Citrus Sinensis ID: 016505

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEcccHHccccccccccccccHHHHHHHHHcccccccccccEEEEEEcccccEEEEEEEccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcHcccccccccccccccEEEEHHHHHHccccccccHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHccccccccccHHHHHHHHHcccccEEcccEEEEEEccccEEEEEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccHHHcccccccccccccHHHHHHHHHHHHHccccccccHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
mrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqkdrasltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhietTEQADEFAECMIdakiyypsrvdpesveicytdinhlapaayltspIMNFYIRYLQlqasptnrairdchfFNTYFYSKLKEAvshkggdkdsFFIKFRRWWKgvnifqksyvlipihedvHWSLVIICipdkedesgpiilhldslklhcSLSIFSNIRSFLKEEWNYLkqevspsdlpIAERIWQHlprriddriipvpqqkndydcgLFVLFFMERFMEEAPERLKKKDLAMFgkrwfrpeeasGLRIKIRNLLKKQFQissaeccnsksltspggcsp
mrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqKDRASltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhiETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEavshkggdkDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQevspsdlpIAERIWQHLPRRIDDriipvpqqkndyDCGLFVLFFMERFMEEAPERLKKKDLAMFGKrwfrpeeasglrIKIRNLLKKQFQissaeccnsksltspggcsp
MRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
***************************************************************************************************************EFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAEC**************
************************************************************************************************************************KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS***GD**SFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILH*********LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLL*************************
*********************WPFHKGDKSF***************************PKKKESFEVLPSKNPRLRKEQNLVLLD******************IETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNS***********
************************************************************KKESFEVLPSKNP*************************EGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSA****************
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MRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q2PS26584 Ubiquitin-like-specific p yes no 0.762 0.506 0.570 1e-103
Q8RWN0571 Ubiquitin-like-specific p no no 0.729 0.495 0.525 3e-88
Q8L7S0 931 Probable ubiquitin-like-s no no 0.631 0.263 0.287 2e-26
Q0WKV8 774 Probable ubiquitin-like-s no no 0.639 0.320 0.296 4e-25
O13769638 Ubiquitin-like-specific p yes no 0.564 0.343 0.273 7e-21
Q8WP32755 Sentrin-specific protease N/A no 0.448 0.230 0.3 3e-16
Q96HI0755 Sentrin-specific protease yes no 0.448 0.230 0.3 3e-16
Q6NXL6749 Sentrin-specific protease no no 0.448 0.232 0.304 4e-16
Q9HC62589 Sentrin-specific protease no no 0.458 0.302 0.296 1e-15
Q91ZX6588 Sentrin-specific protease no no 0.469 0.309 0.288 2e-15
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function desciption
 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 233/307 (75%), Gaps = 11/307 (3%)

Query: 64  SFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIY 123
           S+E  PS++ R RK+    +++ DE       EE++ S      EQA E  E + +  I 
Sbjct: 285 SWEKSPSQSSRRRKKSEDTVINVDE-------EEAQPST---VAEQAAELPEGLQE-DIC 333

Query: 124 YPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFY 183
           YP+R DP  V++C  D+  LAP  YLTSP+MNFY+R+LQ Q S +N+   DCHFFNTYFY
Sbjct: 334 YPTRDDPHFVQVCLKDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFY 393

Query: 184 SKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDES 243
            KL +AV++KG DKD+FF++FRRWWKG+++F+K+Y+ IPIHED+HWSLVI+CIPDK+DES
Sbjct: 394 KKLSDAVTYKGNDKDAFFVRFRRWWKGIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDES 453

Query: 244 GPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 303
           G  ILHLDSL LH   SI  N++ FLK+EWNYL Q+    DLPI+E++W++LPRRI + +
Sbjct: 454 GLTILHLDSLGLHSRKSIVENVKRFLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAV 513

Query: 304 IPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLL 363
           + VPQQKND+DCG FVLFF++RF+EEAP+RLK+KDL MF K+WFRP+EAS LRIKIRN L
Sbjct: 514 VQVPQQKNDFDCGPFVLFFIKRFIEEAPQRLKRKDLGMFDKKWFRPDEASALRIKIRNTL 573

Query: 364 KKQFQIS 370
            + F++S
Sbjct: 574 IELFRVS 580
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1C.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function description
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2 SV=1 Back     alignment and function description
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3 Back     alignment and function description
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
255568770283 sentrin/sumo-specific protease, putative 0.721 0.989 0.75 1e-124
356524061 594 PREDICTED: LOW QUALITY PROTEIN: ubiquiti 0.860 0.562 0.607 1e-110
356565950 586 PREDICTED: ubiquitin-like-specific prote 0.811 0.537 0.618 1e-105
145336892 584 ubiquitin-like-specific protease 1D [Ara 0.762 0.506 0.570 1e-101
297840529 593 cysteine-type peptidase [Arabidopsis lyr 0.762 0.499 0.570 1e-100
296086553221 unnamed protein product [Vitis vinifera] 0.551 0.968 0.757 7e-94
359473447304 PREDICTED: ubiquitin-like-specific prote 0.554 0.707 0.748 8e-94
449478726234 PREDICTED: ubiquitin-like-specific prote 0.579 0.961 0.678 1e-86
42571423 570 ubiquitin-like-specific protease 1C [Ara 0.729 0.496 0.525 2e-86
22329476 571 ubiquitin-like-specific protease 1C [Ara 0.729 0.495 0.525 2e-86
>gi|255568770|ref|XP_002525356.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223535319|gb|EEF36994.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/280 (75%), Positives = 244/280 (87%)

Query: 108 EQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASP 167
           +Q +E AECM DAKIYYPSR D ESVEICYTDIN LAP ++LTSPIMNFYIRYL+LQ SP
Sbjct: 2   DQENELAECMKDAKIYYPSRDDRESVEICYTDINSLAPNSFLTSPIMNFYIRYLRLQTSP 61

Query: 168 TNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDV 227
           TN+AI DCHFFNT+FY KLK+AVS+KG DK+SFFIKFRRWWKGVNIFQK+YV IPIH+D+
Sbjct: 62  TNKAISDCHFFNTFFYKKLKQAVSYKGSDKESFFIKFRRWWKGVNIFQKAYVFIPIHDDL 121

Query: 228 HWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPI 287
           HWSLVIICIPDKEDESGPIILHLDSL LH S  +F  I+S+L++EWNY+ QEV+PSD+PI
Sbjct: 122 HWSLVIICIPDKEDESGPIILHLDSLGLHSSKEVFEEIKSYLRQEWNYMNQEVAPSDIPI 181

Query: 288 AERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWF 347
           AERIW+ LPRRI+++ I VPQQKNDYDCGLFVL+FMERF+EEAPERLKKKDLAMFGKRWF
Sbjct: 182 AERIWKRLPRRIEEKKIEVPQQKNDYDCGLFVLYFMERFIEEAPERLKKKDLAMFGKRWF 241

Query: 348 RPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCS 387
           RPEEASGLR+KIR LL  +F+ ++     S+S   P G +
Sbjct: 242 RPEEASGLRVKIRKLLLDEFKNANDTDSVSESPHLPSGVA 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356524061|ref|XP_003530651.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like-specific protease 1D-like [Glycine max] Back     alignment and taxonomy information
>gi|356565950|ref|XP_003551198.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Glycine max] Back     alignment and taxonomy information
>gi|145336892|ref|NP_176228.3| ubiquitin-like-specific protease 1D [Arabidopsis thaliana] gi|122202545|sp|Q2PS26.1|ULP1D_ARATH RecName: Full=Ubiquitin-like-specific protease 1D; AltName: Full=Protein OVERLY TOLERANT TO SALT 1 gi|83316254|gb|ABC02400.1| SUMO isopeptidase [Arabidopsis thaliana] gi|332195546|gb|AEE33667.1| ubiquitin-like-specific protease 1D [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840529|ref|XP_002888146.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297333987|gb|EFH64405.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296086553|emb|CBI32142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473447|ref|XP_003631300.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449478726|ref|XP_004155403.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42571423|ref|NP_973802.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] gi|332190475|gb|AEE28596.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22329476|ref|NP_172527.2| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] gi|75158722|sp|Q8RWN0.1|ULP1C_ARATH RecName: Full=Ubiquitin-like-specific protease 1C; AltName: Full=Protein OVERLY TOLERANT TO SALT 2 gi|20260164|gb|AAM12980.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana] gi|22136240|gb|AAM91198.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana] gi|332190474|gb|AEE28595.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
TAIR|locus:2195598584 ULP1D "UB-like protease 1D" [A 0.793 0.527 0.556 7.6e-96
TAIR|locus:2194574571 OTS2 "OVERLY TOLERANT TO SALT 0.739 0.502 0.523 1e-82
ZFIN|ZDB-GENE-070912-345991 si:dkey-100n23.3 "si:dkey-100n 0.304 0.119 0.293 1.6e-22
DICTYBASE|DDB_G0289557 778 DDB_G0289557 "peptidase C48 fa 0.569 0.284 0.307 2.6e-21
DICTYBASE|DDB_G0293508 1035 DDB_G0293508 [Dictyostelium di 0.585 0.219 0.325 8.3e-20
RGD|13055101037 Senp7 "SUMO1/sentrin specific 0.373 0.139 0.261 2.7e-17
UNIPROTKB|Q9BQF61050 SENP7 "Sentrin-specific protea 0.373 0.138 0.261 3.4e-17
UNIPROTKB|J3QT09985 SENP7 "Sentrin-specific protea 0.373 0.147 0.261 8.8e-17
ZFIN|ZDB-GENE-080204-25 1035 senp6a "SUMO1/sentrin specific 0.304 0.114 0.296 2.4e-16
UNIPROTKB|F1N1L7 1164 SENP6 "Uncharacterized protein 0.314 0.104 0.263 2.4e-16
TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 178/320 (55%), Positives = 239/320 (74%)

Query:    52 ENSSSCLPKKKE-SFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQA 110
             +N +S     +E S+E  PS++ R RK+    +++ DE       EE++ S      EQA
Sbjct:   272 DNDTSGHETPREWSWEKSPSQSSRRRKKSEDTVINVDE-------EEAQPST---VAEQA 321

Query:   111 DEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNR 170
              E  E + +  I YP+R DP  V++C  D+  LAP  YLTSP+MNFY+R+LQ Q S +N+
Sbjct:   322 AELPEGLQE-DICYPTRDDPHFVQVCLKDLECLAPREYLTSPVMNFYMRFLQQQISSSNQ 380

Query:   171 AIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWS 230
                DCHFFNTYFY KL +AV++KG DKD+FF++FRRWWKG+++F+K+Y+ IPIHED+HWS
Sbjct:   381 ISADCHFFNTYFYKKLSDAVTYKGNDKDAFFVRFRRWWKGIDLFRKAYIFIPIHEDLHWS 440

Query:   231 LVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAER 290
             LVI+CIPDK+DESG  ILHLDSL LH   SI  N++ FLK+EWNYL Q+    DLPI+E+
Sbjct:   441 LVIVCIPDKKDESGLTILHLDSLGLHSRKSIVENVKRFLKDEWNYLNQDDYSLDLPISEK 500

Query:   291 IWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPE 350
             +W++LPRRI + ++ VPQQKND+DCG FVLFF++RF+EEAP+RLK+KDL MF K+WFRP+
Sbjct:   501 VWKNLPRRISEAVVQVPQQKNDFDCGPFVLFFIKRFIEEAPQRLKRKDLGMFDKKWFRPD 560

Query:   351 EASGLRIKIRNLLKKQFQIS 370
             EAS LRIKIRN L + F++S
Sbjct:   561 EASALRIKIRNTLIELFRVS 580
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0016926 "protein desumoylation" evidence=RCA;IDA
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0009651 "response to salt stress" evidence=IGI
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-345 si:dkey-100n23.3 "si:dkey-100n23.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1305510 Senp7 "SUMO1/sentrin specific peptidase 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQF6 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QT09 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-25 senp6a "SUMO1/sentrin specific peptidase 6a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1L7 SENP6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ULP1D
ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase; Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity- it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP-OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S-OTS1 increases salt tolerance and reduce [...] (584 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G60190
Ulp1 protease family protein; Encodes a protein that can cleave residues from the C-terminus of [...] (226 aa)
      • 0.867
SUMO2
SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag; Encodes a small ubiquit [...] (116 aa)
      • 0.790
SUMO1
SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag; Encodes a small ubiquit [...] (100 aa)
      • 0.790
SUMO3
SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3); protein binding / protein tag; Encodes a small ubiquit [...] (111 aa)
      • 0.784
SUMO5
SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5); protein tag; Encodes a small ubiquitin-like modifier [...] (108 aa)
      • 0.784
SIZ1
SIZ1; DNA binding / SUMO ligase; Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase [...] (885 aa)
      • 0.679
SCE1
SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase; Encodes a SUMO liagse that directs the attachmen [...] (160 aa)
      • 0.657
AT4G25600
ShTK domain-containing protein; ShTK domain-containing protein; FUNCTIONS IN- oxidoreductase ac [...] (291 aa)
      • 0.623
AT2G12100
transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT5G28480.1) [...] (1224 aa)
      • 0.591
SAE2
SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme; Encodes one of the two subunits of the [...] (700 aa)
      • 0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 2e-38
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 1e-28
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 2e-13
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information 
 Score =  137 bits (346), Expect = 2e-38
 Identities = 63/224 (28%), Positives = 91/224 (40%), Gaps = 40/224 (17%)

Query: 148 YLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV----------SHKGGDK 197
           +L   +++FY++ L  +    +      HF N++FYSKL +            S K G K
Sbjct: 2   WLNDTVIDFYLKLLAHRLESEDYKNERVHFLNSFFYSKLTKLFPDFKKCKSKKSFKWGKK 61

Query: 198 DSFFIKFRRWWKGVN---IFQKSYVLIPIHED-VHWSLVIICIPDKEDESGPIILHLDSL 253
             F+   RRW + VN   +F    + IPI+ D  HW L+II +P K       I  LDSL
Sbjct: 62  KDFYNGVRRWTRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKT------ITILDSL 115

Query: 254 KLH------CSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVP 307
                      +    N+  +L  E    +Q+               L      R+  VP
Sbjct: 116 ISLHTEAVKKRIRPIDNMLPYLMSEALKKEQDDP------------DLTPFEIKRLTKVP 163

Query: 308 QQKNDYDCGLFVLFFMERFMEEAPERL--KKKDLAMFGKRWFRP 349
           QQ N  DCG +VL F+E   E  P       KD+  F K+    
Sbjct: 164 QQPNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVD 207

This domain contains the catalytic triad Cys-His-Asn. Length = 216
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.97
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.97
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.94
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.41
PRK14848317 deubiquitinase SseL; Provisional 95.82
PRK11836403 deubiquitinase; Provisional 95.79
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 93.19
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 89.35
PRK15371287 effector protein YopJ; Provisional 83.85
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-48  Score=388.00  Aligned_cols=211  Identities=28%  Similarity=0.518  Sum_probs=175.1

Q ss_pred             cCCCCccchhhhHHHHHhhcc---ceeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCce
Q 016505           99 EGSLHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC  175 (388)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~---~~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~  175 (388)
                      +..+.+++.+...++..++..   ..+..    ...++.||.+||+||.+++||||+||||||++|.+....... ++++
T Consensus       285 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~-yp~~  359 (511)
T KOG0778|consen  285 EDSFPPLTEEREAQVQRAFSSRNSTEILV----THFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSK-YPKV  359 (511)
T ss_pred             ccccccccHHHHHHHHHHhccCCccccee----hhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCC-CceE
Confidence            344455565556666666542   12211    235699999999999999999999999999999999876554 8899


Q ss_pred             EEEchhhHHHHHHhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCEEEEEcCCCC
Q 016505          176 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL  255 (388)
Q Consensus       176 ~ifnsfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~  255 (388)
                      |+||||||++|.+.          +|.+|+|||++++||++|+||||||.+.||+|+||++.++      +|.|||||++
T Consensus       360 h~FnTFFy~kL~~~----------gy~~VkRWTk~v~if~~d~i~vPIH~~vHW~l~vid~r~k------~i~y~DS~~~  423 (511)
T KOG0778|consen  360 HAFNTFFYTKLVGR----------GYAGVKRWTKKVDIFDKDIIFVPIHLGVHWCLAVIDLREK------TIEYYDSLGG  423 (511)
T ss_pred             EEEechhhhhhhhc----------chHHHHhHhhccCccccceeEeeeecCceEEEEEEEcccc------eEEEeeccCC
Confidence            99999999999863          4899999999999999999999999999999999999998      9999999997


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCcccc
Q 016505          256 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK  335 (388)
Q Consensus       256 ~~~~~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~  335 (388)
                      ..++ ++..|.+||.+|+..+.+.    +  ++.+.|+..      ...++|||.||+|||||+|+|+++++++.|..|+
T Consensus       424 ~~nr-~~~aL~~Yl~~E~~~k~~~----~--~d~s~w~~~------~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ft  490 (511)
T KOG0778|consen  424 GPNR-ICDALAKYLQDESRDKSKK----D--FDVSGWTIE------FVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFT  490 (511)
T ss_pred             CCcc-hHHHHHHHHHHHHhhhhcC----C--CCccchhhh------hhhccccccCCCccceEEeeechhhccCCCcccC
Confidence            7654 5599999999999875432    2  334578742      3458999999999999999999999999999999


Q ss_pred             chhhhhhh
Q 016505          336 KKDLAMFG  343 (388)
Q Consensus       336 q~d~~~f~  343 (388)
                      |+|||.||
T Consensus       491 q~dmp~fR  498 (511)
T KOG0778|consen  491 QQDMPYFR  498 (511)
T ss_pred             hhhhHHHH
Confidence            99998643

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 4e-15
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 4e-14
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 8e-13
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 1e-12
2iyc_A226 Senp1 Native Structure Length = 226 2e-12
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 4e-12
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 5e-12
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 8e-04
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 2e-11
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 5e-11
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 3e-08
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 6e-07
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 188
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 189 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 248
                GG     +   +RW KGVN+F++  +L+PIH  VHWSLV+I      D     + 
Sbjct: 86  -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------DLRKKCLK 129
Query: 249 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPV 306
           +LDS+  K H    I   +  +L++E     +    SDL + E  W H   +  +    +
Sbjct: 130 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----I 176
Query: 307 PQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
           PQQ N  DCG+F   + +    + P    +  + +F K+
Sbjct: 177 PQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK 215
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 2e-35
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 2e-35
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 4e-31
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 3e-29
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 2e-26
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 8e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
 Score =  131 bits (329), Expect = 2e-35
 Identities = 60/315 (19%), Positives = 122/315 (38%), Gaps = 59/315 (18%)

Query: 106 TTEQADEFAECM----IDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYL 161
           T+   +E+ E      +   I YP       + +   D+  L    +L   I++FY++YL
Sbjct: 2   TSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYL 61

Query: 162 QLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSF------FIKFRRWWKGVNIFQ 215
            L+   ++  +   H F+++FY  L    ++   D  +         + R W + +NIF 
Sbjct: 62  ILE-KASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFN 120

Query: 216 KSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHC------SLSIFSNIRSFL 269
           K Y+ +P++E  HW L +IC P  E+          S +         + +I +++R+  
Sbjct: 121 KDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTS 180

Query: 270 KEEWNYLKQEVSPSDLPIAERIWQH----------------------------------- 294
               +    + + S++ + +++ +                                    
Sbjct: 181 TLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKT 240

Query: 295 ----LPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPE 350
                   + D    VP+Q N  DCG+++L ++E F ++        +L +  ++WF   
Sbjct: 241 HRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNF---ELPIHLEKWFPRH 297

Query: 351 EASGLRIKIRNLLKK 365
                R  IR L+ K
Sbjct: 298 VIKTKREDIRELILK 312
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 100.0
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 94.59
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-52  Score=407.11  Aligned_cols=243  Identities=26%  Similarity=0.538  Sum_probs=196.8

Q ss_pred             hhccceeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHHhhhc--C
Q 016505          116 CMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH--K  193 (388)
Q Consensus       116 ~~~~~~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnsfF~~~L~~~~~~--k  193 (388)
                      +.....|+||++++++++.|+.+||.||.+++||||+|||||++||..+.... ....++|+||||||++|......  .
T Consensus        16 ~~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~-~~~~r~h~FnSFFy~kL~~~~~~~~~   94 (323)
T 3eay_A           16 GLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASD-ELVERSHIFSSFFYKCLTRKENNLTE   94 (323)
T ss_dssp             -CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCH-HHHHTEEECCTHHHHHHSCC------
T ss_pred             CCcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccc-cccCcEEEEchHHHHHHHhccccccc
Confidence            33445799999999999999999999999999999999999999997654321 23468999999999999864210  0


Q ss_pred             CCC----chhHHHHHHHhhhcccCCCCcEEEEEeecCCceEEEEEEcCCCCC----------------------------
Q 016505          194 GGD----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED----------------------------  241 (388)
Q Consensus       194 g~d----~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VV~~~~~~~----------------------------  241 (388)
                      +..    ....|.+|+|||++++||++|+||||||.+.||+|+|||+|..+.                            
T Consensus        95 ~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  174 (323)
T 3eay_A           95 DNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDN  174 (323)
T ss_dssp             --CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC------------------------
T ss_pred             ccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccc
Confidence            000    124689999999999999999999999999999999999996420                            


Q ss_pred             ----------------------------CCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCcccchhhhc
Q 016505          242 ----------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQ  293 (388)
Q Consensus       242 ----------------------------~~~~~I~~~DSL~~~~~~~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~  293 (388)
                                                  .+.|||+|||||+++....++..|+.||..||+.+.+..    .+++...|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~  250 (323)
T 3eay_A          175 DLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMV  250 (323)
T ss_dssp             -------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSC
T ss_pred             ccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHce
Confidence                                        135799999999997767899999999999999875432    223333343


Q ss_pred             cCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHhhhhccC
Q 016505          294 HLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAE  373 (388)
Q Consensus       294 ~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~~~f~~~~i~~~R~~i~~lIl~l~~~~~~~  373 (388)
                             ...+.+|||.|++|||||||+||++|+.+.+.+|++   ++....||++++|..+|.+|++||++|..++...
T Consensus       251 -------~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~~~  320 (323)
T 3eay_A          251 -------DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG  320 (323)
T ss_dssp             -------EECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred             -------eccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence                   234679999999999999999999999998888764   4456789999999999999999999998876543
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 1e-30
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 5e-30
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 3e-25
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 1e-23
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 1e-30
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 29/218 (13%)

Query: 128 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 187
            +   + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++K  
Sbjct: 27  SEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTK-- 82

Query: 188 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPII 247
                    K + +   +RW K V++F    +L+PIH  VHW L ++            I
Sbjct: 83  --------LKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRK------KNI 128

Query: 248 LHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVP 307
            + DS+    +      +  +LK+E    K++            WQ   ++  +     P
Sbjct: 129 TYYDSMG-GINNEACRILLQYLKQESIDKKRK------EFDTNGWQLFSKKSQEI----P 177

Query: 308 QQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
           QQ N  D G+F   + +   ++ P    ++ +  F KR
Sbjct: 178 QQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 93.25
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-38  Score=291.23  Aligned_cols=203  Identities=27%  Similarity=0.456  Sum_probs=157.7

Q ss_pred             cchhhhHHHHHhhccc--eeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhh
Q 016505          105 ETTEQADEFAECMIDA--KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYF  182 (388)
Q Consensus       105 ~~~~~~~~~~~~~~~~--~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnsfF  182 (388)
                      ++.++..++...+...  ....    ...+++||.+|+.+|.+++||||+|||||++||.++.       +++++|+|||
T Consensus         7 lt~~~~~~~~~~l~~~~~~~~~----~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~-------~~~~~~~s~f   75 (221)
T d1euva_           7 LNEKDDDQVQKALASRENTQLM----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNSFF   75 (221)
T ss_dssp             CCHHHHHHHHHHHTCSSCCEEE----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCTHH
T ss_pred             CCHHHHHHHHHHHcCCCCceee----ecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcC-------CCeEEeccHH
Confidence            3455566666666531  1111    2468999999999999999999999999999998763       4689999999


Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHhh--hcccCCCCcEEEEEeec-CCceEEEEEEcCCCCCCCCCEEEEEcCCCCCCcH
Q 016505          183 YSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSL  259 (388)
Q Consensus       183 ~~~L~~~~~~kg~d~~~~~~~vkrwt--k~~~if~kd~I~IPIn~-~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~~~  259 (388)
                      |+.|.+.          .|..+++|+  ++.+++++++||||||. ++||+|+||+.+.+      +|+|||||+.....
T Consensus        76 ~~~l~~~----------~~~~~~~w~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~~~~~  139 (221)
T d1euva_          76 YTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSNGPNA  139 (221)
T ss_dssp             HHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCCSCCH
T ss_pred             HHhHhhh----------chHHHHHHHHhcccchhhcceeEeeEecccceEEEEEeecccc------ceeeeccccCCCcH
Confidence            9999874          356788998  56799999999999997 58999999999988      99999999876543


Q ss_pred             ---HHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccc
Q 016505          260 ---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKK  336 (388)
Q Consensus       260 ---~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q  336 (388)
                         .+...|+.||..++....           ...|.       ....++|||.||+|||||||+||++++.+.|.+|+|
T Consensus       140 ~~~~i~~~l~~~l~~~~~~~~-----------~~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~~~~~~~~~~~q  201 (221)
T d1euva_         140 MSFAILTDLQKYVMEESKHTI-----------GEDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDY  201 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSS-----------CTTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-----------CCCCe-------eeeccCCCCCCCCChHHHHHHHHHHHhCCCCCccCH
Confidence               356667777766543211           11232       235679999999999999999999999998777666


Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 016505          337 KDLAMFGKRWFRPEEASGLRIKIRNLLKK  365 (388)
Q Consensus       337 ~d~~~f~~~~f~~~~i~~~R~~i~~lIl~  365 (388)
                      +|             +..+|+.|...|+.
T Consensus       202 ~d-------------~~~~R~~i~~~il~  217 (221)
T d1euva_         202 KD-------------AIRMRRFIAHLILT  217 (221)
T ss_dssp             HH-------------HHHHHHHHHHHHHT
T ss_pred             HH-------------HHHHHHHHHHHHHH
Confidence            54             45788888887764
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure