSNFC
Sbjct: 241 GTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSFGSGSNFC 300

Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
           LGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+VYTWGKGYCGALGHGDE
Sbjct: 301 LGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTWGKGYCGALGHGDE 360

Query: 361 IDKTLPEPLSSLKSHLAVQV 380
           IDKTLPEPL+SLKSHLAVQV
Sbjct: 361 IDKTLPEPLNSLKSHLAVQV 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|297830122|ref|XP_002882943.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297328783|gb|EFH59202.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449446943|ref|XP_004141229.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.976 0.778 0.736 4.1e-152
TAIR|locus:2092190 532 AT3G26100 [Arabidopsis thalian 0.930 0.680 0.348 2.5e-42
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.668 0.590 0.318 1.5e-28
TAIR|locus:505006603 1075 AT5G12350 "AT5G12350" [Arabido 0.691 0.250 0.329 4e-28
RGD|1306366 1203 Herc1 "HECT and RLD domain con 0.658 0.212 0.312 4.4e-27
UNIPROTKB|F1RW66 1050 HERC3 "Uncharacterized protein 0.668 0.247 0.298 2e-26
RGD|1307803 909 Herc3 "HECT and RLD domain con 0.658 0.281 0.300 2.5e-26
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.658 0.052 0.312 2.5e-26
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.658 0.052 0.312 2.5e-26
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.658 0.052 0.312 2.5e-26
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
 Identities = 280/380 (73%), Positives = 311/380 (81%)

Query:     1 MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
             MADR  L S E+LPSHLI E+LTSGRLSAVDL  LELTSK FGGSHG YP KFRSL D A
Sbjct:     1 MADRNCLISFEDLPSHLILEVLTSGRLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYA 60

Query:    61 ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
             ASQLC++H +Y GM    Q EL   C GNWKR+  FLQSVE SSD+VETS G MQI TG+
Sbjct:    61 ASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGK 120

Query:   121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
             YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++NH+AFVLQ
Sbjct:   121 YHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180

Query:   181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
             SGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+  GH +TC
Sbjct:   181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240

Query:   241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
             GSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSFGSGSNFC
Sbjct:   241 GSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFC 300

Query:   301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360
             LGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G VYTWGKGYCGALGHGDE
Sbjct:   301 LGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDE 360

Query:   361 IDKTLPEPLSSLKSHLAVQV 380
              DK  P+ L +L + LAVQV
Sbjct:   361 NDKITPQVLVNLNNCLAVQV 380
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW66 HERC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307803 Herc3 "HECT and RLD domain containing E3 ubiquitin protein ligase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-20
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-17
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
pfam0064648 pfam00646, F-box, F-box domain 0.002
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.004
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 2e-26
 Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 27/285 (9%)

Query: 94  LRFLQSVEHSSDIVETSAGNMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETT--- 149
           +    S +    +V       ++  G   ++ L ++  V+S G+  CG LG G       
Sbjct: 166 VPGGSSAKSHLRVV-------KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK 218

Query: 150 QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR-----PI 204
             + FT +  P  A +VQ++A  +H   +   G+V+  G N     G   + R      +
Sbjct: 219 TSIQFTPLKVPKKA-IVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLV 277

Query: 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264
             P  +  +K V C     G + +  L   G ++  G N  GQLG G   +     +   
Sbjct: 278 GDPFAIRNIKYVAC-----GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332

Query: 265 LEEVGS---VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
            +++ S   +  I+AG S+ L +  +G +Y+FG G    LG  E+          T    
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS--TPTKLSV 390

Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
            I + +V+ G  H +A    G VY+WG G  G LG+G +    L 
Sbjct: 391 AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLV 435

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.38
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.33
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.24
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.22
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.2
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.14
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.3
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 95.88
smart0025641 FBOX A Receptor for Ubiquitination Targets. 94.8
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.0
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.93
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.46
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.31
KOG0315311 consensus G-protein beta subunit-like protein (con 89.12
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.57
PF13013109 F-box-like_2: F-box-like domain 86.73
KOG0646476 consensus WD40 repeat protein [General function pr 84.93
KOG2997366 consensus F-box protein FBX9 [General function pre 83.05
PHA03098534 kelch-like protein; Provisional 82.94
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 82.78
KOG0315311 consensus G-protein beta subunit-like protein (con 82.5
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.96
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-45  Score=339.22  Aligned_cols=314  Identities=25%  Similarity=0.369  Sum_probs=253.5

Q ss_pred             cceeeccCccccceeeeeecCCccccceee----------------cccccccceeec------CCCcEEEEecCCeeEE
Q 016480           68 HSIYAGMSRNVQIELLNRCNGNWKRVLRFL----------------QSVEHSSDIVET------SAGNMQITTGRYHTLL  125 (389)
Q Consensus        68 ~~~~~~~~~~~~g~l~~~g~~~~~~~~~~~----------------~~~~~~p~~v~~------~~~i~~i~~G~~h~~~  125 (389)
                      +..++ .+...+|.||.||.|..|.+++..                ......|..++.      ..++++++||..++++
T Consensus       112 Gg~hs-l~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svi  190 (476)
T COG5184         112 GGNHS-LGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVI  190 (476)
T ss_pred             CCceE-EeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEE
Confidence            33445 677888999999998888888666                124567777777      4579999999999999


Q ss_pred             E-ECCeEEEEecCCCCccCCCCCCce---eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCC
Q 016480          126 I-SNSSVFSCGSSLCGVLGHGPETTQ---CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN  201 (389)
Q Consensus       126 l-~~g~vy~wG~n~~gqlG~~~~~~~---~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~  201 (389)
                      + ++|+||+||.+..+.++.+.....   ...++|+..+ ...|+++++|.+|.++|+++|++|+||+|..||||.....
T Consensus       191 l~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e  269 (476)
T COG5184         191 LTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSE  269 (476)
T ss_pred             EccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhh
Confidence            9 999999999998888887743332   2346666666 4589999999999999999999999999999999998774


Q ss_pred             CceecCEEeccc-CCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC----CCCCeeecCCCCCCCEEEEEe
Q 016480          202 RPIFRPRLVEAL-KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAA  276 (389)
Q Consensus       202 ~~~~~p~~v~~~-~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~i~~I~~  276 (389)
                      + ...+..+..+ .-..|+.|+||.+|++||+++|+||+||.|.+||||.++...    ...|+....+.. ..|..|++
T Consensus       270 ~-~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~-~~i~~is~  347 (476)
T COG5184         270 R-LKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG-VTICSISA  347 (476)
T ss_pred             h-cccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC-ceEEEEec
Confidence            3 2222233222 222378999999999999999999999999999999983221    234444444433 46999999


Q ss_pred             cCceEEEEECCCcEEEEeCCCCCccCCCC--CCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCC
Q 016480          277 GPSYMLAVTGNGVVYSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA  354 (389)
Q Consensus       277 G~~h~~~lt~~G~vy~wG~n~~gqLG~g~--~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~Gq  354 (389)
                      |..|+++|..+|.||+||+++.+|||...  ......|.++...    .++.+|+||..|+++.+.+|.||+||+|++|+
T Consensus       348 ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~----~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gn  423 (476)
T COG5184         348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA----IKLEQVACGTHHNIARTDDGSVYSWGWGEHGN  423 (476)
T ss_pred             CcceEEEEecCceEEEecCCccccccCcccceeecCCccccccc----cceEEEEecCccceeeccCCceEEecCchhhh
Confidence            99999999999999999999999999988  5555666666543    26999999999999999999999999999999


Q ss_pred             CCCCCC-CCeecceEecC--CCCCcEEEEEEecCeeeC
Q 016480          355 LGHGDE-IDKTLPEPLSS--LKSHLAVQVKFIRNFYYS  389 (389)
Q Consensus       355 LG~g~~-~~~~~P~~v~~--~~~~~i~~i~~G~~~s~~  389 (389)
                      ||.|+. +....|+.+..  +....++..-||.+++.+
T Consensus       424 lG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~  461 (476)
T COG5184         424 LGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVI  461 (476)
T ss_pred             ccCCchhhhccccccccccccCCCceEEeccCcceEEE
Confidence            999985 56778888875  677889999999988864

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-26
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-16
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 6e-06
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-26
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-16
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-06
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-26
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-16
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-06
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-25
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 6e-06
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-22
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 7e-22
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-12
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-12
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-06
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-10
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-09
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-04
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 9   ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 68  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
            LGHGD  D  +P  L +L +    Q+
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQI 270
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-79
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-73
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-72
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-59
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-58
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-40
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-30
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-78
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-73
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-62
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-55
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-12
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-63
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-63
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-62
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 9e-54
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-51
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-07
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-61
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-58
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-53
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-49
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-06
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-58
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-56
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-52
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-50
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-24
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-18
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-16
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-05
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  247 bits (632), Expect = 9e-79
 Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 7/268 (2%)

Query: 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
            I+ G  H++ + S   V S G    G LGHG +     S T+++      +V V+   +
Sbjct: 20  IISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGAD 78

Query: 174 HAAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
           H     QSG +V++ G       GH   +  +F P  ++AL G+  KQ+  G +    +T
Sbjct: 79  HTVAYSQSGMEVYSWGWGDFGRLGH-GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT 137

Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
           + G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y 
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYG 196

Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
           +G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254

Query: 353 GALGHGDEIDKTLPEPLSSLKSHLAVQV 380
           G LGHGD  D  +P  L +L +    Q+
Sbjct: 255 GQLGHGDLEDHLIPHKLEALSNSFISQI 282
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.29
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.06
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.82
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 96.86
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.67
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.51
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.96
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 93.23
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.16
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 93.07
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 91.74
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 90.91
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 89.17
2xyi_A430 Probable histone-binding protein CAF1; transcripti 86.83
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 86.52
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 83.71
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.8e-63  Score=481.49  Aligned_cols=310  Identities=28%  Similarity=0.425  Sum_probs=282.9

Q ss_pred             cCccccceeeeeecCCccccceeecccccccceeecCCC----cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCC
Q 016480           74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET  148 (389)
Q Consensus        74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~----i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~  148 (389)
                      +.+.++|+||.||.+..++++.........|..++.+..    +++|+||..|+++| ++|+||+||.|.+||||.+...
T Consensus        66 ~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~  145 (389)
T 3kci_A           66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS  145 (389)
T ss_dssp             EEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred             EEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc
Confidence            557889999999999999998665555556777666554    47899999999999 9999999999999999999876


Q ss_pred             ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--c
Q 016480          149 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--N  226 (389)
Q Consensus       149 ~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~  226 (389)
                      . ...|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..+.+.+|++|+||.  .
T Consensus       146 ~-~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~~~~~v~~ia~G~g~~  223 (389)
T 3kci_A          146 P-CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVEALQGHRVVDIACGSGDA  223 (389)
T ss_dssp             C-EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECCSSC
T ss_pred             c-CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEecccCCCeEEEEEEcCCCc
Confidence            5 45677777766669999999999999999999999999999999999887 557889999999999999999995  8


Q ss_pred             eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCC
Q 016480          227 FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ  306 (389)
Q Consensus       227 hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~  306 (389)
                      |+++|+++|+||+||.|.+||||.+.......|++++.+.. .+|++|+||.+|++||+++|+||+||.|.+||||++..
T Consensus       224 ~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~  302 (389)
T 3kci_A          224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD  302 (389)
T ss_dssp             EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred             EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence            99999999999999999999999999888899999988866 57999999999999999999999999999999999999


Q ss_pred             CCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCe
Q 016480          307 HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNF  386 (389)
Q Consensus       307 ~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~  386 (389)
                      .....|++|+.+  .+.+|++|+||.+|++||+++|+||+||+|.+||||+|+.+....|++|+.+.+.+|++|+||..|
T Consensus       303 ~~~~~P~~v~~l--~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~h  380 (389)
T 3kci_A          303 DHVRRPRQVQGL--QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAH  380 (389)
T ss_dssp             CCEEEEEECGGG--TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTE
T ss_pred             ccccCCeEeccC--CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCc
Confidence            888899999877  455899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ee
Q 016480          387 YY  388 (389)
Q Consensus       387 s~  388 (389)
                      |+
T Consensus       381 t~  382 (389)
T 3kci_A          381 TL  382 (389)
T ss_dssp             EE
T ss_pred             EE
Confidence            97
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-19
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 7e-10
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 2e-21
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 5/197 (2%)

Query: 148 TTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRP 207
             +CV                         +   G V+  G ++    G   T       
Sbjct: 205 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ 264

Query: 208 RLVEALKGVPC-KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPL 265
            L             + G + T  +   G  ++ G   +G+LG G+   ++  P  I+ L
Sbjct: 265 NLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 324

Query: 266 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325
               +V  +A G S   AVT +G V+++G G+N+ LG G+  D   P  +   + +   V
Sbjct: 325 P---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVV 381

Query: 326 VRVSAGDEHVVALDSSG 342
           + VS+G +H V L    
Sbjct: 382 LSVSSGGQHTVLLVKDK 398
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.21
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.34
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 96.24
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.03
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 95.43
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 89.5
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.35
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-53  Score=408.68  Aligned_cols=310  Identities=22%  Similarity=0.271  Sum_probs=255.8

Q ss_pred             cCccccceeeeeecCCccccceeecc-cccccceeecCCCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCcee
Q 016480           74 MSRNVQIELLNRCNGNWKRVLRFLQS-VEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQC  151 (389)
Q Consensus        74 ~~~~~~g~l~~~g~~~~~~~~~~~~~-~~~~p~~v~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~  151 (389)
                      ....++|+||.||.++.+||+..... ....|.+++...+|++|+||..|++|| ++|+||+||.|.+||||.+.... .
T Consensus         9 ~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~-~   87 (401)
T d1a12a_           9 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE-G   87 (401)
T ss_dssp             TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST-T
T ss_pred             EEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccc-c
Confidence            34577999999999999999866443 356788999999999999999999999 99999999999999999987665 3


Q ss_pred             eeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCccc-----------------------------------
Q 016480          152 VSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG-----------------------------------  196 (389)
Q Consensus       152 ~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG-----------------------------------  196 (389)
                      ..|.+..+....+|++|+||..|+++++++|+||+||.+..++++                                   
T Consensus        88 ~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~  167 (401)
T d1a12a_          88 SEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML  167 (401)
T ss_dssp             GGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEE
T ss_pred             ccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccceeee
Confidence            456666777777999999999999999999999998865443332                                   


Q ss_pred             ------------------CCCCC----------CceecCEEec-----ccCCcceEEEEccCceEEEEeeCCcEEEeeCC
Q 016480          197 ------------------HRDTN----------RPIFRPRLVE-----ALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN  243 (389)
Q Consensus       197 ------------------~~~~~----------~~~~~p~~v~-----~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n  243 (389)
                                        .....          .....|..+.     .....+|++|+||..|+++|+++|+||+||.|
T Consensus       168 ~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n  247 (401)
T d1a12a_         168 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLS  247 (401)
T ss_dssp             ETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECC
T ss_pred             ecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeeccc
Confidence                              21110          0011222222     12235789999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCeeecCCCCC-CCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCC-CCccccEEeeccccC
Q 016480          244 THGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ-HDELQPRAIQTFRRK  321 (389)
Q Consensus       244 ~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~-~~~~~P~~i~~~~~~  321 (389)
                      .++++|.........+..+..+... ..++.|++|..|+++++++|+||+||.|.+||||.+.. .....|++|+.+.  
T Consensus       248 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~--  325 (401)
T d1a12a_         248 NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--  325 (401)
T ss_dssp             TTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--
T ss_pred             ceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCC--
Confidence            9999998887777666666554432 57999999999999999999999999999999999865 4455788887653  


Q ss_pred             CccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecC--CCCCcEEEEEEecCeee
Q 016480          322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS--LKSHLAVQVKFIRNFYY  388 (389)
Q Consensus       322 ~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--~~~~~i~~i~~G~~~s~  388 (389)
                        +|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|++|..  +++.+|++|+||.+||+
T Consensus       326 --~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~  392 (401)
T d1a12a_         326 --AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTV  392 (401)
T ss_dssp             --SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEE
T ss_pred             --CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEE
Confidence              699999999999999999999999999999999999999999999864  56789999999999996
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure