Citrus Sinensis ID: 016515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccEEEccHHccccccccccHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEEEEEcHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccHHHHHcc
Coil and Loop (DISEMBL)
MVTSVagllssfspnyVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFyglapesprylCAKARTVDAHRILEKMAFvnqtklppgilvsdKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSklssgdnkcgskvlhadkskdnslYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVAtiyapeiyptsarttgfgvasslgkvggmVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgRELKDTVDAIES
Flexible Loop (DISEMBL)
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMafvnqtklppgilVSDKAIKENEesnllrdthmlSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKvlhadkskdnSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgrELKDTVDAIES
Low Complexity Region (SEG)
MVTSVAGLLSSFSPNYVSLVIFRCfvgvglggvpvflAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered region (IsUnstruct)
******GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDK**************HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS***KCGSKVLHA***KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG************
Disordered Region (DISOPRED)
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVS*********************************SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD*******
Disordered Region (DISEMBL)
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered Region (DISPRO)
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKA**********RDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVL*ADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD**ES
Transmembrane Helix (TMHMM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.989	0.768	0.541	1e-104
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.884	0.625	0.353	1e-53
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.884	0.625	0.353	1e-53
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.884	0.625	0.348	1e-52
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.891	0.631	0.341	2e-52
P30638	520	Putative transporter ZK63	yes	no	0.914	0.682	0.315	3e-51
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.878	0.622	0.349	1e-49
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.884	0.625	0.338	9e-49
Q6PDF3	494	Putative transporter SVOP	no	no	0.889	0.698	0.302	5e-40
Q8N434	492	Putative transporter SVOP	no	no	0.889	0.701	0.301	1e-39

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/395 (54%), Positives = 276/395 (69%), Gaps = 11/395 (2%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VT VAG LS+FSPNY+ L+I RC VG+GLGG PV  +++LEF+P   RG WMV  SAFW
Sbjct: 98  VVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFW 157

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEASLAW+VM RL WRWLLAFSSVPS  LLLFY    ESPRYL  + R  +A  I
Sbjct: 158 TVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAI 217

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHML---------SMTRKITDKLKS 170
           LEK+A +N+T+LPPG+L S+   +  E  N+   +TH+L         ++++ +    K 
Sbjct: 218 LEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKE 277

Query: 171 GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKD 230
              S   L S  L++ TLLLWV+FF N F+YYG VLLT++L++  N+C         S D
Sbjct: 278 PGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSND 337

Query: 231 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL 290
            + Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLPL+ HQS  +TTVL
Sbjct: 338 VN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVL 396

Query: 291 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR 350
           LFG R+C++   TV  IYAPEIYPT+ RTTG GV SS+G++GG++CPLVAVGLV  CH  
Sbjct: 397 LFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQT 456

Query: 351 LAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 385
           +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct: 457 IAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 207/390 (53%), Gaps = 47/390 (12%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
           E  LA  VM  L WRWLL  S+VP   FA+L F+   PES RY         A   L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281

Query: 125 AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 184
           A  N   +P G L+    I   E+   +RD                       LF+    
Sbjct: 282 ATENGAPMPLGKLI----ISRQEDRGKMRD-----------------------LFTPHFR 314

Query: 185 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG---------SKVLHADKSKDNSLYV 235
            TTLLLW ++F+N FSYYG VLLT++L    + CG         +K   A +      Y+
Sbjct: 315 WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYM 374

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFG 293
           D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++  V T+LLF 
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN--VLTLLLFI 432

Query: 294 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLA 352
            R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +S +L LA
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLA 492

Query: 353 VILFEVVFVLAIASSLLFPFETMGRELKDT 382
           V  +    +LA  +S   P ET GR L+++
Sbjct: 493 V--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 207/390 (53%), Gaps = 47/390 (12%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
           E  LA  VM  L WRWLL  S+VP   FA+L F+   PES RY         A   L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281

Query: 125 AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 184
           A  N   +P G L+    I   E+   +RD                       LF+    
Sbjct: 282 ATENGAPMPLGKLI----ISRQEDRGKMRD-----------------------LFTPHFR 314

Query: 185 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG---------SKVLHADKSKDNSLYV 235
            TTLLLW ++F+N FSYYG VLLT++L    + CG         +K   A +      Y+
Sbjct: 315 WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYM 374

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFG 293
           D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++  V T+LLF 
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN--VLTLLLFI 432

Query: 294 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLA 352
            R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +S +L LA
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLA 492

Query: 353 VILFEVVFVLAIASSLLFPFETMGRELKDT 382
           V  +    +LA  +S   P ET GR L+++
Sbjct: 493 V--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 206/390 (52%), Gaps = 47/390 (12%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
           E  LA  VM  L WRWLL  S+VP   FA+L F+   PES RY         A   L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281

Query: 125 AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 184
           A  N   +P G L+    I   E+   +RD                       LF+    
Sbjct: 282 ATENGAPMPLGKLI----ISRQEDRGKMRD-----------------------LFTPHFR 314

Query: 185 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG---------SKVLHADKSKDNSLYV 235
            TTLLLW ++F+N FSYYG VLLT++L    + C          +K   A +      Y+
Sbjct: 315 WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYM 374

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFG 293
           D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ +  T+LLF 
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML--TLLLFI 432

Query: 294 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLA 352
            R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +S +L LA
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLA 492

Query: 353 VILFEVVFVLAIASSLLFPFETMGRELKDT 382
           V  +    +LA  +S   P ET GR L+++
Sbjct: 493 V--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 200/387 (51%), Gaps = 41/387 (10%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
           E  LA  VM  L WRWLL  S++P   FA+L F+   PES RY         A   L+++
Sbjct: 224 EVLLAIFVMPTLGWRWLLILSALPLMLFAILCFW--LPESARYEVLSGNQEKALATLKRI 281

Query: 125 AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 184
           A  N   +P G L+    +   E+   +RD                       LFS +  
Sbjct: 282 ATENGAPMPLGKLI----VSRQEDRGKIRD-----------------------LFSPQFR 314

Query: 185 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG-SKVLHADKSKDN--------SLYV 235
            TTLLLW ++F+N FSYYG VLLT++L    + C  S    A K K +          Y 
Sbjct: 315 CTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYT 374

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR 295
           D+   +L+E PGL+++  I+D++GRK +M + F+      L L       V TV LF  R
Sbjct: 375 DLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIAR 434

Query: 296 MCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL 355
             ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A  ++ S  + L V++
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES-SIYLTVLV 493

Query: 356 FEVVFVLAIASSLLFPFETMGRELKDT 382
           +    VLA  +S   P ET GR L+++
Sbjct: 494 YSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 193/390 (49%), Gaps = 35/390 (8%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +V  + G++S  SP++  L+ FR   G G+GGVP  +  + EF+P + R + +V + +FW
Sbjct: 157 LVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFW 216

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGLAPESPRYLCAKARTVDAH 118
             G +FEA LA+ VM    WR L+  SS+P   FA+  F+   PES R+  A      A 
Sbjct: 217 AIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFW--LPESARFDMASGHPERAL 274

Query: 119 RILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFML 178
             L+  A +N+ +LP G LVS          ++                          L
Sbjct: 275 ETLQAAARMNRVQLPTGRLVSSTKAGSESRGDIAN------------------------L 310

Query: 179 FSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKD------NS 232
            S  L +TT+LLW ++    FSYYG VL T+ L    ++C   +       +       S
Sbjct: 311 LSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRS 370

Query: 233 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLF 292
            Y D+   +LAE PGLI++ +I++  GRK +M L +    IF   L F       TVL+F
Sbjct: 371 DYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIF 430

Query: 293 GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA 352
             R  ++G    A +Y PE+YPT+ R  G G  S++ ++G +V P +A  + +   L L 
Sbjct: 431 VARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA-QVASEKSLSLP 489

Query: 353 VILFEVVFVLAIASSLLFPFETMGRELKDT 382
           + ++    +L + +SL  P ET GR++ D+
Sbjct: 490 IGIYGTAAILGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 208/392 (53%), Gaps = 51/392 (13%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVPS--FALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
           E  LA  VM  L WRWLL  S+ P   FA+L F+   PES RY         A   L+++
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281

Query: 125 AFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 184
           A  N   +P G L+    I   E+   +RD                       LF+    
Sbjct: 282 ATENGAPMPLGKLI----ISRQEDRGKMRD-----------------------LFTPHFR 314

Query: 185 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADK-------SKDNSL 233
            TTLLLW ++F+N FSYYG VLLT++L    + C      K + A         SK++  
Sbjct: 315 WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED-- 372

Query: 234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLL 291
           Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V T+LL
Sbjct: 373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--VLTLLL 430

Query: 292 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLR 350
           F  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +S +L 
Sbjct: 431 FIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT 490

Query: 351 LAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
           LAV  +    +LA  +S   P ET GR L+++
Sbjct: 491 LAV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 203/390 (52%), Gaps = 47/390 (12%)

Query: 7   GLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF 66
           G+LS+F+P Y  +++ R  VG G+GGVP  +  + EF+P+  R + ++ +  FW  GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223

Query: 67  EASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 126
           E  LA  VM  L WRWLL  S+ P     +     PES RY         A   L+++A 
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIAT 283

Query: 127 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRT 186
            N   +P G L+    I   E+   +RD                       LF+     T
Sbjct: 284 ENGAPMPLGKLI----ISRQEDRGKMRD-----------------------LFTPHFRWT 316

Query: 187 TLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADK-------SKDNSLYV 235
           TLLLW ++F+N FSYYG VLLT++L    + C      K + A         SK++  Y+
Sbjct: 317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED--YM 374

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFG 293
           D+   +L+E PG++++  ++D++GRK +M L F+  S C  LL +   ++  V T+LLF 
Sbjct: 375 DLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRN--VLTLLLFI 432

Query: 294 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLA 352
            R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +S +L LA
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLA 492

Query: 353 VILFEVVFVLAIASSLLFPFETMGRELKDT 382
           V  +    +LA  +S   P ET GR L+++
Sbjct: 493 V--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  165 bits (418), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 186/393 (47%), Gaps = 48/393 (12%)

Query: 8   LLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSA-FWTAGTIF 66
           LL+SFSP+Y+  V  R  VG G+ G    L    EF+P  +RG +M+ LS  FW AG++ 
Sbjct: 129 LLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRG-YMLPLSQVFWLAGSLL 187

Query: 67  EASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 126
             S+A VV+  + WRWL+  +S+P   L++ +   PES R+  +   T  A   LE +A 
Sbjct: 188 IISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAK 247

Query: 127 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRT 186
           +N++ +P G LV     K    ++LL                             K +RT
Sbjct: 248 MNRSVMPEGQLVEPILEKRGRFADLLDS---------------------------KYLRT 280

Query: 187 TLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSK------VLHADKSKDNSL------- 233
           TL +W+++    F+YYG +L +++L   D  CGSK      V+         L       
Sbjct: 281 TLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHI 340

Query: 234 -----YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT 288
                Y  + I++L E+    L+ + ++ +GR+LS+ +      +F L L    S+    
Sbjct: 341 FAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLI 400

Query: 289 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 348
             LF +R  V        IY  E+YPT  R  G G + SL ++G MV P ++  L+++  
Sbjct: 401 GFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSASF 460

Query: 349 LRLAVILFEVVFVLAIASSLLFPFETMGRELKD 381
           L  A+ LF  V V+   S+   P ET GR L+ 
Sbjct: 461 LG-ALCLFSSVCVVCAISAFTLPIETKGRALQQ 492

Mus musculus (taxid: 10090)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 188/391 (48%), Gaps = 46/391 (11%)

Query: 8   LLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSA-FWTAGTIF 66
           LL+SF+P+Y+  V  R  VG G+ G    L    EF+P  +RG +M+ LS  FW AG++ 
Sbjct: 129 LLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRG-YMLPLSQVFWLAGSLL 187

Query: 67  EASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 126
              LA V++  + WRWL+  +S+P   L++ +   PES R+  +   T  A   LE++A 
Sbjct: 188 IIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAK 247

Query: 127 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRT 186
           +N++ +P G LV     K    ++LL                             K +RT
Sbjct: 248 MNRSVMPEGKLVEPVLEKRGRFADLL---------------------------DAKYLRT 280

Query: 187 TLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSK------VLHADKSKDNSL------- 233
           TL +WV++    F+YYG +L +++L   D  CGSK      V   D  +  S        
Sbjct: 281 TLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFA 340

Query: 234 ---YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL 290
              Y  + I+++ E+    L+ + ++ +GR+LS+ +      +F L L    S+      
Sbjct: 341 PSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGF 400

Query: 291 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR 350
           LF +R  V        IY  E+YPT+ R  G G + SL ++G MV P ++  L+++  L 
Sbjct: 401 LFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLMSASILG 460

Query: 351 LAVILFEVVFVLAIASSLLFPFETMGRELKD 381
            A+ LF  V V+   S+   P ET GR L+ 
Sbjct: 461 -ALCLFSSVCVVCAISAFTLPIETKGRALQQ 490

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
224118680	492	predicted protein [Populus trichocarpa]	0.992	0.782	0.672	1e-139
224118546	493	predicted protein [Populus trichocarpa]	0.981	0.772	0.650	1e-139
255574249	497	sugar transporter, putative [Ricinus com	1.0	0.780	0.640	1e-136
255573803	498	sugar transporter, putative [Ricinus com	0.997	0.777	0.622	1e-131
383932368	482	MFS [Gossypium hirsutum]	0.984	0.792	0.634	1e-127
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.997	0.781	0.596	1e-118
222629519	424	hypothetical protein OsJ_16102 [Oryza sa	0.984	0.900	0.562	1e-117
218195538	529	hypothetical protein OsI_17329 [Oryza sa	0.984	0.722	0.562	1e-117
38567900	588	OSJNBa0060N03.20 [Oryza sativa Japonica	0.984	0.649	0.562	1e-117
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.984	0.781	0.562	1e-116

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/385 (67%), Positives = 306/385 (79%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           ++TS AG LS+FSPNYVSL+I RC VGVGLGG PVF ++FLEFVP SHRG WMV  S FW
Sbjct: 99  IITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFW 158

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEA+LAW+V+ RLNWRWLLAFSS+PS A L FY + PESPRYL  K R  +AH I
Sbjct: 159 TFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNI 218

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS 180
           LEK+A +NQ+KLPPG+LVSD  I  +EES   + T +LS TR +    KSGFSSF MLFS
Sbjct: 219 LEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFS 278

Query: 181 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA 240
            KLIRTTLLLW+LFF N FSYYG +LLTS+LSS + KC S VL ++  +D+SLY++VFI 
Sbjct: 279 SKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDSLYINVFIT 338

Query: 241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTG 300
           SLAELPG++LSAIIVD+ GRKLSM  MFV ACIFLLPLVFHQ A +TT LLFG RMC  G
Sbjct: 339 SLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIG 398

Query: 301 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF 360
           T TVA IYAPE+YPT  R TG GVA+++G++GGMVCPLVAVGLV  CHL+ A+ILFEVV 
Sbjct: 399 TFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVI 458

Query: 361 VLAIASSLLFPFETMGRELKDTVDA 385
           V+++   LLFPFET GREL D++ A
Sbjct: 459 VISVVCVLLFPFETSGRELSDSLAA 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/381 (65%), Positives = 306/381 (80%)

Query: 6   AGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTI 65
           +GLLS+FSPNY SLVI RC VG+GLGG  V  ++FLEFVP  HRG+WMV  S FWT G I
Sbjct: 103 SGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAI 162

Query: 66  FEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMA 125
           FEASLAW+VM RL+WRWLLAFSS+PS ALLLFYG+ PESPRYLC K R  DAH+IL+K+A
Sbjct: 163 FEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIA 222

Query: 126 FVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIR 185
            +NQ++LPPG+LV D  + + E+S   + T +LS TRK+    KS FSSFFMLFS  LI+
Sbjct: 223 LLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTLIQ 282

Query: 186 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAEL 245
           TTLLLWVL F NVFSYYG +LLTS+LSS   KCGS +L ++  +++SLY++VF+ SLAEL
Sbjct: 283 TTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAEL 342

Query: 246 PGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVA 305
           PGL+LSAIIVD++GRKLSM LM V  CIFL PL+F+ SA +TT +LFG RMCV G+ T+A
Sbjct: 343 PGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIA 402

Query: 306 TIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA 365
           T+YAPE+YPT+ R TG GVASS+G++GGM+CPLVAVGLVT C+L  A+ILFEVV  ++  
Sbjct: 403 TLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAF 462

Query: 366 SSLLFPFETMGRELKDTVDAI 386
           SSLLFPFET G+EL D+VD +
Sbjct: 463 SSLLFPFETKGQELSDSVDHV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/389 (64%), Positives = 306/389 (78%), Gaps = 1/389 (0%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           ++TS AG +S+FSPNY++LV+ RC VG GLGG  VFL++FLEF+P SHRG+WMV  S FW
Sbjct: 102 VITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFW 161

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T G IFEASLAW+VM RLNWRWLLA S+VPSF+LLLFYGL PESPRYLC K RT  AH++
Sbjct: 162 TLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQV 221

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEE-SNLLRDTHMLSMTRKITDKLKSGFSSFFMLF 179
           LEK+A VNQ +LPPG+LVS   IKE+EE S L +   +L M R+    LKSGFSSF +LF
Sbjct: 222 LEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSGFSSFSLLF 281

Query: 180 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI 239
           S  LI+TTLLLWVLFF NVFSYYG +LLTS+LSS ++KC   +LH+   +D SL++DV I
Sbjct: 282 SSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDESLFMDVLI 341

Query: 240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVT 299
            S AELPG++LSA++VD+ GRKLSM +MF+ A IFLLPLV  QS ++TT LLFG RM   
Sbjct: 342 TSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSL 401

Query: 300 GTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV 359
           GT TVA+IYAPE+YPTS R+TG G AS++G++GGMVCPLVAV LV++CH + A+ILFEVV
Sbjct: 402 GTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVV 461

Query: 360 FVLAIASSLLFPFETMGRELKDTVDAIES 388
             + +   LLFPFET GREL D + A ES
Sbjct: 462 IAITVVCILLFPFETSGRELSDRLAAPES 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/387 (62%), Positives = 290/387 (74%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           ++T  AG LS+F PNY+SL+  RC VG+GLGG PVF ++FLEFVP SHRG WMV  S  W
Sbjct: 104 LLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTWMVVYSTSW 163

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEA+LAW+VM RL+WRWLLAFSS+PS  LLLFY LAPESPRYLC K R  DAHRI
Sbjct: 164 TFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKGRFTDAHRI 223

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS 180
           LEK+A +NQ KLP GILVSD     +EES+ L    +LS+ RK     KS FSSFFMLFS
Sbjct: 224 LEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAFSSFFMLFS 283

Query: 181 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA 240
            +LI+TTLLLWVL+F N F YYG +LLTS+LS   ++C S     +  +D +LY+D+FI 
Sbjct: 284 SRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDENLYIDIFIT 343

Query: 241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTG 300
           SLAELPG+ILSAI VD+ GRK SM+ MFV+ACIFLLPLV HQSAV+ T  LFG RMC  G
Sbjct: 344 SLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLFGARMCAIG 403

Query: 301 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF 360
           T T+A IY PE+YPT  RTTG GVAS+ G++GGM+CPLVAVGLVT CH+   +I+FEVV 
Sbjct: 404 TFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAGIIVFEVVA 463

Query: 361 VLAIASSLLFPFETMGRELKDTVDAIE 387
            ++    L FP+ET G EL D+V   +
Sbjct: 464 AISAICLLFFPYETKGCELSDSVGPFD 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/383 (63%), Positives = 294/383 (76%), Gaps = 1/383 (0%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           MVT  AGLLS+FSPNY++L + R  VG GLGG  VFL++FLEF+P S+RG WMV  S FW
Sbjct: 99  MVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMWMVVFSTFW 158

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T G+IFEA+LAW+VM RLNWRW+LAFS+VPSFALL+ YG+APESPRYLC K  T DA RI
Sbjct: 159 TFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKGNTSDALRI 218

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH-MLSMTRKITDKLKSGFSSFFMLF 179
           LEK+A VNQTKLPPG+LVS ++  ++EES    +T  +L    K T + KSGFSSFFMLF
Sbjct: 219 LEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSGFSSFFMLF 278

Query: 180 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI 239
           S KLIRTTLLLWVLFF + FSYYG +LLTSKLSSG + C   +      +D+ LY++ FI
Sbjct: 279 SSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDDGLYLNAFI 338

Query: 240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVT 299
            S+AELPGL+LSAI+VD++GRK SM +MF  A IFL PL+  Q AV+TT LLFG RM   
Sbjct: 339 TSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLLFGARMNAM 398

Query: 300 GTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV 359
           GT TVA+IY+PE+YPTS RTTG GVAS++G++GGMVCPLVAVGLV  CH   AV LF V 
Sbjct: 399 GTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTAAVALFLVA 458

Query: 360 FVLAIASSLLFPFETMGRELKDT 382
            V++I    LFP++T GREL DT
Sbjct: 459 IVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/394 (59%), Positives = 285/394 (72%), Gaps = 7/394 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VTS AG LS+F+PNY+SL+I RC VG+GLGG PV  ++FLEF+P  +RG WMV  S FW
Sbjct: 98  VVTSAAGFLSAFAPNYISLIILRCLVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFW 157

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTI EASLAW VM  L WRWLLA S++PS  LL+FY + PESPRYLC K RT +A  +
Sbjct: 158 TVGTILEASLAWCVMPTLGWRWLLALSALPSLLLLIFYRVTPESPRYLCLKGRTTEALSV 217

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS------MTRKITDKLKSGFSS 174
           LEK+A +N+ +LPPGILVSD  +   E SN   D  +LS       + K  D    G SS
Sbjct: 218 LEKIARMNRAELPPGILVSDHQVGVPENSNPSEDMKLLSPEADSGSSHKDIDSNMGGISS 277

Query: 175 FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLY 234
            FML S KL+R+TLLLW++FF N FSYYG VLLTS+L++  NKCG   L ++K++D + Y
Sbjct: 278 LFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDIN-Y 336

Query: 235 VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV 294
            DVFI S AE PGL+LSA  VD +GRKLSM  MF   CIFLLPLVFHQ   +TT LLFG 
Sbjct: 337 KDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGA 396

Query: 295 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI 354
           R+C+T T TV  IYAPEIYPTS RTTG GVASS+G++GGM+CPLVAVGLV  CH   AVI
Sbjct: 397 RICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVI 456

Query: 355 LFEVVFVLAIASSLLFPFETMGRELKDTVDAIES 388
           LFE+V  ++    +LFPFET GRELKDT+ + E 
Sbjct: 457 LFEIVIFISGICVILFPFETKGRELKDTLSSSEQ 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/386 (56%), Positives = 271/386 (70%), Gaps = 4/386 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VTS AG LS+F+PNYVSL+  R  VG+GLGG PV  ++FLEFVP   RG WMV  SAFW
Sbjct: 34  IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 93

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEASLAW VM +  WRWLLA S+VPSF LLLFY + PESPR+LC K R  +A  +
Sbjct: 94  TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 153

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK---ITDKLKS-GFSSFF 176
           LEKMA +N  +LP G LVSDK I+ +E S     T +         I DK+ S G  S  
Sbjct: 154 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 213

Query: 177 MLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD 236
            L S KLIR TLLLW+ FF N FSYYG VLLTS+LS+G+  C  + + +  S D SLY +
Sbjct: 214 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 273

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           VFI+S AE+PG  LSA+IVD+IGRKLSM  M  ++C+FL PL+F ++ ++T V LFG R+
Sbjct: 274 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 333

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
           C++ + T+  IYAPEIYPTS RTTG GVASS+G++GG++CPLVAV LV SC    A++LF
Sbjct: 334 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 393

Query: 357 EVVFVLAIASSLLFPFETMGRELKDT 382
           E+V  L+  +   FPFET G  L DT
Sbjct: 394 ELVIFLSGLAVSFFPFETKGCRLNDT 419

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/386 (56%), Positives = 271/386 (70%), Gaps = 4/386 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VTS AG LS+F+PNYVSL+  R  VG+GLGG PV  ++FLEFVP   RG WMV  SAFW
Sbjct: 139 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 198

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEASLAW VM +  WRWLLA S+VPSF LLLFY + PESPR+LC K R  +A  +
Sbjct: 199 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 258

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK---ITDKLKS-GFSSFF 176
           LEKMA +N  +LP G LVSDK I+ +E S     T +         I DK+ S G  S  
Sbjct: 259 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 318

Query: 177 MLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD 236
            L S KLIR TLLLW+ FF N FSYYG VLLTS+LS+G+  C  + + +  S D SLY +
Sbjct: 319 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 378

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           VFI+S AE+PG  LSA+IVD+IGRKLSM  M  ++C+FL PL+F ++ ++T V LFG R+
Sbjct: 379 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 438

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
           C++ + T+  IYAPEIYPTS RTTG GVASS+G++GG++CPLVAV LV SC    A++LF
Sbjct: 439 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 498

Query: 357 EVVFVLAIASSLLFPFETMGRELKDT 382
           E+V  L+  +   FPFET G  L DT
Sbjct: 499 ELVIFLSGLAVSFFPFETKGCRLNDT 524

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/386 (56%), Positives = 271/386 (70%), Gaps = 4/386 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VTS AG LS+F+PNYVSL+  R  VG+GLGG PV  ++FLEFVP   RG WMV  SAFW
Sbjct: 198 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 257

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEASLAW VM +  WRWLLA S+VPSF LLLFY + PESPR+LC K R  +A  +
Sbjct: 258 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 317

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK---ITDKLKS-GFSSFF 176
           LEKMA +N  +LP G LVSDK I+ +E S     T +         I DK+ S G  S  
Sbjct: 318 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 377

Query: 177 MLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD 236
            L S KLIR TLLLW+ FF N FSYYG VLLTS+LS+G+  C  + + +  S D SLY +
Sbjct: 378 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 437

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           VFI+S AE+PG  LSA+IVD+IGRKLSM  M  ++C+FL PL+F ++ ++T V LFG R+
Sbjct: 438 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 497

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
           C++ + T+  IYAPEIYPTS RTTG GVASS+G++GG++CPLVAV LV SC    A++LF
Sbjct: 498 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 557

Query: 357 EVVFVLAIASSLLFPFETMGRELKDT 382
           E+V  L+  +   FPFET G  L DT
Sbjct: 558 ELVIFLSGLAVSFFPFETKGCRLNDT 583

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/386 (56%), Positives = 271/386 (70%), Gaps = 4/386 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           +VTS AG LS+F+PNYVSL+  R  VG+GLGG PV  ++FLEFVP   RG WMV  SAFW
Sbjct: 99  IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 158

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           T GTIFEASLAW VM +  WRWLLA S+VPSF LLLFY + PESPR+LC K R  +A  +
Sbjct: 159 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 218

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK---ITDKLKS-GFSSFF 176
           LEKMA +N  +LP G LVSDK I+ +E S     T +         I DK+ S G  S  
Sbjct: 219 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 278

Query: 177 MLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD 236
            L S KLIR TLLLW+ FF N FSYYG VLLTS+LS+G+  C  + + +  S D SLY +
Sbjct: 279 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 338

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           VFI+S AE+PG  LSA+IVD+IGRKLSM  M  ++C+FL PL+F ++ ++T V LFG R+
Sbjct: 339 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 398

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
           C++ + T+  IYAPEIYPTS RTTG GVASS+G++GG++CPLVAV LV SC    A++LF
Sbjct: 399 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 458

Query: 357 EVVFVLAIASSLLFPFETMGRELKDT 382
           E+V  L+  +   FPFET G  L DT
Sbjct: 459 ELVIFLSGLAVSFFPFETKGCRLNDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.987	0.766	0.530	3.7e-103
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.518	0.366	0.377	4.6e-49
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.569	0.425	0.324	1e-48
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.518	0.416	0.368	1.2e-48
RGD|620277	548	Svop "SV2 related protein" [Ra	0.518	0.366	0.368	3.6e-48
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.518	0.366	0.368	3.6e-48
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.518	0.366	0.368	4.6e-48
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.518	0.367	0.368	5.2e-48
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.518	0.366	0.368	5.3e-48
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.518	0.366	0.368	5.3e-48

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 210/396 (53%), Positives = 267/396 (67%)

Query:     1 MVTSVAGLLSSFSPNYVSLVIFRCXXXXXXXXXXXXXAYFLEFVPVSHRGRWMVALSAFW 60
             +VT VAG LS+FSPNY+ L+I RC             +++LEF+P   RG WMV  SAFW
Sbjct:    98 VVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFW 157

Query:    61 TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
             T GTIFEASLAW+VM RL WRWLLAFSSVPS  LLLFY    ESPRYL  + R  +A  I
Sbjct:   158 TVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAI 217

Query:   121 LEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRDTHMLSM--------TRKITDKL--K 169
             LEK+A +N+T+LPPG+L S+   +  E  N+   +TH+L            KI  K   +
Sbjct:   218 LEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKE 277

Query:   170 SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSK 229
              GFS    L S  L++ TLLLWV+FF N F+YYG VLLT++L++  N+C         S 
Sbjct:   278 PGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSN 336

Query:   230 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTV 289
             D + Y DVFIAS AE PGL++SA +VD++GRK SM  M  + CIFLLPL+ HQS  +TTV
Sbjct:   337 DVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTV 395

Query:   290 LLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL 349
             LLFG R+C++   TV  IYAPEIYPT+ RTTG GV SS+G++GG++CPLVAVGLV  CH 
Sbjct:   396 LLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQ 455

Query:   350 RLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 385
              +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct:   456 TIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 4.6e-49, Sum P(2) = 4.6e-49
 Identities = 82/217 (37%), Positives = 124/217 (57%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + CG     K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN--V 425

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 327 (120.2 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 75/231 (32%), Positives = 120/231 (51%)

Query:   161 TRKITDKLKSGFSS---FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNK 217
             T ++    K+G  S      L S  L +TT+LLW ++    FSYYG VL T+ L    ++
Sbjct:   290 TGRLVSSTKAGSESRGDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDE 349

Query:   218 C-GSKVLHADKSK-----DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA 271
             C G    +  + +       S Y D+   +LAE PGLI++ +I++  GRK +M L +   
Sbjct:   350 CHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVF 409

Query:   272 CIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV 331
              IF   L F       TVL+F  R  ++G    A +Y PE+YPT+ R  G G  S++ ++
Sbjct:   410 AIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARI 469

Query:   332 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             G +V P +A  + +   L L + ++    +L + +SL  P ET GR++ D+
Sbjct:   470 GAIVTPFIAQ-VASEKSLSLPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNML- 361

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   362 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 420

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   421 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--V 425

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--V 425

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--V 425

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 5.2e-48, Sum P(2) = 5.2e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 425

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 484

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   485 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 519

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 426

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   427 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 326 (119.8 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 229
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   230 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 286
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 426

Query:   287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 345
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   427 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   346 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.5417	0.9896	0.768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-60
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-25
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-16
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-15
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-15
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	5e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-10
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-09
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-09
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-07
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.004

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  202 bits (517), Expect = 2e-60
 Identities = 114/385 (29%), Positives = 189/385 (49%), Gaps = 49/385 (12%)

Query: 2   VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           VT+V+G+L++FSPNY   ++FR  VG+G+GG     +    EF+P   R      +  F+
Sbjct: 166 VTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF 225

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           + G +    +A+ +    +WRWL    S+P+F   L     PESPR+L ++ R  +A +I
Sbjct: 226 SLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKI 282

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF- 179
           L+++A +N  KLP  +L                    LS+ + ++   K    SF  LF 
Sbjct: 283 LQRIAKINGKKLPAEVL-------------------SLSLEKDLSSSKK--QYSFLDLFR 321

Query: 180 SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI 239
           +  L +TTL L +L+F   FSYYG VL    L                    ++Y+D+FI
Sbjct: 322 TPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDLFI 363

Query: 240 ASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFGVRMC 297
           + L ELP  +++ +++D++GR+ +M    +     + LL  V      + T L    +  
Sbjct: 364 SGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG 423

Query: 298 VTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE 357
           +T    +  +Y  E+YPT  R  G GV S++ +VG ++ P +    +    L L ++LF 
Sbjct: 424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--YLGEKWLFLPLVLFG 481

Query: 358 VVFVLAIASSLLFPFETMGRELKDT 382
            + +LA   +L  P ET G  L +T
Sbjct: 482 GLALLAGILTLFLP-ETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  105 bits (264), Expect = 3e-25
 Identities = 75/340 (22%), Positives = 123/340 (36%), Gaps = 41/340 (12%)

Query: 4   SVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTA 62
           SV  LL + + N   L+I R   G+GLGG +P   A   E+ P   RG  +  +   +  
Sbjct: 93  SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152

Query: 63  GTIFEASLAWVVMTRLNWRWLLAFSSV-PSFALLLFYGLAPESPRYLCAKARTVDAHRIL 121
           G      LA  ++    WR L     + P   LLL     PES  +L +K R     RI+
Sbjct: 153 GAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIV 211

Query: 122 EKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR 181
             +A                                L   +      +S    F  LF  
Sbjct: 212 NAIA----------------------PQMQAEAQSALPEQKATQGTKRS---VFKALFQG 246

Query: 182 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIAS 241
           K  R T+LLW+L+F  +   Y       KL        S                  + +
Sbjct: 247 KTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATG-----------GALFN 295

Query: 242 LAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTG 300
              + G I+   + D++G +++ +L +  +    L+        ++  +        V G
Sbjct: 296 FGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI-AGFFVNG 354

Query: 301 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA 340
             +         YPT+ R TG G A  +G++G ++ P++A
Sbjct: 355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 82/405 (20%), Positives = 147/405 (36%), Gaps = 74/405 (18%)

Query: 2   VTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGG----VPVFLAYFLEFVPVSHRGRWMVA 55
           +  +  LL  F+   ++  L++ R  VG+G+GG    VP++++   E  P   RG     
Sbjct: 85  LFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYIS---EIAPKKLRGALGSL 141

Query: 56  LSAFWTAGTIFEASLAWVVMTRLN---WRWLLAFSSVPSFALLLFYGLAPESPRYLCAKA 112
                T G +  A +   +    N   WR  L    VP+  LL+     PESPR+L  K 
Sbjct: 142 YQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKG 201

Query: 113 RTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGF 172
           +  +A  +L         KL     V  +  +E +                    +++  
Sbjct: 202 KLEEARAVLA--------KLRGVSDVDQEIQEEKDSLE---------------RSVEAEK 238

Query: 173 SSFFMLFSRKLIRTTLLLWVLFFA-------NVFSYYGAVLLTSKLSSGDNKCGSKVLHA 225
           +S+  LF  K +R  LL+ V+          N   YY   +  +             L  
Sbjct: 239 ASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFET-------------LGL 285

Query: 226 DKSKDNSLYVDV--FIASLAELPGLILSAIIVDKIGRK-------LSMVLMFVSACIFLL 276
             S   ++ V V  F+ +         +  +VD+ GR+         M + F+   + LL
Sbjct: 286 SDSLLVTIIVGVVNFVFTFI-------AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALL 338

Query: 277 PLVFHQSA-VVTTVLLFGVRMCVTGTIT-VATIYAPEIYPTSARTTGFGVASSLGKVGGM 334
            +   + A +V  V +             V  +   E++P   R     +A++   +   
Sbjct: 339 GVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANF 398

Query: 335 VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL 379
           +   +   +  +    +  ++F  + VL I     F  ET GR L
Sbjct: 399 LIGFLFPIITGAIGGYVF-LVFAGLLVLFILFVFFFVPETKGRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 80/395 (20%), Positives = 141/395 (35%), Gaps = 52/395 (13%)

Query: 8   LLSSFSPNYVSLVIFRCFVGVGLGG----VPVFLAYFLEFVPVSHRGRWMVALSAFWTAG 63
            L++F+ +   L++ R  +G+G+G     VP++L+   E  P + RG          T G
Sbjct: 119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLS---EIAPKALRGALTSLYQLAITFG 175

Query: 64  TIFEA---SLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
            +      S    +   L WR  L    +P+  L L     PESPR+L  K R  +A + 
Sbjct: 176 ILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKS 235

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS 180
           L ++          G    DK + +  E   ++ +      +     L S          
Sbjct: 236 LARLR---------GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIR---- 282

Query: 181 RKLIRTTLLLWVLFFA--NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVF 238
           R+L    +L W   F   N   YY   +  +   S D+     ++         +    F
Sbjct: 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSII---------VGAVNF 333

Query: 239 IASLAELPGLILSAIIVDKIGRK-------LSMVLMFVSACIFLLPLVFHQSAVVTTVLL 291
             +        ++  +VD+ GR+         M +      I     V   S     V +
Sbjct: 334 AFT-------FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386

Query: 292 FGVRMCV----TGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 347
             + + +     G   V  +   EI+P S R  G  +A +   +   +   +   ++ S 
Sbjct: 387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI 446

Query: 348 HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 382
            +    I F  + VL +     F  ET GR L++ 
Sbjct: 447 GVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 76.2 bits (187), Expect = 6e-15
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 27/226 (11%)

Query: 2   VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           V       SSF   Y   +  R   G G+GG +P+  +YF EF+    RG  +  L  FW
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300

Query: 61  TAGTIFEASLAWVVMTRLNWRWLL----------------AFSSVPSFALLLFYGLAPES 104
             G I+ A++AW ++    W + +                AF  V +   L F    PES
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF---MPES 357

Query: 105 PRYLCAKARTVDAHRILEKMAFVN-QTKLPPGILVSDKAIKENEESNLLRDTHMLSMT-- 161
           PR+     +  +A  IL+ +   N + K  P  + S   IK   + + L +    + T  
Sbjct: 358 PRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWY 417

Query: 162 ----RKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYG 203
                +   +    + +F   F+ ++   T+ L  ++F   F YYG
Sbjct: 418 QRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYG 463

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 66/340 (19%), Positives = 123/340 (36%), Gaps = 48/340 (14%)

Query: 4   SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTA 62
           S   L   F+P Y+++ I R  +G+G+GG      AY +E  P   R +    L + +  
Sbjct: 88  SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV 147

Query: 63  GTIFEASLAWVVMT--RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI 120
           G +  A +  +V+      WR L   S +P    L      PE+  +    A        
Sbjct: 148 GAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA----- 202

Query: 121 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS 180
                           LV           + + +  M          +       +  F 
Sbjct: 203 ----------------LVRTMVDILYGGEHRIANIVMTLAA-----AMVQSAGKRWPTF- 240

Query: 181 RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA 240
                   L+ ++ FAN++S+    LL + L +              S      + V  +
Sbjct: 241 ------VYLVVLVLFANLYSHPIQDLLPTYLKA----------DLGLSPHTVANI-VVFS 283

Query: 241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFHQSAVVTTVLLFGVRMCVT 299
           ++  + G  +   + D +GR+ + V   ++  + ++P+     +  V  + LF  +M V 
Sbjct: 284 NIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343

Query: 300 GTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLV 339
           G   +   +  E +PT  R  G G    LG +GG + P++
Sbjct: 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 11/203 (5%)

Query: 170 SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSK 229
           +       L    L+R  LLL + FF   F YYG +              +         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA------ 213

Query: 230 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS-MVLMFVSACIFLLPLVFHQSAVVTT 288
                + + +  L  + G +L  ++ D++GR+   +++  + A + LL L    S  +  
Sbjct: 214 ----GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 289 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 348
           V L  +   +          A E+ P  AR T  G+ ++ G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 349 LRLAVILFEVVFVLAIASSLLFP 371
                ++   + +LA    LL P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 233 LYVDVFIASLAELPGLILSAIIVDKIGRKL----SMVLMFVSACIFLLPLVFHQSAVVTT 288
           +Y   F+ +LA LPG I+SA+++DKIGR      SMVL  +S   F L     +SA++  
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC--FFLSFGNSESAMIAL 654

Query: 289 VLLF-GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 347
           + LF G+ +     + V T+   E+YP+  R T FG  ++L K   ++  L+    V   
Sbjct: 655 LCLFGGLSIAAWNALDVLTV---ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT 711

Query: 348 HLRLAVILFEVVFVLAIASSL 368
             + A ILF     LA    L
Sbjct: 712 --KAAPILFASA-ALACGGLL 729

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 93/433 (21%), Positives = 164/433 (37%), Gaps = 80/433 (18%)

Query: 1   MVTSVAGLLSSFSP-----NYVSLVIF-RCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWM 53
           ++  +A + S  SP     + ++ + F R ++GVG+GG  P+      EF     RG  M
Sbjct: 94  IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM 153

Query: 54  VALSAFWTAGTI------------FEASL-----------AWVVMTRLNWRWLLAFSSVP 90
            A+ A    G +            F+ SL           + V      WR L+ F +VP
Sbjct: 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213

Query: 91  SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESN 150
           +   L F    PE+PRY      T D  + +E+ A                 +    +  
Sbjct: 214 ALLALYFRLTIPETPRY------TADVAKDVEQAA---------------SDMSAVLQVK 252

Query: 151 LLRDTHMLSMTRKITDKLKSGFSSFFMLFSR----KLIRTTLLLWVLFFANVFSYYGAVL 206
           +  +   +       +  K+ +S FF  F +    K +  T   W  F  ++ ++YG  L
Sbjct: 253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSW--FLLDI-AFYGVNL 309

Query: 207 LTSKLSS--GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM 264
               + S  G +   +     ++    ++  ++ IA    +PG  ++  +VD IGRK   
Sbjct: 310 NQKVILSAIGYSPPAATNNAYEELYKTAV-GNLIIALAGTVPGYWVTVFLVDIIGRKPIQ 368

Query: 265 VLMFVSACIFLLPLVF------HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 318
           ++ F    +    L F          +   VL         G      I   E++PT  R
Sbjct: 369 LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFAN--FGPNATTFIVPGEVFPTRYR 426

Query: 319 TTGFGVASSLGKVGGMVCPL----------VAVGLVTSCHLRLAVILFEVVFVLAIASSL 368
           +T  G++++ GK G ++                G  T   +   + +F +   L I  +L
Sbjct: 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL 486

Query: 369 LFPFETMGRELKD 381
           L P ET G+ L++
Sbjct: 487 LIP-ETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 46/391 (11%)

Query: 4   SVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTA 62
           SV  L   F+P Y +L I R  +G+G+ G       Y +E  P   R +    L + ++ 
Sbjct: 96  SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI 155

Query: 63  GTIFEASLAWVVMTRLNWRWLLAFSSVP-SFALLLFYGLAPESPRY---LCAKARTVDAH 118
           G +  A +  +V+    WR L     +P  FAL L   L PE+  +      KA      
Sbjct: 156 GAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNL-PEAEDWKEKHAGKAPVRTMV 214

Query: 119 RILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKL---------K 169
            IL    +  + ++   +L    A                     + +            
Sbjct: 215 DIL----YRGEHRIINILLTLAAAA-----------ALWFCFAGNLQNAAIVAVLGLLCA 259

Query: 170 SGFSSFFMLFSRKLIRTTLLLWV-LFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKS 228
           + F SF +  S K   T ++L V + FA ++S+    LL + L +         L  D  
Sbjct: 260 AIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD--------LGYDPH 311

Query: 229 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVV 286
              ++   +F +      G  +   + D +G + + V   + + + ++P+      +  V
Sbjct: 312 TVANV---LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWV 368

Query: 287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS 346
             +LLF  +M   G   +        + T  R  G G   ++G +GG + P+  +G + +
Sbjct: 369 LGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPI--LGALIA 426

Query: 347 CHLRLAVILFEVVFVLAIASSLLFPFETMGR 377
             L L   L  + F L     LL   +   R
Sbjct: 427 QRLDLGTALASLSFSLTFVVILLIGLDMPSR 457

Length = 496

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 1   MVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAF 59
           ++ ++  LL +F+ +   L++ R  +G+G G + P   A   E+ P   RGR +   SA 
Sbjct: 72  LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131

Query: 60  WTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF 97
           +  G +    L  ++   L WRWL    ++    L L 
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 178 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADK--SKDNSLYV 235
           LF       TLLLW+ +F  +   Y    L + L S         L   +  S+  +  V
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPS---------LLVGQGLSRSQAGLV 260

Query: 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR 295
            +   ++    G +L   ++D++  +  ++L++      L  L    S     +  F   
Sbjct: 261 QIAF-NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319

Query: 296 MCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA 340
           + V G  +V    AP  YPT  R TG G A ++G++G M  PL+A
Sbjct: 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Length = 406

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 250 LSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMC----VTGTITVA 305
           LS  + D+IGR+  +++  V A +  +PL+       +  L F + +             
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 306 TIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTS 346
             + PE++PT  R TG  +A +L     G   P +A  LV  
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 27/134 (20%), Positives = 54/134 (40%)

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           +   SL       L+  + D+ GR+  +++  +   + LL L+F  S  +  VL     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
                   A     + +P   R    G+ S+   +G  + PL+   L +    R A ++ 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 357 EVVFVLAIASSLLF 370
            ++ +LA   + L 
Sbjct: 158 AILALLAAVLAALL 171

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 29/140 (20%), Positives = 54/140 (38%)

Query: 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 296
           V   SL    G +L+  + D+ GR+  ++L  +   +  L L F  S  +  V  F + +
Sbjct: 40  VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL 99

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
                   A     E +P   R    G+ S+   +G ++ PL+   L  S   R   ++ 
Sbjct: 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159

Query: 357 EVVFVLAIASSLLFPFETMG 376
            ++ +L     L      + 
Sbjct: 160 AILGLLLALLLLFLLRLLLL 179

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 61/353 (17%), Positives = 118/353 (33%), Gaps = 73/353 (20%)

Query: 3   TSVAGLLSSFSPNYVSLVIFRCFVGV--GLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
            ++  L   FS +   +       G+  G+G  P       ++   S RG W+    +FW
Sbjct: 70  CAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGR-TVTKWFSRSERGTWV----SFW 124

Query: 61  TAG-TIFEASLAWVVMTRLN----WRWLLAFSS----VPSFALLLFYGLAPESPRYLCAK 111
                +    L  +V+  +     W W+         + S    L    +P+S       
Sbjct: 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC-----G 179

Query: 112 ARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSG 171
               +     E                      E +E  L +        ++I  +    
Sbjct: 180 LPPAEEMPNEEP-----------------DGDAEKKEEELTK--------KQIFLQ---- 210

Query: 172 FSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN 231
               ++L ++ L       W +    VF Y   V+ T  L        ++     K K +
Sbjct: 211 ----YVLLNKVL-------WYISLGYVFVY---VVRTGILDWSPLYL-TQEKGFSKEKAS 255

Query: 232 SLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSACIFLLPLVFHQ---SAVV 286
             +    +  L  L G +L+  + DK+  GR+  + + F++  I  L + +     + ++
Sbjct: 256 WAF---TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM 312

Query: 287 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLV 339
             + LF +   V G   +  + A E+ P  A  T  G       +GG++  L 
Sbjct: 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFGVRM 296
            A+   + G I+  +  D+IG K +  +  + + +F+ PL      + ++    LFG+  
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMA 333

Query: 297 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 356
              G   +   +  + +P   R  G G+  +L    G    + A  L     + L   L 
Sbjct: 334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL--GITMGLGAALT 391

Query: 357 EVVFVLAIASSLLFPFETMGR 377
            +V        L+       R
Sbjct: 392 FIVAFWTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 2   VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFW 60
           + ++  LL  F+ +   L++ R   G+G G + P   A   ++ P   RGR +  LSA +
Sbjct: 71  LFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGF 130

Query: 61  TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL 100
             G      L  ++ +   WR      ++ +    +   L
Sbjct: 131 GLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 30/117 (25%)

Query: 30  LGGVPVFLA------YFLEFVPVSHRGRWMVALSAFWTAGTIF--------------EAS 69
           +GG+ V LA      Y  E  P   RG+ +V+ + F     IF                 
Sbjct: 129 IGGIGVGLASMLSPMYIAEIAPAHIRGK-LVSFNQF---AIIFGQLVVYFVNYFIARSGD 184

Query: 70  LAWVVMTRLNWRWLLAFSSVPS--FALLLFYGLAPESPRYLCAKARTVDAHRILEKM 124
            +W+      WR++ A  ++P+  F +LL+    PE+PRYL ++ +   A  IL K+
Sbjct: 185 ASWLNT--DGWRYMFASEAIPALLFLMLLY--FVPETPRYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 5   VAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTAG 63
           V+ LLS+ +P++  L++ R   G+  G    +  A     VP   RGR +  +    T  
Sbjct: 90  VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLA 149

Query: 64  TIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPR 106
           T+    L   +     WR    F ++   ALL    L    P 
Sbjct: 150 TVLGVPLGTFLGQLFGWRA--TFLAIAVLALLALLLLWKLLPP 190

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.98
PRK10642	490	proline/glycine betaine transporter; Provisional	99.98
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.97
PRK09952	438	shikimate transporter; Provisional	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.94
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.9
TIGR00893	399	2A0114 d-galactonate transporter.	99.9
PRK10489	417	enterobactin exporter EntS; Provisional	99.89
PRK03545	390	putative arabinose transporter; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK03893	496	putative sialic acid transporter; Provisional	99.88
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.87
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK09705	393	cynX putative cyanate transporter; Provisional	99.85
PRK05122	399	major facilitator superfamily transporter; Provisi	99.85
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.83
PRK03699	394	putative transporter; Provisional	99.83
PRK12382	392	putative transporter; Provisional	99.82
PRK11010	491	ampG muropeptide transporter; Validated	99.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.82
TIGR00900	365	2A0121 H+ Antiporter protein.	99.82
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.81
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.81
PRK15011	393	sugar efflux transporter B; Provisional	99.81
PRK10504	471	putative transporter; Provisional	99.8
PRK10091	382	MFS transport protein AraJ; Provisional	99.8
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.8
PRK09874	408	drug efflux system protein MdtG; Provisional	99.8
KOG2532	466	consensus Permease of the major facilitator superf	99.79
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.78
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.78
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.77
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.77
KOG2533	495	consensus Permease of the major facilitator superf	99.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.77
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.77
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.76
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.76
PRK11043	401	putative transporter; Provisional	99.75
PRK11902	402	ampG muropeptide transporter; Reviewed	99.75
TIGR00901	356	2A0125 AmpG-related permease.	99.74
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.72
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.72
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.72
PRK03633	381	putative MFS family transporter protein; Provision	99.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.7
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.69
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.68
PRK10133	438	L-fucose transporter; Provisional	99.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.64
PRK10054	395	putative transporter; Provisional	99.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.63
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.61
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.59
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.56
PRK09528	420	lacY galactoside permease; Reviewed	99.55
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.5
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.47
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.47
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.44
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.42
PTZ00207	591	hypothetical protein; Provisional	99.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.4
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.39
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.37
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.36
PRK09669	444	putative symporter YagG; Provisional	99.34
TIGR00805	633	oat sodium-independent organic anion transporter.	99.32
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.26
KOG2615	451	consensus Permease of the major facilitator superf	99.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.21
TIGR00895	398	2A0115 benzoate transport.	99.21
PLN00028	476	nitrate transmembrane transporter; Provisional	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.21
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.2
PRK10429	473	melibiose:sodium symporter; Provisional	99.17
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.16
TIGR00891	405	2A0112 putative sialic acid transporter.	99.15
PRK11462	460	putative transporter; Provisional	99.15
PF13347	428	MFS_2: MFS/sugar transport protein	99.14
PRK10054	395	putative transporter; Provisional	99.14
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
PRK10642	490	proline/glycine betaine transporter; Provisional	99.14
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.13
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.12
PRK12307	426	putative sialic acid transporter; Provisional	99.1
PRK11663	434	regulatory protein UhpC; Provisional	99.1
PRK10504	471	putative transporter; Provisional	99.09
PRK03893	496	putative sialic acid transporter; Provisional	99.08
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.08
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.07
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.06
PRK03699	394	putative transporter; Provisional	99.06
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
TIGR00900	365	2A0121 H+ Antiporter protein.	99.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.04
PRK03545	390	putative arabinose transporter; Provisional	99.03
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
PRK09874	408	drug efflux system protein MdtG; Provisional	99.0
PRK10091	382	MFS transport protein AraJ; Provisional	99.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.99
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.96
PRK11043	401	putative transporter; Provisional	98.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.95
TIGR00898	505	2A0119 cation transport protein.	98.95
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.94
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.93
PRK09848	448	glucuronide transporter; Provisional	98.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.9
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.89
COG2211	467	MelB Na+/melibiose symporter and related transport	98.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.87
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.87
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.83
PRK15075	434	citrate-proton symporter; Provisional	98.83
KOG2615	451	consensus Permease of the major facilitator superf	98.83
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.82
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.82
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.81
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.79
PRK05122	399	major facilitator superfamily transporter; Provisi	98.78
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.78
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.78
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.76
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.75
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.74
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.74
PRK03633	381	putative MFS family transporter protein; Provision	98.73
PRK09952	438	shikimate transporter; Provisional	98.7
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.7
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.69
PRK12382	392	putative transporter; Provisional	98.67
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.66
PRK09705	393	cynX putative cyanate transporter; Provisional	98.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.61
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.61
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.59
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.57
KOG0254	513	consensus Predicted transporter (major facilitator	98.55
KOG0569	485	consensus Permease of the major facilitator superf	98.55
PRK11010	491	ampG muropeptide transporter; Validated	98.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.54
KOG2563	480	consensus Permease of the major facilitator superf	98.53
TIGR00901	356	2A0125 AmpG-related permease.	98.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.51
PRK10133	438	L-fucose transporter; Provisional	98.47
PTZ00207	591	hypothetical protein; Provisional	98.47
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.46
PRK09528	420	lacY galactoside permease; Reviewed	98.44
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.43
PRK15011	393	sugar efflux transporter B; Provisional	98.39
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.38
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.33
TIGR00805	633	oat sodium-independent organic anion transporter.	98.33
KOG2532	466	consensus Permease of the major facilitator superf	98.32
PRK11902	402	ampG muropeptide transporter; Reviewed	98.27
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.26
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.24
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.17
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.16
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.13
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.09
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.09
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.06
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.02
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.83
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.82
KOG2533	495	consensus Permease of the major facilitator superf	97.8
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.77
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.72
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.68
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.67
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.65
KOG3626	735	consensus Organic anion transporter [Secondary met	97.52
PRK11462	460	putative transporter; Provisional	97.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.52
PRK09669	444	putative symporter YagG; Provisional	97.49
PF13347	428	MFS_2: MFS/sugar transport protein	97.47
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.47
PRK10429	473	melibiose:sodium symporter; Provisional	97.41
KOG3762	618	consensus Predicted transporter [General function	97.3
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.29
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.23
KOG3810	433	consensus Micronutrient transporters (folate trans	97.16
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.03
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.74
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.71
KOG2563	480	consensus Permease of the major facilitator superf	96.68
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.5
COG0477	338	ProP Permeases of the major facilitator superfamil	96.35
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.31
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.26
COG2211	467	MelB Na+/melibiose symporter and related transport	96.16
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.1
PRK09848	448	glucuronide transporter; Provisional	95.75
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.71
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.54
KOG3762	618	consensus Predicted transporter [General function	95.03
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.98
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.73
COG0477	338	ProP Permeases of the major facilitator superfamil	94.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.77
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.38
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.25
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.5
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	89.78
PF12832	77	MFS_1_like: MFS_1 like family	89.48
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	89.46
COG2270	438	Permeases of the major facilitator superfamily [Ge	88.55
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	87.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	86.73
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	86.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	85.25
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	84.24
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	82.74
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.1
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	80.09

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.9e-51  Score=355.95  Aligned_cols=366  Identities=40%  Similarity=0.668  Sum_probs=302.8

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      ..++.++.+++||+..+.++|.+.|+|.|+.|...++..|..|..+|+..+.+. ..|.+|++....+++....++||||
T Consensus       153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~  231 (528)
T KOG0253|consen  153 TGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY  231 (528)
T ss_pred             HHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            467788899999999999999999999999888888889999999999888777 9999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccc
Q 016515           83 LLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTR  162 (388)
Q Consensus        83 ~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
                      .....++|..+...+.+++||||||++.+||.+||.+.|+|+++.|++..|.+.+......+.+++.....+.       
T Consensus       232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~-------  304 (528)
T KOG0253|consen  232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS-------  304 (528)
T ss_pred             HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh-------
Confidence            9999999988888889999999999999999999999999999999999988765543322222211111110       


Q ss_pred             cccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcc------ccc---CCCCCchh
Q 016515          163 KITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKV------LHA---DKSKDNSL  233 (388)
Q Consensus       163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~  233 (388)
                      + ....+........++.++.+++++++|.+|+.+.+.||+..+++..+.+.+..|+...      .+.   ...+....
T Consensus       305 ~-~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d  383 (528)
T KOG0253|consen  305 K-SSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD  383 (528)
T ss_pred             h-hccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence            0 0111222235567889999999999999999999999999988887765555443321      111   11222345


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      |.+.++..+.++||.++.++++||+|||+.+..+.+.++++.+++....+.....++.|...++..+.+.+.|.|++|+|
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVy  463 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVY  463 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCccc
Confidence            78899999999999999999999999999999999999998888776554445567788888999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      |+.+|++|.|.|...+|+|++++|+++  +....+.+.+..+|+.+++++.+++.++|-|||||++
T Consensus       464 PTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  464 PTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             chhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999999999999987  3555567788999999999999999999999999986

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.7e-40  Score=305.45  Aligned_cols=346  Identities=21%  Similarity=0.303  Sum_probs=251.5

Q ss_pred             hhhhhhhcCccHHHHHHHHHHhhccCcchh-hHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH--HhcccchH
Q 016515            5 VAGLLSSFSPNYVSLVIFRCFVGVGLGGVP-VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV--VMTRLNWR   81 (388)
Q Consensus         5 i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~--~~~~~~WR   81 (388)
                      +....+...+++++++++|++.|+..|... ...-|+.|++|++.||....+.+.+..+|.+++..++.-  +.+...|+
T Consensus       105 ~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~  184 (485)
T KOG0569|consen  105 LLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWP  184 (485)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchH
Confidence            334444567899999999999999998764 556799999999999999999999999999999777644  34567899


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHh-ccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCA-KARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +.+.+..+|+++.++...++||||+||.. |||.|||++.+++.+..++.+         .  +.+++.+..+++     
T Consensus       185 ~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~---------~--~~e~~~~e~~~~-----  248 (485)
T KOG0569|consen  185 YLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE---------A--EIEEMLREIEEE-----  248 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch---------h--HHHHHHHHHHHh-----
Confidence            99999999999999999999999999998 899999999999986542111         0  111111100000     


Q ss_pred             cccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh
Q 016515          161 TRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFAN------VFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL  233 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (388)
                           +.+++...+++++++ +.+++...+.....+++      ...+|...++.+.               ....+...
T Consensus       249 -----~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a---------------G~~~~~a~  308 (485)
T KOG0569|consen  249 -----ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA---------------GFTPEEAQ  308 (485)
T ss_pred             -----ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc---------------CCCHHHHH
Confidence                 000111234555554 45555544444433332      3445555554420               01112223


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hch--hHHH---HHHHHH-HHHhhhcccc
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQS--AVVT---TVLLFG-VRMCVTGTIT  303 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~--~~~~---~~~~~~-~~~~~~~~~~  303 (388)
                      + .....++..++.++++.+++||+|||++++.+..++.++.+.+..    .+.  .+..   +...+. ...+..|..+
T Consensus       309 ~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gp  387 (485)
T KOG0569|consen  309 Y-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGP  387 (485)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCc
Confidence            3 345567778999999999999999999999988877766555432    111  1221   111111 2234467789


Q ss_pred             eeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhH
Q 016515          304 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTV  383 (388)
Q Consensus       304 ~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~  383 (388)
                      ++|.+.+|++|++.|+++.+++..+.|+.+++..+..+.+.+..+. ..+++|.+.++++.+..++++||||||+.+|+.
T Consensus       388 i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~  466 (485)
T KOG0569|consen  388 IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEII  466 (485)
T ss_pred             hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence            9999999999999999999999999999999998888888777765 678999999999999999999999999999999


Q ss_pred             HhhhC
Q 016515          384 DAIES  388 (388)
Q Consensus       384 ~~~~~  388 (388)
                      +++|+
T Consensus       467 ~~~~~  471 (485)
T KOG0569|consen  467 EELEK  471 (485)
T ss_pred             HHHHh
Confidence            99874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=8.2e-40  Score=324.13  Aligned_cols=375  Identities=24%  Similarity=0.386  Sum_probs=264.0

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc----
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR----   77 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~----   77 (388)
                      .+++++++++++++++++++|+++|++.|+. +....++.|++|+++||+..+..+.++.+|.++++.++..+.+.    
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4577888889999999999999999999875 67788999999999999999999999999999998877665432    


Q ss_pred             ---------cchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCC-ccccchhhhhhh
Q 016515           78 ---------LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG-ILVSDKAIKENE  147 (388)
Q Consensus        78 ---------~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~  147 (388)
                               .+||+++++.++|.++.++.++++||||+||..|||.+||.++++++.+.|.+..... ........+..+
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~  401 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH  401 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence                     4799999999999888888888999999999999999999999999988775432110 000000000000


Q ss_pred             -hchhhhcc-ccccc----cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC------
Q 016515          148 -ESNLLRDT-HMLSM----TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD------  215 (388)
Q Consensus       148 -~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  215 (388)
                       ..+..+.+ .....    ...........+..++.+|+++++++++++|+.|++..+.||++..|.+.+....      
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~  481 (742)
T TIGR01299       402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA  481 (742)
T ss_pred             hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00000000 00000    0000001111234577799999999999999999999999999988877542110      


Q ss_pred             --------------------------------------------------CCCCCcccccC-------------------
Q 016515          216 --------------------------------------------------NKCGSKVLHAD-------------------  226 (388)
Q Consensus       216 --------------------------------------------------~~~~~~~~~~~-------------------  226 (388)
                                                                        ..|..+.....                   
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  561 (742)
T TIGR01299       482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF  561 (742)
T ss_pred             hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence                                                              00000000000                   


Q ss_pred             ---------------------CC-----C---CchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 016515          227 ---------------------KS-----K---DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP  277 (388)
Q Consensus       227 ---------------------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~  277 (388)
                                           .+     .   ....+....+.+++.++|.+++++++||+|||++++.+.++++++.+.
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll  641 (742)
T TIGR01299       562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFF  641 (742)
T ss_pred             hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence                                 00     0   011345566777888999999999999999999998888888777666


Q ss_pred             HhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHH
Q 016515          278 LVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE  357 (388)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~  357 (388)
                      +.+..+....+++.++..++..+.++..+.+++|++|++.|++++|+++..+++|++++|++.+.+.+. +...++++++
T Consensus       642 ~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a  720 (742)
T TIGR01299       642 LSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFAS  720 (742)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence            554333222223233333444455677888999999999999999999999999999999998876654 3456777788


Q ss_pred             HHHHHHHHHhhcccccccCcch
Q 016515          358 VVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       358 ~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      ++.++++++.+++ |||+++.|
T Consensus       721 ~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       721 AALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHhC-CCCccccc
Confidence            8777777766654 89999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=6.8e-38  Score=304.82  Aligned_cols=351  Identities=24%  Similarity=0.352  Sum_probs=230.5

Q ss_pred             hhhhhhhhhcCcc------HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016515            3 TSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM   75 (388)
Q Consensus         3 ~~i~~~l~~~~~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~   75 (388)
                      ..+++++++++++      +++++++|+++|++.|+. +....|+.|++|+++||+..++.+.++.+|.++++.++..+.
T Consensus        96 ~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887        96 MIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777776      789999999999999986 677889999999999999999999999999999888765542


Q ss_pred             c-----------------------ccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChH-HHHHHHHHHHHhcCCC
Q 016515           76 T-----------------------RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTV-DAHRILEKMAFVNQTK  131 (388)
Q Consensus        76 ~-----------------------~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~-~a~~~l~~~~~~~~~~  131 (388)
                      .                       .++||++|.++++|+++.++.++++||||+|+..|+|.| ++++.+++..+.+.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~  255 (502)
T TIGR00887       176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEA  255 (502)
T ss_pred             HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccccc
Confidence            1                       258999999999999988888899999999999998875 4666666654321110


Q ss_pred             CCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016515          132 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS----RKLIRTTLLLWVLFFANVFSYYGAVLL  207 (388)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (388)
                      .     .   + +.++.+    ++          ++.  ...+++++++    ++.++..+.++..++.+.+.+|+...+
T Consensus       256 ~-----~---~-~~~~~~----~~----------~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  310 (502)
T TIGR00887       256 E-----P---D-EVEKAS----TA----------VEV--PKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN  310 (502)
T ss_pred             C-----c---c-cccchh----cc----------ccc--hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            0     0   0 000000    00          000  0012444443    223333444455566666677775544


Q ss_pred             hhhhcCCCCCCCCcccccCCCCCc-------hhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh
Q 016515          208 TSKLSSGDNKCGSKVLHADKSKDN-------SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  280 (388)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~  280 (388)
                      .+.+......   .   .......       .......+..++.+++.+++++++||+|||+.++.+..+.+++...+..
T Consensus       311 ~p~i~~~~G~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       311 QKVILSAIGY---S---PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             cHHHHHHHcC---C---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            4333211100   0   0000000       0011233444566788999999999999999888777665554433332


Q ss_pred             h--c--hhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc---------
Q 016515          281 H--Q--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---------  347 (388)
Q Consensus       281 ~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~---------  347 (388)
                      .  .  .........+...++..+..+..|.+++|++|++.|+++.|+++.+++++++++|++.+++.+..         
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG  464 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccc
Confidence            1  1  11111111111222334555678889999999999999999999999999999999998877632         


Q ss_pred             -chhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHh
Q 016515          348 -HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA  385 (388)
Q Consensus       348 -~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~  385 (388)
                       +...++++++++++++.+.. ++.|||++|++||+.+|
T Consensus       465 ~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       465 IWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE  502 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence             22346777888888776654 55699999999887554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3.4e-35  Score=286.63  Aligned_cols=335  Identities=34%  Similarity=0.612  Sum_probs=247.6

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .++++++++++++++.++++|++.|++.|+. +....++.|++|+++|++..++.+.++.+|.++++.+++.+.   +||
T Consensus       167 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr  243 (505)
T TIGR00898       167 TAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWR  243 (505)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH
Confidence            4677888899999999999999999999985 677889999999999999999999999999999988877653   499


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      +.|++.++|.++..+..+++||||+|+..++|.+|+++.+++.++.|+.+.++.      ..+.+.++    +.      
T Consensus       244 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~------~~~~~~~~----~~------  307 (505)
T TIGR00898       244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE------VLSLSLEK----DL------  307 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH------HHhhhhhh----hh------
Confidence            999999999888777778899999999999999999999999988776533211      00000000    00      


Q ss_pred             ccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                         .  +++....++++++ ++.++..+..+..++...+.||+...+.+.+.                  .+.+.+..+.
T Consensus       308 ---~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  364 (505)
T TIGR00898       308 ---S--SSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------------------GNIYLDLFIS  364 (505)
T ss_pred             ---h--hccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC------------------CChHHHHHHH
Confidence               0  0000123445554 45555555666677777777777655443221                  1234556677


Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-h-hHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-S-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ++..+++.++.+++.||+|||+.+..+.++.+++.+.+.... . .+......+...++..+.++..+.+.+|++|++.|
T Consensus       365 ~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  444 (505)
T TIGR00898       365 GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR  444 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            888899999999999999999999888777666655544322 2 12223333333444445566778899999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhh
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT  382 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~  382 (388)
                      +++.|+.+.++++|++++|++.+ + +..+...++.+++++.+++.+..++ .|||++++++|.
T Consensus       445 ~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~~~~l~~t  505 (505)
T TIGR00898       445 NLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPLPET  505 (505)
T ss_pred             hhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCCCCCCCCCC
Confidence            99999999999999999999887 3 3334566778888888887776655 589999999873

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.9e-33  Score=273.93  Aligned_cols=349  Identities=20%  Similarity=0.318  Sum_probs=243.0

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcchh-hHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVP-VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-LN   79 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~   79 (388)
                      +..++.+++++++|+++++++|+++|+|.|+.. ....|++|.+|++.||...+..+..+.+|.+++..++...... ++
T Consensus       128 ~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~  207 (513)
T KOG0254|consen  128 LFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAG  207 (513)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc
Confidence            457899999999999999999999999999864 5678999999999999999999999999999986665554322 58


Q ss_pred             hHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           80 WRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      ||.++.+..+|+++..+..+++||||+||.++||.+|+++.++++...++.+         .+.+.++.+.....    +
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---------~~~~~~~~~~~~~~----~  274 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---------VEVELELLKIKLLV----E  274 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---------hHHHHHHHHHHHHH----h
Confidence            9999999999999887778889999999999999999999999986633111         01111111100000    0


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF------SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL  233 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (388)
                          ...  ......+++++.++.+++..+...+...+.+      .||...++.. .               ...+.. 
T Consensus       275 ----~~~--~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~---------------g~~~~~-  331 (513)
T KOG0254|consen  275 ----AEV--AEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-A---------------GLKSDT-  331 (513)
T ss_pred             ----hhc--ccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-c---------------CCCCch-
Confidence                000  0000124445555566666554443333222      2333333221 0               011111 


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----h-c----h---hHHHHHHH-HHHHHhhhc
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----H-Q----S---AVVTTVLL-FGVRMCVTG  300 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~-~----~---~~~~~~~~-~~~~~~~~~  300 (388)
                      ....++.++..+++++++.+++||+|||+.++.+.....++.+.+..    . .    .   .+...... .....+..+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            34456667778889999999999999999999888776665554432    1 1    0   11222222 222344456


Q ss_pred             ccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH-HhhcccccccCcch
Q 016515          301 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA-SSLLFPFETMGREL  379 (388)
Q Consensus       301 ~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~pet~~~~l  379 (388)
                      ..+++|.+.+|+||.++|+++.+++..++++.++......+.+....+....+.+|...+.+..+ .+++..||||++++
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            77889999999999999999999999999999888776666555443224567777777777777 78888999999999


Q ss_pred             hhhHHhh
Q 016515          380 KDTVDAI  386 (388)
Q Consensus       380 ~~~~~~~  386 (388)
                      ||+.+..
T Consensus       492 eei~~~~  498 (513)
T KOG0254|consen  492 EEINELF  498 (513)
T ss_pred             HHHHHHH
Confidence            9988754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.7e-40  Score=318.07  Aligned_cols=347  Identities=27%  Similarity=0.462  Sum_probs=237.9

Q ss_pred             hhhhhhhhhhcCc---cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 016515            2 VTSVAGLLSSFSP---NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-   76 (388)
Q Consensus         2 ~~~i~~~l~~~~~---~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-   76 (388)
                      +..+++++.++++   |++.+.++|+++|++.|+. +....|+.|.+|+++||+..++.+.++.+|.+++..++..... 
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3467889999999   9999999999999999986 5677899999999999999999999999999998877765533 


Q ss_pred             --ccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhc
Q 016515           77 --RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRD  154 (388)
Q Consensus        77 --~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (388)
                        .++||..+.++++|+++..+.+.++||||+||.+|||.|||++.++++++.+..+.           +.+++.+..++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-----------~~~~~~~~~~~  233 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-----------EIEEIKAEKKE  233 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccccccccccccccccccccccc-----------ccccccccccc
Confidence              24699999999999988888888999999999999999999999988543211110           00000000000


Q ss_pred             cccccccccccccccccchhhhhhcch-hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCCCCCCCcccccCCCCCch
Q 016515          155 THMLSMTRKITDKLKSGFSSFFMLFSR-KLIRTTLLLWVLFFANVFSY-YGAVLLTSKLSSGDNKCGSKVLHADKSKDNS  232 (388)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (388)
                      .          ++.+   ..+++++++ +++++......+.....+.. +....+.+.+....          ..+.  .
T Consensus       234 ~----------~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~----------~~~~--~  288 (451)
T PF00083_consen  234 S----------QESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA----------GISN--S  288 (451)
T ss_pred             c----------cccc---eeeeecccccccccccccccccccccccccccccccccccccccc----------cccc--c
Confidence            0          0000   234445543 22333333333332222221 22222222221110          0011  1


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h--hch----hHHHHHHHHHH-HHhhhccc
Q 016515          233 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F--HQS----AVVTTVLLFGV-RMCVTGTI  302 (388)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~~~~~~~-~~~~~~~~  302 (388)
                       +....+.++..+++.+++.+++||+|||++++.+..+++++.+.+.   .  ...    ......+.... ..+..+..
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~  367 (451)
T PF00083_consen  289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWG  367 (451)
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence             1223444566678888889999999999988888776665554442   1  111    11111111111 12223556


Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhh
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT  382 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~  382 (388)
                      +..+.+.+|+||+++|+++.|+++.+++++++++|.+.+.+.+..+....+.+++++++++.+++++++|||+||++||+
T Consensus       368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei  447 (451)
T PF00083_consen  368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI  447 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence            77889999999999999999999999999999999888776666554567888899999998999999999999999999


Q ss_pred             HHh
Q 016515          383 VDA  385 (388)
Q Consensus       383 ~~~  385 (388)
                      .++
T Consensus       448 ~~~  450 (451)
T PF00083_consen  448 QEM  450 (451)
T ss_pred             Hhh
Confidence            875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.5e-33  Score=272.42  Aligned_cols=347  Identities=29%  Similarity=0.438  Sum_probs=254.7

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNW   80 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~W   80 (388)
                      +..++++++++++|++.+++.|+++|++.++. .+...+++|+.++++|+....+....+..|.+..+..+++.   .+|
T Consensus       157 ~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~---~~W  233 (521)
T KOG0255|consen  157 LFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT---RDW  233 (521)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---hhH
Confidence            45788899999999999999999999998875 56778899999999999999995566665655555555554   399


Q ss_pred             HHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           81 RWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      |+.+++..+|.++.++++++.||||||+..+||.||+++.++++++.|+++......     .+.....+   ..     
T Consensus       234 r~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~-----~~~~~~~~---~~-----  300 (521)
T KOG0255|consen  234 RWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL-----LRLELLLR---PL-----  300 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH-----HHHHHHhh---Hh-----
Confidence            999999999999887777778899999999999999999999999988544322110     01000000   00     


Q ss_pred             cccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                          ......+...+.++++ ++.++.++.+++.++...+.||+..+....+.                  .+.+.+..+
T Consensus       301 ----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~  358 (521)
T KOG0255|consen  301 ----KLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTL  358 (521)
T ss_pred             ----hhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC------------------chHHHHHHH
Confidence                0000011122444554 44777788888888888899998877655332                  345667777


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hc-hh-HHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQ-SA-VVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .+....++....+...|+.|||.....+.+...++.+.... .. .. +..........++....+.+.+.+.+|++|+.
T Consensus       359 ~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~  438 (521)
T KOG0255|consen  359 SGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV  438 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            77788999999999999999999999888877766655543 21 21 12333333444555555566799999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhhh
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  387 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~  387 (388)
                      +|+++.+.++.++++++.++|++...... ........+++....+..+++.++.|||++++++|..+|.|
T Consensus       439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  439 VRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            99999999999999999999987653333 22233344467777777777767789999999999888877

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.98  E-value=9.3e-30  Score=246.77  Aligned_cols=332  Identities=18%  Similarity=0.240  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHH
Q 016515           16 YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAF   86 (388)
Q Consensus        16 ~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~--------~~~~WR~~f~~   86 (388)
                      +..++++|+++|++.|+. +....++.|++|+++||++.++.+.+..+|.++++.++..+.        ..++||++|++
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~  199 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFAS  199 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHH
Confidence            567899999999999986 677889999999999999999999999999998877665442        35699999999


Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccc
Q 016515           87 SSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITD  166 (388)
Q Consensus        87 ~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
                      .+++.++..+..+++||||+|+..++|.|++.+.++++...++           .+...++..+..++            
T Consensus       200 ~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~------------  256 (479)
T PRK10077        200 EAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-----------ATQALQEIKHSLDH------------  256 (479)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-----------HHHHHHHHHHHHHH------------
Confidence            9988887777778899999999989998888776665422100           00000000000000            


Q ss_pred             cccccchhhhhhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhh
Q 016515          167 KLKSGFSSFFMLFSRKLIRTTLLL--WVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAE  244 (388)
Q Consensus       167 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (388)
                       ++.   ..+..+.  ........  ....+.+...++....+.+.+....          ..+. ..........++..
T Consensus       257 -~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~----------g~~~-~~~~~~~~~~~~~~  319 (479)
T PRK10077        257 -GRK---TGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTL----------GAST-DIALLQTIIVGVIN  319 (479)
T ss_pred             -hhh---hhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHc----------CCCC-chHHHHHHHHHHHH
Confidence             000   0000111  00001111  0111111111222222222221100          0011 11123344556777


Q ss_pred             hHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--h-ch-hHHHHHHHHHHHH-hhhcccceeeeecccccccchhh
Q 016515          245 LPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--H-QS-AVVTTVLLFGVRM-CVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       245 ~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      +++.+++++++||+|||+.++.+..+..+..+.+..  . .. ............. +.....+..+.+.+|++|++.|+
T Consensus       320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  399 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG  399 (479)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence            889999999999999999998877766555444322  1 11 1111111111111 11222356788999999999999


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhh------cccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhhh
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLV------TSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  387 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~  387 (388)
                      ++.|+++.++++++++++++.+.+.      +..+....++++++.++++.++.+++.|||++|++||..++.+
T Consensus       400 ~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  473 (479)
T PRK10077        400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE  473 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence            9999999999999999887776543      2334455677788888888888888889999999988766543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.98  E-value=2.9e-30  Score=250.50  Aligned_cols=321  Identities=18%  Similarity=0.235  Sum_probs=199.6

Q ss_pred             hhhhhhhhhhcCccHHH--------HHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 016515            2 VTSVAGLLSSFSPNYVS--------LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAW   72 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~--------l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~   72 (388)
                      +.++++++++++||+++        ++++|+++|++.|+. +....++.|++|+++||+..++.+.+..+|.++++.+..
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999975        899999999999986 677889999999999999999999888888888876654


Q ss_pred             HHh--------cccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhh
Q 016515           73 VVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIK  144 (388)
Q Consensus        73 ~~~--------~~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  144 (388)
                      .+.        ..+|||++|+++++++++.++++..+||||+|...+++.++..           ++          .. 
T Consensus       176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-----------~~----------~~-  233 (490)
T PRK10642        176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-----------RE----------GL-  233 (490)
T ss_pred             HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-----------cc----------cc-
Confidence            332        3689999999988777766777788999999865432221100           00          00 


Q ss_pred             hhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCCCCccc
Q 016515          145 ENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLS-SGDNKCGSKVL  223 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  223 (388)
                       .+                   .++   ..+++++++ .++.....+...+...+.+|+...+.+.+. ...        
T Consensus       234 -~~-------------------~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--------  281 (490)
T PRK10642        234 -QD-------------------GPK---VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNL--------  281 (490)
T ss_pred             -cc-------------------ccc---CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence             00                   000   012223332 223333333333444455555544443322 110        


Q ss_pred             ccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-Hh-hh-chhHHHHHHHHHHHHhhhc
Q 016515          224 HADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-LV-FH-QSAVVTTVLLFGVRMCVTG  300 (388)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~  300 (388)
                      +  .+. ...........++.+++.++.+++.||+|||+.+..+.++..+.... +. .. ..........+...++...
T Consensus       282 g--~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (490)
T PRK10642        282 H--YSE-DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC  358 (490)
T ss_pred             C--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            0  011 11112233445666788889999999999999887665533322222 11 11 1111111111222222222


Q ss_pred             ccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 016515          301 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       301 ~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      ..+....+.+|++|++.|+++.|+.+.++++++.++|++.+++.+..+ ...+.++..+.++++.+..++ .|||+++.+
T Consensus       359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~~  437 (490)
T PRK10642        359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCCC
Confidence            334456678899999999999999999999999999999988776533 233444455555666555554 589987655


Q ss_pred             h
Q 016515          380 K  380 (388)
Q Consensus       380 ~  380 (388)
                      +
T Consensus       438 ~  438 (490)
T PRK10642        438 K  438 (490)
T ss_pred             C
Confidence            4

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.3e-31  Score=239.88  Aligned_cols=354  Identities=23%  Similarity=0.319  Sum_probs=239.7

Q ss_pred             hhhhhhhhhhcCcc-------HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016515            2 VTSVAGLLSSFSPN-------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV   73 (388)
Q Consensus         2 ~~~i~~~l~~~~~~-------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~   73 (388)
                      +..+++++++++.+       ..+|.+.|++.|+|.|+. |...+..+|.+-.++||...+.+...+..|++.+..++.+
T Consensus       123 ImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  123 IMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             HHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            44567777776532       567999999999999996 6677788999999999999988888888888888777665


Q ss_pred             Hhc-------c--------cchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhc-cChHHHHHHHHHHHHhcCCCCCCCcc
Q 016515           74 VMT-------R--------LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAK-ARTVDAHRILEKMAFVNQTKLPPGIL  137 (388)
Q Consensus        74 ~~~-------~--------~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~  137 (388)
                      +..       .        .=||..|.++.+|+++.++.|+.+|||++|-..+ +|.+.|-       .+..++.+.   
T Consensus       203 v~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~---  272 (538)
T KOG0252|consen  203 VSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA-------GDMKKVLSV---  272 (538)
T ss_pred             HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh-------hcccccccc---
Confidence            421       1        1399999999999999999999999999997432 3333332       111111111   


Q ss_pred             ccchhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 016515          138 VSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNK  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
                            +.++++..       +..   ....+.....+..+|.+.+-+..+.....||...+.+|+..++.+.+.+....
T Consensus       273 ------~~~~~~~~-------~~~---~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~  336 (538)
T KOG0252|consen  273 ------DIEAESTA-------ESD---VPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV  336 (538)
T ss_pred             ------ccchhhcc-------ccC---CCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc
Confidence                  00000000       000   00001111112223322244555555667888888888888777655431111


Q ss_pred             CCCcccccCCCCCc----hhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch---hH--HHH
Q 016515          218 CGSKVLHADKSKDN----SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS---AV--VTT  288 (388)
Q Consensus       218 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~---~~--~~~  288 (388)
                      ...      .+...    ....+.++.....+||..+..+++|++|||+..+.++++..++.+.+....+   ..  ..+
T Consensus       337 ~~~------~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v  410 (538)
T KOG0252|consen  337 IPS------ANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVV  410 (538)
T ss_pred             CCC------cchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceee
Confidence            000      00000    1123455666677889999999999999999999999888887777664322   11  112


Q ss_pred             HHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc-----ccchhHHHHHHHHHHHHH
Q 016515          289 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT-----SCHLRLAVILFEVVFVLA  363 (388)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~-----~~~~~~~~~i~~~~~~~~  363 (388)
                      ...+...++..|.......+++|.||+++|+++.|++.+.|..|++++.+.+.++.+     ..+....+++++.++++.
T Consensus       411 ~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~g  490 (538)
T KOG0252|consen  411 LYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLG  490 (538)
T ss_pred             hHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHh
Confidence            223333455567777889999999999999999999999999999999988888777     455566788888888888


Q ss_pred             HHHhhcccccccCcchhhhHHhhhC
Q 016515          364 IASSLLFPFETMGRELKDTVDAIES  388 (388)
Q Consensus       364 ~~~~~~~~pet~~~~l~~~~~~~~~  388 (388)
                      .+..+++ |||++|++||+.+|.|+
T Consensus       491 i~~T~l~-pEtk~~~leei~~e~~~  514 (538)
T KOG0252|consen  491 ILFTLLI-PETKGKSLEEISNEEES  514 (538)
T ss_pred             HheeEEe-ecccccCHHHhcChhhc
Confidence            7766665 69999999999877763

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=2.4e-27  Score=226.91  Aligned_cols=309  Identities=17%  Similarity=0.191  Sum_probs=190.7

Q ss_pred             hhhhhhhhhcCccHH--------HHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016515            3 TSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV   73 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~   73 (388)
                      .++++++++++++++        .++++|+++|++.|+. +....++.|+.|+++||+..+..+.++.+|.+++..+...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~  183 (438)
T PRK09952        104 MGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL  183 (438)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999987        5899999999999986 6677899999999999999999999999999988776554


Q ss_pred             Hh--------cccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhh
Q 016515           74 VM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKE  145 (388)
Q Consensus        74 ~~--------~~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
                      +.        ..++||++|++.+++.++..+++...||||+|...+++.+++             +   .          
T Consensus       184 l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-------------~---~----------  237 (438)
T PRK09952        184 ISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-------------K---K----------  237 (438)
T ss_pred             HHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------------c---c----------
Confidence            43        358999999999998877777777899999875432211000             0   0          


Q ss_pred             hhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccc
Q 016515          146 NEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLH  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  224 (388)
                       +.                      +  ..+.+++.+  +.........+...+.+|....+.+ .+....        +
T Consensus       238 -~~----------------------~--~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--------g  282 (438)
T PRK09952        238 -RI----------------------P--VIEALLRHP--GAFLKIIALRLCELLTMYIVTAFALNYSTQNL--------G  282 (438)
T ss_pred             -cC----------------------C--HHHHHHHch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence             00                      0  000011111  1111112222333334443332222 121110        0


Q ss_pred             cCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hchhHHH-HHHHHHHHHhhhc
Q 016515          225 ADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVT-TVLLFGVRMCVTG  300 (388)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~  300 (388)
                      .  + .........+.++..+++..+.|+++||+|||+.++.+..+..++.+.+..   ..+.... ....+...++...
T Consensus       283 ~--s-~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  359 (438)
T PRK09952        283 L--P-RELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM  359 (438)
T ss_pred             C--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence            0  1 011111223345556778889999999999999887766554443332221   1111111 1112221222223


Q ss_pred             ccceeeeecccccccchhhHHHHHHHHHHh-HhHhHHHHHHHHhhccc-c-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          301 TITVATIYAPEIYPTSARTTGFGVASSLGK-VGGMVCPLVAVGLVTSC-H-LRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       301 ~~~~~~~~~~El~p~~~R~~~~~~~~~~~~-i~~~~~p~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      ..+..+.+.+|++|+++|+++.|+.+.+++ +++.++|++.+.+.+.. + ...++....++.+++.+..+. .+||++
T Consensus       360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~~  437 (438)
T PRK09952        360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKDNQR  437 (438)
T ss_pred             HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-cccccc
Confidence            345567889999999999999999998876 78999999999887743 2 233444455556666555554 467653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=3.5e-27  Score=228.05  Aligned_cols=350  Identities=20%  Similarity=0.306  Sum_probs=214.3

Q ss_pred             hhhhhhhhc---CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHH---HHHhc
Q 016515            4 SVAGLLSSF---SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLA---WVVMT   76 (388)
Q Consensus         4 ~i~~~l~~~---~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~---~~~~~   76 (388)
                      +++++++++   ..+++.++++|+++|++.|.. +....++.|++|+++|++..+..+.+..+|..+++.++   .....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  191 (481)
T TIGR00879       112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN  191 (481)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            344555533   345668999999999999875 56678999999999999999999999999999999988   44446


Q ss_pred             ccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccc
Q 016515           77 RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH  156 (388)
Q Consensus        77 ~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
                      ..+||+.|++.+++.++..+..+++||+|+++..+++.+++++.+++....+.   ++.     ...+..+..+...+  
T Consensus       192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~--  261 (481)
T TIGR00879       192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG---EDK-----ELLDELELIDIKRS--  261 (481)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC---CcH-----HHHHHHHHHHHHHH--
Confidence            77999999998777777777778899999999888887776665544322111   000     00000000000000  


Q ss_pred             cccccccccccccccchhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHH
Q 016515          157 MLSMTRKITDKLKSGFSSFFMLFSRKLIRTTL-LLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYV  235 (388)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (388)
                         ..   .+..+..+......+++ ..+... ...+.++.....+.....+.+.+....        +.  +. .....
T Consensus       262 ---~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~--~~-~~~~~  323 (481)
T TIGR00879       262 ---IE---KRSVQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA--------GV--ST-DHAFL  323 (481)
T ss_pred             ---HH---HhhccccHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc--------CC--Cc-hHHHH
Confidence               00   00000111111211111 112222 222222222111111111222111100        00  11 11122


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h-hch------hHHHHHH-HHHHHHhhhcccce
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-HQS------AVVTTVL-LFGVRMCVTGTITV  304 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~~-~~~~~~~~~~~~~~  304 (388)
                      ...+..+..+++.++.+++.||+|||+.+..+..+..++.+.+.   . ...      ....... ......+..+..+.
T Consensus       324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (481)
T TIGR00879       324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence            34455667788999999999999999988777655544433332   1 111      1111111 11122222333456


Q ss_pred             eeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515          305 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD  381 (388)
Q Consensus       305 ~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~  381 (388)
                      .+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....+++++++++++.++.+++.||+++++++|
T Consensus       404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            67788999999999999999999999999999999888777655556677788888888888888889999888765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=1.2e-25  Score=215.01  Aligned_cols=304  Identities=19%  Similarity=0.256  Sum_probs=180.0

Q ss_pred             hhhhhhhhhcCccHH--------HHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016515            3 TSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV   73 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~   73 (388)
                      .+++++++++++++.        .++++|+++|++.|+. +...+++.|+.|+++||+..+..+.+...|.++++.+...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999875        5999999999999986 6778899999999999999998888888888887765443


Q ss_pred             Hh--------cccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhh
Q 016515           74 VM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKE  145 (388)
Q Consensus        74 ~~--------~~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
                      +.        +.+|||++|+++++++++.++++..+||||++..++               .  ++              
T Consensus       183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------~--~~--------------  231 (432)
T PRK10406        183 LQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------L--KE--------------  231 (432)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---------------h--cc--------------
Confidence            32        268999999999999888777788899998641100               0  00              


Q ss_pred             hhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCCcccc
Q 016515          146 NEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGDNKCGSKVLH  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  224 (388)
                                             +   ..++++++.  ++.........+.....+|+...+.+.+ .+..        +
T Consensus       232 -----------------------~---~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~--------g  275 (432)
T PRK10406        232 -----------------------A---GSLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA--------G  275 (432)
T ss_pred             -----------------------c---ccHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence                                   0   011122221  1111122222222334445444443322 1110        0


Q ss_pred             cCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh--hh-c-hhHHHHHHHHHHHHhhhc
Q 016515          225 ADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV--FH-Q-SAVVTTVLLFGVRMCVTG  300 (388)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~  300 (388)
                        .+ .........+..+...++..+.|+++||+|||+.++.+..+..+...++.  .. . +......+.....++...
T Consensus       276 --~s-~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (432)
T PRK10406        276 --MH-ANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF  352 (432)
T ss_pred             --CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence              01 01111112233444566677889999999999877665544333322221  11 1 111111111111111111


Q ss_pred             ccceeeeecccccccchhhHHHHHHHHHHhH-hHhHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhcccccccCcc
Q 016515          301 TITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRL-AVILFEVVFVLAIASSLLFPFETMGRE  378 (388)
Q Consensus       301 ~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i-~~~~~p~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~pet~~~~  378 (388)
                      ..+..+.+.+|+||+++|+++.|++++++++ .+...|++.+.+ +..+.+. .++..++..+++.+..++  .++++|+
T Consensus       353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~  429 (432)
T PRK10406        353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKG  429 (432)
T ss_pred             HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH--hhhcccc
Confidence            2234567889999999999999999999885 344578877754 4334333 334344555555555454  3566665


Q ss_pred             h
Q 016515          379 L  379 (388)
Q Consensus       379 l  379 (388)
                      .
T Consensus       430 ~  430 (432)
T PRK10406        430 M  430 (432)
T ss_pred             c
Confidence            4

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.94  E-value=1.3e-24  Score=202.48  Aligned_cols=283  Identities=16%  Similarity=0.114  Sum_probs=181.2

Q ss_pred             ccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHHH
Q 016515           14 PNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA   93 (388)
Q Consensus        14 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l~   93 (388)
                      +++++++++|+++|++.|..+.....++|+.|+++|+++.++.+.+..+|.+++++++..+.+.+|||+.|++.++++++
T Consensus        77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~  156 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA  156 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            79999999999999999865555566799999999999999999999999999999998888889999999997777655


Q ss_pred             H-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccc
Q 016515           94 L-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGF  172 (388)
Q Consensus        94 ~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
                      . .+.++++||+|++.   ++..+                         .   ++.                       .
T Consensus       157 ~~~~~~~~lp~~p~~~---~~~~~-------------------------~---~~~-----------------------~  182 (368)
T TIGR00903       157 GIILVLAALPALPFQA---AEGFG-------------------------F---KDA-----------------------V  182 (368)
T ss_pred             HHHHHHHHcCCCCCCC---CCCcc-------------------------h---HHH-----------------------H
Confidence            4 55667789999742   10000                         0   000                       0


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHH
Q 016515          173 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSA  252 (388)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (388)
                      ..++++++++.   .+.++..++.....+|++..|.+.+..+..          .+..     ......+..+.+.+..+
T Consensus       183 ~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g----------~s~~-----~~~~~~l~~~~g~~g~~  244 (368)
T TIGR00903       183 KEFGALAGRKD---LWIIGAILGFGVALFDNLAIWLEAALRPAG----------LEDI-----AGDAVALAILAGLIGVA  244 (368)
T ss_pred             HHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CChH-----HHHHHHHHHHHHHHHHH
Confidence            01222333222   233334445555556666555544432110          0111     12223344455666678


Q ss_pred             HHHHHhchh---HHHHH-HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHH
Q 016515          253 IIVDKIGRK---LSMVL-MFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL  328 (388)
Q Consensus       253 ~l~d~~gRr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~  328 (388)
                      ++.||..||   +.... .....++....+....+......+.+...++....++..+.+.+|++|++.|+++.|+.+..
T Consensus       245 ~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       245 VIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence            888887653   33222 22222232222222222222222333333444445556778999999999999999999999


Q ss_pred             HhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          329 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       329 ~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ++++++++|.+.+.+..  +....+.++++..+++.+.+.+.
T Consensus       325 g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       325 SRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999988876663  44556777888888887776543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=1.7e-23  Score=199.88  Aligned_cols=318  Identities=19%  Similarity=0.230  Sum_probs=188.9

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.++.+++++++.++++|+++|++.|.. +....++.|+.|+++|++..++.+.++.+|.++++.+...+.+..+||
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            3567778889999999999999999998875 566788999999999999999999999999999988877777778999


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      +.|++..++.++.+......||++++...+.+  +            +.+ +            ++..    +       
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~--~------------~~~-~------------~~~~----~-------  214 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLS--G------------KGK-H------------SQSA----W-------  214 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh--c------------ccc-c------------cccc----h-------
Confidence            99998776666555555567888765321100  0            000 0            0000    0       


Q ss_pred             ccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIAS  241 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                             +.....++.+++++..+....+....+.....++....+.+.+..+..          .+ .........+..
T Consensus       215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~-~~~~~~~~~~~~  276 (426)
T PRK12307        215 -------SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG----------FD-TGVVSNLMTAAA  276 (426)
T ss_pred             -------hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CC-HHHHHHHHHHHH
Confidence                   000012233343333222222222212111111111111121111100          01 011112234456


Q ss_pred             hhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhHH-HHHHHHHHHHhhhcccceeeeecccccccchhh
Q 016515          242 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVV-TTVLLFGVRMCVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       242 ~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      ++.+++.++.+++.||+|||+....+..++.+..+.+.. ...... .....+...+...+..+..+.+..|.+|++.|+
T Consensus       277 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  356 (426)
T PRK12307        277 FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG  356 (426)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence            677889999999999999999888776665544433322 222211 111222222222233344556789999999999


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHhhcccccccC
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      ++.|+.+.++++++.++|.+.+.+.+..+.... +++....+..+.....+..||+.+
T Consensus       357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (426)
T PRK12307        357 LGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLK  414 (426)
T ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence            999999999999999999999888776653322 222333333333333333456543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=5.9e-23  Score=194.93  Aligned_cols=302  Identities=23%  Similarity=0.313  Sum_probs=187.3

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++.+++++++.+++.|+++|++.|.. +....++.|++|+++|++..++.+....+|..+++.++....+..+||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            455677788999999999999999998875 5667889999999999999999999999999999988877777889999


Q ss_pred             HHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           83 LLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        83 ~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      .|++.++..++. .....++||+|++...+++.++.                            ++.             
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------------~~~-------------  209 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR----------------------------APV-------------  209 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh----------------------------hhh-------------
Confidence            998877655544 44556689998754221110000                            000             


Q ss_pred             ccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIAS  241 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                                   .+..++++..+.....+..++.....++....+.+.+..+.+        .  + ...........+
T Consensus       210 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--------~--s-~~~~~~~~~~~~  265 (406)
T PRK11551        210 -------------LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG--------L--S-RSQAGLVQIAFN  265 (406)
T ss_pred             -------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--C-hhhhhHHHHHHH
Confidence                         000011111111112222222222223322222222211110        0  1 011112234456


Q ss_pred             hhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHH
Q 016515          242 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  321 (388)
Q Consensus       242 ~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~  321 (388)
                      ++.+++.++.+++.||+|||+.+..+.....+..+.+....+.+......+...++..+..+..+.+.+|.+|++.|+++
T Consensus       266 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  345 (406)
T PRK11551        266 IGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTG  345 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhh
Confidence            67889999999999999999988765554444433333322222222222222233334445667789999999999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHhhcc
Q 016515          322 FGVASSLGKVGGMVCPLVAVGLVTSCHLR-LAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       322 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .|+.+.++++++.++|.+.+.+.+..+.. ..+.....+.+++.+..++.
T Consensus       346 ~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        346 VGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887754333 23333444444555544444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.92  E-value=5.6e-23  Score=196.70  Aligned_cols=280  Identities=19%  Similarity=0.248  Sum_probs=164.9

Q ss_pred             hhhhhhhhhcCccHH--------HHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016515            3 TSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV   73 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~   73 (388)
                      .++++++++++++++        .++++|+++|++.|.. +....++.|++|+++||+..++.+....+|..+++.++..
T Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075         96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999987        4799999999999875 5667899999999999999999988888888777776655


Q ss_pred             H--------hcccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhh
Q 016515           74 V--------MTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKE  145 (388)
Q Consensus        74 ~--------~~~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
                      +        .+.+|||++|+++.++..+..+.+...||++++...+++                 +              
T Consensus       176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----------------~--------------  224 (434)
T PRK15075        176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-----------------P--------------  224 (434)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-----------------c--------------
Confidence            4        246899999998766544444455556666543211000                 0              


Q ss_pred             hhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccc
Q 016515          146 NEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHA  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (388)
                       +.+                       ..++...  +.++.........+.....++....+.+.+.++.       .+ 
T Consensus       225 -~~~-----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------~g-  270 (434)
T PRK15075        225 -SMR-----------------------EIFRSLA--ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-------LH-  270 (434)
T ss_pred             -ccc-----------------------cHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cC-
Confidence             000                       0000000  1111111111222223333333333333221100       00 


Q ss_pred             CCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---hhhchhH-HHHHHHHHHHHhhhcc
Q 016515          226 DKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAV-VTTVLLFGVRMCVTGT  301 (388)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~  301 (388)
                       .+.+ .......+..++.+++.++.|++.||+|||+..+.+.....+.....   ....... ..........++....
T Consensus       271 -~~~~-~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  348 (434)
T PRK15075        271 -LSAA-DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY  348 (434)
T ss_pred             -CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence             0111 11222344566678889999999999999998776544433222111   1111111 1111111111222222


Q ss_pred             cceeeeecccccccchhhHHHHHHHHHHhH-hHhHHHHHHHHhhcccch
Q 016515          302 ITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHL  349 (388)
Q Consensus       302 ~~~~~~~~~El~p~~~R~~~~~~~~~~~~i-~~~~~p~~~~~~~~~~~~  349 (388)
                      .+..+.+.+|.+|++.|+++.++.+++++. ++.++|.+.+.+.+..+.
T Consensus       349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            234456789999999999999999888875 588899999888776553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=1.5e-22  Score=192.22  Aligned_cols=303  Identities=17%  Similarity=0.214  Sum_probs=177.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-----   76 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-----   76 (388)
                      .+++++++++++|++++++.|+++|++.|.. +....++.|++|+++||+..++.+.+..+|..++++++..+..     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4677888899999999999999999999976 6667789999999999999999999999999999998776642     


Q ss_pred             -ccchHHHHHHhhHHHHHH-HHHHhcCCCCch---HHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchh
Q 016515           77 -RLNWRWLLAFSSVPSFAL-LLFYGLAPESPR---YLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL  151 (388)
Q Consensus        77 -~~~WR~~f~~~~i~~l~~-~~~~~~~pESp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (388)
                       ..|||+.|.+.++++++. .+.++++||+|+   |+..    ++.+...++.++ ++.+.++      .+   ++.   
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~-~~~~~~~------~~---~~~---  225 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDN-DQLTLEQ------PE---GAF---  225 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHh-ccccccc------cc---ccc---
Confidence             469999999998887765 445677899995   3221    111111111110 0000000      00   000   


Q ss_pred             hhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCc
Q 016515          152 LRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN  231 (388)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (388)
                                   .++.......++.+++++.    +.....+++....+++...+.+.+.++.. .     +  .+ ..
T Consensus       226 -------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-~-----~--~s-~~  279 (412)
T TIGR02332       226 -------------AHAAMPQRSMLREIFTPAI----MLYTLAYFCLTNTLSAINIWTPQILQSFN-Q-----G--SS-NI  279 (412)
T ss_pred             -------------ccccccHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-----C--Cc-HH
Confidence                         0000000012333333332    22222333333444444333333321100 0     0  00 01


Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecc
Q 016515          232 SLYVDVFIASLAELPGLILSAIIVDKIGRKLSM-VLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      ..........++.++|.++.+++.||++||+.. ........+.+.......+............++.....+..+....
T Consensus       280 ~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  359 (412)
T TIGR02332       280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPD  359 (412)
T ss_pred             HhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcc
Confidence            111224455667888999999999999977643 3332222222211111212111111111111111122233456668


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~  348 (388)
                      |.+|++.|+++.|+.+.++++|+.++|.+.+.+.+..+
T Consensus       360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            89999999999999999999999999999988777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=2.1e-22  Score=190.76  Aligned_cols=301  Identities=22%  Similarity=0.293  Sum_probs=181.4

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc--
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN--   79 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~--   79 (388)
                      .++++++.+++++++.+++.|+++|++.+.. +...+++.|++|+++|++..++.+....+|..+++.++..+.+..+  
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3567778889999999999999999998875 6677889999999999999999999999999999988877765555  


Q ss_pred             hHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           80 WRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      ||+.|.+.+++.++..+....+||+|++...+++.++..+..++..+   .+ +        ..+ ++.    +      
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--------~~~-~~~----~------  223 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GE-H--------RIA-NIV----M------  223 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cc-h--------hhh-hhh----h------
Confidence            99999998888777777777889998775432221111111111100   00 0        000 000    0      


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCCCCCcccccCCCCCchhHHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVF  238 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                                ......+... ++.+.....+........+..+... +....+....        +  .+ .........
T Consensus       224 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g--~s-~~~~~~~~~  281 (405)
T TIGR00891       224 ----------TLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADL--------G--LS-PHTVANIVV  281 (405)
T ss_pred             ----------hhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh--------C--CC-HHHHHHHHH
Confidence                      0000000000 0111111111111111111111111 1111111000        0  01 011112234


Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-hhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ...++.+++.++.+++.||+|||+.+..+...+.+..+.. ....+.+......+...++..+..+..+.+.+|.+|++.
T Consensus       282 ~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
T TIGR00891       282 FSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ  361 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch
Confidence            4566778999999999999999998877665543332222 222222222222222223334445566678899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~  348 (388)
                      |+++.|+.+.++.+++.++|.+.+.+.+..+
T Consensus       362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       362 RAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999888655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.9e-23  Score=187.96  Aligned_cols=318  Identities=21%  Similarity=0.323  Sum_probs=210.4

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcc-hhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHH--HHHhccc
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLA--WVVMTRL   78 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~--~~~~~~~   78 (388)
                      .+.+.+++.+++++...+.++-+++|+.-|. .|.....+..|+|+++||+..++.+++..+|..+.+++.  ..+..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            5678899999999999999999999998875 477778999999999999999999999999999999888  6667777


Q ss_pred             chHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccc
Q 016515           79 NWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHM  157 (388)
Q Consensus        79 ~WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      +||..|++.++.++++ ++.++.++|+|+   +.|                   .|+.     .+.+.|+.+.. ++   
T Consensus       183 ~w~~~f~~pgiiaiival~~~~~~rd~Pq---s~G-------------------LP~i-----e~~~~d~~e~~-~~---  231 (448)
T COG2271         183 GWRAAFYFPGIIAIIVALILLFLLRDRPQ---SEG-------------------LPPI-----EEYRGDPLEIY-EE---  231 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCcc---ccC-------------------CCCH-----HHhhcCchhhh-hh---
Confidence            9999999999888765 566777899996   111                   1110     00000000000 00   


Q ss_pred             ccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhcCCCCCCCCcccccCCCCCchhH
Q 016515          158 LSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY---YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLY  234 (388)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (388)
                              ++++.+++.++.++  ++..+.-.+|++.+++.+.|   |++.-|.+....+..       +.  +. .+.-
T Consensus       232 --------~~~~~~ls~~~i~~--~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k-------~~--s~-~~a~  291 (448)
T COG2271         232 --------EKENEGLTAWQIFV--KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK-------GF--SL-VKAN  291 (448)
T ss_pred             --------hccCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------CC--CH-HHHH
Confidence                    00011122222221  12222234566667777766   455555543332211       11  11 1111


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHh--chhHHHHHHHHHHH-HHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeeec
Q 016515          235 VDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYA  309 (388)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (388)
                      ....+.=.++++|++++|+++||+  |||..+.+.+++.. +++.......  +.....++++...+++.|.--+....+
T Consensus       292 ~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a  371 (448)
T COG2271         292 WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAA  371 (448)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            223344567899999999999996  77776654433333 3333333322  235555666666676666655677789


Q ss_pred             ccccccchhhHHHHHHHHHHhH-hHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          310 PEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       310 ~El~p~~~R~~~~~~~~~~~~i-~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .|..|.+..|++.|+...++.+ |+..+....+++.|..+..+.+.++.+.++++.+.....
T Consensus       372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 888888877877777676777777777766666555443

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=5.5e-22  Score=187.29  Aligned_cols=303  Identities=26%  Similarity=0.362  Sum_probs=188.8

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++.+++++++.+++.|++.|++.|.. +...+++.|+.|+++|++..+..+....+|..+++.++..+.+..+||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~  172 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS  172 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence            456667788899999999999999998875 6777899999999999999999999999999999999888888889999


Q ss_pred             HHHHhhHHH-HHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           83 LLAFSSVPS-FALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        83 ~f~~~~i~~-l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      .|++.++.. +...+...++||+|++...+ +.+++.+..+++...+.++.++         +..+++            
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~------------  230 (398)
T TIGR00895       173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS---------ALPEQK------------  230 (398)
T ss_pred             ehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc---------cccccc------------
Confidence            999886444 44455667789999887655 4455555555443322111000         000000            


Q ss_pred             ccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIAS  241 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
                          .+.+......+.+++++..+....++...+.....++....+.+.+....+          .+. ........+..
T Consensus       231 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~-~~~~~~~~~~~  295 (398)
T TIGR00895       231 ----ATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG----------FSL-SLAATGGALFN  295 (398)
T ss_pred             ----cccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCH-HHHHHHHHHHH
Confidence                000000011222333333444444444444444444433333332221100          011 11112234456


Q ss_pred             hhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHH
Q 016515          242 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  321 (388)
Q Consensus       242 ~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~  321 (388)
                      ++.+++.++.+++.||+|||+.............+......+........+...++.....+..+.+.+|.+|++.|+++
T Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  375 (398)
T TIGR00895       296 FGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATG  375 (398)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence            67789999999999999999554433333322222222122222222233333344444556677899999999999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHh
Q 016515          322 FGVASSLGKVGGMVCPLVAVGL  343 (388)
Q Consensus       322 ~~~~~~~~~i~~~~~p~~~~~~  343 (388)
                      .|+.+.++.+|+.++|.+.+.+
T Consensus       376 ~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       376 VGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999887753

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=4.4e-22  Score=190.47  Aligned_cols=325  Identities=13%  Similarity=0.132  Sum_probs=187.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.++.+++++++.+++.|++.|++.|.. +....++.|++|+++||+..++.+....+|..+++.+...+.+.++||
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            3567778888999999999999999988864 666788999999999999999999999999999999888887888999


Q ss_pred             HHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +.|++.+++.++. ++..+++||+|++.....+.++.             +        + ..+.+++.    +      
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------------~--------~-~~~~~~~~----~------  225 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-------------H--------D-ALELAQQQ----E------  225 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-------------c--------c-ccccchhc----c------
Confidence            9999988776654 44456689988642100000000             0        0 00000000    0      


Q ss_pred             cccccccccccchh-hh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccccCCCCCchhHHHH
Q 016515          161 TRKITDKLKSGFSS-FF-MLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLHADKSKDNSLYVDV  237 (388)
Q Consensus       161 ~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                            +.+.+... ++ ..++.+   ....+....+...+.+++...+.+ .+....        +.  +. .......
T Consensus       226 ------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--------g~--s~-~~a~~~~  285 (434)
T PRK11663        226 ------GAGLSRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYMSETL--------GV--DL-VTANSAV  285 (434)
T ss_pred             ------ccCCChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CC--CH-HHHHHHH
Confidence                  00000000 00 011111   111111222222222333222222 221110        00  10 1111223


Q ss_pred             HHHHhhhhHHHHHHHHHHHHh--chh-HHHHHHHH--HHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          238 FIASLAELPGLILSAIIVDKI--GRK-LSMVLMFV--SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~--gRr-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ....++..++.++.|++.||+  +|| ........  ....+.+......+........+...++..+.......+.+|.
T Consensus       286 ~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  365 (434)
T PRK11663        286 SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAEC  365 (434)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            344567789999999999998  333 32221111  1111111111111211211222222222222222334567899


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      +|++.|+++.|+.+.++++|+.++|.+.+++.+..+....+...+++++++++..+...++.++++.
T Consensus       366 ~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
T PRK11663        366 SHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPREA  432 (434)
T ss_pred             ccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence            9999999999999999999999999999998887666666777777777777666655555555543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.4e-21  Score=175.66  Aligned_cols=295  Identities=19%  Similarity=0.260  Sum_probs=191.7

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..+++++++++|||+.++++|++.|++.|.. +....+..+.+|+++|+++.+....+.+++.+++.+++.++.+.+|||
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR  167 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR  167 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence            4678999999999999999999999999986 567788899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      ..|++.+..+++. +..+..+|  |+-     +                .+.++.                         
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~~-----~----------------~~~~~~-------------------------  199 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PSE-----I----------------SGSLPG-------------------------  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--Ccc-----C----------------CCCCCc-------------------------
Confidence            9999998888775 45667788  320     0                000000                         


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                                .......+++++.....++....+....+..|  .+..+.+.+..           .-+........+..
T Consensus       200 ----------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~f--tYi~P~L~~v~-----------g~s~~~vs~~Ll~~  256 (394)
T COG2814         200 ----------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALY--TYIRPFLESVA-----------GFSVSAVSLVLLAF  256 (394)
T ss_pred             ----------chhHHHHHhcCchHHHHHHHHHHHHcchhhhH--HhHHHHHHHcc-----------CCCHhHHHHHHHHH
Confidence                      00001112233322222222222322222222  22333332111           11112334556777


Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhhcccceeeeecccccccchhh
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      +++.++|++++|++.|| +.|+.+........+..+.+.+ .++.+......+...+.............++ .-++.+.
T Consensus       257 Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~  334 (394)
T COG2814         257 GIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAAD  334 (394)
T ss_pred             HHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchH
Confidence            88999999999999999 7777776665544444444433 2333333333333222221111122334555 5578899


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .+.++....-++|..++..+.+.+.+..+.....+.-+.+.+++.++....
T Consensus       335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887665555555556666666555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.90  E-value=1.8e-21  Score=183.24  Aligned_cols=317  Identities=16%  Similarity=0.187  Sum_probs=182.3

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.++.+++++++.++++|+++|++.|.. +....++.|++|+++|++..+..+....+|.++++.++..+.+..+||
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  148 (399)
T TIGR00893        69 WGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ  148 (399)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence            3566777888999999999999999998875 667789999999999999999999999999999999988877888999


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +.|.+.++..++..+ ..+..||+|+--  +...++.++...+       +           ...+.+.   +       
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~-----------~~~~~~~---~-------  198 (399)
T TIGR00893       149 WAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVG-------G-----------LLAEQQG---K-------  198 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcch-------h-----------hcccccc---c-------
Confidence            999988887666544 445567766410  0001110000000       0           0000000   0       


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                           ++.+......++.++++...   ......+.....+.....+.+ .+.+..        +  .+ .........+
T Consensus       199 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~-~~~~~~~~~~  259 (399)
T TIGR00893       199 -----GPSTPKKYQIKELLKDRRVW---GLALGQFLVNIGLGFFLTWFPTYLVQER--------G--LS-ILEAGFMASL  259 (399)
T ss_pred             -----cccCCCccchHHHhcCHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHh--------c--cc-HHHhhHHHHH
Confidence                 00000011222233222111   111112222222222221111 111100        0  00 0111122344


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhH--HHHHHHH--HHHH-HHH-HHhhh-chhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKL--SMVLMFV--SACI-FLL-PLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~--~~~~~~~--~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ..+..+++.++.+++.||+|||+  .......  .+.+ ..+ ..... .+.............+..+..+..+.+.+|.
T Consensus       260 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (399)
T TIGR00893       260 PGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDN  339 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhh
Confidence            56667889999999999999996  1111111  1101 111 11111 1111112222222222233456778899999


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhh
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSL  368 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  368 (388)
                      +|++.|+++.|+.+.+..+++.++|.+.+.+.+..+ ....+.+.+++.+++.+..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       340 APGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             cChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998887665 44555556666666555444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.89  E-value=5.9e-21  Score=181.86  Aligned_cols=307  Identities=12%  Similarity=0.041  Sum_probs=191.5

Q ss_pred             CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHH
Q 016515           13 SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPS   91 (388)
Q Consensus        13 ~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~   91 (388)
                      .++++.+++.|+++|++.|.. +....++.|+.|+++|++..+..+....+|..+++.++..+....+||+.|++.++..
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~  186 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT  186 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578899999999999987654 5566788999999999999999999999999999999888777789999999888777


Q ss_pred             HHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccccccccc
Q 016515           92 FALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSG  171 (388)
Q Consensus        92 l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (388)
                      ++..+....+||+|+..  +++                 +         ...  ++.                       
T Consensus       187 ~~~~~~~~~l~~~~~~~--~~~-----------------~---------~~~--~~~-----------------------  213 (417)
T PRK10489        187 FITLLPLLRLPALPPPP--QPR-----------------E---------HPL--RSL-----------------------  213 (417)
T ss_pred             HHHHHHHHhCCCCCCCC--ccc-----------------c---------cch--HHH-----------------------
Confidence            66666666778765310  000                 0         000  000                       


Q ss_pred             chhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHH
Q 016515          172 FSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILS  251 (388)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      .+.++..++++..+...+......   . ..+...+.+.+..+       ..+.  +. ...........++.+++.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~~~-------~~g~--~~-~~~g~~~~~~~~g~~ig~~~~  279 (417)
T PRK10489        214 LAGFRFLLASPVVGGIALLGGLLT---M-ASAVRVLYPALADE-------VWQM--GA-AQIGLLYAAVPLGAALGALTS  279 (417)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHH---H-HHhHHHhhHHHHHh-------ccCC--Ch-hHhHHHHHHHHHHHHHHHHHH
Confidence            001112222222222221111111   0 11111111111110       0000  10 111122234456678888999


Q ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhH
Q 016515          252 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV  331 (388)
Q Consensus       252 ~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i  331 (388)
                      +++.||.++|+.+..+..+..+..+.+....+........+...++.....+..+.+..|..|++.|+++.|+.+....+
T Consensus       280 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  359 (417)
T PRK10489        280 GWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT  359 (417)
T ss_pred             HHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence            99999877777666665554444433333332222222222222222122234457889999999999999999999999


Q ss_pred             hHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhh
Q 016515          332 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI  386 (388)
Q Consensus       332 ~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~  386 (388)
                      |..++|.+.+.+.+..+....+++++++.++..++.+...||++++++||+.+|-
T Consensus       360 g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        360 GDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             hHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            9999999999888876666667777777676666677777999999999988764

>PRK03545 putative arabinose transporter; Provisional

Probab=99.89  E-value=1.9e-20  Score=176.85  Aligned_cols=294  Identities=16%  Similarity=0.127  Sum_probs=180.8

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++++++++++|+++++++|+++|++.+.. +...+++.|+.|+++|++..++.+....+|..++++++..+.+..|||
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            4567788889999999999999999998765 566788999999999999999999999999999999988877788999


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +.|++.++..++..+ ....+||.|+    +.+ ++                          .                 
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~-~~--------------------------~-----------------  195 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPS----EHS-GS--------------------------L-----------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC----CCc-ch--------------------------H-----------------
Confidence            999998887666533 3445676542    000 00                          0                 


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGA-VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                                  +..++.++++..+......   +.....++.. .+..+.+.+..        +  .+. ........+
T Consensus       196 ------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~--------g--~s~-~~~~~~~~~  249 (390)
T PRK03545        196 ------------KSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQQVA--------G--LSE-NFATLLLLL  249 (390)
T ss_pred             ------------HHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc--------C--CCc-cHHHHHHHH
Confidence                        0001112122111111111   1111111111 11122221100        0  011 111122344


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhh
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      .++..+++.++.+++.||.|||...+.................+........+...++.....+.......|..| +.|+
T Consensus       250 ~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~  328 (390)
T PRK03545        250 FGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATD  328 (390)
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHH
Confidence            566778999999999999999876544333322222222222222222222222222222222333445667766 5889


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      ++.|+.+...++|..++|.+.+.+.+..+....+...+++.+++.++.++..
T Consensus       329 ~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        329 VAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999988877766777777777777776666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=2.4e-21  Score=187.09  Aligned_cols=314  Identities=13%  Similarity=0.089  Sum_probs=175.5

Q ss_pred             hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHH
Q 016515           11 SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR---LNWRWLLAF   86 (388)
Q Consensus        11 ~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~---~~WR~~f~~   86 (388)
                      +++++++.++++|+++|++.|.. +....++.||+|+++||++.++.+.+..+|.++++++.......   .+||..|.+
T Consensus       117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~  196 (467)
T PRK09556        117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIF  196 (467)
T ss_pred             cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHH
Confidence            34789999999999999988764 67778999999999999999999999999999988877554433   269999988


Q ss_pred             hhHHHHHHH-HHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccc
Q 016515           87 SSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKIT  165 (388)
Q Consensus        87 ~~i~~l~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
                      .++++++.. +.+++.+|+|+..   +..++ ++..      ++..          . ++++..                
T Consensus       197 ~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~------~~~~----------~-~~~~~~----------------  239 (467)
T PRK09556        197 PSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIF------GEPI----------S-EEDKET----------------  239 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhcc------cCcc----------c-hhhhcc----------------
Confidence            777766553 3445567777521   11000 0000      0000          0 000000                


Q ss_pred             ccccccc-hhh-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccccCCCCCchhHHHHHHHHh
Q 016515          166 DKLKSGF-SSF-FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL  242 (388)
Q Consensus       166 ~~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (388)
                      ++++... ..+ +..++.+   ..+.+....+.....+++...+.+ .+.+..        +.  + ............+
T Consensus       240 ~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~--------g~--s-~~~a~~~~~~~~~  305 (467)
T PRK09556        240 ESTDMTKWQIFVEYVLKNP---VIWLLCFANIFLYIVRIGIDNWSPVYAFQEL--------GF--S-KEDAINTFTLFEI  305 (467)
T ss_pred             ccccCcHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CC--C-HHHHHHHHHHHHH
Confidence            0000000 000 1111111   112222222333333334333333 222110        00  1 0111122334556


Q ss_pred             hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH--HhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP--LVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      +.+++.+++|+++||+|||+..+............  .....+........+...++..+.....+....|.+|++.|++
T Consensus       306 ~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~  385 (467)
T PRK09556        306 GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGV  385 (467)
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHH
Confidence            77899999999999999988765543332222111  1111222222122222222222222223356679999999999


Q ss_pred             HHHHHHHHHhH-hHhHHHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHhhccc-cccc
Q 016515          321 GFGVASSLGKV-GGMVCPLVAVGLVT------------SCHLRLAVILFEVVFVLAIASSLLFP-FETM  375 (388)
Q Consensus       321 ~~~~~~~~~~i-~~~~~p~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~-pet~  375 (388)
                      +.|+.+.++++ |+.++|.+.+.+.+            ..+....+.++.++.+++.+..++.. .|++
T Consensus       386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  454 (467)
T PRK09556        386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVMEER  454 (467)
T ss_pred             HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997 66899999999888            33434455666666666655555432 4554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.88  E-value=2.2e-20  Score=181.94  Aligned_cols=344  Identities=19%  Similarity=0.254  Sum_probs=188.5

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.++++|++.|++.++. +....++.|+.|+++|++..+.....+.+|..+++.+...+.+.++||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            3566777888999999999999999998875 566788999999999999999999999999999999988888889999


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      +.|++..++.++.++.....||++++...+++.++..+..+...+. +++          ..  ..........   ...
T Consensus       175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~--~~~~~~~~~~---~~~  238 (496)
T PRK03893        175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRG-EHR----------II--NILLTLAAAA---ALW  238 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcc-hhH----------HH--HHHHHHHHHH---HHH
Confidence            9999877776666666677899887643322211111111000000 000          00  0000000000   000


Q ss_pred             ccccccccccch-------------hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCCCCCcccccCC
Q 016515          162 RKITDKLKSGFS-------------SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLTSKLSSGDNKCGSKVLHADK  227 (388)
Q Consensus       162 ~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  227 (388)
                      .......+..+.             ......+++.......+....+......+... +....+....        +.  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~--------g~--  308 (496)
T PRK03893        239 FCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDL--------GY--  308 (496)
T ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhc--------CC--
Confidence            000000000000             00000000000000011111111111111111 1122221110        00  


Q ss_pred             CCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhH-HHHHHHHHHHHhhhccccee
Q 016515          228 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAV-VTTVLLFGVRMCVTGTITVA  305 (388)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (388)
                      + ............++.+++.++.+++.||+|||+.++.+..+..+..+.+.. ..... ......+.......+..+..
T Consensus       309 ~-~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (496)
T PRK03893        309 D-PHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLL  387 (496)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhh
Confidence            0 111122334456677889999999999999999887766554443333222 22221 11112222212222333455


Q ss_pred             eeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHH-HHHHHHHhhccccc
Q 016515          306 TIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV-FVLAIASSLLFPFE  373 (388)
Q Consensus       306 ~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~pe  373 (388)
                      ..+..|.+|++.|+++.|+.+.++.+|+.++|.+.+.+.+..+....+...+++ .+++.+...+..|+
T Consensus       388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (496)
T PRK03893        388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS  456 (496)
T ss_pred             HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            668899999999999999999999999999999999888776654444444433 33333333333343

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.87  E-value=3e-20  Score=175.11  Aligned_cols=280  Identities=22%  Similarity=0.285  Sum_probs=167.9

Q ss_pred             hhhhhhhhhcCccHH--------HHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016515            3 TSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV   73 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~   73 (388)
                      ..++.++.++++++.        .++++|+++|++.|.. +....++.|+.|+++|++..+..+.+..+|.++++.+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883        75 MGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888876        4899999999998875 5667899999999999999999999999999998877654


Q ss_pred             Hh--------cccchHHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhh
Q 016515           74 VM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKE  145 (388)
Q Consensus        74 ~~--------~~~~WR~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
                      ..        +.++||+.|.+.++..++..+.+...||+|++...+++                ++.+            
T Consensus       155 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~------------  206 (394)
T TIGR00883       155 LSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------HKKK------------  206 (394)
T ss_pred             HHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------cccc------------
Confidence            32        35799999998887776666666678888754211100                0000            


Q ss_pred             hhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccc
Q 016515          146 NEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLH  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  224 (388)
                                             +   ...++.++++. +.........+.....++....+.+ .+.+..        +
T Consensus       207 -----------------------~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g  251 (394)
T TIGR00883       207 -----------------------R---GPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQTL--------G  251 (394)
T ss_pred             -----------------------c---CCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence                                   0   00111111111 1112222222222222222222222 111110        0


Q ss_pred             cCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHH-hh-h-chhHHHHHHHHHHHHhhhc
Q 016515          225 ADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL-LPL-VF-H-QSAVVTTVLLFGVRMCVTG  300 (388)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~-~~~-~~-~-~~~~~~~~~~~~~~~~~~~  300 (388)
                        .+ .........+..+...++.++.+++.||+|||+.+.....+..++. ... .. . .+.+..........++...
T Consensus       252 --~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  328 (394)
T TIGR00883       252 --LS-ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGM  328 (394)
T ss_pred             --CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence              01 1111122344556678888899999999999997765443333222 111 11 1 1222222222222222233


Q ss_pred             ccceeeeecccccccchhhHHHHHHHHHH-hHhHhHHHHHHHHhhcccc
Q 016515          301 TITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       301 ~~~~~~~~~~El~p~~~R~~~~~~~~~~~-~i~~~~~p~~~~~~~~~~~  348 (388)
                      ..+..+.+.+|.+|++.|+++.++.+.++ .+|+.++|.+.+.+.+..+
T Consensus       329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            44566788999999999999999976665 4678899999988877655

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=1.4e-19  Score=169.46  Aligned_cols=292  Identities=16%  Similarity=0.180  Sum_probs=174.7

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.++++|+++|++.|.. +....++.|+.| ++|++..+....+..+|..+++++.....+..+||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (377)
T TIGR00890        78 YGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVP  156 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHH
Confidence            4667788899999999999999999998865 455667888887 57999999999999999888777766666678999


Q ss_pred             HHHHHhhHHHHHHHHH-HhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           82 WLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +.|++.++..++..+. .++++|.|+-    .+               +++.         +.  ++.     +      
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~~~---------~~--~~~-----~------  195 (377)
T TIGR00890       157 AAFIYMGIIFLLVIVLGAFLIGYPPGQ----LI---------------KTNI---------EV--SVK-----D------  195 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHheecCchh----cc---------------ccCc---------cc--chh-----h------
Confidence            9999988877665443 4445554420    00               0000         00  000     0      


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY-GAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                                  ...++.++++.....   ....+...+... ......+... +.        +  .+ +........+
T Consensus       196 ------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~--------~--~~-~~~~~~~~~~  248 (377)
T TIGR00890       196 ------------YTVWEMLRTPQFWVL---YLSFFLNAVSGLLLIGLYKPYGQ-SL--------G--LS-DGFLVLAVSI  248 (377)
T ss_pred             ------------hhHHHHHcCccHHHH---HHHHHHHhHHHHHHHHHHHHHHH-Hc--------C--CC-HHHHHHHHHH
Confidence                        001111221111111   111111111111 1111111111 00        0  01 1111222344


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch-h-HHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-A-VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ..+..+++.++.+++.||+|||+.+..+..+..+..+.+..... . .......+...+......+....+.+|.+|++.
T Consensus       249 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  328 (377)
T TIGR00890       249 SSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN  328 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh
Confidence            56677889999999999999999887776665554444333221 1 111111122222222333455678899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  363 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~  363 (388)
                      |+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++.+++
T Consensus       329 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       329 SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999988877655455555555554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.86  E-value=1.4e-19  Score=174.93  Aligned_cols=314  Identities=14%  Similarity=0.190  Sum_probs=174.0

Q ss_pred             hhhhhhhhc--CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 016515            4 SVAGLLSSF--SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-LN   79 (388)
Q Consensus         4 ~i~~~l~~~--~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~   79 (388)
                      +++++++.+  .++++.+++.|+++|++.|.. +....++.|+.|+++|++..++...+..+|..+++++...+... .+
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       117 SVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            444555433  356888999999999999975 67778999999999999999999999999999999998887777 49


Q ss_pred             hHHHHHHhhHHHHHHHHHH-hcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccc
Q 016515           80 WRWLLAFSSVPSFALLLFY-GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHML  158 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~~-~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      ||+.|++.++++++..+.+ ...+|+|+..   .+.++.++  +.+....                        +++   
T Consensus       197 w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~--~~i~~~~------------------------~~~---  244 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEK--KYINSSL------------------------QGQ---  244 (465)
T ss_pred             CCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHH--HHHHhhc------------------------ccc---
Confidence            9999999998887765544 4467888521   11111100  0000000                        000   


Q ss_pred             cccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHH
Q 016515          159 SMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVF  238 (388)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                          +.+.+   ....++..++.+.   ........+.....++....+.+.+..+       ..+.  +. ........
T Consensus       245 ----~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~l~~-------~~g~--s~-~~~g~~~~  304 (465)
T TIGR00894       245 ----KGSTR---QSLPIKAIPKSLP---VWAIWFAIFGHFWLYTILPTYLPTFISW-------VLRV--SG-KENGLLSS  304 (465)
T ss_pred             ----cCCCC---CCCCHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCc--Ch-HHhHHHHH
Confidence                00000   0012333333221   1122222333333333333232222110       0001  11 11112233


Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHH--------HHHHHH--HHHHHHHHHhh-hchhHHHHHHHHHHHHhhhcccceeee
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLS--------MVLMFV--SACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATI  307 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~--------~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (388)
                      +..++..++.+++|++.||++||+.        +..+..  +.+++.+.... .........++....++..+..+..+.
T Consensus       305 ~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  384 (465)
T TIGR00894       305 LPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLI  384 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhh
Confidence            4566778899999999999865421        111111  11111111111 112222222222222222222333445


Q ss_pred             ecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc--c-hhHHHHHHHHHHHHHHHHhhcc
Q 016515          308 YAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--H-LRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       308 ~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ...|..|. .++++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.++..+++.++..+.
T Consensus       385 ~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       385 NSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             chhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            56677765 8999999999999999999999988776542  2 2344555666666666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=3.4e-19  Score=171.44  Aligned_cols=322  Identities=14%  Similarity=0.164  Sum_probs=170.1

Q ss_pred             hhhhhhhhcC----ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHH-HHHHHHHHhcc
Q 016515            4 SVAGLLSSFS----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIF-EASLAWVVMTR   77 (388)
Q Consensus         4 ~i~~~l~~~~----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~-~~~l~~~~~~~   77 (388)
                      +++.++.+++    .+++.++++|++.|++.|.. +.....+.|++|+++||+..++.+.+..+|..+ ++++.......
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            4445555554    47888999999999988764 556667889999999999999999988888644 44433333334


Q ss_pred             cchHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccc
Q 016515           78 LNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH  156 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
                      .+||+.|++.+++.++. .+..+++||+|+....+ +.+|.+       .    +.+          +..+.++      
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-------~----~~~----------~~~~~~~------  235 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYK-------N----DYP----------DDYNEKH------  235 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhh-------h----ccc----------ccccccc------
Confidence            59999999988776654 45567789988642111 000000       0    000          0000000      


Q ss_pred             cccccccccccccccchhh-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCCCCCCcccccCCCCCchhH
Q 016515          157 MLSMTRKITDKLKSGFSSF-FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSK-LSSGDNKCGSKVLHADKSKDNSLY  234 (388)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  234 (388)
                               ++++.....+ +..++.+.   .....+..+.....+++...+.+. +.+..+        .. ..+.  .
T Consensus       236 ---------~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g--------~s-~~~~--~  292 (452)
T PRK11273        236 ---------EQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEVKH--------FA-LDKS--S  292 (452)
T ss_pred             ---------CCCccHHHHHHHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CC-HHHH--H
Confidence                     0000000000 11111111   111111212222222333322222 221100        00 0111  1


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHh--chhHHHHH-HHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhcccceeeeec
Q 016515          235 VDVFIASLAELPGLILSAIIVDKI--GRKLSMVL-MFVSACIFLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYA  309 (388)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (388)
                      ....+..++.+++.++.|+++||+  |||..... ......+..+.+..  ...........+....+..+.......+.
T Consensus       293 ~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  372 (452)
T PRK11273        293 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHA  372 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            123345566788999999999999  55543222 11111111111111  11111122222222222222222234567


Q ss_pred             ccccccchhhHHHHHHHHHHhHhHhH-HHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc-cccccC
Q 016515          310 PEIYPTSARTTGFGVASSLGKVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF-PFETMG  376 (388)
Q Consensus       310 ~El~p~~~R~~~~~~~~~~~~i~~~~-~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~pet~~  376 (388)
                      .|.+|++.|+++.|+.+..+++|+.+ +|.+.+.+.+..+....+.+..++++++.+.+... .+|+|+
T Consensus       373 ~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        373 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             HHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            89999999999999999999998765 79888888887665666666777666665555533 345443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.85  E-value=6.8e-19  Score=166.27  Aligned_cols=302  Identities=13%  Similarity=0.101  Sum_probs=182.7

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-LN   79 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~   79 (388)
                      +.+++++++++++|++.++++|+++|++.|.. +....++.|+.| ++|+++++....+...|..+++.++..+.+. .+
T Consensus        83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~  161 (393)
T PRK09705         83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET  161 (393)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35778889999999999999999999998875 455667889887 7899999999998888999988887776655 48


Q ss_pred             hHHHHHHhhHHHHHHHHHHhcCC-CCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccc
Q 016515           80 WRWLLAFSSVPSFALLLFYGLAP-ESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHML  158 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~~~~~p-ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      ||..+.+.+++.++....++... +.|+         +              + +            ++.     .    
T Consensus       162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--------------~-~------------~~~-----~----  196 (393)
T PRK09705        162 WYQTLAWWALPAVVALFAWWWQSAREVA---------S--------------S-H------------KTT-----T----  196 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc---------c--------------c-c------------CCC-----c----
Confidence            99988776666554433332211 1110         0              0 0            000     0    


Q ss_pred             cccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHH
Q 016515          159 SMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVF  238 (388)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                                 ..   .+.+++++.+    .+....+...+.+++...+.+.+..+.+          .+.+ .......
T Consensus       197 -----------~~---~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~lp~~l~~~g----------~s~~-~ag~~~~  247 (393)
T PRK09705        197 -----------TP---VRVVFTPRAW----TLGVYFGLINGGYASLIAWLPAFYIEIG----------ASAQ-YSGSLLA  247 (393)
T ss_pred             -----------CC---cccccCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CChh-hhhHHHH
Confidence                       00   0001112111    1111222222333333332222211110          0111 1112234


Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHhhhcccceeeeeccccc-ccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY-PTS  316 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~-p~~  316 (388)
                      +..++.++|.++.+++.||.|||+....+..+..+....+. ...+.....  .....+.....++.......+.+ |++
T Consensus       248 ~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~  325 (393)
T PRK09705        248 LMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA  325 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH
Confidence            55677889999999999999999888776655444333322 222211111  11111222233344444555666 468


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHhhcccccccCcchh
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFPFETMGRELK  380 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~  380 (388)
                      .|+++.|+.+.++.+++.++|.+.+.+.+..+. ...+.+..+++++..++.+..+|||.+|..-
T Consensus       326 ~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK09705        326 IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence            899999999999999999999999998887553 3445555666677777777788999887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.85  E-value=6.2e-19  Score=166.99  Aligned_cols=287  Identities=12%  Similarity=0.074  Sum_probs=172.3

Q ss_pred             cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHHH
Q 016515           15 NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA   93 (388)
Q Consensus        15 ~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l~   93 (388)
                      +++.+++.|+++|++.+.. +....++.|+.|+++|++..+..+.....|.++++.++..+.+..+||..+++..+..++
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            5678999999999998875 566778899999999999999999999999999999988888889999998877665554


Q ss_pred             HHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccch
Q 016515           94 LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFS  173 (388)
Q Consensus        94 ~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (388)
                      ..+.....||++.    + + ++                         +   .                           
T Consensus       191 ~~~~~~~~~~~~~----~-~-~~-------------------------~---~---------------------------  209 (399)
T PRK05122        191 GLLLARPRPAVPP----V-K-GE-------------------------R---L---------------------------  209 (399)
T ss_pred             HHHHHhcCCCCCC----C-C-cc-------------------------c---h---------------------------
Confidence            4433333343221    0 0 00                         0   0                           


Q ss_pred             hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHH
Q 016515          174 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAI  253 (388)
Q Consensus       174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (388)
                      ++++.++ +.++.......    ..+.+.....+.+....+.+        .  . ...  .......++.+++.++.++
T Consensus       210 ~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~--~-~~~--~~~~~~~~~~~~~~~~~g~  271 (399)
T PRK05122        210 PFRRVLG-RVWPYGMGLAL----ASIGFGTIATFITLYYAARG--------W--D-GAA--LALTLFGVAFVGARLLFGN  271 (399)
T ss_pred             hHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcc--------c--c-cch--HHHHHHHHHHHHHHHHHHH
Confidence            0000000 00110000000    11111111111111100000        0  0 111  1223445667788899999


Q ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhH
Q 016515          254 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGG  333 (388)
Q Consensus       254 l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~  333 (388)
                      +.||+|||+.+..+..+..+....+....+.+......+...++....++.......|.+|++.|+++.|+.+....+|+
T Consensus       272 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        272 LINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999988766655554444333333322222222222222222333334556789999999999999999999999


Q ss_pred             hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515          334 MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD  381 (388)
Q Consensus       334 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~  381 (388)
                      .++|.+.+.+.+..+....+.+.+++.+++.+..++. +++++|+.+|
T Consensus       352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  398 (399)
T PRK05122        352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccccCCC
Confidence            8888888887776665566666667777776666554 5566665554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.85  E-value=1.2e-18  Score=163.53  Aligned_cols=292  Identities=16%  Similarity=0.177  Sum_probs=171.6

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhH--HHHHHHHHHHHHHHHHHHHHHHhcccch
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW--MVALSAFWTAGTIFEASLAWVVMTRLNW   80 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~~~~~~l~~~~~~~~~W   80 (388)
                      .++.++.+++++++.+++.|+++|.+.+.. |....+..|+.|++.|++.  .+.......+|..++++++..+.+..+|
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~  154 (375)
T TIGR00899        75 ALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF  154 (375)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence            345667788999999999999998776654 5666778899888877643  5677778889999999998888778899


Q ss_pred             HHHHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           81 RWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      |+.|++.+++.++..+ .++++||+|+....     +              + .          + .+            
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------------~-~----------~-~~------------  191 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPG-----A--------------L-T----------R-LE------------  191 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCccc-----c--------------c-C----------c-ch------------
Confidence            9999998887665544 45568987742100     0              0 0          0 00            


Q ss_pred             ccccccccccccchhhhhhc-chhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFS-YYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDV  237 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                                     .+..+ +++.+.........+...... .+...+......            .  + ........
T Consensus       192 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~--~-~~~~g~~~  241 (375)
T TIGR00899       192 ---------------VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELG------------L--P-DKLAGLMM  241 (375)
T ss_pred             ---------------hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcC------------C--C-HHHHHHHH
Confidence                           00001 111111111111111111111 111111111110            0  0 01111112


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .......+++.++.+++.||+|||+.+..+..+..+.........+.+..........++.....+....+..|..|.+ 
T Consensus       242 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-  320 (375)
T TIGR00899       242 GTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-  320 (375)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-
Confidence            2223445677888999999999999887766554444333333222222222222222222222344556778988875 


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  369 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  369 (388)
                      |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+...+
T Consensus       321 ~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       321 AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            5699999999999999999999998877665555666666666666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.84  E-value=8.3e-19  Score=168.11  Aligned_cols=323  Identities=15%  Similarity=0.157  Sum_probs=173.7

Q ss_pred             hhhhhhhhcC----ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 016515            4 SVAGLLSSFS----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM-TR   77 (388)
Q Consensus         4 ~i~~~l~~~~----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-~~   77 (388)
                      +++.++.+++    ++++.+.+.|++.|++.|.. +....++.|++|+++||+..++.+....+|..+++.+..... ..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            3444444443    56788899999999998865 556678899999999999999999999999988887655433 34


Q ss_pred             cchHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccc
Q 016515           78 LNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH  156 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
                      .+||..|++.++..++. ++.++++||+|+....+ +.++.         ++  +.++       +...++     ++  
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~---------~~--~~~~-------~~~~~~-----~~--  235 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEY---------RN--DYPD-------DYNEKA-----EQ--  235 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhc---------cc--cccc-------cccccc-----cc--
Confidence            69999999988876664 45566689988632100 00000         00  0000       000000     00  


Q ss_pred             cccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHH
Q 016515          157 MLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD  236 (388)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (388)
                            +  .+.++.  ..+..++.+...   ......+.....+++...+.+.+..+.  .     +  .+. ....+.
T Consensus       236 ------~--~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~l~~~--~-----g--~s~-~~~~~~  292 (438)
T TIGR00712       236 ------E--LTAKEI--FMQYVLPNKLLW---YIAIANVFVYLLRYGVLDWSPTYLKEV--K-----H--FAL-DKSSWA  292 (438)
T ss_pred             ------c--cchHHH--HHHHHccCchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHc--c-----C--CCh-hhHHHH
Confidence                  0  000000  001122211111   111111111122222222222221100  0     0  010 111122


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHH--H-HHHHHHhhh--chhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA--C-IFLLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+..+..+++.++++++.||++||+....+....  . +..+.+...  .+........+...+...+..........|
T Consensus       293 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  372 (438)
T TIGR00712       293 YFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALE  372 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34456667889999999999996433222222111  1 111111111  111211122222222211211122345789


Q ss_pred             ccccchhhHHHHHHHHHHhHhH-hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          312 IYPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~-~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .+|++.|+++.|+.+.++++++ .++|.+.+.+.+..+....+.+..+..+++.+..++..||.|
T Consensus       373 ~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       373 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999876 578999998888666556666667767777777777777765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.83  E-value=1.3e-18  Score=168.14  Aligned_cols=304  Identities=12%  Similarity=0.035  Sum_probs=161.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH----hc--
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV----MT--   76 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~----~~--   76 (388)
                      .+++.+++++++++..+++.|+++|++.+.......++.|++|+++||+..++......+|..+++.+...+    ..  
T Consensus       111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356677788899999999999999998876544445789999999999999998766666666654443222    11  


Q ss_pred             ---ccchHHHHHHhhHHHHHHHHHHhcCC-CCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhh
Q 016515           77 ---RLNWRWLLAFSSVPSFALLLFYGLAP-ESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLL  152 (388)
Q Consensus        77 ---~~~WR~~f~~~~i~~l~~~~~~~~~p-ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (388)
                         ..|||+.|++.+++.++..+..++++ +.|+     ++.++.+       + +. +              .+     
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~-~~-~--------------~~-----  237 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K-SG-T--------------MP-----  237 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h-cC-c--------------cc-----
Confidence               25899999998888776554444443 4442     1100000       0 00 0              00     


Q ss_pred             hccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCCCcccccCCCCCc
Q 016515          153 RDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT-SKLSSGDNKCGSKVLHADKSKDN  231 (388)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  231 (388)
                       +              +.....++..++.+   +.+.++..++......+....+. ..+....        +  .+. .
T Consensus       238 -~--------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--------g--~s~-~  288 (476)
T PLN00028        238 -K--------------DSFSKVLRYGVTNY---RTWILALTYGYSFGVELTMDNIIAEYFYDRF--------G--LSL-E  288 (476)
T ss_pred             -c--------------ccHHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhc--------C--CCH-H
Confidence             0              00000111111111   11222222222222222222221 2221100        0  010 1


Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccce
Q 016515          232 SLYVDVFIASLAELPGLILSAIIVDKIGRKL-------SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITV  304 (388)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (388)
                      .......+.+++.+++.+++|+++||+|||+       .......+.++..+.+....+........+...++.....+.
T Consensus       289 ~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  368 (476)
T PLN00028        289 TAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGA  368 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhh
Confidence            1122234456777889999999999998762       222222222222222222222222222222222222233345


Q ss_pred             eeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          305 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       305 ~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .+.+.+|+.| +.|+++.|+.+..+.+|+.++|++.. ..+..+....+.+.+++.+++.++.++.
T Consensus       369 ~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        369 TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6667777755 68999999999999999999887654 1122223445666666777766655544

>PRK03699 putative transporter; Provisional

Probab=99.83  E-value=2.3e-18  Score=162.74  Aligned_cols=305  Identities=13%  Similarity=0.139  Sum_probs=178.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cccch
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM-TRLNW   80 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-~~~~W   80 (388)
                      ..++.++.+++++++.+++.|+++|++.|.. +....++.|+.|+++|++..+..+..+.+|..+++.+...+. +..+|
T Consensus        82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            3566778888999999999999999998864 566778899999999999998888888888888887766554 46799


Q ss_pred             HHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           81 RWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      |+.|.+.+++.++..++.++ .+.|+.  .+.+                 +              ++.    ++      
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-----------------~--------------~~~----~~------  197 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-----------------P--------------KAD----KP------  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-----------------c--------------ccc----Cc------
Confidence            99999888776655443322 222310  0000                 0              000    00      


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                           . .+.       .+++    .........+.....+++...+.+.+.++.       .+.. ..+...  .....
T Consensus       198 -----~-~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------~g~s-~~~~~~--~~~~~  250 (394)
T PRK03699        198 -----V-AKE-------KWGI----GVLFLAIAALLYILAQLTFISWVPEYAQKK-------FGMS-LEDAGN--LVSNF  250 (394)
T ss_pred             -----c-ccc-------cCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCC-hHHhhH--HHHHH
Confidence                 0 000       0011    111122222222223333333322221100       0000 001111  12233


Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      .++..+|.++.+++.||++||+.+.....+..+....+....+........+...++..+.++....+..|..|.+ +++
T Consensus       251 ~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~  329 (394)
T PRK03699        251 WMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPK  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHH
Confidence            4567889999999999999999887665554443333333222222222222333333334455555667777644 678


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchh
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELK  380 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~  380 (388)
                      ..+.....+.+|+.++|.+.+.+.+..+....++...++.+++.+...+ .+++.+|.++
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  388 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL-LGFVSKHRQH  388 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            8899999999999999999998887766555666666666555544333 4566555444

>PRK12382 putative transporter; Provisional

Probab=99.82  E-value=8e-18  Score=159.00  Aligned_cols=277  Identities=16%  Similarity=0.083  Sum_probs=167.7

Q ss_pred             ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHH
Q 016515           14 PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF   92 (388)
Q Consensus        14 ~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l   92 (388)
                      ++++.++++|+++|++.+.. +....++.|+.|+++|+++.+..+.+...|..++++++..+.+..+||..+.+..+..+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  189 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL  189 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            57889999999999998864 55667889999999999999999999999999999998888788899998877655444


Q ss_pred             HHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccc
Q 016515           93 ALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGF  172 (388)
Q Consensus        93 ~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
                      +.+......||.|.    + +  +             ++              .+.    +                   
T Consensus       190 ~~~~~~~~~~~~~~----~-~--~-------------~~--------------~~~----~-------------------  212 (392)
T PRK12382        190 LAWAFNGTVRKVPA----H-A--G-------------ER--------------PSL----W-------------------  212 (392)
T ss_pred             HHHHHHHhccCCCC----C-c--c-------------cC--------------chH----H-------------------
Confidence            43333333344321    0 0  0             00              000    0                   


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHH
Q 016515          173 SSFFMLFSRKLIRTTLLLWVLFFAN-VFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILS  251 (388)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
                      +..+.++.+     ........... ....+...    .+.+.         +  .+ +.  .......+++.+++.++.
T Consensus       213 ~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~----~~~~~---------~--~~-~~--~~~~~~~~~~~~~~~~~~  269 (392)
T PRK12382        213 SVVGLIWKP-----GLGLALQGVGFAVIGTFVSL----YFASK---------G--WA-MA--GFTLTAFGGAFVLMRVLF  269 (392)
T ss_pred             HHHHHHHHh-----HHHHHHHHHHHhHHHHHHHH----HHHhc---------C--Cc-hh--HHHHHHHHHHHHHHHHHH
Confidence            000001111     11100000000 11111111    11100         0  00 11  112233455667888999


Q ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhH
Q 016515          252 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV  331 (388)
Q Consensus       252 ~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i  331 (388)
                      +++.||+|||+.+..+..+..+..+.+....+.+..........++.....+.......|.+|++.|+++.|+.+....+
T Consensus       270 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  349 (392)
T PRK12382        270 GWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI  349 (392)
T ss_pred             HHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            99999999998887766555444443333322222222222222222222344455678899999999999999999999


Q ss_pred             hHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          332 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       332 ~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ++.++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus       350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999988887666666777777777766655544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.82  E-value=1.1e-17  Score=162.04  Aligned_cols=298  Identities=16%  Similarity=0.153  Sum_probs=177.0

Q ss_pred             hhhhhhcC---ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccch
Q 016515            6 AGLLSSFS---PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-RLNW   80 (388)
Q Consensus         6 ~~~l~~~~---~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-~~~W   80 (388)
                      +....++.   ++++.+.+.|++.|++.+.. +...++..|++|+++||+..++.+.++.+|.++++.+...+.+ .+||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            33444554   46888999999999987754 5667899999999999999999999999999999988888777 5799


Q ss_pred             HHHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccc
Q 016515           81 RWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM  160 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      |..|++.++..++..+..++.||+|+.-    +.++                         ..+ +.             
T Consensus       174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~-------------------------~~~-~~-------------  210 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLLAPEPTDTI----PVPK-------------------------TLE-QA-------------  210 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccc----cccc-------------------------chh-hh-------------
Confidence            9999998887777666666688876310    0000                         000 00             


Q ss_pred             cccccccccccchhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHH-HH
Q 016515          161 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLF-FANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD-VF  238 (388)
Q Consensus       161 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  238 (388)
                                ....++++++++...........+ ......   .....+.+....        +.  +. ...... ..
T Consensus       211 ----------~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~---~~~~~~~l~~~~--------G~--s~-~~~g~~~~~  266 (491)
T PRK11010        211 ----------VVAPLRDFFGRNNAWLILLLIVLYKLGDAFA---MSLTTTFLIRGV--------GF--DA-GEVGLVNKT  266 (491)
T ss_pred             ----------HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc--------CC--CH-HHHHHHHHH
Confidence                      000122223222111111111111 111111   111122211100        00  11 111111 12


Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH---HhhhchhHHHHH-HHHHHHHhhhcccceeeeecccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP---LVFHQSAVVTTV-LLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ...++.++|.+++|+++||+|||+.+..+.++.++..+.   +....+...... ..+...++.....+..+.+..++.|
T Consensus       267 ~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~  346 (491)
T PRK11010        267 LGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN  346 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334567899999999999999988766554433332221   112212221111 1111111111122345678889999


Q ss_pred             cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          315 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       315 ~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ++.+++..|+.+++..+|+.+++.+.+.+.+..+....+.+..++++++.+..++.
T Consensus       347 ~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        347 KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888888887665556666777777776666654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.82  E-value=1.1e-17  Score=154.92  Aligned_cols=274  Identities=23%  Similarity=0.345  Sum_probs=187.8

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++..++++++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (352)
T cd06174          74 FALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR  153 (352)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3456667777899999999999999999875 667789999999999999999999999999999999998888778899


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      +.+++.+++.++..+...+++  |++                                                      
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~--~~~------------------------------------------------------  177 (352)
T cd06174         154 WLFLILAILGLLLALLLLFLL--RLL------------------------------------------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHH------------------------------------------------------
Confidence            999998887766555443332  100                                                      


Q ss_pred             ccccccccccchhhhhhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA-NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                                            +............ .....+...+......               .++..........
T Consensus       178 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  220 (352)
T cd06174         178 ----------------------LLLALAFFLLSFGYYGLLTYLPLYLQEVLG---------------LSAAEAGLLLSLF  220 (352)
T ss_pred             ----------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHH
Confidence                                  0000000000011 1111111111111000               0111122334556


Q ss_pred             HhhhhHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhh
Q 016515          241 SLAELPGLILSAIIVDKIGRKL-SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      .+...++.++.+++.||+|||+ .+..+..+..+..+......+.+......+...++.....+....+..|..|++.|+
T Consensus       221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T cd06174         221 GLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG  300 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence            6778889999999999999999 887777666665554444333333333333333444455567788999999999999


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  369 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  369 (388)
                      +..|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus       301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            99999999999999999999998877656566677777777777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.82  E-value=4.4e-18  Score=158.72  Aligned_cols=277  Identities=15%  Similarity=0.109  Sum_probs=168.5

Q ss_pred             hhhhhhhhcCc-----cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016515            4 SVAGLLSSFSP-----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR   77 (388)
Q Consensus         4 ~i~~~l~~~~~-----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~   77 (388)
                      +++.++.++++     +++.++++|+++|++.+.. +...+++.|+.|+++|++..+..+....+|.++++.++..+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~  154 (365)
T TIGR00900        75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT  154 (365)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666     9999999999999998865 66778999999999999999999999999999999998888888


Q ss_pred             cchHHHHHHhhHHHHHHHHHHhc--CCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcc
Q 016515           78 LNWRWLLAFSSVPSFALLLFYGL--APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT  155 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~~~~~~~--~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (388)
                      .+||+.|++.++..++..+....  .||.++    +++ +               +           .+++..++     
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~---------------~-----------~~~~~~~~-----  198 (365)
T TIGR00900       155 LGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI-Q---------------A-----------LSNAVLRD-----  198 (365)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc-c---------------c-----------cchhHHHH-----
Confidence            89999999887766554433322  333221    000 0               0           00000000     


Q ss_pred             ccccccccccccccccchhhhhhcchhHHHHHHHHHHHH-HHHH-HH-HHHHHHHhhhhcCCCCCCCCcccccCCCCCch
Q 016515          156 HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLF-FANV-FS-YYGAVLLTSKLSSGDNKCGSKVLHADKSKDNS  232 (388)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (388)
                                     ....++.+++++..+......... +... .. .+...+....+.              .+ ...
T Consensus       199 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~  248 (365)
T TIGR00900       199 ---------------TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLG--------------RG-STH  248 (365)
T ss_pred             ---------------HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC--------------Cc-hHH
Confidence                           000122233333222222211111 1111 11 111111111110              00 111


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          233 LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      .........++.+++.++.+++.||.|||+.+..+..+.++.........+ .+......+...++.....+....+..|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  328 (365)
T TIGR00900       249 YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQR  328 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122234456667888999999999999999887766555554444433322 2222222222223333334556778999


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      ..|++.|+++.|+.+.+..+++.++|.+.+.+.+.
T Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       329 RVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.81  E-value=1.5e-18  Score=162.55  Aligned_cols=296  Identities=17%  Similarity=0.244  Sum_probs=164.6

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHH-HHHHHhcccch
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEAS-LAWVVMTRLNW   80 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~-l~~~~~~~~~W   80 (388)
                      .+++.++.+++++++.++++|+++|++.|.. +...+++.|+.|+++|++..++.+....+|..++++ ++.......+|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        70 CAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence            4567778888999999999999999998875 677789999999999999999999999999999984 55556667899


Q ss_pred             HHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           81 RWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        81 R~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      |+.|++.++..++. .+...+.||+|+..   ++.++.             +.++      .+.+.++++    +     
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~------~~~~~~~~~----~-----  198 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPAE-------------EMPN------EEPDGDAEK----K-----  198 (379)
T ss_pred             hhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCccc-------------cCcc------ccccccccc----c-----
Confidence            99998887766554 44556678877521   100000             0000      000000000    0     


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccccCCCCCchhHHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLHADKSKDNSLYVDVF  238 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
                       +    ++.+......+.+++.+....   +.+..+.......+...+.+ .+.+..        +  .+. ........
T Consensus       199 -~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g--~~~-~~~~~~~~  259 (379)
T TIGR00881       199 -E----EELTKKQIFLQYVLLNKVLWY---ISLGYVFVYVVRTGILDWSPLYLTQEK--------G--FSK-EKASWAFT  259 (379)
T ss_pred             -c----ccccchHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh--------C--CCH-HHHHHHHH
Confidence             0    000000011222222221111   11111111111111111111 111000        0  011 11112234


Q ss_pred             HHHhhhhHHHHHHHHHHHHhc-hhHHHHH-HHHHHHHH-HHHHhh-hc-hhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          239 IASLAELPGLILSAIIVDKIG-RKLSMVL-MFVSACIF-LLPLVF-HQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~g-Rr~~~~~-~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      ...+..+++.++.+++.||.+ ||+..+. ........ ...... .. +........+...++..+.....+.+..|.+
T Consensus       260 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  339 (379)
T TIGR00881       260 LYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELA  339 (379)
T ss_pred             HHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence            456677889999999999864 3332222 11111111 111111 11 1111112222222223333344567789999


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~  348 (388)
                      |++.|+++.|+.+.++.+++.++|.+.+.+.+..+
T Consensus       340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            99999999999999999999999999998877544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.81  E-value=8.7e-18  Score=163.26  Aligned_cols=320  Identities=14%  Similarity=0.168  Sum_probs=175.1

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..+++++++++++++.++++|+++|++.|.. +....++.|++|+++|++..++......+|..+++.++..+.+.++||
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence            4667788889999999999999999998875 677789999999999999999999999999999999988888889999


Q ss_pred             HHHHHhhHHHHHHH-HHHhcCCCCchHHHhccChHHHHHHHHHH-------HHhcCCCCCCCccccchhhhhhhhchhhh
Q 016515           82 WLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKM-------AFVNQTKLPPGILVSDKAIKENEESNLLR  153 (388)
Q Consensus        82 ~~f~~~~i~~l~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (388)
                      +.|++.+.++++.. +..+..||+++  ..+++.|.....+...       ....+++..  . ..+.............
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~  231 (485)
T TIGR00711       157 WIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERG--W-FDSNEILILSITGLVA  231 (485)
T ss_pred             ehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCC--C-CCchHHHHHHHHHHHH
Confidence            99999887766543 34455777543  1122222221111100       000000000  0 0000000000000000


Q ss_pred             ccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh
Q 016515          154 DTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL  233 (388)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (388)
                      -.  .....+  .+.+.+....+.+.+++.....+..    +...+.+++...+.+.+..+.       .+  .+ ....
T Consensus       232 ~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~-------~g--~s-~~~~  293 (485)
T TIGR00711       232 II--AFVVWE--LTDDNPLVDLRLFKYRNFTIGCVYM----SLLGLGLYGSFYLLPLYLQQV-------LG--YT-ALQA  293 (485)
T ss_pred             HH--HHHHHH--HcCCCCccCHHHHcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHh-------cC--CC-HHHH
Confidence            00  000000  0001111112222223322222111    112222222222222111000       00  01 1111


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh--h-hc-hhHHHHHHHHHHHHhhhcccceeeeec
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV--F-HQ-SAVVTTVLLFGVRMCVTGTITVATIYA  309 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (388)
                      ........++.+++.++.+++.||+|||+.+..+..+..+....+.  . .. +........+...++.....+......
T Consensus       294 g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~  373 (485)
T TIGR00711       294 GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIA  373 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223445667788999999999999999988777665554444333  1 11 112112222222222222222334455


Q ss_pred             ccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          310 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       310 ~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      .|.+|++.|+++.|+.+.+..+|+.+++.+.+.+.+
T Consensus       374 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       374 LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999999999988877665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.81  E-value=4.7e-17  Score=153.77  Aligned_cols=297  Identities=13%  Similarity=0.148  Sum_probs=162.8

Q ss_pred             hhhhhhhhcCccHHHHHHHH-HHhhccCcchhhHHHHHHhhcccCch--hhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 016515            4 SVAGLLSSFSPNYVSLVIFR-CFVGVGLGGVPVFLAYFLEFVPVSHR--GRWMVALSAFWTAGTIFEASLAWVVMTRLNW   80 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R-~l~G~~~g~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~~~~~l~~~~~~~~~W   80 (388)
                      +++..+.+++++++++++.+ ++.|.+....+....+..|+.|++.|  +...+..+....+|.+++++++..+.+..||
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw  172 (393)
T PRK15011         93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSF  172 (393)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCh
Confidence            34455667888998876555 44555443345666777888877666  4556788888999999999999888878899


Q ss_pred             HHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           81 RWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        81 R~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      |..|+..++..++. ...+.++||+|+-   +++  +                + .        +.+..           
T Consensus       173 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~----------------~-~--------~~~~~-----------  211 (393)
T PRK15011        173 TVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL--A----------------T-G--------TLEAP-----------  211 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc--c----------------c-c--------ccccc-----------
Confidence            99999888776655 3445667886530   000  0                0 0        00000           


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                            .++           .++.+.........+... .. +. ......+.+..        +  .+. ........+
T Consensus       212 ------~~~-----------~~~~~~~~~~~~~~~~~~-~~-~~-~~~p~~l~~~~--------~--~~~-~~~g~~~~~  260 (393)
T PRK15011        212 ------RRN-----------RRDTLLLFVICTLMWGTN-SL-YI-INMPLFIINEL--------H--LPE-KLAGVMMGT  260 (393)
T ss_pred             ------ccc-----------cccHHHHHHHHHHHHHHH-HH-HH-HHHHHHHHHHc--------C--CCH-HHHHHHHHH
Confidence                  000           001111111111111111 10 10 11111111100        0  010 111111223


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhh
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  319 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  319 (388)
                      ..+..+++.++.|++.||+|||+.+..+.....+........++.+......+...++.....+....+..|.+|.+ |+
T Consensus       261 ~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g  339 (393)
T PRK15011        261 AAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AG  339 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cc
Confidence            34456778899999999999999776655444333322222222222222111111111111223345678999975 99


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      ++.++.+...++|+.++|.+.+.+.+..+....+.+..++.+++.+..++ .|||
T Consensus       340 ~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  393 (393)
T PRK15011        340 SATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR-IKDV  393 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence            99999999999999999999998877655445555555666666555554 3554

>PRK10504 putative transporter; Provisional

Probab=99.80  E-value=4.9e-17  Score=157.42  Aligned_cols=311  Identities=15%  Similarity=0.124  Sum_probs=169.4

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      +++.++.+++++++.++++|+++|++.|.. +....++.|+.|+++|++..+.......+|..+++.++..+.+..+||+
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~  165 (471)
T PRK10504         86 TLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW  165 (471)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence            456667788999999999999999999875 6677888999999999999999999999999999999888888889999


Q ss_pred             HHHHhhHHHHHHH-HHHhcCCCCchHHHhccChHHHHHHHHHHH------HhcCCCCCCCccccchhhhhh------hhc
Q 016515           83 LLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMA------FVNQTKLPPGILVSDKAIKEN------EES  149 (388)
Q Consensus        83 ~f~~~~i~~l~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~  149 (388)
                      .|.+......+.. ......||++.   ++.|.|.+...+....      ..++.+.. ..  .......-      ...
T Consensus       166 ~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  239 (471)
T PRK10504        166 IFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGL-GL--SPLAIAGLVAVGVVALL  239 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcC-Cc--chHHHHHHHHHHHHHHH
Confidence            9988765544433 33344565442   2223332221111100      00010000 00  00000000      000


Q ss_pred             hhhhccccccccccccccccccchhhhhhcchhHHHHHHHH-HHHHHHHHHHHH-HHHHHhhhhcCCCCCCCCcccccCC
Q 016515          150 NLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLL-WVLFFANVFSYY-GAVLLTSKLSSGDNKCGSKVLHADK  227 (388)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (388)
                      ....++          .+.+++....+ +++++.....+.. .+.++.....++ ...++.....              .
T Consensus       240 ~~~~~~----------~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--------------~  294 (471)
T PRK10504        240 LYLLHA----------RNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLG--------------F  294 (471)
T ss_pred             HHHHHH----------hcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------C
Confidence            000000          00001111222 2332222222221 111111111111 1112211111              0


Q ss_pred             CCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--chhHH-HHHHHHHHHHhhhcccce
Q 016515          228 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVV-TTVLLFGVRMCVTGTITV  304 (388)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~  304 (388)
                      + ............+..+++..+.+++.||+|||+.+..+..+..+....+...  .+... .....+....+....++.
T Consensus       295 ~-~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  373 (471)
T PRK10504        295 S-PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSS  373 (471)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0111122233344556666889999999999998887766555544433321  12111 111111111222223344


Q ss_pred             eeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          305 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       305 ~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      ...+..+..|.+.|+++.|+.+....+|+.++|.+.+.+.+.
T Consensus       374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778899999999999999999999999998888766554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.80  E-value=4.4e-17  Score=153.40  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=86.5

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.+++++++|++.+++.|+++|++.|.. +....++.|+.|+++|++..+....+..+|..++++++..+.+..+||
T Consensus        78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr  157 (382)
T PRK10091         78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR  157 (382)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence            4677788899999999999999999998875 555667889999999999999999999999999999988877788999


Q ss_pred             HHHHHhhHHHHHHH-HHHhcCCCCc
Q 016515           82 WLLAFSSVPSFALL-LFYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~~-~~~~~~pESp  105 (388)
                      +.|.+.++..++.. ..++++||.+
T Consensus       158 ~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        158 YTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999887765543 3455678754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.80  E-value=1.1e-16  Score=151.11  Aligned_cols=103  Identities=19%  Similarity=0.325  Sum_probs=86.8

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.++.+++++++.+++.|+++|++.|.. +....++.|++|+++|++..+.......+|..++++++..+.+.++||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            3566777888999999999999999999875 667788999999999999999999999999999999999888889999


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCc
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp  105 (388)
                      +.|++.++.+++..+ .+...||+|
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999988776655433 334567754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.80  E-value=1.8e-17  Score=157.40  Aligned_cols=300  Identities=15%  Similarity=0.151  Sum_probs=177.1

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWL   83 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~   83 (388)
                      .++.++.+++++++.+++.|++.|++.+..+....++.|+.|+++|++..+.......+|..+++.++..+.+..+||+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  174 (408)
T PRK09874         95 GIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV  174 (408)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            44555667788999999999999997554556667888999999999999999999999999999998887778899999


Q ss_pred             HHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccc
Q 016515           84 LAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTR  162 (388)
Q Consensus        84 f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
                      |++.++..++..+ ....+||.++-.   .+.+                          +.+.++               
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~---------------  210 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIRENFQPV---SKKE--------------------------MLHMRE---------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccc---cchh--------------------------hhHHHH---------------
Confidence            9988877655433 445566654210   0000                          000000               


Q ss_pred             cccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh--HHHHHHH
Q 016515          163 KITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL--YVDVFIA  240 (388)
Q Consensus       163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  240 (388)
                                 ..+.+.+++.............. ..... .........+..          ....+...  .....+.
T Consensus       211 -----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~  267 (408)
T PRK09874        211 -----------VVTSLKNPKLVLSLFVTTLIIQV-ATGSI-APILTLYVRELA----------GNVSNIAFISGMIASVP  267 (408)
T ss_pred             -----------HHHhCcCCchHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHh----------ccchHHHHHHHHHHHHH
Confidence                       00001112222111111111100 00000 011111111000          00000000  0111223


Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      +++..++....+++.||+|||+.+..+.....+..+......+.+......+...++.....+....+..+..|.+.|++
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  347 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR  347 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence            45556777788999999999998887766655544443333332222222222222222233344455677889999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ..++.+.+..+|..++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus       348 ~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        348 IFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             eehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888776665666777777777776666554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=5.7e-18  Score=160.77  Aligned_cols=314  Identities=17%  Similarity=0.299  Sum_probs=183.4

Q ss_pred             hhhhhhhhhcC--ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Q 016515            3 TSVAGLLSSFS--PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-L   78 (388)
Q Consensus         3 ~~i~~~l~~~~--~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-~   78 (388)
                      +++.++++-.+  .+++.+++.|++||++.|.. |+.......|+|++||++..++...+..+|.+++.+++..+.+. .
T Consensus       113 sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~  192 (466)
T KOG2532|consen  113 SALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL  192 (466)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence            34555555443  35568899999999999975 78888999999999999999999999999999999999888877 9


Q ss_pred             chHHHHHHhhHHHHHHHHHH-hcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccc
Q 016515           79 NWRWLLAFSSVPSFALLLFY-GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHM  157 (388)
Q Consensus        79 ~WR~~f~~~~i~~l~~~~~~-~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      ||+.+|++.++.+++..+++ ++..|+|+-   +.+..+.  .++++.+..                        .+   
T Consensus       193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~--El~~I~~~k------------------------~~---  240 (466)
T KOG2532|consen  193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEK--ELKYIEKGK------------------------SE---  240 (466)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHH--HHHHHHhcc------------------------cc---
Confidence            99999999999998876655 445788852   1111111  011111000                        00   


Q ss_pred             ccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHH
Q 016515          158 LSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDV  237 (388)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (388)
                             ++..++....++.+++.+-      .|.+++.+....++...+..+.+++    ..++.+.+..+.+   ...
T Consensus       241 -------~~~~~~~~vP~~~i~ts~~------vwai~~~~f~~~~~~~~l~~y~PtY----~~~VL~f~v~~~G---~~s  300 (466)
T KOG2532|consen  241 -------AHVKKKPPVPYKAILTSPP------VWAIWISAFGGNWGFYLLLTYLPTY----LKEVLGFDVRETG---FLS  300 (466)
T ss_pred             -------cccCCCCCCCHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHhhHH----HHHHhCCChhhhh---HHH
Confidence                   0000001123444444321      2333333332233322222222111    1112233222211   234


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceee
Q 016515          238 FIASLAELPGLILSAIIVDKIGRK---------LSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVAT  306 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  306 (388)
                      .++.+..++..+++|.++||+-+|         ..-.++..+.+++++.+.+..  ..+..++++... .+..+ +....
T Consensus       301 alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~-~~~~g-~~~~G  378 (466)
T KOG2532|consen  301 ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA-IGLSG-FNISG  378 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH-HHHcc-cchhh
Confidence            566777888899999999998552         222344455555555555432  222232322222 22222 22333


Q ss_pred             eeccccc-ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHhhcc
Q 016515          307 IYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       307 ~~~~El~-p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .+.+-.- -+++-+...|+++.++.+.++++|.+.+.+..+.   .....|++.+++.+++.+...++
T Consensus       379 f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  379 FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            3433344 7788999999999999999999999998777321   12234555556666665444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.78  E-value=3.6e-16  Score=146.88  Aligned_cols=103  Identities=14%  Similarity=0.252  Sum_probs=86.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.++++|+++|++.+.. +....++.|+.|+++|++..++.+....+|..+++.++..+.+.++||
T Consensus        66 ~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  145 (377)
T PRK11102         66 FALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH  145 (377)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence            3566677778899999999999999998765 566788999999999999999999999999999999988877778999


Q ss_pred             HHHHHhhHHHHHH-HHHHhcCCCCc
Q 016515           82 WLLAFSSVPSFAL-LLFYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~-~~~~~~~pESp  105 (388)
                      +.|++.++..++. .+..+++||++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        146 AIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9999887776655 34456678764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.78  E-value=6e-16  Score=145.60  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=86.3

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.++++|+++|++.+.. +....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  159 (385)
T TIGR00710        80 FALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH  159 (385)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            3566777788999999999999999998875 566788999999999999999999999999999999988877788999


Q ss_pred             HHHHHhhHHHHHH-HHHHhcCCCCc
Q 016515           82 WLLAFSSVPSFAL-LLFYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~-~~~~~~~pESp  105 (388)
                      +.|++.++..++. ....+..||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       160 AIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9998887766554 33445577765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.77  E-value=2.2e-17  Score=153.31  Aligned_cols=273  Identities=25%  Similarity=0.406  Sum_probs=161.5

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      +++.++..++++++.+++.|+++|++.+.. +....++.|+.|+++|++..+..+....+|.++++.++..+.+..+||+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~  152 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW  152 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence            334344456688889999999999998765 6778899999999999999999999999999999999998888889999


Q ss_pred             HHHHhhHHHHHHHHH-HhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           83 LLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        83 ~f~~~~i~~l~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      .|++.++..++..++ ..+.+|.|+.-..+                     +        + + +++++           
T Consensus       153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~---------------------~--------~-~-~~~~~-----------  190 (352)
T PF07690_consen  153 AFLISAILSLIAAILFILFLPEPPPPRERE---------------------S--------P-K-ESESK-----------  190 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC---STTTT-----------------------S--------S-T-TTT-------------
T ss_pred             ccccccchhhhhhhhHhhhhhhcccccccc---------------------c--------c-c-ccccc-----------
Confidence            999998887776543 35556554310000                     0        0 0 00000           


Q ss_pred             ccccccccccchh-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          162 RKITDKLKSGFSS-FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       162 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                            .+++..+ ++.+++++...   ..+...+...+.++....+.+.+ .+        ..+.  +..........+
T Consensus       191 ------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~--~~~~~~~~~~~~  251 (352)
T PF07690_consen  191 ------KPKPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQE--------VLGF--SGPSQAGLLFSI  251 (352)
T ss_dssp             ------HHHCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHC--CTHHHHHHHHHH
T ss_pred             ------cccccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhh--------ccCC--CHHHHHHHHHHH
Confidence                  0000011 22232222111   11111111222222222222221 10        0001  100111122344


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+...++.++.+++.||+|+|+..........+..+.+..   ..+........+...++.....+....+..|..|++
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  331 (352)
T PF07690_consen  252 FGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE  331 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            55666777899999999999877666555444443333322   212222222222233333334566778999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHH
Q 016515          317 ARTTGFGVASSLGKVGGMVCP  337 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p  337 (388)
                      .|+++.|+.+.+..+++.++|
T Consensus       332 ~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  332 YRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.77  E-value=1.6e-16  Score=154.53  Aligned_cols=319  Identities=13%  Similarity=0.091  Sum_probs=169.4

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhh-cccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEF-VPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN   79 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~-~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~   79 (388)
                      +..++++++++++|++.++++|+++|++.|.. +.....+.++ .|+++|++..++....+.+|..+++.++..+.+..+
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            34677888999999999999999999998765 5555556565 478999999999999999999999999999988999


Q ss_pred             hHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHH-------HHHhcCCCCCCCccccchhhhhhhhchh
Q 016515           80 WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEK-------MAFVNQTKLPPGILVSDKAIKENEESNL  151 (388)
Q Consensus        80 WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (388)
                      ||+.|++.....++. .+..+.+||+|+-  ++++.|.....+..       ....+..+....    ....-.......
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~  233 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLS----LWVTSLTLLTGA  233 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCc----hHHHHHHHHHHH
Confidence            999999876555444 3445667887641  11112111111000       000000000000    000000000000


Q ss_pred             hhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCcccccCCCCC
Q 016515          152 LRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLSSGDNKCGSKVLHADKSKD  230 (388)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  230 (388)
                      ..    .......+.+.+.+...+ .+++++......+   ..+...+.+++...+.+ .+....        +   .+.
T Consensus       234 ~~----l~~f~~~e~~~~~p~~~~-~lf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lq~v~--------g---~s~  294 (495)
T PRK14995        234 LL----LGLFIRTQLAASRPMIDM-RLFTHRIILSGVV---MAMTAMITLVGFELLMAQELQFVH--------G---LSP  294 (495)
T ss_pred             HH----HHHHHHHHhcCCCCCcCH-HHhCCcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHc--------C---CCH
Confidence            00    000000000001111112 2333222221111   11111222222222111 111000        0   000


Q ss_pred             chhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--h-chhHHHHHHHHHHHHhhhcccceeee
Q 016515          231 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--H-QSAVVTTVLLFGVRMCVTGTITVATI  307 (388)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (388)
                      ...-.......+...++..+.|++.||+|||+.+..+.....+....+..  . .+.+......+...+......+....
T Consensus       295 ~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~  374 (495)
T PRK14995        295 LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTS  374 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence            11112233445667788899999999999999887776555443333221  1 12222122222222222222334455


Q ss_pred             ecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          308 YAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       308 ~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      ...+..|++.++.+.++.+....+|+.+++.+.+.+.+
T Consensus       375 ~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        375 AIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788999999999999999999999888877766543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1e-17  Score=159.46  Aligned_cols=103  Identities=25%  Similarity=0.437  Sum_probs=90.2

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH------hc
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV------MT   76 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~------~~   76 (388)
                      ++.++++....|++.+++.|++.|+..++. |....+++-|..+++||..++++....++|+++++++++.+      ..
T Consensus       122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence            566667777889999999999999999865 88888999999999999999999999999999999998885      23


Q ss_pred             ccchHHHHHHhhHHHHHH-HHHHhcCCCCch
Q 016515           77 RLNWRWLLAFSSVPSFAL-LLFYGLAPESPR  106 (388)
Q Consensus        77 ~~~WR~~f~~~~i~~l~~-~~~~~~~pESp~  106 (388)
                      ..||||+|++.++..++. ++..+++|+.|.
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            579999999999887776 456677999997

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.77  E-value=4.5e-16  Score=147.09  Aligned_cols=102  Identities=19%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++..++++++.+++.|+++|++.+.. +....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||+
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~  158 (392)
T PRK10473         79 IIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQS  158 (392)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence            556667778899999999999999998875 5667889999999999999999999999999999988887777789999


Q ss_pred             HHHHhhHHHHHHH-HHHhcCCCCc
Q 016515           83 LLAFSSVPSFALL-LFYGLAPESP  105 (388)
Q Consensus        83 ~f~~~~i~~l~~~-~~~~~~pESp  105 (388)
                      .|++.++..++.. +....+||++
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        159 LFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9998877766543 3445678764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.77  E-value=1.3e-15  Score=144.74  Aligned_cols=103  Identities=13%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++.+++++++.+++.|+++|++.+.. +...+++.|+.|+++|++..+.......+|..+++.++..+.+..+||+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~  168 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG  168 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence            456667788899999999999999998864 5667788999999999998888888888888999888877777789999


Q ss_pred             HHHHhhHHHHHHHH-HHhcCCCCch
Q 016515           83 LLAFSSVPSFALLL-FYGLAPESPR  106 (388)
Q Consensus        83 ~f~~~~i~~l~~~~-~~~~~pESp~  106 (388)
                      .|++.++..++..+ .++..||+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99988877665543 4455787653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.77  E-value=4.9e-17  Score=156.44  Aligned_cols=314  Identities=11%  Similarity=0.086  Sum_probs=164.7

Q ss_pred             hhhhhhhhhcCccHHHHHH-HHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 016515            3 TSVAGLLSSFSPNYVSLVI-FRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNW   80 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~-~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~W   80 (388)
                      .+++.++++++++++.+++ .|+++|++.|.. +....++.|++| ++|++..++.+.+..+|..++++++..+.+.+||
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892        94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence            3566778888999998875 579999998864 555567789886 7899999999999999999999988877778899


Q ss_pred             HHHHHHhhHHHHHHHHHHhc-CCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           81 RWLLAFSSVPSFALLLFYGL-APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~~~~~-~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      |+.|++.++..++..+...+ .|+.+..  .+.+ ++.+           .+.+++     .  ..++.    +.     
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~-----------~~~~~~-----~--~~~~~----~~-----  222 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK-SKSK-----------EGLPPD-----G--STKKL----SK-----  222 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc-cccc-----------ccCCCC-----C--ccccc----cc-----
Confidence            99999988876654333322 3332210  0000 0000           000000     0  00000    00     


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                       ...  .++......++.+.+++.+.    .....+...+.++....+.+.+..+..        .  + .........+
T Consensus       223 -~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~~~g--------~--s-~~~~g~~~~~  284 (455)
T TIGR00892       223 -KST--AEKINRFLDFSLFTHRGFLV----YLSGNVIMFLGFFAPIIFLVPYAKDKG--------V--D-EYEAAFLLSI  284 (455)
T ss_pred             -cch--hhhhhhhcchHHhcCchHHH----HHHHHHHHHHHccchHHHHHHHHHHcC--------C--C-HHHHHHHHHH
Confidence             000  00000000111121222221    111111122222222211111111100        0  0 1111122334


Q ss_pred             HHhhhhHHHHHHHHHHHHh--chhHHHHHH--HHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          240 ASLAELPGLILSAIIVDKI--GRKLSMVLM--FVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~--gRr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      .+++.+++.++.+++.||.  ++|+.....  .+..++..+......+.+..........++.....+..+.+..|.+|+
T Consensus       285 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~  364 (455)
T TIGR00892       285 IGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA  364 (455)
T ss_pred             HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH
Confidence            4666677788889999973  334333222  222222222222222222222222222223223334566788899999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHH
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA  365 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  365 (388)
                      +.|+++.|+.+.+..+|+.++|.+.+.+.+..+ ....+.+.+++.+++.+
T Consensus       365 ~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       365 QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999988776543 33444444444444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.76  E-value=3.1e-16  Score=148.09  Aligned_cols=292  Identities=13%  Similarity=0.135  Sum_probs=164.9

Q ss_pred             hhhhhhhhhcC-----ccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHH----
Q 016515            3 TSVAGLLSSFS-----PNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWV----   73 (388)
Q Consensus         3 ~~i~~~l~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~----   73 (388)
                      .++.+++++++     ++++++++.|++.|++.+..++....+.+|+|+++||++.++......+|..+++.+.-.    
T Consensus       110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            35666777765     899999999999999833346677889999999999999999865555555444333221    


Q ss_pred             -Hhc-------------ccchHHHHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccc
Q 016515           74 -VMT-------------RLNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILV  138 (388)
Q Consensus        74 -~~~-------------~~~WR~~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  138 (388)
                       +..             ..+||...++-.++.++..+ .++.+++.|.   .|.+.                        
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~------------------------  242 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI------------------------  242 (462)
T ss_pred             HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH------------------------
Confidence             111             23488877766655554433 3333444331   00000                        


Q ss_pred             cchhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 016515          139 SDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKC  218 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
                             ++                          ....+.+++    ++++..++++..-+|.++..+.+.+.+.    
T Consensus       243 -------~~--------------------------~~~vlk~~~----~Wllslly~~tFG~fvg~s~~lp~~~~~----  281 (462)
T PRK15034        243 -------AD--------------------------QLPVLQRLH----LWLLSLLYLATFGSFIGFSAGFAMLAKT----  281 (462)
T ss_pred             -------HH--------------------------HHHHhCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                   00                          000011122    1222223333332333333222222110    


Q ss_pred             CCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh--hhch---hHHHHHHHHH
Q 016515          219 GSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV--FHQS---AVVTTVLLFG  293 (388)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~  293 (388)
                           .+  + +........+..+...++..++|+++||+|||+++..+.....++.....  .+.+   ........+.
T Consensus       282 -----~~--~-~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~  353 (462)
T PRK15034        282 -----QF--P-DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM  353 (462)
T ss_pred             -----Hc--C-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence                 00  0 11112223334455677778999999999999988877765555443322  2211   1111122222


Q ss_pred             HHHhhhccc-ceeeeeccccccc---------------------chhhHHHHHHHHHHhHhHhHHHHHHHHhhcccch-h
Q 016515          294 VRMCVTGTI-TVATIYAPEIYPT---------------------SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-R  350 (388)
Q Consensus       294 ~~~~~~~~~-~~~~~~~~El~p~---------------------~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~-~  350 (388)
                      ..+...+.. ...+-+.+..||.                     +.-+...|+..+.|.+|+++.|.+.+...+.++. .
T Consensus       354 ~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~  433 (462)
T PRK15034        354 GLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPV  433 (462)
T ss_pred             HHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcH
Confidence            222333333 3466788888885                     1466778999999999999999888877766543 3


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 016515          351 LAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ..+..+.+..++|.++.+.+
T Consensus       434 ~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        434 GAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777654

>TIGR00897 2A0118 polyol permease family

Probab=99.76  E-value=1.1e-15  Score=144.86  Aligned_cols=290  Identities=14%  Similarity=0.117  Sum_probs=157.8

Q ss_pred             CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHhhHH
Q 016515           13 SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGT-IFEASLAWVVMTRLNWRWLLAFSSVP   90 (388)
Q Consensus        13 ~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-~~~~~l~~~~~~~~~WR~~f~~~~i~   90 (388)
                      .++++.+++.|+++|++.+.. +....++.|+.|+++||++++..+....+|. ++++.++..+.+..||+..++.....
T Consensus       102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            368899999999999998764 4556778899999999999999999999997 57777776666667855544433222


Q ss_pred             HHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccccccc
Q 016515           91 SFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLK  169 (388)
Q Consensus        91 ~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
                      .++. .+..+..+|.|+       .++.             + +        +.+.++                      
T Consensus       182 ~~~~~~~~~~~~~~~~~-------~~~~-------------~-~--------~~~~~~----------------------  210 (402)
T TIGR00897       182 VLTGGVIALFSNKDIFT-------PQHM-------------Q-T--------REKFSE----------------------  210 (402)
T ss_pred             HHHHHHHHHhccCCCCC-------cccc-------------c-C--------Ccchhh----------------------
Confidence            2221 122223343221       0000             0 0        000000                      


Q ss_pred             ccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHH
Q 016515          170 SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLI  249 (388)
Q Consensus       170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (388)
                       ....++.+++.+...   ......+.+...+++...+.+.+.++.        +.  +. ...........++..++.+
T Consensus       211 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~--s~-~~~~~~~~~~~~~~~ig~~  275 (402)
T TIGR00897       211 -LGKAATILFTNPNVL---LGGMVRIINTIGLFGFAVFLPMFVAEL--------GF--ST-SEWLQIWGTFFFTNIVFNV  275 (402)
T ss_pred             -HHHHHHHHHcChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc--------CC--Ch-hHHHHHHHHHHHHHHHHHH
Confidence             000111222222111   111222223333333333333221111        00  11 1111222344567789999


Q ss_pred             HHHHHHHHhchhHHHH-HHHHHHHHHHHHHh-h----hchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHH
Q 016515          250 LSAIIVDKIGRKLSMV-LMFVSACIFLLPLV-F----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFG  323 (388)
Q Consensus       250 ~~~~l~d~~gRr~~~~-~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~  323 (388)
                      ..|+++||+|||+... .+.....+..+.+. .    .+..+......+...++..+..+ .....+|..| +.|+++.|
T Consensus       276 ~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g  353 (402)
T TIGR00897       276 IFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMS  353 (402)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHH
Confidence            9999999999887653 22222222211111 1    11222111222222222222222 2334567655 58999999


Q ss_pred             HHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          324 VASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       324 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      +.+....+++.++|.+.+.+.+..+....+++.+++.+++.+...|.
T Consensus       354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998887776667777777777776666553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=99.75  E-value=2.2e-15  Score=142.86  Aligned_cols=103  Identities=14%  Similarity=0.194  Sum_probs=83.7

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.+++.|+++|++.+.. +....++.|+.|+++|++..+.......+|..+++.++..+.+..+||
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~  160 (401)
T PRK11043         81 FALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ  160 (401)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence            3456677788999999999999999998764 445578899999999998888888888889999998888887888999


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp  105 (388)
                      +.|++.++..++..+..++++|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        161 AIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999988887776655555566554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.75  E-value=1.6e-15  Score=143.86  Aligned_cols=101  Identities=19%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             hhhhhhcC---ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cch
Q 016515            6 AGLLSSFS---PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-LNW   80 (388)
Q Consensus         6 ~~~l~~~~---~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-~~W   80 (388)
                      +..+.++.   .+++.+++..++.|+..+.. +...+++.|+.|+++|+++.++...++.+|.++++.++..+.+. +||
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            33444555   35777888888888665554 66778999999999999999999999999999999888777664 599


Q ss_pred             HHHHHHhhHHHHHHHHHHhcCCCCch
Q 016515           81 RWLLAFSSVPSFALLLFYGLAPESPR  106 (388)
Q Consensus        81 R~~f~~~~i~~l~~~~~~~~~pESp~  106 (388)
                      |..|++.++..++..+..++.||+++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            99999988776665555566788653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.74  E-value=3.3e-16  Score=146.05  Aligned_cols=261  Identities=16%  Similarity=0.133  Sum_probs=147.7

Q ss_pred             hhhhhhhcC---ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Q 016515            5 VAGLLSSFS---PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN-   79 (388)
Q Consensus         5 i~~~l~~~~---~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-   79 (388)
                      +...+.++.   .+.+.+....++.|++.+.. +...+++.|++|+|+|++..+..+.++.+|.++++.++..+.+..+ 
T Consensus        69 ~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~  148 (356)
T TIGR00901        69 SLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA  148 (356)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            444455566   35556777777777666554 5667889999999999999999999999999999999877766666 


Q ss_pred             -------hHHHHHHhhHHHHHHHHHHh-cCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchh
Q 016515           80 -------WRWLLAFSSVPSFALLLFYG-LAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL  151 (388)
Q Consensus        80 -------WR~~f~~~~i~~l~~~~~~~-~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (388)
                             ||..|++.++..++..+..+ ..||+++.   +.+.++                           +..+.   
T Consensus       149 ~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~---------------------------~~~~~---  195 (356)
T TIGR00901       149 NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKP---------------------------LTQAV---  195 (356)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchh---------------------------HHHHH---
Confidence                   99999999887776655544 35774320   000000                           00000   


Q ss_pred             hhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCCCCCcccccCCCCC
Q 016515          152 LRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL-LTSKLSSGDNKCGSKVLHADKSKD  230 (388)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  230 (388)
                                          ...++.+++++..+.........+...+.++.... ....+.. ..          .+. 
T Consensus       196 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g----------~~~-  243 (356)
T TIGR00901       196 --------------------LKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MG----------FSK-  243 (356)
T ss_pred             --------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC----------CCH-
Confidence                                00112222222111122222222222222222221 1111110 00          000 


Q ss_pred             chhH-HHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--c--------hh-HHHHHHHHHHHHhh
Q 016515          231 NSLY-VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--Q--------SA-VVTTVLLFGVRMCV  298 (388)
Q Consensus       231 ~~~~-~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~--------~~-~~~~~~~~~~~~~~  298 (388)
                      .... .......+..+++.++++++.||+|||+.+..+.++.++....+...  .        +. +......+...++.
T Consensus       244 ~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  323 (356)
T TIGR00901       244 EEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTG  323 (356)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHh
Confidence            1111 11122234567899999999999999988777666555443332221  1        11 21222222222333


Q ss_pred             hcccceeeeecccccccchhhHHHHHHHHHHh
Q 016515          299 TGTITVATIYAPEIYPTSARTTGFGVASSLGK  330 (388)
Q Consensus       299 ~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~  330 (388)
                      ....+....+..|.+|++.|++..|+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       324 GLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            34445677899999999999999999887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.74  E-value=7.8e-16  Score=164.74  Aligned_cols=273  Identities=13%  Similarity=0.036  Sum_probs=158.5

Q ss_pred             hhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---------c
Q 016515            9 LSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR---------L   78 (388)
Q Consensus         9 l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~---------~   78 (388)
                      +..++++++.++++|+++|++.|.. ++..+++.|++|+++|+++.++.+.+..+|.++++.++.++...         .
T Consensus        96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633         96 LAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            3445678999999999999998875 67778999999999999999999999999999999998877654         2


Q ss_pred             chHHHHHHhhHH-HHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccc
Q 016515           79 NWRWLLAFSSVP-SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHM  157 (388)
Q Consensus        79 ~WR~~f~~~~i~-~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      +|++.+.+..+. .++.+++.+.+||+|+....+++  +              +         .....            
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~---------~~~~~------------  218 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--K--------------K---------KYLFP------------  218 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--c--------------c---------ccccH------------
Confidence            455554444433 33445555667988753110000  0              0         00000            


Q ss_pred             ccccccccccccccchhhhhhcchhHHHHHHHH-HHHHHHHHH-HHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHH
Q 016515          158 LSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLL-WVLFFANVF-SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYV  235 (388)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (388)
                                 +.....++.+++.+.....++. .+.++.... ..+...+....+.              .+.......
T Consensus       219 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------~s~~~~~g~  273 (1146)
T PRK08633        219 -----------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG--------------LDNTFQVQY  273 (1146)
T ss_pred             -----------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------CCcHHHHHH
Confidence                       0000122333333332222221 111111111 1111111111111              011101112


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ......++.+++.++.+++.||.++|+.+.++.++.+++.+.+....+.+...+..+...++.....+....+..|..|+
T Consensus       274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  353 (1146)
T PRK08633        274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE  353 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc
Confidence            23445566788899999999999988877766655555444443333322222222222233333334456788899999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHh
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGL  343 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~  343 (388)
                      +.|+++.|+.+.+..+++.+++.+...+
T Consensus       354 ~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        354 KELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887777655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.72  E-value=9.5e-15  Score=138.85  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..+++++++++++++.++++|+++|++.+.. +....++.|+.|+++|++..+.......+|..+++.++..+.+.++||
T Consensus        91 ~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403         91 FTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            4567788889999999999999999998754 345567889999999999999999999999999999988877778999


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCc
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp  105 (388)
                      +.|++.++..++..+ .++.+||++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999998888776544 355689875

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.72  E-value=3.5e-15  Score=140.91  Aligned_cols=297  Identities=13%  Similarity=0.053  Sum_probs=162.3

Q ss_pred             hhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 016515            5 VAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWL   83 (388)
Q Consensus         5 i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~   83 (388)
                      +++++.+++++.   ++.|+++|++.|.. |...+++.|++|+++|+++.+..+.....|.++++.++..+.+. .|+..
T Consensus        80 ~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~  155 (393)
T PRK11195         80 LGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAA  155 (393)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            344444555543   78999999998875 77789999999999999999999999999999999998887654 48888


Q ss_pred             HHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccc
Q 016515           84 LAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK  163 (388)
Q Consensus        84 f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
                      +.+.+...++..+....+||+|+..  +++.++..+.+                        ++.               
T Consensus       156 ~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~------------------------~~~---------------  194 (393)
T PRK11195        156 LAVCALIYLLAALFNLFIPRLGARR--PGQSWNPIALL------------------------RDF---------------  194 (393)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccc--cccCCCHHHHH------------------------HHH---------------
Confidence            7776655444455567789876421  00000000000                        000               


Q ss_pred             ccccccccchhhhhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHh
Q 016515          164 ITDKLKSGFSSFFMLFSRKLIRTTLLL-WVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL  242 (388)
Q Consensus       164 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (388)
                              ....+.+++.+..+..... .+.+.......+....+.+....           .  + ...........++
T Consensus       195 --------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg-----------~--s-~~~~G~~~~~~~~  252 (393)
T PRK11195        195 --------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG-----------I--T-LNQPAYLQAVVAI  252 (393)
T ss_pred             --------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------C--C-hhHHHHHHHHHHH
Confidence                    0011122332322222221 12222222222222222221110           0  1 1111222344566


Q ss_pred             hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch-hhHH
Q 016515          243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA-RTTG  321 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~-R~~~  321 (388)
                      +.++++++.+++.||.++|+.+..+...+ +....+....+.+......+...++.....+.......|.-|++. ++++
T Consensus       253 g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~  331 (393)
T PRK11195        253 GIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHS  331 (393)
T ss_pred             HHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhH
Confidence            77888888899999988887776664332 222222222222222222222222221122223344566666654 7999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          322 FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       322 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .++.+...+++..++..+...+ +..+....+.+.+...+++....+.+
T Consensus       332 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        332 IAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888776644 34444444444444444444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.72  E-value=7.6e-15  Score=138.98  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++.+++++++.++++|+++|++.|.. +...+++.|++|+++|++..+..+....+|..+++.++..+. .++||+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~  165 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRL  165 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence            456666778899999999999999987754 666788899999999999999999999999999999988777 689999


Q ss_pred             HHHHhhHHHHHHH-HHHhcCCC
Q 016515           83 LLAFSSVPSFALL-LFYGLAPE  103 (388)
Q Consensus        83 ~f~~~~i~~l~~~-~~~~~~pE  103 (388)
                      .|++.++..++.. +..++.||
T Consensus       166 ~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        166 VCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc
Confidence            9998877655543 33344555

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.70  E-value=1.6e-14  Score=135.90  Aligned_cols=284  Identities=18%  Similarity=0.137  Sum_probs=156.2

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++.+++++++.+++.|+++|++.|.. +.....+.+..|+++|++..+..+....+|..+++.++..+.+...|+
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633         81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            3456677788999999999999999998875 555667778899999999999999999999999999887765443333


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      ..+....+...+........+|++.      +                 +               +..   +        
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-----------------~---------------~~~---~--------  191 (381)
T PRK03633        161 LPWVTGLVLAAILPLLFTRILNQQA------E-----------------N---------------HDS---T--------  191 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCC------C-----------------C---------------CCC---C--------
Confidence            3222111111111111111222100      0                 0               000   0        


Q ss_pred             ccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                                  +.+..++ ++.+. .....+........++.  +....+.+ .   +       .+ .........+.
T Consensus       192 ------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~lp~~~~~-~---g-------~s-~~~~g~~~~~~  244 (381)
T PRK03633        192 ------------SIWPMLKLRQARL-GVNGCIISGIVLGSLYG--LMPLYLNH-Q---G-------MS-DASIGFWMALL  244 (381)
T ss_pred             ------------CHHHHHHhcchHH-HHHHHHHHHHHHHHHHH--HHHHHHHH-c---C-------CC-HHHHHHHHHHH
Confidence                        0001111 11111 11111111111111111  11111110 0   0       01 01111223344


Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      .+..+++.+..+++.||+|||+.+..+.....+....+. ... .. ...............+.......|..|++.++.
T Consensus       245 ~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~-~~-~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~  321 (381)
T PRK03633        245 VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQA-AM-APALFILGAAGFTLYPVAMAWACEKVEHHELVA  321 (381)
T ss_pred             HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhH-HH-HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHH
Confidence            566788899999999999999987766555444333222 111 11 111111111112234555566789999888888


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                      +.+..+....+|+.++|.+.+.+.+..+....+.+.+.+.++..+
T Consensus       322 ~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        322 MNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            888887778899999999999888876655566665555555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.70  E-value=1.7e-15  Score=141.67  Aligned_cols=104  Identities=16%  Similarity=0.355  Sum_probs=75.2

Q ss_pred             hhhhhhhhhcCc-cHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 016515            3 TSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-----   76 (388)
Q Consensus         3 ~~i~~~l~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-----   76 (388)
                      ..++.++.++++ +++.++++|+++|++.+..+....++.|+.|+++|++..++......+|..+++.++..+..     
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            356667778888 99999999999999865545566789999999999999999887777777766665543322     


Q ss_pred             -----ccchHHHH-HHhhHHH-HHHHHHHhcCCCCch
Q 016515           77 -----RLNWRWLL-AFSSVPS-FALLLFYGLAPESPR  106 (388)
Q Consensus        77 -----~~~WR~~f-~~~~i~~-l~~~~~~~~~pESp~  106 (388)
                           ..+||+.| ...++.. +...+.....+|+|+
T Consensus       157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence                 34899998 4334333 333444556677764

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.70  E-value=1.1e-14  Score=139.62  Aligned_cols=315  Identities=14%  Similarity=0.088  Sum_probs=169.2

Q ss_pred             hhhhhhhcCcc------HHHHHHHHHHhhccCcch-hhHHHHHHhhc-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-
Q 016515            5 VAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFV-PVSHRGRWMVALSAFWTAGTIFEASLAWVVM-   75 (388)
Q Consensus         5 i~~~l~~~~~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-   75 (388)
                      ++.++..++|+      +..+++.+++.|++.+.. ....++..|.. ++++|++..+..+.+..+|.++++.+...+. 
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555554      456777888888876653 33445677887 5689999999888888888777665543332 


Q ss_pred             ------cccchHHHHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhh
Q 016515           76 ------TRLNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEE  148 (388)
Q Consensus        76 ------~~~~WR~~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (388)
                            +..+||+.+.+.++.+++..+ ..+.+||.|+.     +.++                             ++.
T Consensus       162 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~-----------------------------~~~  207 (437)
T TIGR00792       162 YFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPKN-----------------------------IEK  207 (437)
T ss_pred             HhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCcc-----------------------------ccc
Confidence                  246899999888887766544 44556775410     0000                             000


Q ss_pred             chhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCC
Q 016515          149 SNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKS  228 (388)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (388)
                      +.                   ...+.++.+++++......+.   .+...+.++........+.+.       ..   .+
T Consensus       208 ~~-------------------~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~---~~  255 (437)
T TIGR00792       208 KL-------------------SLKQIFKALFKNDQLLILCLA---YLFYNLAFNIKNGVQVYYFTY-------VL---GD  255 (437)
T ss_pred             CC-------------------CHHHHHHHHhCCHHHHHHHHH---HHHHHHHHHHHcchhheeEee-------ec---CC
Confidence            00                   000122333333222221111   111112222111111111110       00   00


Q ss_pred             CCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhcccceeee
Q 016515          229 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATI  307 (388)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  307 (388)
                      . ........+..+..+++.++.+++.||+|||+.+..+..+..+..+.+.... +.+......+...++.....+..+.
T Consensus       256 ~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       256 P-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1111122334667788899999999999999988877665554444333322 2222222222222232333455677


Q ss_pred             ecccccc-------cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchh--------------HHHHHHH-HHHHHHHH
Q 016515          308 YAPEIYP-------TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR--------------LAVILFE-VVFVLAIA  365 (388)
Q Consensus       308 ~~~El~p-------~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~--------------~~~~i~~-~~~~~~~~  365 (388)
                      +.+|..|       .+.++++.|+.+.+..+++.+++.+.+.+.+..+..              ..+.+.. ++.+++.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~  414 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAAI  414 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777765       667899999999999999999998888776543210              0122222 33344444


Q ss_pred             Hhh-cccccccCcchhhhHHhhhC
Q 016515          366 SSL-LFPFETMGRELKDTVDAIES  388 (388)
Q Consensus       366 ~~~-~~~pet~~~~l~~~~~~~~~  388 (388)
                      ... ++ |.++ ++.+|+++|+|+
T Consensus       415 ~~~~~y-~l~~-~~~~~i~~~l~~  436 (437)
T TIGR00792       415 IIGRFY-KLTE-KKHAEIVEELEQ  436 (437)
T ss_pred             HHHHHe-eCcH-HHHHHHHHHHhc
Confidence            444 44 4443 456677777764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.70  E-value=2.7e-15  Score=160.30  Aligned_cols=269  Identities=13%  Similarity=0.020  Sum_probs=159.2

Q ss_pred             cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHH
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP   90 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~   90 (388)
                      ..+++++++++|+++|++.+.. |+..+++.|++|+++|++++++.+.+..+|.+++++++.++....+||+.|+...+.
T Consensus       104 ~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~  183 (1140)
T PRK06814        104 HLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGI  183 (1140)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            4589999999999999998865 778889999999999999999999999999999999999988889999999665555


Q ss_pred             HHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccc
Q 016515           91 SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKS  170 (388)
Q Consensus        91 ~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (388)
                      .++.+++.+++||++.   .+.+.                +         .  +.+..    +                .
T Consensus       184 ~~~~~~~~~~~~~~~~---~~~~~----------------~---------~--~~~~~----~----------------~  213 (1140)
T PRK06814        184 AVLGWLASLFIPKTGN---AAPDL----------------K---------I--DRNII----R----------------S  213 (1140)
T ss_pred             HHHHHHHHhhCCCCCC---CCCCC----------------e---------e--ccchH----H----------------H
Confidence            5555666667777642   00000                0         0  00000    0                0


Q ss_pred             cchhhhhhcchhHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHH
Q 016515          171 GFSSFFMLFSRKLIRTTLLL-WVLFFAN-VFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGL  248 (388)
Q Consensus       171 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (388)
                      ....++.+++.+......+. .+.++.. .+..+...+....+.               .............+++.++|.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g---------------~~~~~~g~~~~~~~~g~~ig~  278 (1140)
T PRK06814        214 TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLG---------------GDENVATLFLAVFSVGVAVGS  278 (1140)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC---------------CchHHHHHHHHHHHHHHHHHH
Confidence            00112223332222222221 1111111 111111111111111               001111122344566778899


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--------------------chhHHHHHHHHHHHHhhhcccceeeee
Q 016515          249 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--------------------QSAVVTTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       249 ~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      ++.+++.|+.++++.+..+.++.+++.+.+...                    .+.+...+..+...++.........++
T Consensus       279 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  358 (1140)
T PRK06814        279 FLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAA  358 (1140)
T ss_pred             HHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999987776654444333332222211110                    222222222222223322333346678


Q ss_pred             cccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          309 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      ..+..|++.||++.|+.+.+..++..+++.+.+.+.+
T Consensus       359 ~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        359 LQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988877654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.69  E-value=3.6e-14  Score=133.62  Aligned_cols=284  Identities=14%  Similarity=0.005  Sum_probs=162.9

Q ss_pred             hhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhh
Q 016515           10 SSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSS   88 (388)
Q Consensus        10 ~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~   88 (388)
                      ..++++++.+++.|+++|.+.+.. |...++..|+  +++|++..+......++|.+++++++..+.+.+|||..|.+..
T Consensus        88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~  165 (382)
T TIGR00902        88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT  165 (382)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            346789999999999999887654 6666666664  4678888888889999999999999888888899999998765


Q ss_pred             HHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccc
Q 016515           89 VPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKL  168 (388)
Q Consensus        89 i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
                      +...+... ...++|+|+    +++.++                             ++..                   
T Consensus       166 ~~~~~~~~-~~~~~~~~~----~~~~~~-----------------------------~~~~-------------------  192 (382)
T TIGR00902       166 AGLAFMLI-GFLIKPTIP----PKDAIP-----------------------------EDES-------------------  192 (382)
T ss_pred             HHHHHHHH-HHHcCCCCC----CCcccc-----------------------------cccc-------------------
Confidence            54332222 223344321    000000                             0000                   


Q ss_pred             cccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHH
Q 016515          169 KSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGL  248 (388)
Q Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (388)
                       ......+.+++++......+...........++.  +....+. +..          .+. ...-....+..+.++++.
T Consensus       193 -~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~l~-~~g----------~s~-~~~g~l~~~~~~~~i~~~  257 (382)
T TIGR00902       193 -QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG--FSAIYWQ-AAG----------ISA-SATGLLWGIGVLAEIIIF  257 (382)
T ss_pred             -ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HCC----------CCH-hHHHHHHHHHHHHHHHHH
Confidence             0000112222222111111111111111111221  1111121 100          011 111122334566778888


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHH
Q 016515          249 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL  328 (388)
Q Consensus       249 ~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~  328 (388)
                      .+.+++.||+|+|+.+..+.....+.+......++.+........-.+......+....+..+. |++.|+++.++.+..
T Consensus       258 ~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~  336 (382)
T TIGR00902       258 AFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNAL  336 (382)
T ss_pred             HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence            9999999999999999888877776665554433332222222222222222233344566777 999999999998754


Q ss_pred             -HhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 016515          329 -GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       329 -~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                       ..+|..++|.+.+.+.+..+ ...+++.+++.+++.+
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g-~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLG-AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence             45888889999999888765 3456666666655543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.68  E-value=4.5e-15  Score=134.41  Aligned_cols=293  Identities=17%  Similarity=0.192  Sum_probs=170.9

Q ss_pred             hhhhhcC---ccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc---h
Q 016515            7 GLLSSFS---PNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN---W   80 (388)
Q Consensus         7 ~~l~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~---W   80 (388)
                      .+..+++   ++++++++.+++.|++-|...+..+++++|+||+++|.+.+++. .-.+|..+...++-.+....+   |
T Consensus        93 ~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w  171 (417)
T COG2223          93 CLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAW  171 (417)
T ss_pred             HHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHH
Confidence            3444444   44569999999999997776777889999999999999999987 666676665555544444456   9


Q ss_pred             HHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccc
Q 016515           81 RWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLS  159 (388)
Q Consensus        81 R~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      |....+-.++.++. +..++.+.|.|+...++++..                            .               
T Consensus       172 ~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~----------------------------~---------------  208 (417)
T COG2223         172 RNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL----------------------------P---------------  208 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc----------------------------h---------------
Confidence            99887766665553 455666777665311000000                            0               


Q ss_pred             ccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          160 MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                                   ...+..+++   +.++.+...++.+.-++-++..+.+.+.+.         ++..+.. +.-.....
T Consensus       209 -------------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~---------~fg~~~~-~Ag~~a~~  262 (417)
T COG2223         209 -------------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVT---------QFGLSPV-TAGLIAFL  262 (417)
T ss_pred             -------------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCChh-hHHHHHHH
Confidence                         001111111   112233334444333333332222222110         0101111 10011111


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc------hhHHHHHHHHHHH-Hhhhcccceeeeecccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ------SAVVTTVLLFGVR-MCVTGTITVATIYAPEI  312 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~El  312 (388)
                      ..+.+...-.++|+++||+|.||+++.....+.++........      .........+... .+........+.+.+..
T Consensus       263 f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~i  342 (417)
T COG2223         263 FPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVI  342 (417)
T ss_pred             HHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHH
Confidence            2222333345789999999988888777766666555544321      1122222222222 23233334678889999


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhhcc
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      ||. .-+...|+...+|.+|++.-|...+...+.++ ....+.++..+.+++.+..+..
T Consensus       343 f~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         343 FPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            987 46778999999999999999999998888776 3455677777777777766543

>PRK10133 L-fucose transporter; Provisional

Probab=99.67  E-value=5e-14  Score=134.77  Aligned_cols=283  Identities=11%  Similarity=0.049  Sum_probs=153.0

Q ss_pred             hhhhhhh---hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-c--
Q 016515            4 SVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM-T--   76 (388)
Q Consensus         4 ~i~~~l~---~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-~--   76 (388)
                      ++++++.   +++++++.++++|+++|+|.|.. +....++.|+.|+++|++..+..+..+.+|..+++.++..+. .  
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4555443   57899999999999999999875 566778889877777777788899999999999988765432 0  


Q ss_pred             -----------------c------cchHHHHHHhh-HHHHHHH-HHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCC
Q 016515           77 -----------------R------LNWRWLLAFSS-VPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTK  131 (388)
Q Consensus        77 -----------------~------~~WR~~f~~~~-i~~l~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~  131 (388)
                                       .      .+||++|+... +..++.+ +....+||.|.    +++.                +
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~----------------~  241 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS----------------D  241 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc----------------c
Confidence                             0      25777775433 3332322 22334555221    0000                0


Q ss_pred             CCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016515          132 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL  211 (388)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (388)
                                    ++..                    ......+.+++++......+..+.+.......+.  +..+.+
T Consensus       242 --------------~~~~--------------------~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~l  285 (438)
T PRK10133        242 --------------AKQG--------------------SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWS--YLIRYA  285 (438)
T ss_pred             --------------cccc--------------------chhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence                          0000                    0000111222222211111111111111111111  111111


Q ss_pred             cCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 016515          212 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL  291 (388)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (388)
                      .++.       .+   .+....-.......++..+|.++++++.||+|||+++..+..++...++........ ......
T Consensus       286 ~~~~-------~g---~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  354 (438)
T PRK10133        286 VEEI-------PG---MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIAL  354 (438)
T ss_pred             hhhc-------CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHH
Confidence            1100       00   111111222345566778999999999999999998877766554433332222221 122222


Q ss_pred             HHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHH
Q 016515          292 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVIL  355 (388)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i  355 (388)
                      ....++....++..+....|.+|.+ .+++.++.. ...+|+.+.|.+.+.+.+..+ ....+++
T Consensus       355 ~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence            3334455566677778888888764 567777775 455678888888887767654 3344443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.65  E-value=1.2e-13  Score=130.91  Aligned_cols=261  Identities=12%  Similarity=0.085  Sum_probs=156.3

Q ss_pred             CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Q 016515           13 SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT---------------   76 (388)
Q Consensus        13 ~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~---------------   76 (388)
                      .++++.+++.|++.|+|.|.. +...+++.|..|+++|++..+..+..+.+|..+++.++..+..               
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~  170 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS  170 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence            568999999999999999975 6677899999999999999999999999999999888765531               


Q ss_pred             -----------ccchHHHHHHhhHHHHHHHHHH--hcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhh
Q 016515           77 -----------RLNWRWLLAFSSVPSFALLLFY--GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAI  143 (388)
Q Consensus        77 -----------~~~WR~~f~~~~i~~l~~~~~~--~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (388)
                                 ..+||++|.+.++..++..++.  ...||.++     ++  +              +            
T Consensus       171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~--------------~------------  217 (410)
T TIGR00885       171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--A--------------K------------  217 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--c--------------c------------
Confidence                       1369999988877666543333  22444221     00  0              0            


Q ss_pred             hhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 016515          144 KENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVL  223 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (388)
                      + ...    +                   ...+.+++++......+..+.+.+.....+  .++........        
T Consensus       218 ~-~~~----~-------------------~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~--s~l~~y~~~~~--------  263 (410)
T TIGR00885       218 Q-ISF----S-------------------ASLSRLARIRHYREGVIAQFFYVGVQIMCW--TFIIQYAVRLI--------  263 (410)
T ss_pred             c-ccc----h-------------------hhHHHHHhChhHHHHHHHHHHHHHHHHHHH--HHHHHHHhhcc--------
Confidence            0 000    0                   000111222211111111122222221111  11111111000        


Q ss_pred             ccCCCCC-chhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhccc
Q 016515          224 HADKSKD-NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTI  302 (388)
Q Consensus       224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (388)
                       .....+ ...+..  .......+|.++++++.||+++|+.+..+..++.++.+......+.. .........++....+
T Consensus       264 -~~~~~~~a~~~~~--~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~f  339 (410)
T TIGR00885       264 -PGMTAGFAANYNI--GAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMSLMF  339 (410)
T ss_pred             -CCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence             000101 111111  12244578899999999999999988777766666555444433322 2233333345556677


Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      +..+....+.++++.+..+.+++..+  +|+.+.|.+.+.+.|.
T Consensus       340 p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       340 PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            88888999999998887777777766  9999999999988874

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=6.7e-14  Score=133.16  Aligned_cols=141  Identities=9%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-hh---HHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SA---VVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ..+..+..+++.+..+++.||+|||++++.+.+...+......... ..   +......+..........+....+.+|.
T Consensus       257 ~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~  336 (418)
T TIGR00889       257 MSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKE  336 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788889999999999999999888776665543333321 11   1111111122222222234445678999


Q ss_pred             cccchhhHHHHHHH-HHHhHhHhHHHHHHHHhhcccc------hhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          313 YPTSARTTGFGVAS-SLGKVGGMVCPLVAVGLVTSCH------LRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       313 ~p~~~R~~~~~~~~-~~~~i~~~~~p~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      +|++.|+++.|+.+ ....+|+.++|.+.+.+.+..+      ....+.+.+++.+++.+..+++.||+.+.
T Consensus       337 ~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       337 VPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999997 4567899999999998877643      23456667777777777777777887543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.64  E-value=1.6e-13  Score=129.30  Aligned_cols=281  Identities=12%  Similarity=0.033  Sum_probs=151.8

Q ss_pred             hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhH
Q 016515           11 SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSV   89 (388)
Q Consensus        11 ~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i   89 (388)
                      ..+++++.+++.|++.|++.+.. +...++..++  +++|++..+.......+|..++++++..+.+.+|||..|++.++
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            34688999999999999987754 5555566665  34567767777778889999999999998888999999988776


Q ss_pred             HHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccccccc
Q 016515           90 PSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLK  169 (388)
Q Consensus        90 ~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
                      ..++..+...+.||.++    +++.+                            + +.     +                
T Consensus       167 ~~~~~~~~~~~~~~~~~----~~~~~----------------------------~-~~-----~----------------  192 (382)
T PRK11128        167 GVASMLLGQLLRPTIMP----QGESR----------------------------Q-QE-----S----------------  192 (382)
T ss_pred             HHHHHHHHHHccCCCCC----ccccc----------------------------c-cc-----c----------------
Confidence            54444333344454321    00000                            0 00     0                


Q ss_pred             ccchhhhhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHH
Q 016515          170 SGFSSFFMLFSRK-LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGL  248 (388)
Q Consensus       170 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (388)
                      +...+++++++++ .+.......+..... ..++.  +....+. +.        +.  + ....-....+..+..++..
T Consensus       193 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~~~~-~~--------g~--s-~~~~g~~~~~~~~~~~~~~  257 (382)
T PRK11128        193 AGWPAWKALLKEPTVWRFLLCVSLLQGSH-AAYYG--FSAIYWQ-AA--------GY--S-ASTIGYLWSLGVVAEVLIF  257 (382)
T ss_pred             cccchHHHHHcChhHHHHHHHHHHHHHHh-HhHHH--HHHHHHH-HC--------CC--C-HhHHHHHHHHHHHHHHHHH
Confidence            0001122333322 222111111111111 11111  1111111 00        00  1 1111112224455677888


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHH
Q 016515          249 ILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL  328 (388)
Q Consensus       249 ~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~  328 (388)
                      ++.+++.||+|+|+.+..+....++..+.....++.+......+...++.....+....+..+. |++.+++..++.+..
T Consensus       258 ~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  336 (382)
T PRK11128        258 AFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSAL  336 (382)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHH
Confidence            8899999999999998877766655544443333322222222222222111222233445565 555678888887755


Q ss_pred             H-hHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 016515          329 G-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  364 (388)
Q Consensus       329 ~-~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~  364 (388)
                      + .+|..++|.+.+.+.+..+. ..++..+++.+++.
T Consensus       337 ~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        337 AMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            4 45667899999988887653 34444444444443

>PRK10054 putative transporter; Provisional

Probab=99.63  E-value=5.1e-14  Score=133.08  Aligned_cols=293  Identities=13%  Similarity=0.097  Sum_probs=163.0

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++.+++++++.++++|++.|.+.+.. +....+..|..|+++|++..++......+|..+++.++..+.. .+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~  162 (395)
T PRK10054         84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL  162 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence            345566778899999999999998876654 5567788999999999999999999999999999998877653 69999


Q ss_pred             HHHHhhHHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           83 LLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        83 ~f~~~~i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      .|.+.++..++..+ ..+++||+++    +++.++                         +   +.     .        
T Consensus       163 ~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~~~-------------------------~---~~-----~--------  197 (395)
T PRK10054        163 PFWLAAICSAFPLVFIQIWVQRSEK----AIATET-------------------------G---SV-----W--------  197 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc----ccccch-------------------------h---hh-----h--------
Confidence            99988777665433 3344555431    000000                         0   00     0        


Q ss_pred             ccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANV-FSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFI  239 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
                                  +.++.++ ++.+.......+..+... +..+...+... .. +.          ..+ ..........
T Consensus       198 ------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-~~----------~~~-~~~~g~~~~~  252 (395)
T PRK10054        198 ------------SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMV-VA-DS----------DFA-EKVVAVVLPV  252 (395)
T ss_pred             ------------hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hc-cc----------chH-HHHHHHHHHh
Confidence                        0001111 121111111111111110 10111111111 10 00          000 0111111222


Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ..+...+.....+.+.||.+||+.+..+.....+....+... ++.+..........++.....+.......+..|++.|
T Consensus       253 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~  332 (395)
T PRK10054        253 NAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMK  332 (395)
T ss_pred             hhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccc
Confidence            223334455677889999999998877665444433333322 2222111222222222222233455678889999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  368 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  368 (388)
                      ++..+.. +.+++|..++|.+.+.+.|..+....+++.+++..++.+...
T Consensus       333 ~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        333 ASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             eehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            9998865 467899999999999998876544445554444444443333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.63  E-value=4e-13  Score=127.06  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=83.9

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ..++.++..++++++.+++.|+++|++.+.. +....+..|..|+++|++..+..+.+..+|..+++.++..+.+..+||
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~  162 (394)
T PRK11652         83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR  162 (394)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence            3556677778899999999999999998764 445567789999999999999999999999999999888877778999


Q ss_pred             HHHHHhhHHHHHH-HHHHhcCCCCc
Q 016515           82 WLLAFSSVPSFAL-LLFYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~-~~~~~~~pESp  105 (388)
                      +.|++.++..++. ....++.||+|
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9999887766544 34455678875

>TIGR00896 CynX cyanate transporter

Probab=99.61  E-value=1.7e-13  Score=127.78  Aligned_cols=268  Identities=16%  Similarity=0.160  Sum_probs=146.0

Q ss_pred             hhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhccc--chH
Q 016515            5 VAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL--NWR   81 (388)
Q Consensus         5 i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~--~WR   81 (388)
                      ++.+.. .+++++.+++.|+++|++.|.. +....++.|+.| ++|+++.+..+....+|..+++.+...+.+..  +||
T Consensus        77 ~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~  154 (355)
T TIGR00896        77 AGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQ  154 (355)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            334444 6789999999999999998864 445567788886 68999999999999999999888876665443  499


Q ss_pred             HHHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccc
Q 016515           82 WLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMT  161 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
                      +.|.+.++..++...  .++||+++      +.+              ++.+            .+     +        
T Consensus       155 ~~f~~~~~~~~~~~~--~~~~~~~~------~~~--------------~~~~------------~~-----~--------  187 (355)
T TIGR00896       155 QALAWWALPALLALL--AWIPQVRR------RVA--------------ANQT------------TT-----R--------  187 (355)
T ss_pred             HHHHHHHHHHHHHHH--HHhhhhcc------ccC--------------CCCC------------CC-----C--------
Confidence            998776655443322  23454321      000              0000            00     0        


Q ss_pred             ccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHH
Q 016515          162 RKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIA  240 (388)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
                              .   ..++.++ ++.+..    ..........++....+.+.+..+..        .  + .........+.
T Consensus       188 --------~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lp~~~~~~g--------~--~-~~~~g~~~~~~  241 (355)
T TIGR00896       188 --------L---TPVRIWRSPLAWQV----TVFFGLQSGLYYSLIGWLPAILISHG--------A--S-AATAGSLLALM  241 (355)
T ss_pred             --------C---CCchhhcCHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcC--------C--C-HHHHHHHHHHH
Confidence                    0   0011111 111111    11111122222222222221111100        0  0 01111223445


Q ss_pred             HhhhhHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecc-cccccchh
Q 016515          241 SLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP-EIYPTSAR  318 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-El~p~~~R  318 (388)
                      .++.+++.++.+++.||+ +||+.+..+..+..+....+.......... ......++....++....... +..|++.+
T Consensus       242 ~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~  320 (355)
T TIGR00896       242 QLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQA  320 (355)
T ss_pred             HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHH
Confidence            667889999999999999 556555555444444333333221111111 111122222222333333444 34456778


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~  348 (388)
                      ++..++.+.++.+++.++|.+.+.+.+..+
T Consensus       321 g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       321 AALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.59  E-value=2.4e-15  Score=137.33  Aligned_cols=102  Identities=23%  Similarity=0.337  Sum_probs=86.2

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL-NWR   81 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~WR   81 (388)
                      .+++++++++..|+++.++|-+.|+|++.. |.+.+++++.+|..+|+++.++++.....|..+|.+.+..+.... .||
T Consensus       109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr  188 (493)
T KOG1330|consen  109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR  188 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence            577889999999999999999999999986 788899999999999999999999999999888776666555433 399


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCc
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESP  105 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp  105 (388)
                      |.|...++.+++..+ ...+++|.+
T Consensus       189 ~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  189 WAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             EEEEeehHHHHHHHHHHHhhccCcc
Confidence            999999998887644 456677744

>TIGR01272 gluP glucose/galactose transporter

Probab=99.56  E-value=2.5e-12  Score=117.22  Aligned_cols=272  Identities=13%  Similarity=0.117  Sum_probs=156.3

Q ss_pred             hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Q 016515           11 SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-------------   76 (388)
Q Consensus        11 ~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-------------   76 (388)
                      +...+|..+++.=++.|.|.+.. +.+.+|+++..|++++.+.+++.+.++++|.+++|.++..+..             
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999974 7888999999999999999999999999999999999876542             


Q ss_pred             ---ccchHHHHHHhhHHHHHHHHH--HhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchh
Q 016515           77 ---RLNWRWLLAFSSVPSFALLLF--YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL  151 (388)
Q Consensus        77 ---~~~WR~~f~~~~i~~l~~~~~--~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (388)
                         ..+||+++++.+...++..+.  +..+||..+      +.++                           +..+.   
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~---------------------------~~~~~---  128 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA---------------------------RVSSG---  128 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc---------------------------ccccc---
Confidence               147999988555443333222  333565321      0000                           00000   


Q ss_pred             hhccccccccccccccccccchhhhhhcc-hhHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcCCCCCCCCcccccCCC
Q 016515          152 LRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFAN--VFSYYGAVLLTSKLSSGDNKCGSKVLHADKS  228 (388)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (388)
                        +.          . +      .+..++ +..... .+..+.+.+.  .+..|...++...     ...     +. ..
T Consensus       129 --~~----------~-~------~~~~~~~~~~~l~-~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~-----g~-s~  177 (310)
T TIGR01272       129 --DT----------T-Q------KTSAFQFTHLVLG-ALGIFVYVGAEVSAGSFLVNFLSDP-----HAL-----GL-PE  177 (310)
T ss_pred             --cc----------c-c------hhhHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-----ccC-----CC-CH
Confidence              00          0 0      000111 111111 1111112211  1222222222110     000     00 01


Q ss_pred             CCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeee
Q 016515          229 KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      .+..  ........+..+|.++++++.||+|+|+.+..+..++.+..+......... .........++....++.....
T Consensus       178 ~~a~--~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~  254 (310)
T TIGR01272       178 DQAA--HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSL  254 (310)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  112333445678999999999999998887766655555443333222221 1222223335555666777777


Q ss_pred             cccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHH
Q 016515          309 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI  354 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~  354 (388)
                      ..+.+|.+ .+++.++. ..+.+|+.+.|.+.+.+.|..+...+++
T Consensus       255 a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       255 ALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            88888765 45666664 6788999999999998877665544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.55  E-value=9.5e-13  Score=125.61  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=87.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      +..+...++.++.+++.||+|||+.+..+..+.++......+..+.+......................+.+|.+|++.|
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  349 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS  349 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence            34556678899999999999999988776665555444443333332222211111111111122344678899999999


Q ss_pred             hHHHHH-HHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccc
Q 016515          319 TTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       319 ~~~~~~-~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      +++.+. .+..+.+|+.++|.+.+.+.+..+....+.+.+++.++..++.++..++
T Consensus       350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998776 4566789999999999998887665566776677766665555554433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.54  E-value=4e-12  Score=120.08  Aligned_cols=276  Identities=15%  Similarity=0.006  Sum_probs=144.8

Q ss_pred             HHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHHHHHHHH
Q 016515           20 VIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFY   98 (388)
Q Consensus        20 ~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l~~~~~~   98 (388)
                      ...-++.++..... +....+..|..++++|+...+....+..+|.++++.....+.+..|||..|++.++..++..+..
T Consensus       101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333 44556778999999999888888888899999998877777778899999999887766654444


Q ss_pred             hcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhh
Q 016515           99 GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFML  178 (388)
Q Consensus        99 ~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (388)
                      .+++|.++     ++.++.                        + +  +                        ....+++
T Consensus       181 ~~~~~~~~-----~~~~~~------------------------~-~--~------------------------~~~~~~~  204 (390)
T TIGR02718       181 LWLKDRAV-----ASPEAP------------------------L-A--R------------------------RASLFRF  204 (390)
T ss_pred             HHcCCCCc-----Cccccc------------------------h-h--h------------------------HHHHHHH
Confidence            44443321     000000                        0 0  0                        0011222


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHH-hhhhHHHHHHHHHHHH
Q 016515          179 FSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIAS-LAELPGLILSAIIVDK  257 (388)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~  257 (388)
                      ++++..+...............++.  +....+.+ .+          .+. ...-......+ ...+++.++.+++.||
T Consensus       205 l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~-~G----------~s~-~~ig~~~~~~~~~~~~~g~~~~g~l~~r  270 (390)
T TIGR02718       205 FRRPLAWSLLALALLSAMTAVSGFG--LSKLYLVD-AG----------WPL-EWIGRLGMAGGAVTVLLGCGGGAWLVRR  270 (390)
T ss_pred             HcCcCHHHHHHHHHHHHHHHHHHHH--HhhHHHHh-cC----------CCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222222111112222  11111211 00          010 11111111222 3446778899999999


Q ss_pred             hchhHHHHHHHHHHHHH-HHHHhhhc----hhHHHHHHHHHH-HHhhhcccceeeeeccccccc-chhhHHHHHHHHHHh
Q 016515          258 IGRKLSMVLMFVSACIF-LLPLVFHQ----SAVVTTVLLFGV-RMCVTGTITVATIYAPEIYPT-SARTTGFGVASSLGK  330 (388)
Q Consensus       258 ~gRr~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~El~p~-~~R~~~~~~~~~~~~  330 (388)
                      +|+|+.+..+.....+. ........    ............ .+......+..+....+..++ +.++++.++.+++..
T Consensus       271 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (390)
T TIGR02718       271 AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRD  350 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            99999887665544221 11111111    111111111111 111111223334444455555 899999999999999


Q ss_pred             HhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 016515          331 VGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       331 i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                      +|+.++|.+.+.+.+..+....+...+++.+++.+
T Consensus       351 lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       351 LGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999888766544555555555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.50  E-value=6.7e-12  Score=118.80  Aligned_cols=132  Identities=12%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..+...++.+..+++.||+|||+.++.+..+.++.........+.+......+....+..........+..|..|++.
T Consensus       261 ~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  340 (396)
T TIGR00882       261 TMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL  340 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence            33455667788889999999999998877666555443333333332222222222112211111233446788899999


Q ss_pred             hhHHHHH-HHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 016515          318 RTTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  369 (388)
Q Consensus       318 R~~~~~~-~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  369 (388)
                      |+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+++.++..+...+
T Consensus       341 ~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       341 SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9998877 466778999999999999988766666777777776666655544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.47  E-value=8.9e-11  Score=112.54  Aligned_cols=146  Identities=20%  Similarity=0.286  Sum_probs=95.5

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHhchh--HHHHHHHHHHHHH-HHHHh-h------hchhHHHHHHHHHHHHhhhccc
Q 016515          233 LYVDVFIASLAELPGLILSAIIVDKIGRK--LSMVLMFVSACIF-LLPLV-F------HQSAVVTTVLLFGVRMCVTGTI  302 (388)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr--~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~  302 (388)
                      .....++..+.+++|+++.+++.||+|.|  ++++.+.+...++ ...+. +      ..+.+...++......+..+..
T Consensus       319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q  398 (477)
T PF11700_consen  319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ  398 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence            33445667788899999999999999988  6666555444222 22222 0      1222221122222223334445


Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHhhcccccccCcch
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR-LAVILFEVVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      +..-++.+|+.|+...+.-.|+....++..++++|.+.+.+.+.++.. ..++...++.+++.+ .++.+++.+++..
T Consensus       399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~-ll~~v~~~~g~~~  475 (477)
T PF11700_consen  399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI-LLFFVDVEKGRED  475 (477)
T ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH-HHhhccchhhhhc
Confidence            667789999999999999999999999999999999999888876643 334434444445544 4455666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.47  E-value=7.8e-13  Score=127.39  Aligned_cols=344  Identities=17%  Similarity=0.194  Sum_probs=179.5

Q ss_pred             hhhhhhhhhhcCccHHHHHH-HHHHhhccCcchh-hHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016515            2 VTSVAGLLSSFSPNYVSLVI-FRCFVGVGLGGVP-VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN   79 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~-~R~l~G~~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~   79 (388)
                      +.+++-+++.|+++++++++ .=++.|+|.|... .+...+..++ +|+|+.+.++...+.++|..+-+++...+.+..|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            45778888899999988666 6677889998753 4444555555 5679999999999999999999999988888999


Q ss_pred             hHHHHHHhhHHHHHHHHH-HhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhc---c
Q 016515           80 WRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRD---T  155 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  155 (388)
                      ||..+++.+...+-.+.. ...-|.+|+-   +.+.++.++..++.     .+..+..    .+.+..+......+   .
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~  266 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKDLRNSAAS-----VESTPKP----VELRISERDSGLKKLSLS  266 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cchhhhhhcccccc-----ccccccc----cccccccCCCCCCccccc
Confidence            999988877766544333 2333433321   11111111110000     0000000    00000000000000   0


Q ss_pred             cccccccc-ccccccccchhhhhhcchhHHH-HHHHHHH-HHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCch
Q 016515          156 HMLSMTRK-ITDKLKSGFSSFFMLFSRKLIR-TTLLLWV-LFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNS  232 (388)
Q Consensus       156 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (388)
                      +.....+. .+.+........ .++..+..+ +..+++. ......+.++...+..+......           ...+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~-----------g~~~~~  334 (509)
T KOG2504|consen  267 NLATLKRGPDKWRNSPLQAFL-SMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSL-----------GLSSND  334 (509)
T ss_pred             chhhhhhCCccccccchhhhh-hhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCChhh
Confidence            00000000 000000000000 011111111 1111111 12223333333333333332110           011112


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecc
Q 016515          233 LYVDVFIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~d~~g--Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      ......+.++..++|-++.|++.|+-.  ++.....+.+++++.........+.+..........++.....+....+..
T Consensus       335 aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~  414 (509)
T KOG2504|consen  335 AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILV  414 (509)
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222344557778999999999999987  344445555555554433223333222222211122222222334456889


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHhhcc
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR-LAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~  370 (388)
                      |+.+.+.=+.+.|+...+..++..++|.+.+.+.|.++.+ ..+...+++.++++++.++.
T Consensus       415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888876643 34455556666666555544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.44  E-value=4.5e-11  Score=115.59  Aligned_cols=91  Identities=11%  Similarity=0.012  Sum_probs=76.6

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc---hhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH---RGRWMVALSAFWTAGTIFEASLAWVVMTRL   78 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~   78 (388)
                      .+++.++.+++++++.++++|++.|++.|.. +...++++|+.|+++   |+...+++.....+|..+++.++..+.+..
T Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        89 LMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677788888999999999999999875 677788999998764   888889999999999999999988887778


Q ss_pred             chHHHHHHhhHHHHH
Q 016515           79 NWRWLLAFSSVPSFA   93 (388)
Q Consensus        79 ~WR~~f~~~~i~~l~   93 (388)
                      +||+.|.+.++..++
T Consensus       169 g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       169 GYHVGFNLAAVGMVI  183 (475)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999887754433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.42  E-value=1e-10  Score=113.41  Aligned_cols=297  Identities=15%  Similarity=0.100  Sum_probs=174.4

Q ss_pred             ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHH
Q 016515           14 PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF   92 (388)
Q Consensus        14 ~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l   92 (388)
                      .+.+.+++.-++.|++.+.. |+-.+.+.|..|+++...++++.+..+.++.++||.+++.+....|=.+.|.+.++--+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl  180 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL  180 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999998765 77788999999999999999999999999999999999888777788888888776544


Q ss_pred             HHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccc
Q 016515           93 ALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGF  172 (388)
Q Consensus        93 ~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
                      +........+..++    +++                  .+          + +...   ++                -.
T Consensus       181 ~~i~~l~~~~~~~~----~~~------------------~~----------~-e~~~---~~----------------l~  208 (524)
T PF05977_consen  181 ISILALLRWKPPPP----PSS------------------LP----------R-ERFF---SA----------------LR  208 (524)
T ss_pred             HHHHHHHHcccccc----ccc------------------cc----------h-hhhh---hh----------------HH
Confidence            33332222221110    000                  00          0 0000   00                00


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHH
Q 016515          173 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSA  252 (388)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (388)
                      ..++...+.+..+..++...........++.   ..+.+..+       ..+   .......+.....+++.++|+++.+
T Consensus       209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a---LlPl~a~~-------~l~---~~a~~yGll~a~~gvGai~Gal~~~  275 (524)
T PF05977_consen  209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWA---LLPLFARD-------VLG---GGASGYGLLLAAFGVGAILGALLLP  275 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhhhHHHH---hhhHHHHH-------HhC---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122233333333333222211111111111   11111100       000   0011112233445667788888888


Q ss_pred             HHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHh
Q 016515          253 IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVG  332 (388)
Q Consensus       253 ~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~  332 (388)
                      .+.+|+++++.+..+.+..+++.+.+....+.+.....++...++.....+...+..-+..|.++||+..++...+...+
T Consensus       276 ~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~  355 (524)
T PF05977_consen  276 RLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGG  355 (524)
T ss_pred             HhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHH
Confidence            88888888887777777666666665554444443333443333333333445567788999999999999999988887


Q ss_pred             HhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc-ccccc
Q 016515          333 GMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF-PFETM  375 (388)
Q Consensus       333 ~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~pet~  375 (388)
                      ..++..+.+.+.+..+....+.+.++..+++.++.... .|+.+
T Consensus       356 ~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~  399 (524)
T PF05977_consen  356 MPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGE  399 (524)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            77888888887776666655555555444554444432 34444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.41  E-value=5.6e-11  Score=115.76  Aligned_cols=120  Identities=15%  Similarity=0.130  Sum_probs=87.3

Q ss_pred             hhhhhhhhhcC------ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016515            3 TSVAGLLSSFS------PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM   75 (388)
Q Consensus         3 ~~i~~~l~~~~------~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~   75 (388)
                      .+++.++++++      ++++.++++|+++|+|.+.. +.....+.+|+| ++||++.++...+..+|..+.+.+...+.
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777776      78999999999999998764 555667789997 68999999999999999986555544433


Q ss_pred             cccchHHHHHHhhHHHHHH-HHHH--hcCCCCchHHHhccChHHHHHHHHHH
Q 016515           76 TRLNWRWLLAFSSVPSFAL-LLFY--GLAPESPRYLCAKARTVDAHRILEKM  124 (388)
Q Consensus        76 ~~~~WR~~f~~~~i~~l~~-~~~~--~~~pESp~~l~~~~~~~~a~~~l~~~  124 (388)
                      . .+|+..|++.++.+++. ++..  ...||+|+|...++|.+|+++.+++.
T Consensus       180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~  230 (591)
T PTZ00207        180 S-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLM  230 (591)
T ss_pred             H-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhh
Confidence            2 47888887777665544 2222  34678888876776666666665443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.40  E-value=1.4e-10  Score=112.48  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=73.3

Q ss_pred             hhhhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            2 VTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         2 ~~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      +..+++++++-++|..+++++-.+.|+|.|........++|..|.|+|+....+...........++.++..+..+.+||
T Consensus       117 l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  117 LGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             HHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence            46789999999999999999999999998765544555799999999987776666555555555666666666677999


Q ss_pred             HHHHHhhHHHHHHH
Q 016515           82 WLLAFSSVPSFALL   95 (388)
Q Consensus        82 ~~f~~~~i~~l~~~   95 (388)
                      |.|++..+...+.+
T Consensus       197 w~~~~~~i~~~i~~  210 (599)
T PF06609_consen  197 WIFYIFIIWSGIAL  210 (599)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999887655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.40  E-value=1.2e-10  Score=112.84  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             hhhhhhhhhcCccHHH-HHHHHHHhhccCcch-hhHHHHHHhhcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016515            3 TSVAGLLSSFSPNYVS-LVIFRCFVGVGLGGV-PVFLAYFLEFVPVS--HRGRWMVALSAFWTAGTIFEASLAWVVMTRL   78 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~-l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~   78 (388)
                      ..+++++++++++... ++++|+++|+|.|.. +...+++.|++|++  +|++..+.+..+..+|..+++.++.++.+..
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567777788776554 558999999999975 67778999999987  4577788899999999999999998888889


Q ss_pred             chHHHHHHhhHH
Q 016515           79 NWRWLLAFSSVP   90 (388)
Q Consensus        79 ~WR~~f~~~~i~   90 (388)
                      |||+.|++..+.
T Consensus       171 gw~~~F~i~~i~  182 (489)
T PRK10207        171 GYSVTYNLCGAG  182 (489)
T ss_pred             ChHHHHHHHHHH
Confidence            999999987553

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.39  E-value=8.9e-12  Score=116.31  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++++++++++..+.+.|++.|++.|+..+...|+..|+|+++|+++.++...+..+|.+++++++.. ...+|||.
T Consensus       102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~  180 (511)
T TIGR00806       102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS  180 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence            47788899999999999999999999999866667899999999999999999999999999999999888 55789998


Q ss_pred             HHHHhhH---HHHHHHHHHhcCCCCc
Q 016515           83 LLAFSSV---PSFALLLFYGLAPESP  105 (388)
Q Consensus        83 ~f~~~~i---~~l~~~~~~~~~pESp  105 (388)
                      .+.+.-+   ...+.+++.+++|-.+
T Consensus       181 y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       181 YSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            7654432   3334566677888433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.37  E-value=7.9e-11  Score=114.59  Aligned_cols=90  Identities=12%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             hhhhhhhhcCc-cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016515            4 SVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMVALSAFWTAGTIFEASLAWVVMTRLN   79 (388)
Q Consensus         4 ~i~~~l~~~~~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~   79 (388)
                      .++.++.++++ +...+.++|+++|++.|.. +...+++.|++|+++  |+...++++.+..+|..+++.++.++.+..|
T Consensus        99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g  178 (500)
T PRK09584         99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG  178 (500)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            44566666764 5667888999999998865 666678999998654  4456677888999999999999988888889


Q ss_pred             hHHHHHHhhHHHHH
Q 016515           80 WRWLLAFSSVPSFA   93 (388)
Q Consensus        80 WR~~f~~~~i~~l~   93 (388)
                      ||+.|.+.++..++
T Consensus       179 ~~~~F~i~~i~~~i  192 (500)
T PRK09584        179 WSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988764433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.36  E-value=2.6e-11  Score=116.92  Aligned_cols=308  Identities=10%  Similarity=0.056  Sum_probs=156.7

Q ss_pred             CccHHHHH-HHHHHhhccCcch-hhHHHHHHhhcccCchhhHH---HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHh
Q 016515           13 SPNYVSLV-IFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM---VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFS   87 (388)
Q Consensus        13 ~~~~~~l~-~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~---~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~   87 (388)
                      .++...+. +++++.+++.+.. ...-.+..|..+ +++....   +.......+|.++++.++..+.+..+||..|++.
T Consensus       116 ~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~  194 (468)
T TIGR00788       116 KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLIT  194 (468)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence            35544444 4888898887765 566788999988 4443332   3333334479999999888888888999999888


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccccc
Q 016515           88 SVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDK  167 (388)
Q Consensus        88 ~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
                      ++..++..+...++||.+.....+.+ ++...        +           ......... +                .
T Consensus       195 a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~--------~-----------~~~~~~~~~-~----------------~  237 (468)
T TIGR00788       195 AALLLLQLFVSNLSKERRAFVRPRIG-TYLEM--------N-----------MALLTLGVL-A----------------N  237 (468)
T ss_pred             HHHHHHHHHHHHhccccccccccccc-ccchh--------h-----------hhhhhhhHH-H----------------H
Confidence            77766666666778886421000000 00000        0           000000000 0                0


Q ss_pred             ccccchhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhH
Q 016515          168 LKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELP  246 (388)
Q Consensus       168 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (388)
                      .+.........++ +..++...+..+.+. ..   .+  .....+.     ......+.  + ...........+++.++
T Consensus       238 ~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~---~~--~~~~~f~-----~~~~~lG~--s-~~~~G~~~~~~~v~~i~  303 (468)
T TIGR00788       238 VKVQILGLRGAIQLLEIAKPLIFIFLSYA-NL---PG--ASGSVFC-----ATTQCLPG--G-PSFSGMSKVVGNLGSLC  303 (468)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hc---CC--CCceeEE-----EEcccCCC--C-cchhhhHHHHHHHHHHH
Confidence            0000011111222 222221111111000 00   00  0000000     00000011  1 11122233445677788


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-h---------chhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          247 GLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-H---------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       247 ~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      +..+.+.+.+|++.|+.+..+.+...+..+.... .         .+.+..........+.....+.....+..++.|++
T Consensus       304 g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~  383 (468)
T TIGR00788       304 GVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG  383 (468)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC
Confidence            8888888889999999888777766554432210 0         11111111111111221222234567899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-----hh---HHHHHHHHHHHHHHHHhhccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-----LR---LAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-----~~---~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      .+++..|+.+++..+|+.+++.+.+.+.+..+     .+   ....+..++.++....+. ++|+
T Consensus       384 ~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~-llP~  447 (468)
T TIGR00788       384 CESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLH-LLPR  447 (468)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            99999999999999999999987776665433     12   222333444455555454 4564

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.34  E-value=9.3e-10  Score=105.81  Aligned_cols=106  Identities=14%  Similarity=0.046  Sum_probs=67.0

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh-hh-chhHHHHHHHHHHHHhhhcccceeeeecccccc----
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-FH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP----  314 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p----  314 (388)
                      .+..+++..+.+++.||+|||+.+..+..+..+....+. .. ++.+......+...++.....+..+.+.+|..+    
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            455677888889999999999988776654443222222 22 222222222222233333444667888888876    


Q ss_pred             ---cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          315 ---TSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       315 ---~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                         .+..+...|+.+.+..+|..++|.+.+.+.+.
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               34456667888888889999998888776654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.32  E-value=5.4e-11  Score=118.54  Aligned_cols=89  Identities=12%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhccc----------------
Q 016515           16 YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL----------------   78 (388)
Q Consensus        16 ~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~----------------   78 (388)
                      +..++++|+++|+|.+.. +...+|+.|++|+++|+++.++.+....+|..++++++..+.+.+                
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~  251 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT  251 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence            567889999999999875 667789999999999999999999999999999998887765321                


Q ss_pred             ------chHHHHHHhhHHHHHHHHHHhcCCCC
Q 016515           79 ------NWRWLLAFSSVPSFALLLFYGLAPES  104 (388)
Q Consensus        79 ------~WR~~f~~~~i~~l~~~~~~~~~pES  104 (388)
                            +||..|++.++.+++..+.++++||.
T Consensus       252 dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       252 DPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                  38888988888877765555666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.8e-11  Score=109.99  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH-RGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~-Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      ...+++-+|..+++++++.|.+||+|.+.. .+..+++++.+|.++ ||++++..-.+.++|.+++|+.+.++-+..|.+
T Consensus       147 f~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~  226 (464)
T KOG3764|consen  147 FLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS  226 (464)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence            456778889999999999999999998765 466788999999865 799999999999999999999999988889999


Q ss_pred             HHHHHhhHHHHHHHHHHhcCC
Q 016515           82 WLLAFSSVPSFALLLFYGLAP  102 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~~~~~~p  102 (388)
                      .+|.+.++..++-..+.+++-
T Consensus       227 aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  227 APFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHhee
Confidence            999999998888766665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.26  E-value=9.3e-11  Score=93.25  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=95.7

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      .++.+++....+++.||+|||+.+..+.....+..+......+.+......+...++.....+..+.+..|.+|++.|++
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   87 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGV   87 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence            34567788889999999999998887776665555444433333222222333333333344567778999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +.++.+....++..++|.+.+.+.+..+....+.+...+.+++.+..++..|||
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999888877655544566667777777777777777765

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=2.3e-10  Score=102.47  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc---ccc-
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT---RLN-   79 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~---~~~-   79 (388)
                      +++-++-+++.||..++..|++.|+.-|...+.-++++|+.++++|+..++.++..+++|.++||.++.++.+   ..| 
T Consensus       109 a~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~  188 (451)
T KOG2615|consen  109 ALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS  188 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc
Confidence            4555667889999777777999999999877778899999999999999999999999999999999877654   111 


Q ss_pred             -h-HHHHHHhhHHHHH-HHHHHhcCCCC
Q 016515           80 -W-RWLLAFSSVPSFA-LLLFYGLAPES  104 (388)
Q Consensus        80 -W-R~~f~~~~i~~l~-~~~~~~~~pES  104 (388)
                       | -.+-++..+.... .....+++|||
T Consensus       189 ~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  189 YPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence             1 1112222333333 34566789998

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.24  E-value=4.8e-10  Score=106.64  Aligned_cols=139  Identities=13%  Similarity=0.015  Sum_probs=95.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....++..++.+..|++.||+|||+++..+.++.++..+......+........+...++.....+....+.+|.+|++.
T Consensus        50 s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (412)
T TIGR02332        50 TLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF  129 (412)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence            34455667888899999999999999888877766655555444333333333333333333334555567899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      |+++.++.+....+|..++|.+.+++.+.      .+....+.+.++..++..++.+++.||++.
T Consensus       130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999999999899999999888776532      234455666666666665666666788763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.21  E-value=2.4e-09  Score=102.27  Aligned_cols=139  Identities=11%  Similarity=-0.046  Sum_probs=84.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHhhhch---------------------hHHHHHHHHHHH
Q 016515          238 FIASLAELPGLILSAIIVDKIG-RKLSMVLMFVSACIFLLPLVFHQS---------------------AVVTTVLLFGVR  295 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~g-Rr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~  295 (388)
                      .+.++...+.+++--.+.+|+| ||+....+.++.++++....+...                     .+...+......
T Consensus       312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G  391 (477)
T TIGR01301       312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG  391 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence            3334444455666777888998 477777776666665555432110                     011222222222


Q ss_pred             Hhhhcccceeeeecccccccchh--hHHHHHHHHHHhHhHhHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHhhccc
Q 016515          296 MCVTGTITVATIYAPEIYPTSAR--TTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       296 ~~~~~~~~~~~~~~~El~p~~~R--~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      +.....++++|++.+|..|.+.|  |.-+|+-|.+-.+.-++.....+.+.+..+  ....+.+-++..+++++.+++.+
T Consensus       392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            33334567899999999996545  777888888876666665554444333322  22345555677778888888888


Q ss_pred             ccccC
Q 016515          372 FETMG  376 (388)
Q Consensus       372 pet~~  376 (388)
                      |+++.
T Consensus       472 ~~~~~  476 (477)
T TIGR01301       472 PRPRV  476 (477)
T ss_pred             CCCCC
Confidence            88764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00895 2A0115 benzoate transport

Probab=99.21  E-value=3.3e-10  Score=106.86  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=95.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..++..++.++.+++.||+|||+.+..+..+..+..+......+.+......+...++.....+....+.+|.+|++.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34456678889999999999999999988777666555444443333322222223223333344566788999999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |+++.++......+|+.++|.+.+.+.+..+....+.+.+++.++..++.....||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999988887776555444555555555555555555567764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.21  E-value=9.4e-10  Score=106.61  Aligned_cols=136  Identities=13%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....++..++.++.|++.||+|||+++..+.+..++..+......+........+...++.. .......+.+|.+|++.
T Consensus        78 ~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~  156 (476)
T PLN00028         78 IASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA-TFVSCQYWMSTMFNGKI  156 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcChhh
Confidence            34455677889999999999999998887776665555444443333222222222222222 22223346789999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhc----c-----cchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVT----S-----CHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~----~-----~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      |+++.|+.+..+.+|+.+++.+.+.+..    .     .+....+.+.+++.++..+..++++++.
T Consensus       157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            9999999998888888777665543321    1     1333456666666666666666655443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.21  E-value=4.5e-10  Score=105.65  Aligned_cols=141  Identities=16%  Similarity=0.172  Sum_probs=98.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|++.||+|||+.+..+..+..+..+.....++.+......+...++.....+....+..|.+|++
T Consensus        46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  125 (385)
T TIGR00710        46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE  125 (385)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence            34445667888999999999999999998877766655554444333333222222322222233345567889999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      .|+++.++.+....+++.++|.+.+.+.+..+....+++.+++.++..+..++..||++.+
T Consensus       126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999888776655555566666666666666666666776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=5.5e-10  Score=106.03  Aligned_cols=139  Identities=17%  Similarity=0.140  Sum_probs=94.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|++.||+|||+.+..+.++..+..+......+........+...++.....+....+.+|.+|++
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  135 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR  135 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence            34456677889999999999999999998887666555444443333333333333333333333445667899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++.+....+|+.++|.+...+.+..+....+++.+++.++..+...+..||+.
T Consensus       136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999999989999999987766555544445566656555555555555567764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.20  E-value=3.5e-08  Score=92.94  Aligned_cols=138  Identities=18%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHH----HHHhhhcccceeeeecccc
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLFG----VRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El  312 (388)
                      .+..+.+++.....+++..|+|-|++++.+.+..++=+...... ++.+........    -.......+.....|..|.
T Consensus       250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~  329 (400)
T PF03825_consen  250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI  329 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            35567789999999999999999999988877766644444433 332221111111    0111112234456789999


Q ss_pred             cccchhhHHHHHHHHHH-hHhHhHHHHHHHHhhcccchhH------HHHHHHHHHHHHHHHhhccccccc
Q 016515          313 YPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRL------AVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~-~i~~~~~p~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|++.|+++.++.+.+. .+|+.++.++.+.+.+..+...      .+.+.+++.++..++.+++.+|+.
T Consensus       330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            99999999999998875 5899999999999888655332      223344444445444555445543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.17  E-value=2.2e-08  Score=97.07  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hch-hHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      +..+..+++.++.+++.||+|||+.+..+..+..+..+.+..    ... .+...+................+.+.+|..
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344667888888999999999999887666544332222211    112 222212222222233334456677888884


Q ss_pred             c-----cchh--hHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          314 P-----TSAR--TTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       314 p-----~~~R--~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      |     +..|  |...|....+..++..+++.+.+.+.+
T Consensus       354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     4444  445677777788888888888777654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.17  E-value=1.3e-09  Score=100.92  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....+...++.+..|.++||+|||+.++.+..+.++..+...+..+.+......+....+.....+....+.+|.+|++
T Consensus        38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~  117 (352)
T PF07690_consen   38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE  117 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence            44456677889999999999999999888887776665333333233333333333333443444566778999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++.+....+|..++|.+.+.+.+..+....+++.+++.+++.++..++.++++
T Consensus       118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred             hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence            99999999999999999999999888775555556777777777777665444444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.16  E-value=2.4e-08  Score=90.63  Aligned_cols=269  Identities=14%  Similarity=0.143  Sum_probs=155.4

Q ss_pred             cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-------------   77 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~-------------   77 (388)
                      -..+|..++++=|+.|.|.|.. ..+.+|++...|++.-..-+...|.++++|.+++|+++..+..+             
T Consensus       100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            4567889999999999999974 67789999999987777778899999999999999987665331             


Q ss_pred             ------cchHHHHHHhhHHHHHHHHHH--hcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhc
Q 016515           78 ------LNWRWLLAFSSVPSFALLLFY--GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEES  149 (388)
Q Consensus        78 ------~~WR~~f~~~~i~~l~~~~~~--~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (388)
                            -.||+++...+...++..+..  ...||-+.                                       ++.+
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------------~~~~  220 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------------AAPS  220 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------------cccc
Confidence                  136777665554433332222  22232110                                       0000


Q ss_pred             hhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhcCCCCCCCCcccccCC
Q 016515          150 NLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY--YGAVLLTSKLSSGDNKCGSKVLHADK  227 (388)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (388)
                      +              .+   .+.....++++.++.+.-.+..+.+.+.....  +...+....  .+.           .
T Consensus       221 ~--------------~~---~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~--~g~-----------~  270 (422)
T COG0738         221 L--------------GA---SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL--LGL-----------N  270 (422)
T ss_pred             c--------------cc---cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCc-----------c
Confidence            0              00   00001233444455544444444444433222  222222110  000           0


Q ss_pred             CCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeee
Q 016515          228 SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATI  307 (388)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (388)
                      ..+...+  ....-.+..+|-+++.++..|+...+.+.....+..+.++...+.++ ...+...+...++....+|..+.
T Consensus       271 ~~~aa~~--~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ig~F~simfPTIfs  347 (422)
T COG0738         271 EQQAAYY--LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-VVALYALFLIGLFNSIMFPTIFS  347 (422)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHhHHHHHHHHH
Confidence            0111222  22223445778888888889998888777766666555555444333 23334444455666677788888


Q ss_pred             ecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHH
Q 016515          308 YAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI  354 (388)
Q Consensus       308 ~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~  354 (388)
                      ...+..|.+.  ...|..-..+-+||.+.|++.+.+.|..+....+.
T Consensus       348 lal~~l~~~t--s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         348 LALKNLGEHT--SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHhccCccc--cccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            8888888332  33333344456889999999999888765444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.16  E-value=1.8e-09  Score=108.51  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++.++|.++.|+++||+|||+.++++.++.++..+...+..+.+...+..++..++..+..+..+.+.+|.+|++
T Consensus       208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~  287 (742)
T TIGR01299       208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE  287 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            34456777899999999999999999998887766655554444333333333344444455555677889999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      .|++..++...+..+|+++++.+...+.
T Consensus       288 ~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       288 KRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887665444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.15  E-value=2.4e-09  Score=101.28  Aligned_cols=138  Identities=19%  Similarity=0.149  Sum_probs=89.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.++.|.+.||+|||+.++.+..+.++..+......+.+......+....+.....+....+..|.+|++
T Consensus        53 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~  132 (405)
T TIGR00891        53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH  132 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh
Confidence            34456677888999999999999999998877666655554444333332222233333333334455667889999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++.+....+|..++|.+.+.+.+..+  ....+.+..+..++. ++.....||++
T Consensus       133 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            99999999999999999999988776655433  233343333333333 33344457764

>PRK11462 putative transporter; Provisional

Probab=99.15  E-value=5.6e-08  Score=93.78  Aligned_cols=66  Identities=21%  Similarity=0.141  Sum_probs=44.1

Q ss_pred             HHHHhhcc-cCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHhhHHHHHHHHH-HhcCCC
Q 016515           38 AYFLEFVP-VSHRGRWMVALSAFWTAGTIFEASLAWVVMT-------RLNWRWLLAFSSVPSFALLLF-YGLAPE  103 (388)
Q Consensus        38 ~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-------~~~WR~~f~~~~i~~l~~~~~-~~~~pE  103 (388)
                      ++..|.++ +++|++..++-+.+..+|..+++.+...+..       ..+|+....+.++++++...+ ....+|
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            46679887 6899999999888888887776655433221       247888777777766554433 333444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.14  E-value=1.5e-08  Score=97.00  Aligned_cols=258  Identities=17%  Similarity=0.210  Sum_probs=144.5

Q ss_pred             HHHHHHHHhhccCcchh-hHHHHHHhhcc-cCchhhHHHHHHHHHHHHHHHHHHHHHHHh----cc---cchHHHHHHhh
Q 016515           18 SLVIFRCFVGVGLGGVP-VFLAYFLEFVP-VSHRGRWMVALSAFWTAGTIFEASLAWVVM----TR---LNWRWLLAFSS   88 (388)
Q Consensus        18 ~l~~~R~l~G~~~g~~~-~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~----~~---~~WR~~f~~~~   88 (388)
                      .+.+.-++..++....- .-.++..|.++ +++|.+..+.-+.+..+|.++.+.+...+.    +.   .+||+...+.+
T Consensus       105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~  184 (428)
T PF13347_consen  105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA  184 (428)
T ss_pred             HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence            34556666666555432 33467789998 478999999888888888865554443332    11   27999988888


Q ss_pred             HHHHHHHH-HHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcccccccccccccc
Q 016515           89 VPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDK  167 (388)
Q Consensus        89 i~~l~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
                      +..++... ..+..+|.++      +.++                             ++++                  
T Consensus       185 iv~~v~~~i~~~~~ke~~~------~~~~-----------------------------~~~~------------------  211 (428)
T PF13347_consen  185 IVGLVFFLITFFFVKERSV------EVTE-----------------------------QEKK------------------  211 (428)
T ss_pred             HHHHHHhhhhhheeeeccc------cccc-----------------------------cccc------------------
Confidence            87776544 4455677110      0000                             0000                  


Q ss_pred             ccccchhhhhhcchhHHHHHHHHHH-HHHHHHHHH-HHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhh
Q 016515          168 LKSGFSSFFMLFSRKLIRTTLLLWV-LFFANVFSY-YGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAEL  245 (388)
Q Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (388)
                       .+....++.+++.+..+....... .++...... ...++....+..              . +. ......+..+..+
T Consensus       212 -~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~--------------~-~~-~~~~~~~~~~~~~  274 (428)
T PF13347_consen  212 -ISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGN--------------E-GL-ISIFMLIFFVASI  274 (428)
T ss_pred             -cccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC--------------c-hh-hHHHHHHHHHHHH
Confidence             000012233443333332222221 122221111 111222222211              0 01 1112334566678


Q ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHhhhcccceeeeeccccccc-------c
Q 016515          246 PGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT-------S  316 (388)
Q Consensus       246 ~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~-------~  316 (388)
                      ++..+.++++||+|||+.+..+..+.++..+.+...  .+.+...........+....+...+.+.+|+.+.       +
T Consensus       275 v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r  354 (428)
T PF13347_consen  275 VGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRR  354 (428)
T ss_pred             HHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCC
Confidence            888999999999999999988887776655554432  2333333333444444455567788999999873       4


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      ..|.-.|+.+.+.+++..+++.+.+.+.+
T Consensus       355 ~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  355 REGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             chHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            45777888888888888888877766544

>PRK10054 putative transporter; Provisional

Probab=99.14  E-value=1.2e-09  Score=103.24  Aligned_cols=136  Identities=14%  Similarity=0.141  Sum_probs=90.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..+..+++.+..|+++||+|||+.++.+.+...+..+.+.+.++.+......+..........+....+.+|.+|++.
T Consensus        50 s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  129 (395)
T PRK10054         50 TIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS  129 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH
Confidence            33455677888999999999999998887776665544444443333222222222211212223445677899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      |+++.|+.+....+|+.++|.+.+.+.+ .+...++.+.+++.+++.+...+..||+
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998887664 3445566666666666655555544554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=7.9e-10  Score=103.94  Aligned_cols=140  Identities=15%  Similarity=0.131  Sum_probs=98.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..+...++.++.|++.||+|||+.+..+.+...+.........+.+......+...++.....+....+.+|.+|++
T Consensus        35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  114 (399)
T TIGR00893        35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS  114 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH
Confidence            34456677888999999999999999888877666555544444333333333333333333344456678899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|+++.++......+|..++|.+.+.+.+..+....+.+.+++.++..+..++..||++.
T Consensus       115 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       115 ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            999999999999999999999888877666555556666666666666666665666543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.14  E-value=2.4e-10  Score=111.29  Aligned_cols=113  Identities=14%  Similarity=-0.023  Sum_probs=85.0

Q ss_pred             cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHH-HHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHhh
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-LSAFWTAGTIFEASLAWVVMT-RLNWRWLLAFSS   88 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~l~~~~~~-~~~WR~~f~~~~   88 (388)
                      .+++...++++|++.|++.+.. .....++.|.+|++.||+..+. ++.+...| .+++.+...+.+ ..+|+.++++..
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~  416 (490)
T PRK10642        338 NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLM  416 (490)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHH
Confidence            3456778889999999876654 4455677899999999998875 55555444 455555544443 346888887777


Q ss_pred             HHHHHHHHHHhcCCCCchHHHhc-----cChHHHHHHHHHHH
Q 016515           89 VPSFALLLFYGLAPESPRYLCAK-----ARTVDAHRILEKMA  125 (388)
Q Consensus        89 i~~l~~~~~~~~~pESp~~l~~~-----~~~~~a~~~l~~~~  125 (388)
                      +++++..+..+++||||+|+.+|     ||.|||.++++|++
T Consensus       417 ~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        417 VVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            78777766677789999999865     99999999998875

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.14  E-value=1.4e-09  Score=103.52  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=96.0

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      +..++..++.+..|.++||+|||++++.+.++.++..+.....++........+....+.....+..+.+..|.+|++.|
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34556677888999999999999999888777666555544444333333332332222212223456778999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      +++.++.+....++..++|.+.+.+.+..+....+++.+++.+++.+..++..||++.
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999888776665555566777777777776655555688753

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.13  E-value=1.9e-09  Score=102.34  Aligned_cols=140  Identities=18%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|.+.||+|||+.++.+....++..+......+.+......+..........+..+.+..|.+|++
T Consensus        54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~  133 (406)
T PRK15402         54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA  133 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh
Confidence            34455667788899999999999999988877666665554444333322222222222222222345567788999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|.++.++......++..++|.+.+.+.+..+....+++.+++.+++.+..++..||+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        134 DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            999999999888888888999888777665555556666777777666666666677753

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.13  E-value=1.7e-09  Score=102.22  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|+++||+|||+.++.+.....+.........+........+....+.....+..+.+.+|.+|++
T Consensus        44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~  123 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR  123 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH
Confidence            33445566778899999999999999988877666555444443333222222222222222223345677889999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      .|+++.++.+....+++.++|.+.+.+.+..+....+.+.+++.++..++..+..||++.+
T Consensus       124 ~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        124 RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999998877665555544556667766666666666666776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.13  E-value=3.6e-09  Score=100.09  Aligned_cols=137  Identities=11%  Similarity=0.045  Sum_probs=96.0

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ...+...++.++.+.+.||+|||+.++.+..+.++..+......+.+......+...++.....+....+.+|.+|++.|
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~  142 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence            44566677889999999999999999888877766555444433333333333333333333345566788999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +++.++......++..++|.+.+.+.+..+....+++.+++++++.+......||++
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999888777655555666666666555555544457754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.12  E-value=1.5e-08  Score=92.64  Aligned_cols=149  Identities=19%  Similarity=0.202  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecc
Q 016515          231 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      .+..+..+..++.+++|+++.+++-||+|-|+++..+.++..+..+.............+-.....+..+..+..-.|.+
T Consensus       288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~  367 (438)
T COG2270         288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLA  367 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            34455667778889999999999999999999888877765554444333222211111111122333455566778999


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  379 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l  379 (388)
                      ++.|++.-+...|+.+..++..++++|++...+.+.++..-......++.+...+.++...|+.++++.
T Consensus       368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~~  436 (438)
T COG2270         368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRREA  436 (438)
T ss_pred             HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCccc
Confidence            999999999999999999999999999999888777665433333333333344445555566544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.10  E-value=3.9e-09  Score=100.87  Aligned_cols=119  Identities=20%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.++.|++.||+|||+.++.+....++.........+.+...+..+...++....++....+..|.+|++
T Consensus        59 ~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~  138 (426)
T PRK12307         59 ATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH  138 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh
Confidence            34456677888999999999999999998888776665554444333333333333333333344456677889999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHH
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL  355 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i  355 (388)
                      .|+++.++......+|..++|.+.+.+.+..+....+++
T Consensus       139 ~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        139 LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            999999999988889999998887776665544444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.10  E-value=4e-09  Score=101.11  Aligned_cols=138  Identities=13%  Similarity=0.109  Sum_probs=94.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|++.||+|||+.+..+.+..++..+......+.+......+...++....++....+.+|.+|++
T Consensus        64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~  143 (434)
T PRK11663         64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT  143 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH
Confidence            34456677888999999999999999998888777666655544333322222222222222233455567889999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+++.++..+...+..||+
T Consensus       144 ~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        144 ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999998888877765555566666655554444444444554

>PRK10504 putative transporter; Provisional

Probab=99.09  E-value=4.6e-09  Score=101.80  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=92.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ...++..++.++.|++.||+|||+.++.+..+.++..+......+........+...++.....+....+..|.+|++.|
T Consensus        53 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  132 (471)
T PRK10504         53 SYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQY  132 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHH
Confidence            33455677889999999999999988877665555444333333322222222332233333345566778999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +++.|+.+....++..++|.+.+.+.+..+....+.+...+..++.+......|+.+
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999888777655455566555555566555555555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.08  E-value=5.4e-09  Score=101.97  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....++..++.++.|++.||+|||+.++.+.++.++..+......+.+......+...++..+..+....+..|.+|.+.
T Consensus        62 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  141 (496)
T PRK03893         62 SAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL  141 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            34456678889999999999999999888877666655554444333333333333333333444556678899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHH
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI  354 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~  354 (388)
                      |+++.++.+....+|+.++|.+.+.+.+..+....+.
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~  178 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF  178 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            9999999999999999999998887776554444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.08  E-value=2.3e-09  Score=104.24  Aligned_cols=139  Identities=10%  Similarity=0.077  Sum_probs=98.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|++.||+|||+.++.+..+..+..+......+........+...++.....+....+..|.+|++
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~  122 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE  122 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH
Confidence            34456677888999999999999999998887766665554444333333223333333333334456678899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++......+|..++|.+.+.+.+..+....+++.+.+.+++.++..+..||++
T Consensus       123 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       123 KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999998888777655555566666666666666666666654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.07  E-value=6.7e-09  Score=100.10  Aligned_cols=139  Identities=16%  Similarity=0.045  Sum_probs=84.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc----hhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ----SAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      .....+...++.++.|++.||+|||++++.+..+.++..+......    +........+...++....++.......|.
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            3445666788899999999999999998888776666555443321    222222222222222222333344567899


Q ss_pred             cccchhhHHHHHHHHHHhHhHh-HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          313 YPTSARTTGFGVASSLGKVGGM-VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~-~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +|++.|+++.|+.+....+|+. .+|.+...+....+....+++.+++.++..++..++.||+.
T Consensus       149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            9999999999998888888764 45543322222223344556555655555555555556653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.06  E-value=6.4e-09  Score=99.77  Aligned_cols=127  Identities=16%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          239 IASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .......++.+++|+++||+ |||+.++.+....++..+.+.... ..............+.....+....+.+|+||++
T Consensus        53 ~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~  132 (493)
T PRK15462         53 AYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT  132 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence            33455677889999999999 999998887766555433333221 1111111111111111112234457889999986


Q ss_pred             --hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 016515          317 --ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       317 --~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                        .|.++.++.+..+++|+.++|.+.+++.+..+....+.+.++..+++.+
T Consensus       133 ~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li  183 (493)
T PRK15462        133 DPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV  183 (493)
T ss_pred             CccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence              7999999999999999999999999887665555556554443344433

>PRK03699 putative transporter; Provisional

Probab=99.06  E-value=1.5e-08  Score=95.85  Aligned_cols=130  Identities=17%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....++..++.++.|++.||+|||+.+..+..+..+..+......+.+...+..+....+.....+....+.+|.+|++.
T Consensus        49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~  128 (394)
T PRK03699         49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ  128 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch
Confidence            34456678889999999999999999888776665555444443333322233333333333334556678899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHh
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASS  367 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~  367 (388)
                      |+++.++.+....+++.++|.+.+.+.+. .+....+.+.+++.++..+..
T Consensus       129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888999887766543 344445555555555444333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=1.2e-08  Score=99.71  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch------hHHHHHHHHHHHHhhhcccceeeeecc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS------AVVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      .....++.+++.++.+++.||+|||+.+..+.++..+..+......+      ........+...++..+.++....+.+
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  141 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS  141 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            44456677899999999999999999988776665554443333211      122223333334444455567789999


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHH
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVG  342 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~  342 (388)
                      |.+|++.|+++.++.+....+|..+++.+...
T Consensus       142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887       142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888766543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.05  E-value=6.9e-09  Score=96.61  Aligned_cols=133  Identities=13%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-----SAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+..+...++.++.|++.||+|||+.++.+..+..+.........     +.+......+....+.....+....+.+|
T Consensus        40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  119 (365)
T TIGR00900        40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD  119 (365)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444566778889999999999999999887766544433332211     22222222222223323333456788999


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  369 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  369 (388)
                      .+|++.|+++.++.+....+|..++|.+.+.+.+..+....+++.++..+++.+....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       120 LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998887766555445555555555555444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.04  E-value=2.4e-09  Score=100.60  Aligned_cols=138  Identities=13%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..++..++.++.|.+.||+|||+.+..+..+.++.........+.+......+...++.....+....+.+|.+|++.
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  112 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE  112 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34456677889999999999999999988877766655554443333332233333333333333455678899999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |+++.++.+....+++.++|.+.+.+.+..+....+.+.+++.++..+...+..||++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9999999999999999999988887776555455666666666666666655567764

>PRK03545 putative arabinose transporter; Provisional

Probab=99.03  E-value=9.7e-09  Score=97.01  Aligned_cols=136  Identities=7%  Similarity=-0.005  Sum_probs=92.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ...+...++.+..|.+.||+|||+++..+.....+..+......+.+...+..+..........+....+.+|.+|++.|
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            33445567778889999999999999888776666555444434433322322222222222234456788999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +++.|+......++..++|.+.+.+.+..+....+++.++++++..+......||.
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998887766655555667777776666655555545554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.03  E-value=1.4e-09  Score=101.67  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.++.|+++||+|||+.++.+.++.++..+......+.+...+..+...++.....+....+.+|.+|++
T Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  115 (379)
T TIGR00881        36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS  115 (379)
T ss_pred             HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence            34456677888999999999999999998887776665555444333333333333333333334456678899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHH-HHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPL-VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++.+....+|+.++|. +...+.+..+....+++.+++.++..+..++..||++
T Consensus       116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999999999999999999984 4444444444445566566556555555555555543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=1.9e-08  Score=98.08  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccc-ccchh
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY-PTSAR  318 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~-p~~~R  318 (388)
                      ..++...+.+..|+++||+|||+.++.+..+..+..+.....++.+...........+..+..+.......+.+ |++.|
T Consensus        50 ~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r  129 (495)
T PRK14995         50 YSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQR  129 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34555667788999999999999999888776665544444333333333222222222223333344455555 78999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      +++.|+......+|..++|.+.+.+.+..+..+.+++...+.+++.++..++.||.++
T Consensus       130 ~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        130 NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999988877665666766666666666666666676543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.00  E-value=2.2e-08  Score=95.07  Aligned_cols=136  Identities=19%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..+...++.++.|++.||+|||+.++.+....++..+......+.+......+...++ .+..+....+..|.+|++.
T Consensus        61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~  139 (408)
T PRK09874         61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNK  139 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhh
Confidence            344556677888899999999999998877666555444433333322222222222222 2233444556788999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      |+++.++.+....+|..++|.+.+.+.+..+....+++.+++.+++.+...+..||.
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999988999999999888776655555566767776666666666655654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.00  E-value=1.1e-08  Score=96.30  Aligned_cols=139  Identities=13%  Similarity=0.073  Sum_probs=95.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.+..|++.||+|||+++..+..+.++..+.....++.+......+...++.....+....+..|.+|++
T Consensus        44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  123 (382)
T PRK10091         44 ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG  123 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence            34456677889999999999999999998887777665555444444333333333322222222334456788999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++......++..++|.+.+.+.+..+....+.+.++..++..+..++..||.+
T Consensus       124 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        124 KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999888888999898888777666555555666666666655555555567754

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.99  E-value=2.1e-08  Score=94.89  Aligned_cols=140  Identities=14%  Similarity=0.024  Sum_probs=90.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....+...++.++.|.++||+|||+.++.+.....+..+......+.+......+...++.....+....+..|.+|.+
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  128 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT  128 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence            34455667888999999999999999988877666555444443333222222222222221122234456778899999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|+.+.++.+....++..++|.+.+.+.+..+....+.+.++..++..+...+..||++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        129 QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999998888888888899888776665554555665555555554445555677643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.99  E-value=3.7e-07  Score=81.90  Aligned_cols=262  Identities=17%  Similarity=0.145  Sum_probs=152.2

Q ss_pred             cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHhhHHHH
Q 016515           15 NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL-NWRWLLAFSSVPSF   92 (388)
Q Consensus        15 ~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~-~WR~~f~~~~i~~l   92 (388)
                      +.+.|+.+-.+.|.|.+.. ....+.+-|.+|+| -+.+++.+.....+|..+++.+...+.++. +||....+=++|++
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~al  176 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLAL  176 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHH
Confidence            6778999999999998864 45567888999975 577889999999999988888877776655 79999888899988


Q ss_pred             HHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccc
Q 016515           93 ALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGF  172 (388)
Q Consensus        93 ~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
                      +.++.|+  |...|     ++.                  +..      +.+ .                          
T Consensus       177 lAl~~Wl--Pq~~r-----~~~------------------~~~------~~~-~--------------------------  198 (395)
T COG2807         177 LALLIWL--PQALR-----EQA------------------ASI------ATK-L--------------------------  198 (395)
T ss_pred             HHHHHHh--hhccc-----ccc------------------ccc------ccc-c--------------------------
Confidence            8877764  32211     000                  000      000 0                          


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHH
Q 016515          173 SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSA  252 (388)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (388)
                      .+...+++.+.   .+.+.+.+-.+++.||...-|.+.+..+..          .+.+. ......+..+.+++.++..-
T Consensus       199 ~~~~~vw~~~~---aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G----------~sa~~-aG~llsl~~l~~~~~~ll~P  264 (395)
T COG2807         199 VSVRKVWRSPL---AWQVTLFMGLQSLLYYIVIGWLPAILIDRG----------LSAAE-AGSLLSLMQLAQLPTALLIP  264 (395)
T ss_pred             ccccccccCch---hHHHHHHHHhhHHHHHHHHHHHHHHHHHcC----------CCHHH-hhhHHHHHHHHHHHHHHHHH
Confidence            00000222221   111222223466777776666655532211          11111 11123345677889999999


Q ss_pred             HHHHHhc-hhHHHHHHHHHHH--HHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeee-cccccccchhhHHHHHHHHH
Q 016515          253 IIVDKIG-RKLSMVLMFVSAC--IFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIY-APEIYPTSARTTGFGVASSL  328 (388)
Q Consensus       253 ~l~d~~g-Rr~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~El~p~~~R~~~~~~~~~~  328 (388)
                      .+.+|.. +|+..+....+..  .+.+.+...+..++. .+  .......+.+++.-.. .-..-.++..+.-.|+...+
T Consensus       265 ~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~--llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~  341 (395)
T COG2807         265 LLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL--LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGV  341 (395)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH--HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence            9999865 4444433332222  222222222222222 11  1222223344443333 33334556667778999999


Q ss_pred             HhHhHhHHHHHHHHhhcccchhHH
Q 016515          329 GKVGGMVCPLVAVGLVTSCHLRLA  352 (388)
Q Consensus       329 ~~i~~~~~p~~~~~~~~~~~~~~~  352 (388)
                      |.+-+.++|++.+++.|.++.+..
T Consensus       342 GYllAa~GP~l~G~lhDa~gsw~~  365 (395)
T COG2807         342 GYLLAAFGPWLFGFLHDATGSWSA  365 (395)
T ss_pred             hHHHHhhhhhhHhHHHHhcCChHH
Confidence            999999999999999998775543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.98  E-value=2.6e-08  Score=94.42  Aligned_cols=133  Identities=16%  Similarity=0.078  Sum_probs=88.5

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      .+......++.|.++||+|||+.++.+.....+..+.....++.+......+..........+....+..|.+|++.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            44445567889999999999999988887776665555444333322222222222211222344567899999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +.|+.+....+|..++|.+.+.+. ..+....+++.+...+++.+...+..||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999888776 43444556655555555554444445553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.97  E-value=1.3e-08  Score=97.69  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ..+..++..++.+..|++.||+|||+.++.+.++.++..+.....    .+........+...++....++.......|.
T Consensus        67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~  146 (438)
T TIGR00712        67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW  146 (438)
T ss_pred             HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence            445566778899999999999999998887766655544443321    1111111122222222222334445677899


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +|++.|+++.|+.+....+++.++|.+.....+. .+....+++.++++++..+..+++.||++
T Consensus       147 ~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       147 WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999999999999999998888766544432 33345566667776666666666666653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.96  E-value=1.1e-08  Score=100.56  Aligned_cols=136  Identities=19%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..+|+++.|.++||+|||++++.+.++..++.+...+..+.....++-+...++..+.....+.+.+|+++++
T Consensus       124 ~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~  203 (521)
T KOG0255|consen  124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK  203 (521)
T ss_pred             HHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence            44556777899999999999999999999999998888877777777666677777777777788888999999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|+.+..+ ..+.+.++..+|....++..  +....+++..+..++..+. ++++||.++
T Consensus       204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  204 QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR  259 (521)
T ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence            99999999 88888888888887777665  2233344444444444333 666678653

>PRK11043 putative transporter; Provisional

Probab=98.96  E-value=3e-08  Score=93.99  Aligned_cols=138  Identities=17%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.++.|+++||+|||+.++.+.....+..+......+.+......+....+..........+..|.+|++
T Consensus        47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (401)
T PRK11043         47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ  126 (401)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence            34445667889999999999999999998877666555544444333222222222221221112223345778999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .|+...+..+....+++.++|.+.+.+.+..+....+.+..++.++..+..++.+|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        127 KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999988888899999999888877766655566666666666665555554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.95  E-value=2.3e-08  Score=93.41  Aligned_cols=107  Identities=22%  Similarity=0.301  Sum_probs=72.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ..+..++..++.++.|++.||+|||+.++.+.++..+..+...... +.+......+..... .+.+.....+.+|.+|+
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~  121 (366)
T TIGR00886        43 VAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPK  121 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCH
Confidence            3445667788999999999999999999888777666555544433 322222222222222 23334455678999999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      +.|+++.++......+|..+++.+.+.+.
T Consensus       122 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886       122 KIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999998887777777766655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.95  E-value=1.8e-08  Score=94.20  Aligned_cols=136  Identities=13%  Similarity=-0.047  Sum_probs=88.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ...++..++.+..|++.||+|||++++.................+........+..... .+.........+|.+|++.|
T Consensus        34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERR  112 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHH
Confidence            34556678889999999999999876654433323222112112222222222222222 12223344556899999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +++.++......+|+.++|.+.+.+.+..+....+++.+++.++..+..++..||.+
T Consensus       113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999988887776655555666667777776666776778754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=98.95  E-value=1.3e-08  Score=99.67  Aligned_cols=135  Identities=20%  Similarity=0.168  Sum_probs=94.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.++.|++.||+|||+.++.+.++.++..+...+..+.+...+..+...++..+..+....+.+|.+|++
T Consensus       133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~  212 (505)
T TIGR00898       133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK  212 (505)
T ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChh
Confidence            44556677899999999999999999998887777666655554444333334444444444445667788999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+.+.++......+|.+++|.+...+.+   ....+++.++..++..+.. ++.||+.
T Consensus       213 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       213 QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence            99999999877777888888876654322   2344555666666655555 4567753

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.7e-08  Score=87.13  Aligned_cols=124  Identities=13%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-hhh-chhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHH
Q 016515          244 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  321 (388)
Q Consensus       244 ~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~  321 (388)
                      ..+.+.+.|.++||.||+..++.+..+..+..=.. .+. -+.+..+.++   ...........|-..+-+.|.+.-+||
T Consensus       313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~l---GLsysllAcslWP~va~~vpE~qLGTa  389 (459)
T KOG4686|consen  313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFL---GLSYSLLACSLWPCVASLVPEEQLGTA  389 (459)
T ss_pred             hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHH---hhhHHHHHHHHhhhhhhhCCHHHhcch
Confidence            45566778999999999988876655443321111 111 1122222211   111111112345566777888999999


Q ss_pred             HHHHHHHHhHhHhHHHHHHHHhhcccchh----HHHHHHHHHHHHHHHHhhcc
Q 016515          322 FGVASSLGKVGGMVCPLVAVGLVTSCHLR----LAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       322 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~  370 (388)
                      .|++.++.++|=.+.|.+++.+.+.-+.+    ..+++++.+++.+..+.+.+
T Consensus       390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            99999999999999999998877654322    23444555556665554444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.93  E-value=6.9e-09  Score=100.41  Aligned_cols=135  Identities=11%  Similarity=0.057  Sum_probs=93.7

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ..++..++.+.+|++.||+|||+.+..+.++.++..+....  ..+.....+..+...++....++....+.+|.+|++.
T Consensus        85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~  164 (465)
T TIGR00894        85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE  164 (465)
T ss_pred             HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence            34567888899999999999999988877766555443322  1222222222233333333445566788999999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      |+++.|+.+....+|..++|.+.+.+.+.. +...++.+.++..++..++.++.++|.
T Consensus       165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999888877652 555567777776666655555555553

>PRK09848 glucuronide transporter; Provisional

Probab=98.92  E-value=6.5e-07  Score=86.25  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             hhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeeeccccccc----
Q 016515          242 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT----  315 (388)
Q Consensus       242 ~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~----  315 (388)
                      +..+++..+.+++.||+|+|+.+..+..+..+..+.+....  +.+......+....+.....+..+.+.+|..|.    
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            44567788899999999999988877765544333333321  222211112222222223334556677777664    


Q ss_pred             ---chhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          316 ---SARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       316 ---~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                         +.++...|+.+....+|..+++.+.+.+.+
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               456888999888889999998887766543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.90  E-value=6.1e-08  Score=93.85  Aligned_cols=128  Identities=16%  Similarity=0.057  Sum_probs=85.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          238 FIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ....+...++.+++|++.|| +|||++++.+..+.++..+.+....+.............+.....+....+.+|.+|++
T Consensus        55 ~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~  134 (475)
T TIGR00924        55 GAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERG  134 (475)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence            34455678899999999999 89999998888776665554444332222222222222222223345567888999875


Q ss_pred             h---hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 016515          317 A---RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       317 ~---R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~  365 (388)
                      .   |+++.++.+...++|+.++|.+.+++.+..+....+.+.++..+++.+
T Consensus       135 ~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       135 DMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             CcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            4   899999999999999999999998877655545555555544444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.89  E-value=2e-08  Score=96.98  Aligned_cols=138  Identities=19%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchh--HHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSA--VVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      ..+..++..++.++.|++.||+|||+.++.+.++..+..+.... ....  +......+...++.....+....+.+|.+
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  156 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA  156 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence            44556677889999999999999999988777665554443322 1111  12222223333333334456678899999


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHH---HHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVA---VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |++.|+++.++.+....+|..++|.+.   ....+..+....+.+.....++.. +..++.||+.
T Consensus       157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~  220 (481)
T TIGR00879       157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESP  220 (481)
T ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence            999999999999999999999999877   332233333444555444444443 3344457764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.2e-06  Score=82.49  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ........+.+.++...+.+|+|||+++.++..+..+....+.+..  ..+..++..+..........+++|.+.+|..+
T Consensus       278 ~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD  357 (467)
T COG2211         278 LLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD  357 (467)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence            3344445566688889999999999999988777666555554432  23333333344445555667788998888754


Q ss_pred             -----cchh--hHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          315 -----TSAR--TTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       315 -----~~~R--~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                           +..|  |...|....+..+|..++..+.+.++.
T Consensus       358 yge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         358 YGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3344  444666677777777777666655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.89  E-value=2.6e-07  Score=87.94  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=90.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-----QSAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+..+.+.+..+..|++.||+|.|+++..+....++..+...+.     .+.....++.+...+. .+.++......++
T Consensus        76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~  154 (462)
T PRK15034         76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISF  154 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence            344555666677778999999999998888777766555544432     2222222222222222 3344556677899


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHHhh-----ccc-------------chhHHHHHHHHHHHHHHHHhhccccc
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV-----TSC-------------HLRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~-----~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      .||++.|+++.|+....+++|..+++.+.+.+.     ...             +.....+++....++..++.++..++
T Consensus       155 wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        155 FFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999998888888776665554422     111             12234456777777777666666554


Q ss_pred             cc--CcchhhhH
Q 016515          374 TM--GRELKDTV  383 (388)
Q Consensus       374 t~--~~~l~~~~  383 (388)
                      .+  +++++|..
T Consensus       235 ~~~~~~~~~~~~  246 (462)
T PRK15034        235 IASSRASIADQL  246 (462)
T ss_pred             ccccccCHHHHH
Confidence            33  23444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.87  E-value=5.5e-08  Score=89.86  Aligned_cols=131  Identities=21%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....+...++.++.|++.||+|||+.+..+.....+..+.....++.+......+....+.....+....+.+|.+|++
T Consensus        40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  119 (352)
T cd06174          40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK  119 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence            44456667888999999999999999888887776665555444333332222222222332333455667899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHh
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  367 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  367 (388)
                      .|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+..
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877765544445555555555544443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.87  E-value=7.9e-08  Score=90.89  Aligned_cols=133  Identities=12%  Similarity=0.019  Sum_probs=86.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....+...+...+.|.+.||+|||++++.+..+.++..+......+.   ....+....+.....+....+.+|++|++.
T Consensus        45 ~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~  121 (393)
T PRK11195         45 MFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK  121 (393)
T ss_pred             HHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            34455667788899999999999999988877665443332222221   122222233333445667789999999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |+++.|+......++..++|.+.+.+.+.. ...++.+...+.+++. +..+..||.+
T Consensus       122 ~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        122 LVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            999999999999999999999988877643 2233333333333333 3344556643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=8.1e-08  Score=91.57  Aligned_cols=137  Identities=14%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h--hchhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F--HQSAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      .....+...++.++.|.++||+|||+.++.+....++....+.   +  ..+.+......+...++.....+....+.+|
T Consensus        58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  137 (417)
T PRK10489         58 VTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA  137 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3444566788889999999999999988766554443322221   1  1122222222222222222222344567899


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .+|++.|+++.++.+....+|..++|.+.+.+.+..+..+.+.+.++..+++.+.... .||+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~  199 (417)
T PRK10489        138 LVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPAL  199 (417)
T ss_pred             ccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            9999999999999999899999999998887766544445555555555555444444 4554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.83  E-value=5.4e-08  Score=90.96  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=84.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.+..|.+.||+|||+.++.+.++.++..+......+.+..........++....++.......|.+| +
T Consensus        44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~  122 (377)
T TIGR00890        44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D  122 (377)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence            445566778889999999999999999988777666655444443333322222222222222222333445677777 4


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      .|+++.++......+|..+++.+...+.+..+....+.+.++..++..+..+++.+|
T Consensus       123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            699999999888888887765555555554444455666666666665555554433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.83  E-value=1.9e-07  Score=89.49  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHH--------HHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          245 LPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV--------TTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       245 ~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .++.++.|++.||+|||+.++.+.....+......+..+...        ..+..+...++.....+....+.+|.+|++
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  149 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG  149 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence            567889999999999999998888766655554444322211        111122222222223344567899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHH
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVG  342 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~  342 (388)
                      .|+++.++.....+++..+++.+...
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877777666655443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.83  E-value=7.7e-09  Score=92.82  Aligned_cols=104  Identities=14%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      ++.+++++...|.++||+|||++++++.+..++..+......+-...+..-+... ...+-.++.-++.+|+++.+.|+.
T Consensus        78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~G-i~kgnl~v~rAiisdV~sek~r~l  156 (451)
T KOG2615|consen   78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGG-IFKGNLSVIRAIISDVVSEKYRPL  156 (451)
T ss_pred             HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCchHHHHHHHHhhcChhhccc
Confidence            5678889999999999999999999988887775555444333211111123332 224555678899999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      +++.......+|-+++|.+.+++..
T Consensus       157 ~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  157 GMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999887765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.82  E-value=6.8e-08  Score=93.81  Aligned_cols=138  Identities=18%  Similarity=0.097  Sum_probs=87.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh---------chhH---HHHHHHHHHHHhhhcccce
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---------QSAV---VTTVLLFGVRMCVTGTITV  304 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~  304 (388)
                      .....++..++.++.|++.||+|||++++.+..+..+..+.....         .+..   ...+.-+...++..+..+.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            344566778899999999999999999988776654443332221         1111   1112223333444445566


Q ss_pred             eeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          305 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       305 ~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      ...+.+|.+|++.|+++.++......+|..+++.+...+.        +..+....+++.++..++..+. .++.||+.
T Consensus       141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            7788999999999999999998888888888776544332        1223334555555555555443 44567875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.82  E-value=1.4e-07  Score=91.54  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhcccceeeeecccccccch--hh
Q 016515          244 ELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA--RT  319 (388)
Q Consensus       244 ~~~~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~--R~  319 (388)
                      .....+++|++.|| +|||++++.+..+..+..+......+ .............+.....+....+.+|.||++.  |.
T Consensus        63 ~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~  142 (489)
T PRK10207         63 VYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD  142 (489)
T ss_pred             HHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh
Confidence            34455689999999 99999999888776665444443322 1111111222222222233455678999999884  57


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHH
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF  356 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~  356 (388)
                      .+.++.+...++|+.++|.+.+++.+..+....|++.
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~  179 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC  179 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            7899999999999999999888887766544455443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.81  E-value=5.6e-08  Score=88.80  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=104.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      .....++.+-++=.+.|.++||.+.|+.+..+++.++++.+.+.+..+-....++.+...++-...++.+.-..+..||+
T Consensus        69 i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          69 LGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            34445666778888999999999999999999999999998888765443333444444455445567788889999999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHH--HHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVA--VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +-||+..++=|...++||.+.|.+.  ..+....+....+++=++++++-+++.++..+||
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999998887  6655555555566666677776667777665443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.79  E-value=4.3e-07  Score=87.07  Aligned_cols=136  Identities=21%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHHHhhhcccceeeeecc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA--------VVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      ...++..+|.++.|++.||+|||+.+..+....++..+...+..+.        .....+-+...++..+.++....+.+
T Consensus        71 ~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  150 (432)
T PRK10406         71 AGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS  150 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Confidence            3344556899999999999999999988887776655554432211        11222223333343445566778999


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |.+|++.|+++.++.......|..+++.+...+.        +..+...++++.++..++. ++.....||++
T Consensus       151 e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        151 EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            9999999999988876655566666654433221        1223334454444444443 33334456764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.78  E-value=2.4e-07  Score=87.69  Aligned_cols=123  Identities=11%  Similarity=-0.037  Sum_probs=76.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---hhch-----hHHHHHHHHHHHHhhhcccceeeee
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQS-----AVVTTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      .....+...++.++.|+++||+|||++++.+.+..++..+...   ...+     .....+..+....+.....+....+
T Consensus        57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  136 (399)
T PRK05122         57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILW  136 (399)
T ss_pred             HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHH
Confidence            3444566678888999999999999999888765544322221   1111     1111112222222222223344556


Q ss_pred             cccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHH
Q 016515          309 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV  359 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~  359 (388)
                      ..|.+|.+.|+++.++......+|..++|.+.+.+.+..+....+++..++
T Consensus       137 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        137 GIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             HHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            789999999999999988877888888888877776655544333333333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.78  E-value=6e-08  Score=93.91  Aligned_cols=133  Identities=14%  Similarity=0.016  Sum_probs=83.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-----hchhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      ...++..++.+..|++.||+|||+++..+.+..++....+..     ..+......+.+...++....++....+.+|.+
T Consensus        72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (467)
T PRK09556         72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT  151 (467)
T ss_pred             HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence            345566788899999999999999988777665554443322     122222222223333333334455667899999


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHhhccc
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      |++.|+++.|+....+.+|+.+++.+...+....   +....+.+.+++.++.++..+++.
T Consensus       152 ~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~  212 (467)
T PRK09556        152 PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYG  212 (467)
T ss_pred             CccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988899988887765444321   122334444555544444444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.78  E-value=2.8e-06  Score=79.15  Aligned_cols=138  Identities=13%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      +..+.+++...++.++.+|+|.|+.++++..+..+=++......+.+.....-..-..-.........-|.++.+|++..
T Consensus       267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls  346 (412)
T PF01306_consen  267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS  346 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence            44556788899999999999999998887776665444444433333221111110000001112345588999999999


Q ss_pred             hHHHHHHHHH-HhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          319 TTGFGVASSL-GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       319 ~~~~~~~~~~-~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      +|...+...+ ..++..+.+.+.+.+.|..+....+++.+.+.+...++..+.+++.+.
T Consensus       347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            9999998655 468888888889999998876678888888888888888877765544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.76  E-value=2.6e-07  Score=89.82  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h-h-chhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ..+-.++-++.+|.++||+.||++++.+-+..++....+.   . . .+.+....+.+....+.....+...++.+|+.|
T Consensus        54 ~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~  133 (524)
T PF05977_consen   54 STLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP  133 (524)
T ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444556778899999999999999887765544322221   1 1 122333333333333333333556688999999


Q ss_pred             cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          315 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       315 ~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .+.-..++++.....++...++|.+.+.+....+....+.+-+++.+++.+......++.
T Consensus       134 ~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  134 KEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            999999999999999999999999998887766666667666666666555555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00897 2A0118 polyol permease family

Probab=98.76  E-value=2.1e-07  Score=88.26  Aligned_cols=112  Identities=7%  Similarity=0.014  Sum_probs=71.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---hhchhHHH-HHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVT-TVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      .....++..++.++.|.+.||+|||+.+..+..+.++..+...   ....+... ....+....+.....+....+..|.
T Consensus        54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~  133 (402)
T TIGR00897        54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN  133 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence            4455677788999999999999999998887766555433221   11122221 1122221111111222233456788


Q ss_pred             cccchhhHHHHHHHHHHhHhH-hHHHHHHHHhhcccc
Q 016515          313 YPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCH  348 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~-~~~p~~~~~~~~~~~  348 (388)
                      +|++.|+++.|+.+....+|. .++|.+.+.+.+..+
T Consensus       134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999988886 577877766665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.75  E-value=7.9e-08  Score=76.12  Aligned_cols=101  Identities=25%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             hhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 016515            4 SVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW   82 (388)
Q Consensus         4 ~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~   82 (388)
                      .++.++..++++++.+.+.+++.|++.+.. +....++.|..|+++|++..+..+....+|..+++.+...+.+..+||+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  118 (141)
T TIGR00880        39 VLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA  118 (141)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHH
Confidence            344555667789999999999999998865 5667889999999999999999999999999999999888888889999


Q ss_pred             HHHHhhHHHHHHH-HHHhcCCCC
Q 016515           83 LLAFSSVPSFALL-LFYGLAPES  104 (388)
Q Consensus        83 ~f~~~~i~~l~~~-~~~~~~pES  104 (388)
                      .+++.++..++.. ...+..||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       119 PFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCC
Confidence            9988877766554 344555664

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.74  E-value=4.7e-07  Score=83.47  Aligned_cols=136  Identities=13%  Similarity=0.047  Sum_probs=103.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..++.++..++..+...+.||+.||++++..+.+..+.-+......+....+..-++..+.-...+++...+.+++.|++
T Consensus        54 is~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~  133 (394)
T COG2814          54 ITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG  133 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            44556677888999999999999999998777666555554444444444444445544444556678888999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  372 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p  372 (388)
                      .|+++.++...--.+..+++..+..++-+..++-.+|+..+.+++++.+..+..+|
T Consensus       134 ~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         134 KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999988777777777666666666667677888889999999888888888

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.74  E-value=8.3e-07  Score=81.28  Aligned_cols=138  Identities=20%  Similarity=0.199  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHH-Hhhhcccceeeeecc
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFGVR-MCVTGTITVATIYAP  310 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  310 (388)
                      .+...++.+.+.+.-+.-|++.||+|-|+....++....+-.+.+.+  ...+... .+.+... -...+.+++.-.+.+
T Consensus        52 ~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~-ll~~gll~G~~GasFav~m~~~s  130 (417)
T COG2223          52 GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ-LLVIGLLLGLAGASFAVGMPNAS  130 (417)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH-HHHHHHHHhcccceehccccccc
Confidence            34445555666666778899999999999888877776554444333  2222211 1122211 122345566778899


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHhhccccc
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH---LRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      +.||++.++++.|+.- .|++|..+..++.+.+....+   ......++....++..+..++...|
T Consensus       131 ~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         131 FFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             ccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999 999999998888887776655   4556677777777777777766433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.73  E-value=7.1e-07  Score=84.06  Aligned_cols=111  Identities=13%  Similarity=-0.035  Sum_probs=74.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ......++..++.++.|++.||+|||+.+..+.+...+........++.+...+..+....+.....+.......+..|+
T Consensus        46 ~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~  125 (381)
T PRK03633         46 VSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS  125 (381)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            34445667788899999999999999998887776665544444433333322322222222222223333445677888


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      +.|+++.+..+....+|..++|.+.+.+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        126 RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999888765543

>PRK09952 shikimate transporter; Provisional

Probab=98.70  E-value=2.7e-07  Score=88.56  Aligned_cols=103  Identities=17%  Similarity=0.030  Sum_probs=69.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhH--------HHHHHHHHHHHhhhcccceeeeeccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAV--------VTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+...+|.++.|++.||+|||+.++.+..+.++..+...+..+..        ....+.+...++..+.++....+.+|
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3445678889999999999999999988877776665555433211        11122233333333444555678999


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHH
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVG  342 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~  342 (388)
                      .+|++.|++..+.......+|..+++.+...
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~  183 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL  183 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888877767777776554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.70  E-value=3.8e-07  Score=87.97  Aligned_cols=130  Identities=12%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             hhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHhhhcccceeeeecccccccchhhH
Q 016515          242 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       242 ~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      +...++..+.|+++||+|||+.++.+.+...+..+......+.+...... +...++..........+..|.+| +.|++
T Consensus        65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~  143 (455)
T TIGR00892        65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL  143 (455)
T ss_pred             HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence            34466778899999999999998887766555444433332222211111 11111111112333456678886 78999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  372 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p  372 (388)
                      +.|+.+....+|+.++|.+.+.+.+..+...++++.+++.+++.+..++..|
T Consensus       144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999988887777666556777777766655554444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.69  E-value=6.5e-07  Score=87.29  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhcccceeeeecccccccch--hhHHH
Q 016515          247 GLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA--RTTGF  322 (388)
Q Consensus       247 ~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~--R~~~~  322 (388)
                      ..+++|++.|| +|||+.++.+.++.++....+....+ .............+.....+....+.+|.||++.  |..+.
T Consensus        73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~  152 (500)
T PRK09584         73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF  152 (500)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence            34678999999 59999998887766554444433222 1111111122222222233445578899998653  45678


Q ss_pred             HHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHH
Q 016515          323 GVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEV  358 (388)
Q Consensus       323 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~  358 (388)
                      ++.+...++|+.++|.+.+++.+..+....+.+.++
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i  188 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV  188 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            888899999999999999988776665555555443

>PRK12382 putative transporter; Provisional

Probab=98.67  E-value=5.7e-07  Score=85.01  Aligned_cols=112  Identities=12%  Similarity=-0.050  Sum_probs=70.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h-h----chhHHHHHHHHHHHHhhhcccceeeee
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-H----QSAVVTTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      .....+...++.+..|+++||+|||+.++.+.....+..+...   . .    .+.....+..+....+.....+....+
T Consensus        57 ~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  136 (392)
T PRK12382         57 VGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTW  136 (392)
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556677888999999999999998887665544322211   1 1    111111122222222222222334456


Q ss_pred             cccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc
Q 016515          309 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  348 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~  348 (388)
                      ..|.+|++.|+++.++......++..++|.+.+.+.+..+
T Consensus       137 ~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382        137 GLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7899999999999999887777888888888776655444

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.66  E-value=3.2e-07  Score=85.93  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVL-MFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ...+...+.....|.++||+|||+.++. +.....+..+......+.+......+....+.....+....+..|..|++.
T Consensus        41 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~  120 (375)
T TIGR00899        41 GSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG  120 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence            3344566677888999999999886554 333333333333333332222222222212222223334456778888877


Q ss_pred             hhHH--HHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          318 RTTG--FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       318 R~~~--~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      |+.+  .+.....+.+|..++|.+.+.+.+..+....+++.+.+.++..+..++..||.+
T Consensus       121 ~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       121 REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7755  567777778889999988887776655556677777777777666666566654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.62  E-value=5.7e-07  Score=85.08  Aligned_cols=124  Identities=8%  Similarity=-0.013  Sum_probs=82.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ....++...+.+..+++.||+|||++++.+..+.++..+...+.++........+...++.....+....+..|.+| +.
T Consensus        51 s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~  129 (393)
T PRK09705         51 ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR  129 (393)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence            34455667888999999999999999999988887776666554443332333333333333333445567788887 67


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhccc-chhHHHHHHHHHHHH
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVL  362 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~~~~~i~~~~~~~  362 (388)
                      |+++.|+.......|+.+++.+.+.+.+.. +....+.++++..++
T Consensus       130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        130 TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999998888888888888777665543 223334444444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=2.1e-06  Score=81.60  Aligned_cols=108  Identities=19%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      .....++..++++..+++.||+|||+.++.+..+.++....+..   ..+.+......+....+.....+....+..|+.
T Consensus        44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~  123 (410)
T TIGR00885        44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG  123 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence            44556677889999999999999999998887766554443322   112222222222222222223334456778889


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      |++.|++..++.+.+..+|+.++|.+...+.
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.61  E-value=7.5e-07  Score=83.72  Aligned_cols=101  Identities=22%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhH----H----HHHHHHHHHHhhhcccceeeeecccccc
Q 016515          243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAV----V----TTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ...++.++.|++.||+|||+.++.+.++..+..+......+..    .    .....+...++.....+....+.+|.+|
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  126 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP  126 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC
Confidence            3356888999999999999999888776665544443322211    0    1111122222222334456678999999


Q ss_pred             cchhhHHHHHHHHHHhHhHhHHHHHHHHh
Q 016515          315 TSARTTGFGVASSLGKVGGMVCPLVAVGL  343 (388)
Q Consensus       315 ~~~R~~~~~~~~~~~~i~~~~~p~~~~~~  343 (388)
                      ++.|++..++......+|..++|.+...+
T Consensus       127 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       127 PGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.1e-07  Score=86.00  Aligned_cols=139  Identities=19%  Similarity=0.139  Sum_probs=106.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch-
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA-  317 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~-  317 (388)
                      .-.+.+++.+.+.|.+.||+|+|..++++++......+.+.+.++.....+.-.....+..........+.++.||.+. 
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e  193 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE  193 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh
Confidence            3456678888899999999999999999998887777777776665433333333222222223344568899999887 


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      |++++|+.-.+..+|-.++|.+.+.+++..+...+|++.++++++...+.++..+.++.+
T Consensus       194 r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  194 RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            699999999999999999999999888888899999999999998888777766544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.60  E-value=1.6e-06  Score=93.28  Aligned_cols=135  Identities=10%  Similarity=-0.036  Sum_probs=83.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHH--HHHhh-hchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL--LPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      +..+..++.+.++|.++||+|||+++.....+...+.  ..+.+ ..+.+...++.++...+.....+....+.+|++|.
T Consensus        60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~  139 (1140)
T PRK06814         60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK  139 (1140)
T ss_pred             HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc
Confidence            3345567778889999999999997643222211111  11111 22333333333343334344556778899999999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +.|++++|+.+....+|..++|.+.+.+....+....+ +..+...+.++.+.+..|++
T Consensus       140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        140 DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999999887765544333 33333333333333344554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.59  E-value=1.8e-06  Score=93.11  Aligned_cols=108  Identities=12%  Similarity=0.008  Sum_probs=74.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      +..+..+++++++|+++||+|||++++.+.++..+..+...   ...+.+...+..++..++.....+....+.+|++|.
T Consensus        55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  134 (1146)
T PRK08633         55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK  134 (1146)
T ss_pred             HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence            34455677888999999999999999877655443332222   122222222233333333333445567899999999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      +.|+++.|+......+|..++|.+.+.+...
T Consensus       135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        135 ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888776654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.57  E-value=5.2e-08  Score=89.89  Aligned_cols=143  Identities=14%  Similarity=0.039  Sum_probs=101.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      .-.+...+++.++|++.||++||+++.++.++-.+..+...+.+..+..+++-.+...+-....++...+.+++||...|
T Consensus        76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R  155 (493)
T KOG1330|consen   76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR  155 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence            34556678889999999999999999999888877777666555545444444443333344557788999999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMGRELKD  381 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~  381 (388)
                      ++..++.|.+..+|+.++-.....+..... ..+.+..-+++.++.++++.++.+|..++.-||
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            999999999988887776433333222222 334566677788888888877777776543333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.55  E-value=1.3e-06  Score=85.71  Aligned_cols=138  Identities=22%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....++..++.++.|+++|++|||+.++.+.+...+-.+......+.......-+...++..+...+...|.+|+-|++
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~  174 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH  174 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence            44556778999999999999999999998887776666655555444433334344444444444456788999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|+.-.++......+|..++ ++.++.....  +.-..+.+..+.+++..+. .+..||+.+
T Consensus       175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            99999999988877666666 5555444332  2223445555666666666 555678653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.55  E-value=1.1e-06  Score=83.52  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+++++|++.++.+.||+|||..+..+.+...+..+.+...   +.......--+...............|..|+-|.+.
T Consensus        70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~  149 (485)
T KOG0569|consen   70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL  149 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh
Confidence            45678899999999999999988877666555444443321   111122222222222222233456789999999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHH-HHhhcccchhHHH--HHHHHHHHHHHHHhhcccccccC
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLAV--ILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~-~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      ||....+......+|..++..+. +.+..... .|++  ....+.+++. ++.+...||+.+
T Consensus       150 RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~-~W~~l~~~~~i~~~~~-l~~l~~~PESPk  209 (485)
T KOG0569|consen  150 RGALGTLLQIGVVIGILLGQVLGLPSLLGTED-LWPYLLAFPLIPALLQ-LALLPFLPESPK  209 (485)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCc-chHHHHHHHHHHHHHH-HHHHhcCCCCcc
Confidence            99999888888888887774433 33343322 2232  2223333444 344445688753

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.54  E-value=3.6e-06  Score=81.97  Aligned_cols=129  Identities=15%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHh-----chhHHHH-HHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          246 PGLILSAIIVDKI-----GRKLSMV-LMFVSACIFLLPLVFH---QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       246 ~~~~~~~~l~d~~-----gRr~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ++.++.+.++||+     |||+.++ .+....+++...+.+.   .+.+..........++..........+.+|.+|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5788899999999     9998644 4444444443333332   12122222222222333333344568899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVT-SCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .|+++.++.....++|..+++.+...+.+ ..+....+++.+++.++..+..++ .||+.
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999999999999999888777766 335555666666666666554444 57764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.54  E-value=3.9e-06  Score=81.89  Aligned_cols=148  Identities=15%  Similarity=0.198  Sum_probs=82.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ....+...++..+.|.++|.+|||...+.+.++..+-.+...-.++ +.......+. ... .+...+.....+|+.|.+
T Consensus        85 ~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~-Gvg-aG~~~~~~~~isEl~p~k  162 (599)
T PF06609_consen   85 TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY-GVG-AGVQELAALAISELVPNK  162 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccc
Confidence            3345666778888999999999999998887766554433332222 2221111111 111 122223455689999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHh-hcc-ccccc---C--cchhhhHHhhh
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS-LLF-PFETM---G--RELKDTVDAIE  387 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-~pet~---~--~~l~~~~~~~~  387 (388)
                      .|..+.++.....-+....+|.+...+....+.-+.+.++.+...++.+.. .++ +|+.+   +  .+..|...|+|
T Consensus       163 ~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD  240 (599)
T PF06609_consen  163 WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELD  240 (599)
T ss_pred             hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhh
Confidence            999888777655444444566665544333222344555554444443322 233 44321   2  23456677776

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.53  E-value=4.7e-06  Score=77.02  Aligned_cols=145  Identities=19%  Similarity=0.139  Sum_probs=88.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHH-hh---hchhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPL-VF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gR-r~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+..+.+.++++++|.+.||.+. |.+++.......+....+ ..   ....+..........++..+..++-.-+..|
T Consensus       307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE  386 (480)
T KOG2563|consen  307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVE  386 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeee
Confidence            344456678899999999999865 333443333333321111 11   1111221122223345556667777778889


Q ss_pred             ccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc----hhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515          312 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH----LRLAVILFEVVFVLAIASSLLFPFETMGRELKD  381 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~  381 (388)
                      ..=|..-++..|+.+..+++.+++-+++-+......+    ....-+.....+++....+.++.|+-+++..|+
T Consensus       387 ~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  387 TTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             eccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            8777778899999999999999888877776555544    222234444555666667777777777666554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.52  E-value=2.1e-06  Score=79.94  Aligned_cols=128  Identities=18%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHh-----chhHHH-HHHHHHHHHHHHHHhhhc--hh-HHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          248 LILSAIIVDKI-----GRKLSM-VLMFVSACIFLLPLVFHQ--SA-VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       248 ~~~~~~l~d~~-----gRr~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      .++.|.++||+     |||+.+ +.+....++....+.+..  .. +......+....+..........+.+|.+|++.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67899999998     898875 444444444433333321  11 1111222222222222233456689999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcccc--------hhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTSCH--------LRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +.+.++......+|..++|.+.+.+....+        ....+++.+++.+++.+...+..||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999998888999989888876665544        344566666666666555555556754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.51  E-value=4.5e-06  Score=80.05  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHH----HhchhHHHHHH-HHHHHHHHHHHhhhch--------------hH---HHHHHHHHH
Q 016515          237 VFIASLAELPGLILSAIIVD----KIGRKLSMVLM-FVSACIFLLPLVFHQS--------------AV---VTTVLLFGV  294 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d----~~gRr~~~~~~-~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~  294 (388)
                      ..+..+...+...+.|+++|    |+|||+.++.. .....+....+....+              ..   ..+......
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            44556667778888999999    59999988764 3333333333322111              00   111111111


Q ss_pred             HHhhhcccceeeeecccccccchh--hHHHHHHHHHHhHhHhHHHHHHHHhh--cc--------c-----chhHHHHHHH
Q 016515          295 RMCVTGTITVATIYAPEIYPTSAR--TTGFGVASSLGKVGGMVCPLVAVGLV--TS--------C-----HLRLAVILFE  357 (388)
Q Consensus       295 ~~~~~~~~~~~~~~~~El~p~~~R--~~~~~~~~~~~~i~~~~~p~~~~~~~--~~--------~-----~~~~~~~i~~  357 (388)
                      .++.+...+..-++.+|+.|++.|  +.+.++.+....+|+.+++.+.+...  ..        .     +....|.+-+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            223232333456789999999876  46888888888899988887654321  10        0     1123455666


Q ss_pred             HHHHHHHHHhhccccccc
Q 016515          358 VVFVLAIASSLLFPFETM  375 (388)
Q Consensus       358 ~~~~~~~~~~~~~~pet~  375 (388)
                      ++.+++.++..+..+|..
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            667788888888888865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10133 L-fucose transporter; Provisional

Probab=98.47  E-value=1.3e-05  Score=77.02  Aligned_cols=108  Identities=13%  Similarity=0.060  Sum_probs=71.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ......++..++.+..|.+.||+|||+++..+..+..+..+...   ...+........+....+..........+..|.
T Consensus        66 ~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~  145 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            34455677788999999999999999999988776665544331   222222222223333333333334455566787


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHh
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGL  343 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~  343 (388)
                      .|.+.|....++.+.+..+|..++|.+...+
T Consensus       146 ~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777788999988889999988776543

>PTZ00207 hypothetical protein; Provisional

Probab=98.47  E-value=9.7e-06  Score=79.54  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          247 GLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       247 ~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      ..+.+|++.||+|||++++++.+...+..+.....      .+.+...++.+....+....+........+.|| +.|++
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            45568999999999999998887766655444432      122221122222222222222334456788897 67999


Q ss_pred             HHHHHHHHHhHhHhH-HHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          321 GFGVASSLGKVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~-~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      +.|+......+|+.+ +|..... ... +....+++.++..++..++.+.+
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l-~~~-~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAF-FSD-NTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHH-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999875 4444443 332 23344555555555444444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.46  E-value=0.00018  Score=69.46  Aligned_cols=75  Identities=15%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             HHHHHHHhhccCcch-hhHHHHHHhhcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHHH
Q 016515           19 LVIFRCFVGVGLGGV-PVFLAYFLEFVPVS--HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA   93 (388)
Q Consensus        19 l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l~   93 (388)
                      ++++-.+.++|.|.. +...+++.|..|++  +|....++......+|..+++.+...+.+..|||+.|.++++..++
T Consensus       103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            343433444555543 55567899999986  6888888888888899999999998888888999999987764433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.44  E-value=1.6e-05  Score=75.86  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=75.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhHH--HHHH-HHHHHHhhhcccceeeeeccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVV--TTVL-LFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ...+..+...++.++.|++.||+|||+.++.+..+..+....... ......  .... ...........+........+
T Consensus        51 ~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (420)
T PRK09528         51 IFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEA  130 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhh
Confidence            344556677888999999999999999887655444332221111 000000  0011 111111111111111111222


Q ss_pred             ccc--cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          312 IYP--TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       312 l~p--~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      ..+  .+.|+...|..+..+.+|..++|.+.+.+.+. +...++++.+++++++.+..++..||.
T Consensus       131 ~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        131 YIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             HHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccc
Confidence            222  23456677888888899999999988877654 445566666666666666666555443

>TIGR00896 CynX cyanate transporter

Probab=98.43  E-value=4.7e-06  Score=77.59  Aligned_cols=108  Identities=10%  Similarity=-0.029  Sum_probs=69.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++..++.+..+++.||+|||+.++.+.+...+..+.. ...+........+...++.....+....+..|.+| +
T Consensus        41 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~  118 (355)
T TIGR00896        41 TALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q  118 (355)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c
Confidence            344566678889999999999999999888766554433332 22222222222222222222222344556788887 5


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      .|+++.++.+....+|..++|.+.+.+.+.
T Consensus       119 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896       119 RVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            799999999998889998888877766554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.39  E-value=2.4e-05  Score=74.00  Aligned_cols=132  Identities=13%  Similarity=0.067  Sum_probs=73.6

Q ss_pred             hhhHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhh--
Q 016515          243 AELPGLILSAIIVDKIGRKLSMV-LMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART--  319 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~--  319 (388)
                      ..+.+.+.+++ .||+|||+.++ .+....++.........+.+...+.............+....+..|..|++.|.  
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV  142 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence            34455666666 99999998754 333333332222223222222111111111111122233345566666665553  


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      ...++.+....+|..++|.+.+.+.+..+....+++.++..++..+.+++..||.+
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            23467777788999999999888776666666666666666666666666667654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.38  E-value=2e-05  Score=75.38  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHhhccCcch-hhHHHHHHhhcc--cCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHH
Q 016515           15 NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP--VSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPS   91 (388)
Q Consensus        15 ~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p--~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~   91 (388)
                      +.....++=++..+|.... ..+-+.+.|...  ++.||..++.......+|.+++..+++...+..++|..|.+.++..
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~  164 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP  164 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence            3445555555555555443 344567778763  3348888999889999999999999888888889999998887655


Q ss_pred             HHHHH-HHhcCCC
Q 016515           92 FALLL-FYGLAPE  103 (388)
Q Consensus        92 l~~~~-~~~~~pE  103 (388)
                      ++..+ ..+..+|
T Consensus       165 ~l~~~~~~~~~~e  177 (433)
T PF03092_consen  165 LLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHhhhh
Confidence            55433 4444454

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.33  E-value=9.5e-06  Score=76.53  Aligned_cols=130  Identities=16%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      ..++.++.+.+|++.||+|-|+++..+.+..+++...+.+..+.....+.-+...++-...+ ..+.+....+|++.|++
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence            44567788899999999999999998888877777666654333222222233222222333 66788999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHH--HHHHHHHHHHHHHhhccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV--ILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~  371 (388)
                      ++|+.++...+|.++++.+...+....+.....  .+-.....++.++.+++|
T Consensus       151 atsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999988887744322222211  222233345555555554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.33  E-value=6.1e-06  Score=82.63  Aligned_cols=106  Identities=12%  Similarity=0.063  Sum_probs=71.9

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-------------------------------------
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-------------------------------------  282 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-------------------------------------  282 (388)
                      ..++..++.++.+++.||.|||+.+.++.++.++..+.+..++                                     
T Consensus        77 ~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~  156 (633)
T TIGR00805        77 YEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPT  156 (633)
T ss_pred             hhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccc
Confidence            3456677888999999999999988777665554443332210                                     


Q ss_pred             ------------h-hH-HHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          283 ------------S-AV-VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       283 ------------~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                                  . .. ..++.-+...++....+++...+..|.+|++.|++..|+.+....+|..+++.+.+.+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       157 QCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             ccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence                        0 00 011112222233334445677899999999999999999999999999999888776654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.32  E-value=9.3e-06  Score=77.80  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=97.0

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--hhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchh
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL--VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  318 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  318 (388)
                      ..+.+++.+-++++.||+|-|+++..+.+++++..+.+  ....+.+...+.-+...+.....++....+.+...|++-|
T Consensus        83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er  162 (466)
T KOG2532|consen   83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER  162 (466)
T ss_pred             HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence            45678888889999999999999988877776644433  3333323334444555555556678888999999999999


Q ss_pred             hHHHHHHHHHHhHhHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHhhccc
Q 016515          319 TTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       319 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      ++..++.++...+|.+++-.+.+.+-+. .|....|.+++++.++-.++.+++.
T Consensus       163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998876577877776 6667778888888776655544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.27  E-value=4.4e-05  Score=72.44  Aligned_cols=130  Identities=17%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHh-----chhH-HHHHHHHHHHHHHHHHhhhc--hhHH-HHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          245 LPGLILSAIIVDKI-----GRKL-SMVLMFVSACIFLLPLVFHQ--SAVV-TTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       245 ~~~~~~~~~l~d~~-----gRr~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      .+..++.|.++||+     |||+ .++.+....+++...+.+..  ...+ ...+.+...++.....+....+.+|.+|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            56778899999999     8876 45555555544444433321  2222 12222222222223334566789999999


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      +.|+++.++......+|..+++.+...+.+. .+....+++.++..+++.+.. +..||++
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~  185 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE  185 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            9999999999988888888888877766664 244455666666655554433 3456654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.26  E-value=5.9e-06  Score=78.19  Aligned_cols=60  Identities=25%  Similarity=0.379  Sum_probs=52.7

Q ss_pred             cHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016515           15 NYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV   74 (388)
Q Consensus        15 ~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~   74 (388)
                      ..+.++++|++.|+|.|.....=.|++.....+.|.++.+....+..+|.++||.+..++
T Consensus       129 ~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  129 VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            567899999999999998766668999999999999999999999999999998887665

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.24  E-value=5.5e-05  Score=71.61  Aligned_cols=136  Identities=16%  Similarity=0.168  Sum_probs=74.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---hhc----hhHHH-HHHHHHHHHhhhcccceeee
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQ----SAVVT-TVLLFGVRMCVTGTITVATI  307 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~  307 (388)
                      ...+..+...++.+..|+++||+|||+.++.+....++......   ...    ..... ....+..........+....
T Consensus        43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  122 (396)
T TIGR00882        43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA  122 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence            34556677788899999999999999988766554433222211   111    01110 01011111111111222222


Q ss_pred             ecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          308 YAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       308 ~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +..|.-  +.++...|..+..+.+|..++|.+.+.+.+. +...++++.+++.++..++.+...||.
T Consensus       123 ~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       123 YIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-DPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            333322  2234466778888889999999887765443 455567666666666655555544553

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.17  E-value=2.1e-08  Score=96.59  Aligned_cols=104  Identities=17%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      .....++.++|+++.|++.||+|||+.++.+.++..+..+...+..   +.....+..+...++..+.......+..|..
T Consensus        52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~  131 (451)
T PF00083_consen   52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA  131 (451)
T ss_pred             HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445667889999999999999999999887777666555544433   3333333334444444455667889999999


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHH
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVA  340 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~  340 (388)
                      |++.|+...++......+|..++..+.
T Consensus       132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  132 PPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999988888777777766544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00889 2A0110 nucleoside transporter

Probab=98.16  E-value=5e-06  Score=79.28  Aligned_cols=89  Identities=18%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHH-HHHHHHHHHHHHHHHHHhcc------cchHHHHHHh
Q 016515           16 YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALS-AFWTAGTIFEASLAWVVMTR------LNWRWLLAFS   87 (388)
Q Consensus        16 ~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~l~~~~~~~------~~WR~~f~~~   87 (388)
                      ++.+++.+++.|++.+.. +....++.|++|+++||+..++.+ ..+.+|..+++.++..+.+.      +|||..|.+.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~  387 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            467788999999998865 556678999999999999999997 67889999999998877654      5799999888


Q ss_pred             hHHHHHH-HHHHhcCCCC
Q 016515           88 SVPSFAL-LLFYGLAPES  104 (388)
Q Consensus        88 ~i~~l~~-~~~~~~~pES  104 (388)
                      ++..++. ....++++|+
T Consensus       388 ~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            7776655 4455667876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.13  E-value=0.00027  Score=65.85  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             hhhhcCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHH
Q 016515            8 LLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--RLNWRWLLA   85 (388)
Q Consensus         8 ~l~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~--~~~WR~~f~   85 (388)
                      .+.-+.++...+-+.-+..|++.+...+-++|+--..|+++--++.+........|..+++.++..+..  ..+++.++.
T Consensus        86 ~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~  165 (412)
T PF01770_consen   86 LLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNY  165 (412)
T ss_pred             HHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            344567889999999999999988777777898777888887888888889999999998888887653  567888888


Q ss_pred             HhhHHHHHHHHHHhcCCCCch
Q 016515           86 FSSVPSFALLLFYGLAPESPR  106 (388)
Q Consensus        86 ~~~i~~l~~~~~~~~~pESp~  106 (388)
                      +......+.+++.+++|-.++
T Consensus       166 isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  166 ISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHcCCCCc
Confidence            876655566666677886444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.09  E-value=0.0025  Score=58.99  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             HHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhhHH
Q 016515           19 LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVP   90 (388)
Q Consensus        19 l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~-WR~~f~~~~i~   90 (388)
                      ....-.+.|+|.+.. ....+++.|.+|+++|++..++.-.+..+|.++++.+.....+.++ =|....+..++
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            455667788888765 3456788999999999999999999999999999988877665443 34443444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.09  E-value=6.9e-07  Score=87.23  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016515           16 YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV   74 (388)
Q Consensus        16 ~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~   74 (388)
                      +..++++.++.|+|.... +...+|+=|.++++.-+.+.++......+|..+|-+++...
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             -----------SSS----------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence            467899999999998875 66789999999999999999999999999998887776653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.06  E-value=9.4e-05  Score=70.89  Aligned_cols=139  Identities=13%  Similarity=0.126  Sum_probs=76.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHH----hchhHH-HHHHHHHHHHHHHHHhhhch----h--HHHHHHHHHHHHhhhccccee
Q 016515          237 VFIASLAELPGLILSAIIVDK----IGRKLS-MVLMFVSACIFLLPLVFHQS----A--VVTTVLLFGVRMCVTGTITVA  305 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~----~gRr~~-~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~  305 (388)
                      ..+..+...++..+.|.++||    +|||+. ++.+....++....+....+    .  .+.....+....+........
T Consensus        41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (437)
T TIGR00792        41 FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPY  120 (437)
T ss_pred             HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            344455667788889999998    677554 44555444444333332111    0  111111111111111111223


Q ss_pred             eeeccccc-ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          306 TIYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-------CHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       306 ~~~~~El~-p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      .++.+|+. |++.|++..++.+..+.+|+.+++.+.+.+...       .+....+.+++++.++..+..++..||++
T Consensus       121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            46778887 578899999998888888877766554444321       12223455566666666666666667764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.02  E-value=5.1e-05  Score=72.52  Aligned_cols=137  Identities=21%  Similarity=0.275  Sum_probs=98.5

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      ++..++.+...|.++||.|||..+....+.+.+-.+...+.. .+ ... ...........++...++.++....+.|+.
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            455567778889999999999988877666544333333322 22 111 111111222344566788999999999999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchh
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELK  380 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~  380 (388)
                      ..|+.+..-..+..++|.+...+....+...++.+-.+..+++.+...+.+||+...+.+
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            999999998899999999988877776666677777788888888899889998755443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.00  E-value=6e-05  Score=70.94  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeeecccccccc--hhh
Q 016515          245 LPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS--ART  319 (388)
Q Consensus       245 ~~~~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~--~R~  319 (388)
                      ....+++|++.||+ |+|+.++++.++..+--+.+....  ......+.+..+.......=+-...+..|++|++  .|-
T Consensus        75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence            45678899999995 999988887766554333333331  1111111111111111122234556788888643  277


Q ss_pred             HHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccc
Q 016515          320 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       320 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      .+.++.+...++|++++|.+.+++.+..+.+..|.+.++-..++.+..++..
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7888888889999999999999887766655555555555555555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.97  E-value=9.5e-05  Score=71.80  Aligned_cols=130  Identities=22%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHh--hhcccceeeeecccccccchhhH
Q 016515          243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMC--VTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      .....+.+.+.+.||+|.|.+.+.+..++.+.++.-.+..+.+ ...+.+....+  ....+...-.+.. -+..+.|+.
T Consensus        93 ~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~-~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~l  170 (509)
T KOG2504|consen   93 VYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW-QLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRAL  170 (509)
T ss_pred             HHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHH
Confidence            3455667788999999999999998888777666655544433 22333333222  1222222334455 455667999


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      |+|++..-..+|.++-|.+.-++.+..+..++.++++.+.+-+.++...+.|.+
T Consensus       171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~  224 (509)
T KOG2504|consen  171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS  224 (509)
T ss_pred             HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999888888888887888888888888887777777776643

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.83  E-value=0.00055  Score=64.47  Aligned_cols=119  Identities=11%  Similarity=0.112  Sum_probs=67.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHh-hhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSAC-IFLLPLV-FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      +..+...++..+.+.++||.|||.........+. ++.+.+. ..++.+...........+.....+....+..|  +.+
T Consensus        47 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~  124 (382)
T TIGR00902        47 AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT--WQK  124 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH--HHH
Confidence            3455567778889999999998654322221111 1111111 22222222222221222222233444444444  256


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHH
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV  359 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~  359 (388)
                      .|+++.|..+..+.+|..++|.+.+.+.+..+....+.+....
T Consensus       125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            7899999999999999999999888887766555555444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.82  E-value=0.00031  Score=61.32  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hc----hhHHHHHHHHH-HHHhhhcccceeeeec
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQ----SAVVTTVLLFG-VRMCVTGTITVATIYA  309 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~  309 (388)
                      .....++...| +.+|.+.|+.|.|.+++++.+...+-...+..  .+    ...+.+.+... ...+.....+......
T Consensus        43 ~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~  121 (250)
T PF06813_consen   43 STAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC  121 (250)
T ss_pred             HHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence            34445555554 78899999999999988887765543333322  11    12222222211 1111111112233445


Q ss_pred             ccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          310 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       310 ~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      .+.||. .||++.|+.-....+++.+-+.+...+...
T Consensus       122 ~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  122 VRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            689985 799999999999888888776666554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.00022  Score=68.72  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=99.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      ..+..++++++.+.++.+.||+.-.+.+..+.++.+++.+.....++....+.+-+...++=...++..-.++.-.|..+
T Consensus        87 ~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~  166 (495)
T KOG2533|consen   87 DTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS  166 (495)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh
Confidence            34556778999999999999999655555544444444333222333333344445554555566777788999999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVT------SCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .|++-.|+-++.+.+|+++++.++..+..      ..+..+.|++-+++.++.+++++++.|+...
T Consensus       167 e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  167 ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999999999999999988876432      2233456788888888888888888777554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.77  E-value=0.00099  Score=62.73  Aligned_cols=135  Identities=11%  Similarity=0.080  Sum_probs=72.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLM-FVSACIFLLPLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ..+..+...++.++.+.++||+|||....-. ...+.++.+.... .++.+...+..+....+.....+....+..+.  
T Consensus        45 ~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--  122 (382)
T PRK11128         45 LGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--  122 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--
Confidence            3344556677888899999999984321110 1111111111122 22222222222222222222333333444443  


Q ss_pred             cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          315 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       315 ~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .+.|+.+.+..+..+.+|..++|.+.+.+.+..+....+++.++..++..+.. +..||.
T Consensus       123 ~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~  181 (382)
T PRK11128        123 QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPTI  181 (382)
T ss_pred             HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCCC
Confidence            34578888888988999999999999888776665555655554444443333 334554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.72  E-value=0.00082  Score=63.43  Aligned_cols=70  Identities=16%  Similarity=0.044  Sum_probs=48.6

Q ss_pred             eeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          305 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       305 ~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .-.+..|..+++.++...+.......+|..+++...+.+.+..+...++++.+++.++..+..++.+||.
T Consensus       118 ~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       118 TDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3446778888888777777776666788888887766666666666677777777766666666655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.011  Score=56.11  Aligned_cols=57  Identities=16%  Similarity=0.103  Sum_probs=40.6

Q ss_pred             ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHH
Q 016515           14 PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASL   70 (388)
Q Consensus        14 ~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l   70 (388)
                      +|-+.+++.-.+.|+|.+.. ..-..|++|.++++.+.+..++.=.....+.++|+..
T Consensus       100 ~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  100 PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            34566889999999998865 3456799999999998887776544444444555433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.67  E-value=0.01  Score=56.99  Aligned_cols=261  Identities=18%  Similarity=0.191  Sum_probs=140.3

Q ss_pred             HhhccCcc--h-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHHHH-HHHHhc
Q 016515           25 FVGVGLGG--V-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGL  100 (388)
Q Consensus        25 l~G~~~g~--~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l~~-~~~~~~  100 (388)
                      +.|+..|.  . ....+|+++.+..++|....++....+..+..+++.++.......|.-.+|.+..+..++. ...+.+
T Consensus       119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~  198 (463)
T KOG2816|consen  119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF  198 (463)
T ss_pred             hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence            56665443  2 3456899999999999999999999999999999999888777788888888888776665 556778


Q ss_pred             CCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhhcc
Q 016515          101 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS  180 (388)
Q Consensus       101 ~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  180 (388)
                      +|||-+-   +.+.+ +  .       -.+..++. ..     . .+                       ....++.+.+
T Consensus       199 l~Esl~~---~~~~~-~--~-------~~~~~~~~-~~-----~-~~-----------------------~~~~~~~~~~  235 (463)
T KOG2816|consen  199 LPESLQE---KERSD-A--T-------LRELTPGS-LD-----S-SH-----------------------VADAFQSLTK  235 (463)
T ss_pred             cccccCc---ccccc-c--c-------ccccCCCc-cc-----c-hh-----------------------hhhhhhhhcc
Confidence            9998530   11100 0  0       00000000 00     0 00                       0000111111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhcCCCCCCCCcccccCCCCCchhHH-HHHHHHhhhhHHHHHHH-H
Q 016515          181 RKLIRTTLLLWVLFFANVFSYYGAV-----LLTSKLSSGDNKCGSKVLHADKSKDNSLYV-DVFIASLAELPGLILSA-I  253 (388)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~  253 (388)
                      .+..|..+.+...   ..+.+..-.     .....+.            .....+...+. .....++...++.++.. .
T Consensus       236 ~~~~r~~l~l~l~---~~~~~~~~~~~~~~~~~~yl~------------~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~  300 (463)
T KOG2816|consen  236 VGPDRLLLLLLLV---AFLSSLPEAGGASDVLLLYLK------------AKFGWNKKEFSDLLSLVSILGIISQLLLLPL  300 (463)
T ss_pred             cCCCccchHHHHH---HHHHHHHHhcCceeEEEEEEe------------eecCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111   111111000     0000011            00111111111 12233444566666666 6


Q ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhH
Q 016515          254 IVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGG  333 (388)
Q Consensus       254 l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~  333 (388)
                      +...+|-|+....++..-.+......+....+.... ............+...++.+-..+++-+|+..++...+..+.+
T Consensus       301 l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~-~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~  379 (463)
T KOG2816|consen  301 LSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFA-AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG  379 (463)
T ss_pred             HHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhH-HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhh
Confidence            777788888777676655555544455444332211 1111122223345566778888899999999999999999999


Q ss_pred             hHHHHHHHHhh
Q 016515          334 MVCPLVAVGLV  344 (388)
Q Consensus       334 ~~~p~~~~~~~  344 (388)
                      +++|.+...+.
T Consensus       380 ~~~~~~~~~i~  390 (463)
T KOG2816|consen  380 VVSPALYGNIF  390 (463)
T ss_pred             hhhHHHHHHHH
Confidence            99887765543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.0028  Score=58.29  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--ch-hHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QS-AVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      .+....++...++-.+++.+|+|+|+-++.+..+.++...++...  .. ........|....+....=+....+.+.+.
T Consensus        54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg  133 (422)
T COG0738          54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLG  133 (422)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence            344455678888899999999999999999888776655554421  11 111111122221111111123556888888


Q ss_pred             ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          314 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       314 p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      |++..+.-.++...+..+|+.++|.+...+..
T Consensus       134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            88888888999999999999999998877665

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.52  E-value=0.003  Score=62.94  Aligned_cols=87  Identities=10%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---c---------------
Q 016515           18 SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR---L---------------   78 (388)
Q Consensus        18 ~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~---~---------------   78 (388)
                      .++++-++.|+|.... +...+|+=|.+.+++-+.+.++......+|.++|-+++.+....   +               
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI  318 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI  318 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence            6788999999998764 66778999999999999999999999999999988888775321   1               


Q ss_pred             -chHHHHHHhhHHHHHHHHHHhcCCCC
Q 016515           79 -NWRWLLAFSSVPSFALLLFYGLAPES  104 (388)
Q Consensus        79 -~WR~~f~~~~i~~l~~~~~~~~~pES  104 (388)
                       .|..=|++++...++..+..+++|..
T Consensus       319 GAWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  319 GAWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence             37776777777766666666666644

>PRK11462 putative transporter; Provisional

Probab=97.52  E-value=0.0027  Score=61.45  Aligned_cols=133  Identities=13%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             HhhhhHHHHHHHHHHHH----hchhHHHH-HHHHHHHHHHHHHhh-hc-h--h--HHHHHHHHHHHHhhhcccce-eeee
Q 016515          241 SLAELPGLILSAIIVDK----IGRKLSMV-LMFVSACIFLLPLVF-HQ-S--A--VVTTVLLFGVRMCVTGTITV-ATIY  308 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~----~gRr~~~~-~~~~~~~~~~~~~~~-~~-~--~--~~~~~~~~~~~~~~~~~~~~-~~~~  308 (388)
                      -+...+.-.+.|.++||    +|||+.++ .+....++....+.. +. +  .  .+..+..+....+. ....+ .+++
T Consensus        55 ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~-t~~~ipy~al  133 (460)
T PRK11462         55 RALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY-TVVNIPYCAL  133 (460)
T ss_pred             HHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HHHhccHHHH
Confidence            33445667778999996    58877665 343444443333322 21 1  1  11111111111222 22233 3478


Q ss_pred             cccccc-cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-------hhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          309 APEIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       309 ~~El~p-~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      .+|+.+ ++.|++..+.-...+.+|+.+++.+...+....+       ......+++++.+++.++++...+|.
T Consensus       134 ~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        134 GGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            889876 8999999999999999888887766544433221       11123445555555555555545554

>TIGR00788 fbt folate/biopterin transporter

Probab=97.52  E-value=0.0014  Score=63.59  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhc-----hhHHHHHHHHHHH-HHHHHHhhhchh-HHHHHHHHHHHHhhhcccceeeeecccccccchhhHH
Q 016515          249 ILSAIIVDKIG-----RKLSMVLMFVSAC-IFLLPLVFHQSA-VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  321 (388)
Q Consensus       249 ~~~~~l~d~~g-----Rr~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~  321 (388)
                      .+.|.++||++     ||+.++.+.+..+ +....+....+. .....+.+...++....-...-.+..|..+ +.++.+
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~  156 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG  156 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence            34899999996     6666665555442 222222222221 122222233323322222345567888887 444443


Q ss_pred             ---HHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          322 ---FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       322 ---~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                         .+.......+|..+++.+.+.+.+..+....+++.+++.++..+ ..++.||.+
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~  212 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERR  212 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccc
Confidence               34444444578889998888877765555666666666666633 334456754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=97.49  E-value=0.00074  Score=65.01  Aligned_cols=137  Identities=13%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHH----hchhHHHH-HHHHHHHHHHHHH-hhhc---h--hHHHHHHHHHHHHhhhcccceee
Q 016515          238 FIASLAELPGLILSAIIVDK----IGRKLSMV-LMFVSACIFLLPL-VFHQ---S--AVVTTVLLFGVRMCVTGTITVAT  306 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~----~gRr~~~~-~~~~~~~~~~~~~-~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~  306 (388)
                      .+.-+...+...+.|+++||    +|||+.++ .+....++..... ..+.   .  ..+..+.......+.........
T Consensus        52 ~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~  131 (444)
T PRK09669         52 LVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYC  131 (444)
T ss_pred             HHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHH
Confidence            33444456677788999998    67765554 4444443333222 2221   1  11111111111112222222234


Q ss_pred             eeccccc-ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-------hhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          307 IYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       307 ~~~~El~-p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      ++.+|+. +++.|++..+.....+.+|+.+++.+...+....+       ......+++++.+++.+.+++..+|.
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            6788987 56789999899888888888877655443332211       11134445555555555555544453

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.47  E-value=0.00043  Score=66.30  Aligned_cols=130  Identities=17%  Similarity=0.156  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHH----HhchhHHHH-HHHHHHHHHHHHHhhh-c---hh----HHHHHHHHHHHHhhhcccceeeeecc
Q 016515          244 ELPGLILSAIIVD----KIGRKLSMV-LMFVSACIFLLPLVFH-Q---SA----VVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       244 ~~~~~~~~~~l~d----~~gRr~~~~-~~~~~~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      ..+...+.|.++|    |+|||+..+ .+....++....+... .   +.    .+..+..+....+.........++.+
T Consensus        50 dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~  129 (428)
T PF13347_consen   50 DAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIP  129 (428)
T ss_pred             hhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCc
Confidence            3444447788999    789877654 4555555544444322 1   11    11111111222222222223457899


Q ss_pred             cccc-cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-------hhHHHHHHHHHHHHHHHHhhccccc
Q 016515          311 EIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       311 El~p-~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      |+.+ ++.|.+..+.....+.+|+.+.+.+.+.+.+..+       ......+++++.+++.++..+..+|
T Consensus       130 ~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  130 ELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             cccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            9997 5789999999999988888766665555443322       1233455666666777777777777

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.47  E-value=0.00058  Score=63.64  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=63.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh---chh--HH--HHHHHHHHHHhhhcccceeeee
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---QSA--VV--TTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      ...+..++.+.|.++.|++.||+|||+++...+++..++.+....+   .+.  .+  ..++-+...+...+=+|+..++
T Consensus        89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI  168 (538)
T KOG0252|consen   89 VNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATI  168 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHH
Confidence            3455677789999999999999999999877766665555433321   111  11  1122233344555667888899


Q ss_pred             cccccccchhhHHHHHHHHHH
Q 016515          309 APEIYPTSARTTGFGVASSLG  329 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~  329 (388)
                      ++|---.+-|++-.+..-++.
T Consensus       169 ~SE~an~~~RGa~iaavFa~Q  189 (538)
T KOG0252|consen  169 MSESANKKTRGAFIAAVFAMQ  189 (538)
T ss_pred             hhhhhhhccccceeEEEEEec
Confidence            999999999988766654443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.41  E-value=0.0032  Score=61.16  Aligned_cols=137  Identities=12%  Similarity=0.100  Sum_probs=70.5

Q ss_pred             HHHHhhhhHHHHHHHHHHH----HhchhHHH-HHHHHHHHHHHHHHhhhc--hhH----HHHHHHHHHHHhhhcccceee
Q 016515          238 FIASLAELPGLILSAIIVD----KIGRKLSM-VLMFVSACIFLLPLVFHQ--SAV----VTTVLLFGVRMCVTGTITVAT  306 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d----~~gRr~~~-~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~  306 (388)
                      .+.-+...+...+.|.++|    |+|||+.+ +.+....++....+....  +..    +..+.......+.........
T Consensus        49 ~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~  128 (473)
T PRK10429         49 LVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFW  128 (473)
T ss_pred             HHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHH
Confidence            3344445666777899999    55986544 445555444433332211  111    111111111112222222344


Q ss_pred             eeccccc-ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc---ch----hHHHHHHHHHHHHHHHHhhcccccc
Q 016515          307 IYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HL----RLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       307 ~~~~El~-p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~---~~----~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      ++.+|+. +++.|.+..+.-...+.+++++.+.+...+.+..   +.    .....+++++.+++.+..++..||.
T Consensus       129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            6789998 6999999999877777777666654443322211   11    1122344455455555555545664

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.30  E-value=0.0059  Score=58.23  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+.-.++++..++.+++++|+|+-+++..++.+...=.+...+-++.|..+-+-+.-.......|...-.|++...|++.
T Consensus       413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l  492 (618)
T KOG3762|consen  413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL  492 (618)
T ss_pred             hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            44456678889999999999999998887777766645554444555543333233333333455666678999999999


Q ss_pred             hhHHHHHHHHHH-hHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHh
Q 016515          318 RTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  367 (388)
Q Consensus       318 R~~~~~~~~~~~-~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  367 (388)
                      |+++.++....- .+|=.++.++.+.+....+.-..+.++++.+++..+..
T Consensus       493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence            999999987764 34555566666655555555556666766655444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.29  E-value=0.019  Score=54.43  Aligned_cols=94  Identities=16%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             hhhhhhhhhcC--ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016515            3 TSVAGLLSSFS--PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMVALSAFWTAGTIFEASLAWVVMTR   77 (388)
Q Consensus         3 ~~i~~~l~~~~--~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~   77 (388)
                      ..++-++.+.+  .+...++++=.+.++|.|.. +..++.+.|..|++.  |-...+++..+..+|.++++.+.....+.
T Consensus       102 ~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~  181 (498)
T COG3104         102 MAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN  181 (498)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence            35566666666  47888999999999999987 788889999998753  44445667778889999999999998889


Q ss_pred             cchHHHHHHhhHHHHHHHH
Q 016515           78 LNWRWLLAFSSVPSFALLL   96 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~~~   96 (388)
                      .||...|..+++-..+.++
T Consensus       182 ~g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         182 YGWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             hCHHHHHHHHHHHHHHHHH
Confidence            9999999998876554433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.23  E-value=0.0086  Score=57.94  Aligned_cols=138  Identities=20%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             HHHhhhhHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHHhh-hc-hhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          239 IASLAELPGLILSAIIVDKIGRKLSMVLM-FVSACIFLLPLVF-HQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       239 ~~~~~~~~~~~~~~~l~d~~gRr~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ++.+...+...+.|-++|+-|+|+.++.. ..++.++...+.+ .. ..+...++......+.........++.+|+.++
T Consensus        78 is~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~  157 (477)
T PF11700_consen   78 ISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARP  157 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Confidence            44555566667788899998877766543 3444444444443 22 232333333333333333333456789999988


Q ss_pred             chh--------------------------hHHHHHHHHHHhHhHhHHHHHHHHhhcccc-h-------hHHHHHHHHHHH
Q 016515          316 SAR--------------------------TTGFGVASSLGKVGGMVCPLVAVGLVTSCH-L-------RLAVILFEVVFV  361 (388)
Q Consensus       316 ~~R--------------------------~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~-------~~~~~i~~~~~~  361 (388)
                      +-+                          ++..+...+.|.+|+.+.-.+...+....+ .       ...+.+.++..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~  237 (477)
T PF11700_consen  158 EPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWL  237 (477)
T ss_pred             ChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence            888                          999999999999999887554433322111 1       223444555555


Q ss_pred             HHHHHhhcccccccC
Q 016515          362 LAIASSLLFPFETMG  376 (388)
Q Consensus       362 ~~~~~~~~~~pet~~  376 (388)
                      +..+-.++..||.++
T Consensus       238 vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  238 VFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHhCCCCCC
Confidence            555666666777754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.16  E-value=0.0033  Score=56.56  Aligned_cols=95  Identities=18%  Similarity=0.215  Sum_probs=67.8

Q ss_pred             cCccHHHHHHHHHHhhccCcchhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHhhH
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM--TRLNWRWLLAFSSV   89 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~--~~~~WR~~f~~~~i   89 (388)
                      +.++.+++=+.-+..|...+..-+-++|+-+..+|+++-+..+..-...-.|..++..++..+.  +..+++.+-.++-.
T Consensus        91 ~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~  170 (433)
T KOG3810|consen   91 FGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLA  170 (433)
T ss_pred             hcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHH
Confidence            4455555555666666666555555678889999999999999998888888888888887764  35677777776655


Q ss_pred             HHHHHHHHHhcCCCCch
Q 016515           90 PSFALLLFYGLAPESPR  106 (388)
Q Consensus        90 ~~l~~~~~~~~~pESp~  106 (388)
                      -..+......++|.-||
T Consensus       171 ~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  171 EVTIAVLLALFLPRVKR  187 (433)
T ss_pred             HHHHHHHHHhhCCCCch
Confidence            55555666677776554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.03  E-value=0.13  Score=48.11  Aligned_cols=97  Identities=23%  Similarity=0.194  Sum_probs=55.7

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcc-hhhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccch
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-RLNW   80 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-~~~W   80 (388)
                      +.++-++.+++++.+.=+++-++.+++.|. +.....+. ...|+.    ..+....+.+.|.++|+..-..+.+ ..+-
T Consensus        99 ~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~  173 (402)
T PF02487_consen   99 SAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGKS----SLSAWSSGTGGAGLVGALYYLGLTTLGLSP  173 (402)
T ss_pred             HHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCcc----ccccccCCcChhhHHHHHHHHHHHHhCcCH
Confidence            456677778899999888999999998874 44433443 344542    2344555555556666654433322 2333


Q ss_pred             HHHHHHhh-HHHHHHHHHHhcCCCC
Q 016515           81 RWLLAFSS-VPSFALLLFYGLAPES  104 (388)
Q Consensus        81 R~~f~~~~-i~~l~~~~~~~~~pES  104 (388)
                      |..+.+.. +|.+..+..++.+|.+
T Consensus       174 ~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  174 RTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence            66555544 4444444444455543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.88  E-value=0.025  Score=51.73  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=76.2

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccchhhH
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  320 (388)
                      ..+..+++...+.+.|++|||+..........+....-....+.....++.....+.+ +..+..-++-.|..|...|.+
T Consensus       123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~-gg~pv~~~~yle~lp~~~r~~  201 (528)
T KOG0253|consen  123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV-GGLPVDSAIYLEFLPSSHRWL  201 (528)
T ss_pred             HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC-CCccHhHHHHHHhccCcCCCc
Confidence            3455777888899999999999877666655444433222222222233333443433 335666677899999999998


Q ss_pred             HHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          321 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       321 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      -+=+. +.-.+|.+..-.+.-..+...+..+-.+..+....+.++ ..+..||..
T Consensus       202 ~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ESp  254 (528)
T KOG0253|consen  202 LTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYESP  254 (528)
T ss_pred             chhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcccCc
Confidence            87777 666677777665554434444322222222333333333 333457754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.82  E-value=0.011  Score=55.61  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             HHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---h-h--chhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          240 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-H--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       240 ~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      ..+..+....+.|.+.||+|.|+-++....+..+...++.   + +  +.+.+ .....+..+......+...  ..|-+
T Consensus        52 ~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~-lg~iig~i~l~~~f~~~~~--~~Ea~  128 (412)
T PF01306_consen   52 GSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFW-LGAIIGGIYLGLVFNAGVP--LSEAY  128 (412)
T ss_dssp             HHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-H-HHHHHTTTTTTTTTTTHHH--HHHHH
T ss_pred             HHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccch--HHHHH
Confidence            3445566677889999999977655544333222211111   1 1  11111 1111111111111111111  12333


Q ss_pred             cc---chhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccccc
Q 016515          314 PT---SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  373 (388)
Q Consensus       314 p~---~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pe  373 (388)
                      -.   +..+.-.|=.+..|.+|-.++..+.+.+.+. +++..+++..+..++..++.++..|+
T Consensus       129 ~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  129 AERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             HHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             HHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            11   1223336666777888888888888887753 44555665555555555555555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.74  E-value=0.05  Score=54.74  Aligned_cols=100  Identities=13%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhh---c--hhHH---HHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          245 LPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFH---Q--SAVV---TTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       245 ~~~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~---~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      .+..+++|++.|+ +||++.++.+.++..+....+...   .  +...   ....+..+..+..+.-+.......|.++.
T Consensus        37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~  116 (654)
T TIGR00926        37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE  116 (654)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence            4556778999997 699998877666544332222221   1  0111   11111111122222224455667777764


Q ss_pred             c---hhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          316 S---ARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       316 ~---~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      +   .|.....+.+..+++|+++++.+.+++.
T Consensus       117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926       117 RQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   4778899999999999999988888765

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.71  E-value=0.18  Score=48.60  Aligned_cols=41  Identities=7%  Similarity=-0.085  Sum_probs=37.3

Q ss_pred             eeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          304 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       304 ~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      +.|.+++|+++++.-.+-.++....+++|..+++.+..++.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999998776654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.68  E-value=0.039  Score=51.76  Aligned_cols=110  Identities=18%  Similarity=0.109  Sum_probs=66.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-Hhhhch---hHHHHHHHHHHHHhh--h--cccceeeee
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-LVFHQS---AVVTTVLLFGVRMCV--T--GTITVATIY  308 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~--~--~~~~~~~~~  308 (388)
                      ..+..+.+++-.+.+.|+.||+|-|...+++.....+-... .....+   ....--+...+....  .  ....++.-+
T Consensus        85 smIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPski  164 (480)
T KOG2563|consen   85 SMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKI  164 (480)
T ss_pred             HHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHH
Confidence            44556777888899999999999999888877655442221 111111   111101111111111  1  112334456


Q ss_pred             cccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcc
Q 016515          309 APEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  346 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~  346 (388)
                      ..-.||++.|++|..++...+.+|..++..+.+.+...
T Consensus       165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            66779999999999999998888887776555444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.50  E-value=0.27  Score=44.99  Aligned_cols=133  Identities=14%  Similarity=0.006  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccce--eee---ecccccccchh
Q 016515          244 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITV--ATI---YAPEIYPTSAR  318 (388)
Q Consensus       244 ~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~El~p~~~R  318 (388)
                      ..+...+.|.+.||+|||+.-+...+.-++..+.....+-. ...+--+.........++.  .|.   .-..-+|.+-.
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~-~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYP-VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            34455667889999999998776665555544433222211 1111111111111111121  111   12234566655


Q ss_pred             hHHHHHHHHH-HhHhHhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          319 TTGFGVASSL-GKVGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       319 ~~~~~~~~~~-~~i~~~~~p~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      +...+..... +.+.++.+-.+...+.+.  .+.-.|+..-..+.+++.+++...-+|+.+.
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            5555544422 222333333333333332  2335577666667777777777666787654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.35  E-value=0.03  Score=49.88  Aligned_cols=88  Identities=26%  Similarity=0.419  Sum_probs=65.0

Q ss_pred             hhhhhhcCcc--HHHHHHHHHHhhccCcch-hhHHHHHHhhccc-CchhhHHHHHHH-HHHHHHHHHHHHHHHHh--ccc
Q 016515            6 AGLLSSFSPN--YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPV-SHRGRWMVALSA-FWTAGTIFEASLAWVVM--TRL   78 (388)
Q Consensus         6 ~~~l~~~~~~--~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~~G~~~~~~l~~~~~--~~~   78 (388)
                      +.++.++.++  ...+++.|+++|++.|.. +....++.|+.|+ ++|+...+.... ....|.++++.++....  ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T COG0477          82 GTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLW  161 (338)
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456666665  899999999999998865 6777899999998 778888887777 57778787775554433  246


Q ss_pred             chHHHHHHhhHHHHH
Q 016515           79 NWRWLLAFSSVPSFA   93 (388)
Q Consensus        79 ~WR~~f~~~~i~~l~   93 (388)
                      +||..|....+....
T Consensus       162 ~~~~~~~~~~~~~~~  176 (338)
T COG0477         162 GWRAAFLLAALLGLL  176 (338)
T ss_pred             chHHHHHHHHHHHHH
Confidence            899976666555433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.31  E-value=0.019  Score=55.04  Aligned_cols=128  Identities=22%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHh---c--hhHHHHHHHHHHHHHHHHHhh-hc---hhHHHHHHHHHHHHhhhcccceeeeeccccc---cc
Q 016515          248 LILSAIIVDKI---G--RKLSMVLMFVSACIFLLPLVF-HQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIY---PT  315 (388)
Q Consensus       248 ~~~~~~l~d~~---g--Rr~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~---p~  315 (388)
                      -.+.|.++|.+   |  ||+-++++..++.+..+.+.. ..   +......+++...++....-.+.-.+.+|..   |.
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            34678889986   3  444445555555443333332 11   1122222233332322222223444556664   55


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      + |+.-.+.+..+..+|++++..+.+.+.+..+....+.+.+++.++..+..+++.+|.+.
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~  180 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKV  180 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccc
Confidence            5 88888888888889999998888887776655555666676766666667777777433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.26  E-value=1.1  Score=42.68  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH----HHhhhch---hHHHHHHHHHHHHhhhcccc---eee
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL----PLVFHQS---AVVTTVLLFGVRMCVTGTIT---VAT  306 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~  306 (388)
                      -.+..+.++.|+++..++.+|+|..+.-+++......++.    .+....+   ......++.+...+=.|.++   ...
T Consensus       299 R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~  378 (432)
T PF06963_consen  299 RGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVT  378 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4455667788999999999999988876666554333222    2222221   22222222222222223333   345


Q ss_pred             eecccccccchhhHHHHHHHHHHhHhHhHHH
Q 016515          307 IYAPEIYPTSARTTGFGVASSLGKVGGMVCP  337 (388)
Q Consensus       307 ~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p  337 (388)
                      .+.-|..|.+.|++-.|+-++..++...+.-
T Consensus       379 qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  379 QIMQENVPESERGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             HhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999988887653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.094  Score=50.06  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHH----hchhHHHH-HHHHHHHHHHHHHhhhc------hhHHHHHHHHHHHHhhhcccceeeeeccccc
Q 016515          245 LPGLILSAIIVDK----IGRKLSMV-LMFVSACIFLLPLVFHQ------SAVVTTVLLFGVRMCVTGTITVATIYAPEIY  313 (388)
Q Consensus       245 ~~~~~~~~~l~d~----~gRr~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  313 (388)
                      .+.-.+.|.++||    +||||.++ .+.+..++...++....      +..+..+..+....+.....-...++.+|+-
T Consensus        62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT  141 (467)
T COG2211          62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT  141 (467)
T ss_pred             HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence            3344566778886    57766554 44454444444433321      2223333333333343333233457888886


Q ss_pred             -ccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccch-------hHHHHHHHHHHHHHHHHhhccccccc
Q 016515          314 -PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-------RLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       314 -p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                       .++.|.+..+.-..++.+|+++...+.+++....+.       .....+++++..++.+++++-.+|..
T Consensus       142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             577899999999999999888776666555443221       12345555666666666666655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.10  E-value=0.22  Score=47.19  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gR-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ..+..+..+++..+.|.+.||.++ |+.+.+..+++++.+.......+.+....+.....++.....++.-+++-+... 
T Consensus        43 ~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~-  121 (400)
T PF03825_consen   43 LAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG-  121 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc-
Confidence            344566678889999999999864 555555555555544444333333322222222222222223333334333332 


Q ss_pred             chhhHHHHHHHHHHhHhHhHH
Q 016515          316 SARTTGFGVASSLGKVGGMVC  336 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~  336 (388)
                       .++.-.|-.+..|.+|=.++
T Consensus       122 -~~~~~YG~iRlwGSiGf~~~  141 (400)
T PF03825_consen  122 -DRGKDYGRIRLWGSIGFIVA  141 (400)
T ss_pred             -cccCCCCcchhhhhHHHHHH
Confidence             23444555555555554444

>PRK09848 glucuronide transporter; Provisional

Probab=95.75  E-value=0.3  Score=47.01  Aligned_cols=29  Identities=10%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHh----chhHHHH
Q 016515          237 VFIASLAELPGLILSAIIVDKI----GRKLSMV  265 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~----gRr~~~~  265 (388)
                      ..+..+...++..+.|+++||.    |||+.++
T Consensus        50 ~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~   82 (448)
T PRK09848         50 LLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFL   82 (448)
T ss_pred             HHHHHHHHHHhhhhheeeeecCCCCCcCchHHH
Confidence            4455566778889999999996    7777553

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.71  E-value=0.24  Score=39.96  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      ...+......++++++..+++++|.|+.++++.++-.+......+.+.. ..........+.....+.....+..|..+.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~-~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSY-TLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3444455567788889999999999999998887766655554443322 212222222233333445555678888888


Q ss_pred             chhhHHHHHHHHHHhHhHhHHHHHH
Q 016515          316 SARTTGFGVASSLGKVGGMVCPLVA  340 (388)
Q Consensus       316 ~~R~~~~~~~~~~~~i~~~~~p~~~  340 (388)
                      +.|++-.++.-.+...+.+++..+.
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887777666555555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.54  E-value=0.083  Score=46.26  Aligned_cols=88  Identities=14%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHH
Q 016515           14 PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF   92 (388)
Q Consensus        14 ~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l   92 (388)
                      ++++.+.+.-++.|.+.+.. .+......+.+|. +||.+.++.....+++..+-..+...+.+...-+.++.....|.+
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~  172 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAV  172 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            46788888888888876543 3333444578885 799999999999999988777776666666667777777777777


Q ss_pred             HHHHHHhcCC
Q 016515           93 ALLLFYGLAP  102 (388)
Q Consensus        93 ~~~~~~~~~p  102 (388)
                      +.++..+++.
T Consensus       173 v~l~~~~~vr  182 (250)
T PF06813_consen  173 VCLVAMFFVR  182 (250)
T ss_pred             HHHHHhhhee
Confidence            6555544443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.03  E-value=0.037  Score=53.04  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHhh
Q 016515           11 SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALS-AFWTAGTIFEASLAWVVMTRLNWRWLLAFSS   88 (388)
Q Consensus        11 ~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~   88 (388)
                      ...+|.|+.+..-++||+..+.. ..+.+|++...||+.|..++++.+ ...++|--+|++++....+.++=|..|.+.+
T Consensus       454 S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g  533 (618)
T KOG3762|consen  454 SYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG  533 (618)
T ss_pred             HHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence            45678899999999999999876 566789999999999999988764 6778888889999988888899999998888


Q ss_pred             HHHHHHHHHH
Q 016515           89 VPSFALLLFY   98 (388)
Q Consensus        89 i~~l~~~~~~   98 (388)
                      +..++.+.+.
T Consensus       534 iAcl~~l~~~  543 (618)
T KOG3762|consen  534 IACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHH
Confidence            8777665443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.98  E-value=0.67  Score=40.47  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             cCchhhHHHHHHHHHHHHHHHHHHHHHHH-----hcccchHHHHHHhhHHHHHHHHHHh
Q 016515           46 VSHRGRWMVALSAFWTAGTIFEASLAWVV-----MTRLNWRWLLAFSSVPSFALLLFYG   99 (388)
Q Consensus        46 ~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~-----~~~~~WR~~f~~~~i~~l~~~~~~~   99 (388)
                      +|+|+..+.+...++.+|.++......+.     ....+|++++.+.++..++.++...
T Consensus         1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~   59 (267)
T PF07672_consen    1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI   59 (267)
T ss_pred             CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888888888999988765443322     1134699999888776655555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.73  E-value=0.089  Score=49.32  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhccCcch-hhHHHHHHhhcccCc---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhHHHH
Q 016515           17 VSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH---RGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF   92 (388)
Q Consensus        17 ~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~f~~~~i~~l   92 (388)
                      ..++++=++.++|.|+. |...++.+|..+++.   |...-..+..+..+|..++..+..++.++.+|.+-|.+.++..+
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            57899999999999987 888899999988763   44445566777888888877766666778999999999887766


Q ss_pred             HHHHHH
Q 016515           93 ALLLFY   98 (388)
Q Consensus        93 ~~~~~~   98 (388)
                      +.++..
T Consensus       114 ~~~~~f  119 (372)
T PF00854_consen  114 LALIVF  119 (372)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.71  E-value=0.43  Score=42.25  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=59.6

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhcccceeeeeccccccc-ch
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTVLLFGVRMCVTGTITVATIYAPEIYPT-SA  317 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~-~~  317 (388)
                      .+....+.+..|.+.||.|||+.++.+........+.......  ........+...+......+....+.+|.+|. +.
T Consensus        49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  128 (338)
T COG0477          49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE  128 (338)
T ss_pred             HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence            3444556688999999999997776665431221111122111  11111222211222223345567788999988 67


Q ss_pred             hhHHHHHHHH-HHhHhHhHHHHHHHHhhc
Q 016515          318 RTTGFGVASS-LGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       318 R~~~~~~~~~-~~~i~~~~~p~~~~~~~~  345 (388)
                      |+...+.... ...++..++|.+.+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477         129 RGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877 466677777755554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.18  E-value=0.29  Score=45.65  Aligned_cols=48  Identities=17%  Similarity=0.130  Sum_probs=40.4

Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchh
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  350 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~  350 (388)
                      +......+|..|++.|+++.++....--+|.+++..+.+.+.++++..
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            345578999999999999999999998888888888888888776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=93.77  E-value=0.25  Score=45.08  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=37.3

Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      +....+.+++.|++.+++..++...+..+|++++|.+...+..
T Consensus        29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~   71 (310)
T TIGR01272        29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL   71 (310)
T ss_pred             hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3456688889999999999999999999999999999887663

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.38  E-value=0.92  Score=43.65  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhc--hhHHHHHHHHHHH-HHHHH--Hhh-hc-hhHHHHHHHHHHHHhhhcccceeeeecc
Q 016515          238 FIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSAC-IFLLP--LVF-HQ-SAVVTTVLLFGVRMCVTGTITVATIYAP  310 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~g--Rr~~~~~~~~~~~-~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
                      ....++..++++..++-..|.+  ||+++. +.+++. ..++.  +.+ .+ ..++.++..+...++ .+..+..=.|.+
T Consensus        78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~-s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg-~~n~a~lR~Y~a  155 (488)
T KOG2325|consen   78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIV-SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG-VGNFAVLRAYIA  155 (488)
T ss_pred             HHHHHHHHhcchhhcccccccCCcccCHHH-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC-cccHHHHHHHHH
Confidence            3355666777888888888887  555554 444333 33333  222 22 112222222222111 122233446777


Q ss_pred             cccccchhhHHHHHHHHHHhHhHhHHH----HHHHHhhcc---------cc-hhHHHHHHHHHHHHHHHHhhccccccc
Q 016515          311 EIYPTSARTTGFGVASSLGKVGGMVCP----LVAVGLVTS---------CH-LRLAVILFEVVFVLAIASSLLFPFETM  375 (388)
Q Consensus       311 El~p~~~R~~~~~~~~~~~~i~~~~~p----~~~~~~~~~---------~~-~~~~~~i~~~~~~~~~~~~~~~~pet~  375 (388)
                      ...-.+.|.++.+......-+|..++|    .+.+. .+.         .+ ...+.++.+++.++..++..++..|-.
T Consensus       156 ~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L-g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  156 DASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL-GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             hccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh-cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            766667777777777664344444444    33321 111         01 124667788888888888888777743

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.25  E-value=11  Score=36.15  Aligned_cols=37  Identities=14%  Similarity=0.111  Sum_probs=26.5

Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHH
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLV  339 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~  339 (388)
                      +....+.++..+++.|-.+..+...+-.+|-.++..+
T Consensus       391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888999999888887777666655555543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.50  E-value=0.99  Score=36.43  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV   74 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~   74 (388)
                      +-|+.+.++.+-.+.|++.+.. .+...|+.|..+++.|++..+++-.....+.++|..+.+..
T Consensus        85 ~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   85 FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888999999999999875 45567999999999999988887777777777776665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=89.78  E-value=10  Score=35.07  Aligned_cols=127  Identities=13%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      +.++.++.-..+.+...+..|+|.++.+..+++...+-.+.=... ..............+......+.+...-|-||.+
T Consensus        53 TtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~  131 (395)
T COG2807          53 TTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR  131 (395)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc
Confidence            344444445556777888889998887776655433322110111 1111111111111222222234567788889887


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHH
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIA  365 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~~~~~i~~~~~~~~~~  365 (388)
                      . +..+|+....-.+++.+++.+..++.+.. +..+...+++..++++.+
T Consensus       132 ~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~  180 (395)
T COG2807         132 V-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL  180 (395)
T ss_pred             h-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            4 56677777777777777777776665554 344555666666666644

>PF12832 MFS_1_like: MFS_1 like family

Probab=89.48  E-value=5.5  Score=27.74  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHH
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  269 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~  269 (388)
                      ..+..+..+++..+.|.++||.+|++..+....
T Consensus        41 ~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   41 SAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            344455678899999999999999887765443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=89.46  E-value=22  Score=34.69  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=36.0

Q ss_pred             eeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          304 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       304 ~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      +.|.+++|.++.+...+-.++....+++|.+++..+..++..
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999988766655444

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=88.55  E-value=2.5  Score=39.73  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=65.8

Q ss_pred             CccHHHHHHHHHHhhccCcchhh-HHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHhhHH
Q 016515           13 SPNYVSLVIFRCFVGVGLGGVPV-FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-RLNWRWLLAFSSVP   90 (388)
Q Consensus        13 ~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-~~~WR~~f~~~~i~   90 (388)
                      ...-..+.++=.+.|++.|+..+ .=+|..+.+|+++-|+..+++...--.+..++|.+...+.+ ..+=|.-+....+.
T Consensus       338 ~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl  417 (438)
T COG2270         338 LEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL  417 (438)
T ss_pred             ccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            33334466677889999998754 44799999999999999999999999899999888666543 33466655554544


Q ss_pred             HHHHHHHHhcCCC
Q 016515           91 SFALLLFYGLAPE  103 (388)
Q Consensus        91 ~l~~~~~~~~~pE  103 (388)
                      ..+.++....+|+
T Consensus       418 l~iGl~~L~~v~~  430 (438)
T COG2270         418 LLIGLLLLLRVKV  430 (438)
T ss_pred             HHhhHhhEEeecC
Confidence            4455666666665

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=87.84  E-value=14  Score=34.97  Aligned_cols=122  Identities=17%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHH--HHHHHHHhhhcccceeeeecccccccchhhHHHHHH
Q 016515          248 LILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTV--LLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA  325 (388)
Q Consensus       248 ~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~  325 (388)
                      -+....+.|.+|-|++++...+...+....+.+..+.....+  +.++....   .-...+.|.--..|++.=-++++.+
T Consensus        58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a---~evay~sYiys~v~~~~yq~vts~~  134 (412)
T PF01770_consen   58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA---AEVAYYSYIYSVVDKEHYQKVTSYT  134 (412)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH---HHHHHHHHheeecCHHHHHHHHHHH
Confidence            345667889999999999887776666655555433221111  11111111   1112233443444666667778888


Q ss_pred             HHHHhHhHhHHHHHHHHhhcccchhHHH--HHHHHHHHHHHHHhhcccc
Q 016515          326 SSLGKVGGMVCPLVAVGLVTSCHLRLAV--ILFEVVFVLAIASSLLFPF  372 (388)
Q Consensus       326 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~p  372 (388)
                      ++..-+|.+++..+.-.+....+.+...  .+-.+...++.++.+++|+
T Consensus       135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7776665555554433333322222222  2222333455555555543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.73  E-value=24  Score=34.01  Aligned_cols=102  Identities=13%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515          235 VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ....+.+....+++++++-++|+.|.|..++++...-...-..+.+.+.. ...+.....+++....+.....|.+|..+
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y-~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSY-YLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchH-HHHHHHHHhhhhHHheecccceehhhcCC
Confidence            33444555667888999999999999999998877766666555555532 22222222222323335556679999999


Q ss_pred             cchhhHHHHHHHHHHhHhHhHHH
Q 016515          315 TSARTTGFGVASSLGKVGGMVCP  337 (388)
Q Consensus       315 ~~~R~~~~~~~~~~~~i~~~~~p  337 (388)
                      .+-+.+-.++.-+++..+-+++.
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Gg  155 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGG  155 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999998888776665554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=86.26  E-value=1.6  Score=41.13  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             cCccHHHHHHHHHHhhccCcchhh-HHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGVPV-FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV   74 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~   74 (388)
                      +.|+.+..++.-+..|+-.|...+ ....+.|-.|+++|-..++....+.+.|.+++..++..+
T Consensus       331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            468889999999999998777654 456678889999999999999999999999998887664

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=85.25  E-value=46  Score=33.87  Aligned_cols=78  Identities=13%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             HHHHHHHhhccCcch-hhHHHHHHhhcccCc---hhhHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHh
Q 016515           19 LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH---RGRWMVALSAFWTAGTIFEASLAWVVMT-------RLNWRWLLAFS   87 (388)
Q Consensus        19 l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-------~~~WR~~f~~~   87 (388)
                      ++++=.+..+|.|+. |...+...|..++++   |...-.++..+..+|.+++..+...+..       ..+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            556666677788876 777788888876543   4444555566667777777666555432       24699999988


Q ss_pred             hHHHHHHHH
Q 016515           88 SVPSFALLL   96 (388)
Q Consensus        88 ~i~~l~~~~   96 (388)
                      ++..++.++
T Consensus       168 ~i~m~ia~l  176 (654)
T TIGR00926       168 AILMILALI  176 (654)
T ss_pred             HHHHHHHHH
Confidence            777665433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=84.24  E-value=12  Score=36.33  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=17.0

Q ss_pred             HHHHHHHhchhHHHHH-HHHHHHHHHHHH
Q 016515          251 SAIIVDKIGRKLSMVL-MFVSACIFLLPL  278 (388)
Q Consensus       251 ~~~l~d~~gRr~~~~~-~~~~~~~~~~~~  278 (388)
                      =...+.|+|||+.+++ ...++++.++.+
T Consensus        60 Ds~y~~~~GRRKSWiiP~Q~l~g~~m~~l   88 (544)
T PF13000_consen   60 DSVYSKRIGRRKSWIIPIQYLSGILMLYL   88 (544)
T ss_pred             hhhcccccCCcchhhhHHHHHHHHHHHHH
Confidence            3445678999998765 334444444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=82.74  E-value=49  Score=32.22  Aligned_cols=42  Identities=14%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             eeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhc
Q 016515          304 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  345 (388)
Q Consensus       304 ~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~  345 (388)
                      ...++-+.+.+|.+-||-+.+-|.++++||-.-..+...+.|
T Consensus       425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            344566788899999999999999999998765545444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.10  E-value=0.36  Score=43.99  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=2.3

Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHH
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCP  337 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p  337 (388)
                      +....+.++..+++.|-.+..+...+-.+|-.++.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs  301 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS  301 (309)
T ss_dssp             HHHH-------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888888888888777666665544444444

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=80.09  E-value=18  Score=33.90  Aligned_cols=30  Identities=40%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             HHHHHHH-----HhchhHHHHH-HHHHHHHHHHHHh
Q 016515          250 LSAIIVD-----KIGRKLSMVL-MFVSACIFLLPLV  279 (388)
Q Consensus       250 ~~~~l~d-----~~gRr~~~~~-~~~~~~~~~~~~~  279 (388)
                      +...++|     |+|||+.+++ +..+.+.+++.+.
T Consensus        82 lWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs  117 (510)
T KOG3574|consen   82 LWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLS  117 (510)
T ss_pred             HHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHh
Confidence            4556777     9999997754 4445555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 117/307 (38%), Gaps = 65/307 (21%)
Query: 39  YFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV------------MTRLNWRWLLAF 86
           Y  E  P   RG+ +V+ + F     IF   L + V            +    WR++ A 
Sbjct: 150 YIAELAPAHIRGK-LVSFNQF---AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFAS 205
Query: 87  SSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKEN 146
             +P+   L+     PESPR+L ++ +   A  IL K+          G  ++ +A++E 
Sbjct: 206 ECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM---------GNTLATQAVQEI 256
Query: 147 EESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL--FFA-NVFSYYG 203
           +        H L   RK   +L        ++F   +I   ++L +   F   NV  YY 
Sbjct: 257 K--------HSLDHGRKTGGRL--------LMFGVGVIVIGVMLSIFQQFVGINVVLYYA 300
Query: 204 AVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS 263
             +              K L A  S D +L +   I  +  L   +L+ + VDK GRK  
Sbjct: 301 PEVF-------------KTLGA--STDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPL 344
Query: 264 MVLMFVSACI--FLLPLVFHQSA---VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 318
            ++  +   I  F L   F+  A   V    +LF V         V  +   EI+P + R
Sbjct: 345 QIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404
Query: 319 TTGFGVA 325
                +A
Sbjct: 405 GKALAIA 411

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 53/381 (13%), Positives = 108/381 (28%), Gaps = 64/381 (16%)

Query: 2   VTSVAGLLSSFSPNYVSLVIFRCFVGVGLG-GVPVFLAYFLEFVPVSHRGRWMVALSAFW 60
           V    G +   + +   + +     G   G G P      + +     RG  +   +   
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164

Query: 61  TAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFAL----LLFYGLAPESPRYLCAKARTV 115
             G      L  + M   N W   L   +  +  +           P+S      +    
Sbjct: 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224

Query: 116 DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSF 175
           D      + A    T     +              +L +  +  +            ++ 
Sbjct: 225 DYPDDYNEKAEQELTAKQIFM------------QYVLPNKLLWYIA----------IANV 262

Query: 176 FMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYV 235
           F+     L+R  +L W   +                         +V H    K +  Y 
Sbjct: 263 FV----YLLRYGILDWSPTYL-----------------------KEVKHFALDKSSWAYF 295

Query: 236 DVFIASLAELPGLILSAIIVDKI---GRKLSMVLM--FVSACIFLLPLVFHQSAVVTTVL 290
               A    +PG +L   + DK+    R  + V     V+    +  +    +  V  + 
Sbjct: 296 LYEYAG---IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352

Query: 291 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVC-PLVAVGLVTSCHL 349
           +  +   + G + +  ++A E+ P  A  T  G     G +GG V    +    V     
Sbjct: 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412

Query: 350 RLAVILFEVVFVLAIASSLLF 370
               ++     +LA+   ++ 
Sbjct: 413 DGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.77
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.72
2xut_A	524	Proton/peptide symporter family protein; transport	99.72
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.38
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.24
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.12
2xut_A	524	Proton/peptide symporter family protein; transport	99.03
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.8
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.57

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.1e-39  Score=310.83  Aligned_cols=337  Identities=18%  Similarity=0.259  Sum_probs=228.6

Q ss_pred             cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHH
Q 016515           12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--------RLNWRW   82 (388)
Q Consensus        12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~--------~~~WR~   82 (388)
                      +++|+++++++|+++|++.|+. +....|++|++|+++||+..++.+.++..|.++++.++.....        .++||+
T Consensus       122 ~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            5789999999999999999986 6778899999999999999999999999999999888776532        357999


Q ss_pred             HHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccc
Q 016515           83 LLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTR  162 (388)
Q Consensus        83 ~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
                      ++.+..+|+++.++.++++||||+||..|+|.||+++.+++....+..           +.+..+.++..++        
T Consensus       202 ~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~--------  262 (491)
T 4gc0_A          202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA-----------TQAVQEIKHSLDH--------  262 (491)
T ss_dssp             HHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH--------
T ss_pred             HhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh-----------HHHHHHHHHHHHh--------
Confidence            999999999999999999999999999999999999999887553210           0000000000000        


Q ss_pred             cccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHh
Q 016515          163 KITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL  242 (388)
Q Consensus       163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (388)
                           +++. ......++.+..  ....+...+.+...++....+.+.+...           .............+.++
T Consensus       263 -----~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          263 -----GRKT-GGRLLMFGVGVI--VIGVMLSIFQQFVGINVVLYYAPEVFKT-----------LGASTDIALLQTIIVGV  323 (491)
T ss_dssp             -----HHHH-TTHHHHSCCTHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------SSCCHHHHHHHHHHHHH
T ss_pred             -----hhhh-hhHHHHhcccHH--HHHHHHHHHHHHhhhhHHHhcchHHHHh-----------cCCCccchhhHHHHHHH
Confidence                 0000 011112222111  1111222222222222222222222100           00111222344566677


Q ss_pred             hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hchhHHHHHHH-HHHHHhhhcccceeeeecccccccch
Q 016515          243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      ..+++++++++++||+|||+.++.+..+..++++.+..    ........... +....+..+..++.|.+.+|+||+++
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~  403 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  403 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred             HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence            88999999999999999999988877766655444322    12222222222 22223334555678999999999999


Q ss_pred             hhHHHHHHHHHHhHhHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhh
Q 016515          318 RTTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI  386 (388)
Q Consensus       318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~  386 (388)
                      |+++.|+++++++++++++|++.+.+.+.      .+...++++++++++++.+++++++||||||++||+++--
T Consensus       404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f  478 (491)
T 4gc0_A          404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW  478 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence            99999999999999999999887765432      2234567889999999999999999999999999976543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=3e-24  Score=204.74  Aligned_cols=318  Identities=14%  Similarity=0.177  Sum_probs=200.6

Q ss_pred             hhhhhhhhhc----CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016515            3 TSVAGLLSSF----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR   77 (388)
Q Consensus         3 ~~i~~~l~~~----~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~   77 (388)
                      .+++.++.++    +++++.++++|+++|++.|.. +...+++.|++|+++|++..++.+.+..+|.++++.++..+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888    899999999999999998865 67788999999999999999999999999999999998877777


Q ss_pred             cc-hHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcc
Q 016515           78 LN-WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT  155 (388)
Q Consensus        78 ~~-WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (388)
                      .+ ||+.|++.+++.++. ++.++.+||+|+....+++.++              +       .+.  +++.+ +   + 
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-------~~~--~~~~~-~---~-  233 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------K-------NDY--PDDYN-E---K-  233 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------C-------CC---------------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------------c-------ccc--cccch-h---h-
Confidence            88 999999988877665 4456778999874211100000              0       000  00000 0   0 


Q ss_pred             ccccccccccccccccchh--hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh
Q 016515          156 HMLSMTRKITDKLKSGFSS--FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL  233 (388)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (388)
                                ++++.....  .+.+++++...   ...+..+...+.+++...+.+.+..+.         . ..+....
T Consensus       234 ----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-g~~~~~~  290 (451)
T 1pw4_A          234 ----------AEQELTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDWSPTYLKEV---------K-HFALDKS  290 (451)
T ss_dssp             ---------------CCTHHHHHHTSSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHBTTB---------S-CCCHHHH
T ss_pred             ----------hhcccccccchHHHHHcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh---------c-CCCHHHH
Confidence                      000000011  12233322211   122222223333333333333222110         0 0011112


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHh--chhHHHHHHHHHHH-HHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeee
Q 016515          234 YVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIY  308 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
                      .....+..++.+++.++.+++.||+  |||+.+..+..+.. +..+.+....  +.+......+...++..+..+..+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  370 (451)
T 1pw4_A          291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH  370 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            2234455667889999999999999  99998876665544 3333333221  22222223333333333444556788


Q ss_pred             cccccccchhhHHHHHHHHHHhH-hHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccc
Q 016515          309 APEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  371 (388)
Q Consensus       309 ~~El~p~~~R~~~~~~~~~~~~i-~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  371 (388)
                      ..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+++.+++.+++.++.++..
T Consensus       371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 9999999999888876666677777777777776666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.89  E-value=3.2e-21  Score=183.13  Aligned_cols=291  Identities=11%  Similarity=0.037  Sum_probs=182.5

Q ss_pred             hhhhhhhh---hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 016515            3 TSVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM-TR   77 (388)
Q Consensus         3 ~~i~~~l~---~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-~~   77 (388)
                      .+++.++.   +++++++.++++|+++|++.|.. +...+++.|+.|+++|++..+..+....+|.++++.++..+. ..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45667777   88999999999999999999875 677889999999999999999999999999999999987766 44


Q ss_pred             cc-------------------------hHHHHHHhhHHHHHHHHH--HhcCCCCchHHHhccChHHHHHHHHHHHHhcCC
Q 016515           78 LN-------------------------WRWLLAFSSVPSFALLLF--YGLAPESPRYLCAKARTVDAHRILEKMAFVNQT  130 (388)
Q Consensus        78 ~~-------------------------WR~~f~~~~i~~l~~~~~--~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~  130 (388)
                      .+                         ||+.|++.+++.++..+.  +...||+++.    .                  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~------------------  238 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N------------------  238 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C------------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c------------------
Confidence            43                         999998777665554333  3335666531    0                  


Q ss_pred             CCCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHH-H-HHHHHHHHH-H
Q 016515          131 KLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA-N-VFSYYGAVL-L  207 (388)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~  207 (388)
                      + ++.          ++                     +.....++++++++......+....... . .+..+...+ .
T Consensus       239 ~-~~~----------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (438)
T 3o7q_A          239 H-SDA----------KQ---------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV  286 (438)
T ss_dssp             C-CCS----------ST---------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccc----------cc---------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0 000          00                     0000122333433322222222221111 1 111122122 1


Q ss_pred             hhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHH
Q 016515          208 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVT  287 (388)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (388)
                      ...+.              .+ .........+..++.+++.++.+++.||+|||+.+..+..+..+..+.+........ 
T Consensus       287 ~~~~g--------------~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  350 (438)
T 3o7q_A          287 EEIPG--------------MT-AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-  350 (438)
T ss_dssp             HHSTT--------------CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             hccCC--------------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence            11110              01 111122234456677889999999999999999988877776665555444333322 


Q ss_pred             HHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHH
Q 016515          288 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA  365 (388)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  365 (388)
                      ....+...++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+.+++.++..+
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            22223333444455567788889999987 999999887 788999999999998888755 44455544444444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.87  E-value=9e-21  Score=182.89  Aligned_cols=346  Identities=9%  Similarity=-0.051  Sum_probs=179.4

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMVALSAFWTAGTIFEASLAWVVMTRLN   79 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~   79 (388)
                      ..++.++.++++|++.++++|+++|++.|.. +...+++.|++|+++  |+...+..+....+|..+++.++..+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4677788899999999999999999999875 677889999999998  7777888899999999999999988888889


Q ss_pred             hHHHHHHhhHHHHHHHHHHhc-----CCCCchHHHhccChHHHHHHHHH--------------HHHhcCCCCCCCccccc
Q 016515           80 WRWLLAFSSVPSFALLLFYGL-----APESPRYLCAKARTVDAHRILEK--------------MAFVNQTKLPPGILVSD  140 (388)
Q Consensus        80 WR~~f~~~~i~~l~~~~~~~~-----~pESp~~l~~~~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~  140 (388)
                      ||+.|++.++..++..+...+     .++.++--..+.+.++.++.+++              ....++.+.  +     
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~-----  247 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--P-----  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--T-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--c-----
Confidence            999999987765544333221     12111000011122233332222              111111100  0     


Q ss_pred             hhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhcCCCC
Q 016515          141 KAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY----GAVLLTSKLSSGDN  216 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  216 (388)
                      ........... ...... .. . ..+++..  ..  ..+++.. ....++...+.....+.    ....+.......  
T Consensus       248 ~~~~~~~~~~~-~~~~~~-~~-~-~~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  316 (491)
T 4aps_A          248 AYINLLTIVAI-AIPVFY-FA-W-MISSVKV--TS--TEHLRVV-SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS--  316 (491)
T ss_dssp             HHHHHHHHHHH-HHHHHH-HH-H-HC----------------CT-THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC--
T ss_pred             cchhhhhHHHH-HHHHHH-HH-H-Hhhcccc--cH--HHHHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc--
Confidence            00000000000 000000 00 0 0000000  00  0000000 01111111111111111    111111111100  


Q ss_pred             CCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHHHHHhhh---------c
Q 016515          217 KCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LMFVSACIFLLPLVFH---------Q  282 (388)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~-----~~~~~~~~~~~~~~~~---------~  282 (388)
                               .. .....  ......+..+++..+.+++.||+|||+...     .+..+.++..+.+...         .
T Consensus       317 ---------~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          317 ---------SW-FPVSW--FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             ---------SS-SCSGG--GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             ---------Cc-cCHHH--HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence                     00 01111  122345556777888999999999986443     3444433333332221         1


Q ss_pred             hhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 016515          283 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  362 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~  362 (388)
                      +.+......+...++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+. +....+.++++++++
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~  463 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVV  463 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence            2222222222222333334566788999999999999999999999999999999988766544 345567777778788


Q ss_pred             HHHHhhcccccccCcch
Q 016515          363 AIASSLLFPFETMGREL  379 (388)
Q Consensus       363 ~~~~~~~~~pet~~~~l  379 (388)
                      +.+..++..|+++++..
T Consensus       464 ~~~~~~~~~~~~~~~~~  480 (491)
T 4aps_A          464 LGIVLVFLSKRIQGLMQ  480 (491)
T ss_dssp             HHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77777777777765533

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.77  E-value=5e-19  Score=164.62  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515            3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR   81 (388)
Q Consensus         3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR   81 (388)
                      .+++.++.+++++++.+++.|+++|++.+.. +....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  154 (375)
T 2gfp_A           75 FMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR  154 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence            4567777888899999999999999998875 667789999999999999999999999999999999998887778999


Q ss_pred             HHHHHhhHHHHHHHH-HHhcCCCCch
Q 016515           82 WLLAFSSVPSFALLL-FYGLAPESPR  106 (388)
Q Consensus        82 ~~f~~~~i~~l~~~~-~~~~~pESp~  106 (388)
                      +.|++.++..++..+ ..+.+||+|+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          155 ACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            999988887766554 5566888764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.72  E-value=3.4e-17  Score=154.70  Aligned_cols=148  Identities=14%  Similarity=0.113  Sum_probs=99.4

Q ss_pred             HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515          238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  317 (388)
                      .+..+..+++.++.+++.||+|||+.+..+..+.++..+.+....+.+......+...++.....+..+.+.+|.+|++.
T Consensus       266 ~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~  345 (417)
T 2cfq_A          266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF  345 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            34455677889999999999999998877766655544444333332222111111111111222334679999999999


Q ss_pred             hhHHHHHH-HHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcch-hhhHHh
Q 016515          318 RTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL-KDTVDA  385 (388)
Q Consensus       318 R~~~~~~~-~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l-~~~~~~  385 (388)
                      |+++.++. +..+++|+.++|.+.+.+.+..+....+.+.+++++++.+..++..||++..++ ..+.+|
T Consensus       346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T 2cfq_A          346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNE  415 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSSSSSSTT
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhc
Confidence            99999996 677789999999999988776554556677777778887777777788775444 334444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.72  E-value=2.6e-17  Score=160.03  Aligned_cols=96  Identities=13%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             hhhhhhhhhcCc-cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHH---HHHHHHHHHHHHHHHHHHHhcc
Q 016515            3 TSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA---LSAFWTAGTIFEASLAWVVMTR   77 (388)
Q Consensus         3 ~~i~~~l~~~~~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~~~~~l~~~~~~~   77 (388)
                      ..++.++.++++ +++.++++|+++|++.|.. +...+++.|++|+++|++..+.   .+....+|..+++.++..+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  174 (524)
T 2xut_A           95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN  174 (524)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356677788888 9999999999999998875 6778899999999999877666   8888999999999888877777


Q ss_pred             cchHHHHHHhhHHHHHHHHHH
Q 016515           78 LNWRWLLAFSSVPSFALLLFY   98 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~~~~~   98 (388)
                      .+||+.|++.++..++..+..
T Consensus       175 ~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          175 FGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            899999999887766654443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.38  E-value=6.8e-12  Score=119.01  Aligned_cols=140  Identities=16%  Similarity=0.057  Sum_probs=102.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ..+..++..++.++.|++.||+|||+.++.+.++.++..+....    ..+.+......+...++.....+....+.+|.
T Consensus        68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  147 (451)
T 1pw4_A           68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  147 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            44556777889999999999999999998888777666555544    33433333333333344444456677899999


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      +|++.|+++.++.+....+|..++|.+.+.+.+..+ ....+++.+++.++..++.++..||+..
T Consensus       148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999999999999999999999998887666555 5556777777777766666666677543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.24  E-value=1.9e-10  Score=108.61  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=81.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      ......++..++.++.|++.||+|||+.++.+.++.++..+..   ....+.+......+...++.....+....+.+|.
T Consensus        66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  145 (438)
T 3o7q_A           66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence            3445566778899999999999999999998887776655554   3333333333333333344444445677899999


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  344 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~  344 (388)
                      +|++.|+++.++.+....+|..++|.+.+.+.
T Consensus       146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887776

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.15  E-value=3.7e-10  Score=108.41  Aligned_cols=134  Identities=12%  Similarity=0.091  Sum_probs=96.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  315 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  315 (388)
                      .....++..++.++.|+++|| +|||++++.+..+.++..+......+.+......+...++.....+....+.+|.+|+
T Consensus        60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            445566778899999999999 8999999988877766665555544433333333333344344456677899999999


Q ss_pred             ch--hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515          316 SA--RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  370 (388)
Q Consensus       316 ~~--R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  370 (388)
                      +.  |+++.++.+....+|..++|.+.+.+.+..+....+.+.++..+++.+...+.
T Consensus       140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            88  77788888899999999999999887776665566666666566555554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.12  E-value=2e-10  Score=106.22  Aligned_cols=141  Identities=16%  Similarity=0.027  Sum_probs=100.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....+...++.+..|++.||+|||+.++.+..+..+..+.....++.+......+...++.....+....+.+|.+|++
T Consensus        41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  120 (375)
T 2gfp_A           41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT  120 (375)
T ss_dssp             HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence            44556677888999999999999999988887776665555444333333333333333333334456678899999999


Q ss_pred             hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515          317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  377 (388)
Q Consensus       317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~  377 (388)
                      .|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus       121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            9999999999999999999999988776654444556666666666666566667887543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.03  E-value=3.2e-09  Score=102.80  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=93.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  314 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  314 (388)
                      ..+..++..++.++.|+++||+ |||++++.+.++.++..+...... +.+......+...++.....+....+.+|.+|
T Consensus        60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  139 (524)
T 2xut_A           60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD  139 (524)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence            3445666788899999999999 999999888777666555554443 33333333333333334445667789999999


Q ss_pred             cchhhHHHHH---HHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccc
Q 016515          315 TSARTTGFGV---ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  372 (388)
Q Consensus       315 ~~~R~~~~~~---~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p  372 (388)
                      ++.|+++.+.   .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..|
T Consensus       140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999877666   888889999999988887766555555666666666666555544333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.80  E-value=4.2e-08  Score=93.94  Aligned_cols=103  Identities=14%  Similarity=0.056  Sum_probs=74.2

Q ss_pred             HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh------------------hchhHHHHHHHHHHHHhhhccc
Q 016515          241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTVLLFGVRMCVTGTI  302 (388)
Q Consensus       241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  302 (388)
                      .++..+|+++.|++.||+|||+.++.+.++..+..+...+                  ..+.....+.-+...++..+..
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999998887766554443321                  1222333344455555555566


Q ss_pred             ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHh
Q 016515          303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  343 (388)
Q Consensus       303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~  343 (388)
                      +....+.+|..|++.|+...++......+|..+++.+....
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            77889999999999999999999888777777776655433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.57  E-value=5e-05  Score=71.01  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             hhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 016515            7 GLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-LSAFWTAGTIFEASLAWVVMTRLNWRWLL   84 (388)
Q Consensus         7 ~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~WR~~f   84 (388)
                      .++.+++++.+.+++..++.|++.+.. +....+..|..|++.||+..+. ++....+|..+++.++..+.+..+|+..|
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f  382 (417)
T 2cfq_A          303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             HHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence            345566778888888888888876543 4556789999999999998887 47778899999998888777777899999


Q ss_pred             HHhhHHHHHHHHH-HhcCCCCc
Q 016515           85 AFSSVPSFALLLF-YGLAPESP  105 (388)
Q Consensus        85 ~~~~i~~l~~~~~-~~~~pESp  105 (388)
                      .+.++..++..++ ....||.+
T Consensus       383 ~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          383 LVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHHHHHHHHhhhcCCC
Confidence            8888776665444 44466644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/359 (9%), Positives = 84/359 (23%), Gaps = 8/359 (2%)

Query: 23  RCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRW 82
           R F+  GL      + +       +     M  L                  M     + 
Sbjct: 89  RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK 148

Query: 83  LLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKA 142
                           G  P     L               +       +   +      
Sbjct: 149 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA----LYMPAFCAILVALFAFAMM 204

Query: 143 IKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY 202
               +   L       +      ++      +   +F + ++   LL ++          
Sbjct: 205 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 264

Query: 203 GAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL 262
              +L    +         +  +  +     Y  +    L          +     G   
Sbjct: 265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM---SDKVFRGNRGATG 321

Query: 263 SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGF 322
              +  V+    +  +    +  V  + +  +   + G + +  ++A E+ P  A  T  
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381

Query: 323 GVASSLGKVGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELK 380
           G     G +GG V    +    V         ++     +LA+   ++       R  +
Sbjct: 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.72
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.25
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.53

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.4e-23  Score=195.59  Aligned_cols=334  Identities=13%  Similarity=0.139  Sum_probs=193.2

Q ss_pred             hhhhhhhhcC----ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-c
Q 016515            4 SVAGLLSSFS----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-R   77 (388)
Q Consensus         4 ~i~~~l~~~~----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-~   77 (388)
                      +++.++.+++    ++++.++++|+++|++.|.. +....++.|++|+++||+..++.+.+..+|..+++.++..... .
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            4556666665    47789999999999998865 6777899999999999999999999999999999887766543 4


Q ss_pred             cchHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccc
Q 016515           78 LNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH  156 (388)
Q Consensus        78 ~~WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (388)
                      .+||+.|++.+++.++. ++.+.+++|+|+......+.+                           .+.++.++. .+  
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-~~--  229 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---------------------------YKNDYPDDY-NE--  229 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---------------------------TCCC----------
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh---------------------------hhhhcccch-hh--
Confidence            68999998888776655 445566788775321100000                           000000000 00  


Q ss_pred             cccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHH
Q 016515          157 MLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD  236 (388)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (388)
                            +.+++........+..++.+..   .......+......++...+.+....+..          ..+.......
T Consensus       230 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  290 (447)
T d1pw4a_         230 ------KAEQELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWA  290 (447)
T ss_dssp             ------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHH
T ss_pred             ------ccccccchhhHHHHHHHcCchH---HHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchhhhh
Confidence                  0000000011112222222211   11111122222222332222222211100          0011112233


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHH---HHHHhh--hchhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF---LLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPE  311 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  311 (388)
                      ..+..+..+++.++++++.||.+||...........+.   ......  ..+.+......+...+...+..+..+.+..|
T Consensus       291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  370 (447)
T d1pw4a_         291 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE  370 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677889999999999999876443333222221   111111  2222333333333334444445567788999


Q ss_pred             ccccchhhHHHHHHHHHHhHhH-hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhhh
Q 016515          312 IYPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  387 (388)
Q Consensus       312 l~p~~~R~~~~~~~~~~~~i~~-~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~  387 (388)
                      .+|++.|+++.|+.+.++++++ +++|.+.+.+.+..+....+.++.++.+++.++.+++. ..+.|..+|..+|++
T Consensus       371 ~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~e~~  446 (447)
T d1pw4a_         371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM-IGEKRRHEQLLQELV  446 (447)
T ss_dssp             TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGGSC
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HhccccHHHHHHhCC
Confidence            9999999999999999998855 56788888888877766667777777777766666554 334455566666653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.3e-16  Score=142.92  Aligned_cols=145  Identities=14%  Similarity=0.091  Sum_probs=106.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  316 (388)
                      .....+...++..+.+++.||.|||+.+..+..+.++..+.+....+.+......+...++.....+....+..|.+|++
T Consensus       265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  344 (417)
T d1pv7a_         265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR  344 (417)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             ccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence            34445566778888999999999999998887777776666555444443333333333333444566778899999999


Q ss_pred             hhhHHHHHHHHH-HhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515          317 ARTTGFGVASSL-GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD  381 (388)
Q Consensus       317 ~R~~~~~~~~~~-~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~  381 (388)
                      .|+++.|+.+++ ..+|+.++|.+.+.+.+..+....+++.+++.+++.++..+..++++..++++
T Consensus       345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            999999997765 45899999999999888777677788888888888777777777766665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.4e-11  Score=110.12  Aligned_cols=138  Identities=16%  Similarity=0.060  Sum_probs=94.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  312 (388)
                      .....++..++.++.|+++||+|||+++..+.++.++..+.....    .+.....+..+...++.....+....+.+|.
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  144 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  144 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            445567778899999999999999999988887766655544321    2222223333333333334455667899999


Q ss_pred             cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHhhcccccc
Q 016515          313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET  374 (388)
Q Consensus       313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~pet  374 (388)
                      +|++.|+++.++.+....+|+.++|.+........ +....+++.+.+.++..++.++.++|+
T Consensus       145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            99999999999999999999999988776555433 233445556666666656666555554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=8.1e-07  Score=79.67  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH----hhhcccceeeeecccc
Q 016515          237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM----CVTGTITVATIYAPEI  312 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~El  312 (388)
                      ..+..+...++.++.|+++||+|||+.++.+..+..+..................+....    ..............+.
T Consensus        49 ~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (417)
T d1pv7a_          49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF  128 (417)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhccccc
Confidence            344566678889999999999999999887766655544443332211111111111111    1111111111111222


Q ss_pred             cc--cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515          313 YP--TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  376 (388)
Q Consensus       313 ~p--~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~  376 (388)
                      .+  .+.+..+.+........+..++|.+.+.+.+.. ....+........+..+...+..||+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             ccchhhhhHHHHHHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHHHhccccc
Confidence            22  223444556666666677777887776655543 3334444555555555555555566543