Citrus Sinensis ID: 016518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccccEEEEEccccccccHHHHHHccccccEEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccHHHHHHHHHccccccccccccEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEccccEEEcccccccccEEEEccccccccHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccHHcccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHcHHccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEEcccccccccccEEEEEEEEEEcccEEEccccccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccHcccccccccccccccccccEEEEEEEEEEEccccccEEEcccccHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcc
Coil and Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgiKKKLLkngvdwdtpefgdevTIHYVGtlldgtkfdstrdrydpltfklgtgqvatgldngiitMKKRECAVftftlpselrfgvegrdslppnsvvQFEVELVSWITVVDLSKDGGIVKKILEkgerdaspgdldEVLVKYQVMLGdgtmvaktpEEGVEFYLKDVSYIarledgtvfekkgydgeqplefitDEEQVIAGLDRVAATMKKEEWAIVTINHeygfgnveakrdlatipsCAKLYYEVEMMDFIKEkvpwemnnqgkieaagrkkeegnllfkngkyeragkkynkaadcvsedgsfvddEQKLVKSLRVSCWLNSAACCLKlkdyqgirl
Flexible Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgikkkllkngvDWDTPEFGDEVTIHYVgtlldgtkfdsTRDRYDPltfklgtgqvatgldnGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITvvdlskdggivkkilekgerdaspgdldEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEygfgnveakrdlATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKieaagrkkeegnlLFKNGKYERAGKKYNKaadcvsedgsfvddEQKLVKSLRvscwlnsaacclklkdyqgirl
Low Complexity Region (SEG)
MACESVMTLEKGANLSdidgeeeepgevieSAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL
Disordered region (IsUnstruct)
***********************************************IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEK********DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN****************LLFKNGKY*****KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ****
Disordered Region (DISOPRED)
*A****************************************LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMV**TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK***ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS**********SLRVSCWLNSAACCLKLKDY****L
Disordered Region (DISEMBL)
*********EKGANLSDI**********IESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL
Disordered Region (DISPRO)
*************************************GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q9FJL3	578	Peptidyl-prolyl cis-trans	yes	no	0.793	0.532	0.411	7e-63
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.788	0.547	0.413	4e-62
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.791	0.557	0.394	1e-59
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.786	0.665	0.351	9e-40
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.786	0.665	0.348	1e-39
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.847	0.716	0.329	1e-39
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.780	0.660	0.342	3e-39
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.780	0.663	0.332	2e-37
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.780	0.664	0.323	3e-37
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.780	0.663	0.329	4e-37

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 206/350 (58%), Gaps = 42/350 (12%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
           G+ G+ KK++  G  W+ P+  DEV + Y   L DGT    +    D + F +  G    
Sbjct: 160 GDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKS----DGVEFTVKEGHFCP 215

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-------LPPNSVVQFEVELVSWITV 156
            L   + TMK+ E  + T  +  +  FG  GR +       +PPN+ +Q ++ELVSW TV
Sbjct: 216 ALSKAVKTMKRGEKVLLT--VKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTV 273

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+++ D  ++KKIL++GE                          + P EG    LK    
Sbjct: 274 VEVTDDRKVIKKILKEGEG------------------------YERPNEGAIVKLK---L 306

Query: 217 IARLEDGT-VFEKKGYD-GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
           I +L+DGT VF KKG++  E+P EF  DEEQVI GL++    MKK E A++TI+ EY FG
Sbjct: 307 IGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFG 366

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K++LA IP  + +YYEVE++ FIKEK  W+MN Q +IEAAG+KKEEGN+LFK GKY
Sbjct: 367 SSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKY 426

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            RA K+Y +    +  D +F ++E+K  K L+++C LN AAC LKLKDY+
Sbjct: 427 ARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYK 476

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 143/346 (41%), Positives = 200/346 (57%), Gaps = 40/346 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G +   
Sbjct: 156 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT----VVSKSEGVEFTVKDGHLCPA 211

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  +    +  +  FG  GR +      +PPN+ +  ++ELVSW TV +
Sbjct: 212 LAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 269

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +              G +V              V    
Sbjct: 270 IGDDKKILKKVLKEXEGYERPNE--------------GAVVT-------------VKITG 302

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 303 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 362

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D A +P  + + YEVE++ F+K+K  W++NN  KIEAAG KKEEGN LFK+GKY RA 
Sbjct: 363 KQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYARAS 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           K+Y KAA  +  D SF +DE+K  K L+++C LN+AAC LKLKDY+
Sbjct: 422 KRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYK 467

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 201/347 (57%), Gaps = 40/347 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L  G  W+ P+  DEV + +   L DGT       + D + F +  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGT----VVGKSDGVEFTVKDGHFCPA 208

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  + T  +  +  FG +G+ +      +PPN+ ++  +ELVSW TV +
Sbjct: 209 LTKAVKTMKKGEKVLLT--VKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSE 266

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  +VKK+L++G+    P +              G +V              V  I 
Sbjct: 267 VTDDNKVVKKVLKEGDGYERPNE--------------GAVVK-------------VKLIG 299

Query: 219 RLEDGTVFEKKGY-DGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+ + E+P EF TDEEQV+ GLDR    MKK E A+VTI+ EY FG+ E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           ++++LA +P  + + YEV+++ F KE+  W+MN + KIEAA +KKEEGN  FK GKY  A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            K+Y KA   +  D SF ++E+K  K+L+V+C LN AAC LKLKDY+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYK 466

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 170/344 (49%), Gaps = 39/344 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P D              G MV    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYHKDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEM++  K+E +   KE G   FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSA 337

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 170/344 (49%), Gaps = 39/344 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +T   GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKD- 162
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++D 
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEDE 146

Query: 163 -GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
            GGI+++I  +GE  A P D              G MV    E  +E Y  D  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYYNDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVHLKSFEKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSA 337

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 188/376 (50%), Gaps = 47/376 (12%)

Query: 18  IDGEEEEPGEVIESAAPLKVGEERGLGNS-----GIKKKLLKNGVDWDTPEFGDEVTIHY 72
           +  EE +  E    +APL++    G+  S     G+ K + + G   +TP  GD V +HY
Sbjct: 1   MTAEETKAAESGAQSAPLRL---EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHY 57

Query: 73  VGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGV 132
            G LLDGTKFDS+ DR D  +F LG G+V    D  + TMK  E  V   T   E  +G+
Sbjct: 58  TGWLLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGE--VCHITCKPEYAYGL 115

Query: 133 EGRD-SLPPNSVVQFEVELVSWITVVDLSK--DGGIVKKILEKGERDASPGDLDEVLVKY 189
            G    +PPN+ + FEVEL  +    DL++  DGGI+++I  +GE  A P +        
Sbjct: 116 AGSPPKIPPNATLVFEVELFEF-KGEDLTEEEDGGIIRRIRTRGEGYAKPNE-------- 166

Query: 190 QVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249
                 G +V    E  +E Y KD  +  R     V E +  D             +  G
Sbjct: 167 ------GALV----EVALEGYFKDQVFDRRELRFEVGEGESMD-------------LPCG 203

Query: 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM 309
           L++    M+K E +IV +   Y FG+  A ++   IP  A+L YE+ +  F K K  WEM
Sbjct: 204 LEKAIQRMEKGEHSIVYLKPRYAFGS--AGKEKFQIPPNAELKYEIHLKSFEKAKESWEM 261

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
           +++ K+E +   KE G + FK GKY++A  +Y K    +  + SF D++ +  ++LR++ 
Sbjct: 262 SSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLAS 321

Query: 370 WLNSAACCLKLKDYQG 385
            LN A C LKL+ +  
Sbjct: 322 HLNLAMCHLKLQAFSA 337

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 173/342 (50%), Gaps = 39/342 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P +              G +V    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 189 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 233

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 234 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
            K    +  + SF ++E +  ++LR++  LN A C LKL+ +
Sbjct: 294 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 335

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 172/340 (50%), Gaps = 37/340 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+++    DL +DG
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDG 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KEEG + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
               +  +    + E K  +S  ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 167/340 (49%), Gaps = 37/340 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P FGD+V +HY G L DG KFDS+ DR  P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +D 
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGSAGHLQKIPSNATLFFEIELLDF-KGEDLFEDS 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G++++I  KGE  ++P +   V V  +   G           G  F  +DV ++      
Sbjct: 147 GVIRRIKRKGEGYSNPNEGATVKVHLEGCCG-----------GRTFDCRDVVFVV----- 190

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                +G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 191 ----GEGEDHDIPI-----------GIDKALVKMQREEQCILYLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+  A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIDPNAELMYEVTLKSFEKAKESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
               +  +    + E K  +S  ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 171/340 (50%), Gaps = 37/340 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 90  WDIGVATMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEIELLDF-KGEDLLEDG 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G L FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
               +  +    + E K  +S  ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
255538020	598	peptidylprolyl isomerase, putative [Rici	0.798	0.518	0.510	2e-84
224067192	573	predicted protein [Populus trichocarpa]	0.798	0.541	0.504	4e-81
356552270	582	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.798	0.532	0.481	2e-74
225458880	600	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.659	0.426	0.5	6e-74
357437549	609	70 kDa peptidyl-prolyl isomerase [Medica	0.791	0.504	0.465	2e-73
356564113	583	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.798	0.531	0.469	5e-73
297840663	584	hypothetical protein ARALYDRAFT_338459 [	0.793	0.527	0.473	1e-72
255589766	574	peptidylprolyl isomerase, putative [Rici	0.791	0.534	0.429	2e-65
414869595	559	TPA: hypothetical protein ZEAMMB73_59337	0.793	0.550	0.425	3e-65
414869596	492	TPA: hypothetical protein ZEAMMB73_59337	0.793	0.626	0.425	3e-65

>gi|255538020|ref|XP_002510075.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223550776|gb|EEF52262.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/347 (51%), Positives = 229/347 (65%), Gaps = 37/347 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI K++++     + P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 153 DGGIVKRIIEKPEKIERPGDLDEVLVKYEVKLADGTIVAKTPE--EGIEFHVKDGHLCPA 210

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   ++TM+  E       +  +  FG EG+D+      +PPNSV+  ++EL+S+  VVD
Sbjct: 211 LPKAVMTMRGGEKV--KLIVHPQYAFGEEGKDANDGILPVPPNSVLNMDLELISFKPVVD 268

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     GT VA       E  L  +SY A
Sbjct: 269 VTGDTKVFKKILKEGE---------------------GTNVAN------EGALVTISYTA 301

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RL+DGT+FEK+G DGEQPL+F+TDEEQVIAGLDR AATMKK E A++TIN EYGFG+VE 
Sbjct: 302 RLQDGTIFEKRGLDGEQPLQFVTDEEQVIAGLDRAAATMKKGERAVLTINPEYGFGSVEV 361

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D ATIP  + L YE+EM+DFIKEK PWEMNN+ KIEAAGRKKEEGNLLFK+GK++RAG
Sbjct: 362 KQDHATIPPSSVLVYEIEMLDFIKEKTPWEMNNKEKIEAAGRKKEEGNLLFKSGKFQRAG 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           KKY+KAAD + E+ SF DDEQKL+KSLRVSCWLN AAC LKL D+QG
Sbjct: 422 KKYDKAADYIVEEVSFDDDEQKLIKSLRVSCWLNGAACSLKLGDFQG 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067192|ref|XP_002302401.1| predicted protein [Populus trichocarpa] gi|222844127|gb|EEE81674.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/347 (50%), Positives = 220/347 (63%), Gaps = 37/347 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G   D P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 157 DGGIIKKIVEKGDKHDRPGDLDEVLVKYQVALADGTIVAKTLE--EGIEFYVKDGHLCPA 214

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L    +TMK+ E       +  +  FG EG+D+      +PPNS +  ++EL S+  V+D
Sbjct: 215 LPKATMTMKRGEKV--KLVVQPQYAFGQEGKDASDAICPVPPNSTLYIDLELTSFKPVID 272

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     G++VA    EG       +SY A
Sbjct: 273 VTGDAKVFKKILKEGE---------------------GSLVAN---EGATVT---ISYTA 305

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RLEDGTVFE+KG D  QPL+FITDEEQVIAGLDR  ATMKK E+AI+T+  EYGFGNVE 
Sbjct: 306 RLEDGTVFERKGIDDGQPLQFITDEEQVIAGLDRAVATMKKGEYAILTVKPEYGFGNVET 365

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           KRDLA +P  + L YEVEM DFIKEK PWEMNNQ KI+AA RKKEEGNLLFK+GKY RAG
Sbjct: 366 KRDLAIVPPSSILVYEVEMSDFIKEKTPWEMNNQEKIKAAERKKEEGNLLFKSGKYLRAG 425

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           KKY+KAA  V E+  F DDEQKLV ++RV+CWLN AAC LKL D+QG
Sbjct: 426 KKYDKAASYVGEEEVFGDDEQKLVTAMRVTCWLNKAACSLKLNDFQG 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552270|ref|XP_003544491.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/347 (48%), Positives = 213/347 (61%), Gaps = 37/347 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+++ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 148 DGGVVKKIMEKGSGNERPGDLDEVLVKYQVVLDDGTVVVETPE--GGVEFHVKDGHLFPI 205

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     +  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 206 LPKVIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 263

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                     G   A    EG       V + A
Sbjct: 264 VTGDSKVIKKILKEGE---------------------GVFTAN---EGANVT---VRFTA 296

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G    QPLEFITDEEQVI GLDR  ATMKK E AIV+I+ +Y FGNVE 
Sbjct: 297 MLEDGTVFEKRGIGETQPLEFITDEEQVITGLDRAVATMKKGERAIVSIHPDYAFGNVEV 356

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P  A + Y+VEMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 357 RRDLAIVPPGATVVYDVEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKGGNYQRAG 416

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           KKY KAAD V EDGSF DDEQK  ++LRVSCWLN AAC LKL D+ G
Sbjct: 417 KKYEKAADFVEEDGSFGDDEQKQAQTLRVSCWLNGAACSLKLNDFPG 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458880|ref|XP_002283423.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|302142176|emb|CBI19379.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 145/290 (50%), Positives = 192/290 (66%), Gaps = 34/290 (11%)

Query: 13  ANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHY 72
           + L ++D  +EEPGEVIESA PL VG+ER L NSG+KK+LL  G+ W+TP+FGDEVT+HY
Sbjct: 11  SQLGEVDDLDEEPGEVIESAPPLCVGQERELNNSGLKKRLLHKGIGWETPDFGDEVTVHY 70

Query: 73  VGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGV 132
           VGTLLDG  FDSTRDR +P TF LG G+V  GLD GI+TM + E A+  FT+P  L +G 
Sbjct: 71  VGTLLDGGTFDSTRDRNEPSTFTLGRGEVVDGLDQGIVTMTQEEIAL--FTVPPHLGYGE 128

Query: 133 EGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVM 192
            GR  +PPNSVVQF+V+L+SWITVVD+ +DGGI+KKILEKG R+  PGDLDE+LVKY+V 
Sbjct: 129 AGRQGVPPNSVVQFQVQLISWITVVDVCRDGGIIKKILEKGNRNVQPGDLDELLVKYKVK 188

Query: 193 LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDR 252
           L D T+VA+TPEEG+EFY+KD                               Q  + + +
Sbjct: 189 LVDDTIVAQTPEEGIEFYMKD------------------------------GQFCSAMPK 218

Query: 253 VAATMKKEEWAIVTINHEYGFGNV--EAKRDLATIPSCAKLYYEVEMMDF 300
              TMK  E   + +  +Y FG+V  +A+ +   IP  + L  ++E++ F
Sbjct: 219 AIKTMKSGEKVKLIVQPQYAFGDVGRDAENEFPLIPPSSVLIIDLELVSF 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437549|ref|XP_003589050.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355478098|gb|AES59301.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/344 (46%), Positives = 213/344 (61%), Gaps = 37/344 (10%)

Query: 48  IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDN 107
           I KK+++ G   D P   DEV + Y   L  GT    T +    + F +  G +   L  
Sbjct: 151 IIKKIMEKGKGNDRPGDLDEVLVKYQVALEAGTVVAETPE--GGVEFYVNDGHLLPRLPK 208

Query: 108 GIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSK 161
            I+TM + E A     +  +  FG +GR+      S+PP+S++   +ELVS+  V++++ 
Sbjct: 209 VIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGFRSIPPDSMLYINIELVSFKPVINVTG 266

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  ++KKI ++GE   +  +   V V+Y  M                           LE
Sbjct: 267 DFTVIKKIFKEGEGAFTANEGANVTVRYTAM---------------------------LE 299

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DGTVFEK+G D  QPL+F+TDEEQVI GLDR  ATMKK E AI++I+ +Y FGNVE K+D
Sbjct: 300 DGTVFEKRGIDETQPLKFVTDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVKQD 359

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
           LA +P  +K+ Y++EM+DFIKEK PWE+N+  KI+ A RKKEEGNLLFK+GKY+RA KKY
Sbjct: 360 LAIVPPGSKVVYDIEMVDFIKEKAPWELNSNEKIKVAERKKEEGNLLFKSGKYQRAAKKY 419

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           +KAAD VS DGS  DDE+KL KSLRVSCWLN AACCLKL D+ G
Sbjct: 420 DKAADFVSRDGSLGDDEEKLAKSLRVSCWLNGAACCLKLNDFPG 463

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564113|ref|XP_003550301.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 163/347 (46%), Positives = 213/347 (61%), Gaps = 37/347 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L+ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 149 DGGVVKKILEKGSGIERPGDLDEVLVKYRVVLGDGTVVVETLE--GGVEFHMKDGHLFPI 206

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     L  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 207 LPKVIMTMTRGEKA--ELILQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 264

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                         A T  EG       VS+ A
Sbjct: 265 VTGDSKVIKKILKEGEG------------------------AFTANEGANVT---VSFTA 297

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G     PLEFITDEEQVI GLDR  ATMKK E AI++I+ +Y FG+VE 
Sbjct: 298 MLEDGTVFEKRGIGETLPLEFITDEEQVITGLDRAVATMKKGERAIISIHPDYAFGDVEV 357

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RD+A +P  + + Y++EMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 358 RRDIAIVPPGSNVVYDIEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKVGNYQRAG 417

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           KKY KAAD V EDGSF  DEQK  ++L+VSCWLNSAAC LKL D+ G
Sbjct: 418 KKYEKAADFVDEDGSFGFDEQKQAQTLKVSCWLNSAACSLKLNDFPG 464

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840663|ref|XP_002888213.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata] gi|297334054|gb|EFH64472.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/346 (47%), Positives = 213/346 (61%), Gaps = 38/346 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G     P   DEV + Y   LLD T    + D+   + F +  G +   
Sbjct: 162 DGGIIKKIIEKGDKNGKPSDLDEVLVKYQVELLDSTIVAKSPDQ--GIQFCVNDGHLCPA 219

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   I++M   E       +  +  FG EGR S      +PPNSV+  +V LVS+  V+D
Sbjct: 220 LPLAIVSMHPGEKV--KLIVQPQYGFGEEGRSSSGIINAVPPNSVLNIDVLLVSYKPVID 277

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  + KKIL  GE  +S  D             DG  V              VSY+A
Sbjct: 278 VVGDSKVFKKILRDGE-GSSVAD-------------DGATVT-------------VSYVA 310

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +LEDGT+FE+K    E+PL F+TDEEQVI GLD+ AATMKK E A++ I+ EYGFGNVE 
Sbjct: 311 KLEDGTIFERKEVGEEEPLVFVTDEEQVITGLDKAAATMKKGEKAVLKISPEYGFGNVEV 370

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P C+ L YEVEM+DF+KEK P EMNN+ KIEAA RKKEEGNLL+KN KY+RA 
Sbjct: 371 QRDLAKVPQCSTLIYEVEMLDFVKEKTPREMNNEEKIEAANRKKEEGNLLYKNQKYQRAA 430

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           KKYNKAAD + E G F  DE+K +K+LRVSC+LN+AAC LKLK+++
Sbjct: 431 KKYNKAADFI-ETGKFEGDEEKQLKALRVSCFLNAAACSLKLKNFR 475

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 209/347 (60%), Gaps = 40/347 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+L  G  W+ P+  DEV +++   L DGT       + D + F +  G     
Sbjct: 154 DGGIFKKILVEGEKWENPKDLDEVLVNFEAQLEDGT----VVAKSDGVEFAVKEGHFCPA 209

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK+E  + T  +  +  FG +G+ +      +PPN+ +Q  +ELVSW TV +
Sbjct: 210 LAKAVKTMKKKEKVLLT--VKPQYGFGEKGKPASNGEGAVPPNATLQITLELVSWKTVSE 267

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE    P D              G++V              +  I 
Sbjct: 268 VTDDKKVMKKILKEGEGYERPND--------------GSLVK-------------LKLIG 300

Query: 219 RLEDGTVFEKKGYDGEQPL-EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+D E+ L EF TDEEQVI GLDR    MKK E A+VTI  EY FG  E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           +K++LA IP  + +YYEVE++ F+KEK  W+MN Q KIEAAG+KKEEGN+LFK GKY RA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            K+Y KA   +  D SF ++E+K  K+L+V+C LN+AAC L+LK+Y+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYK 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869595|tpg|DAA48152.1| TPA: hypothetical protein ZEAMMB73_593378 [Zea mays]

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 209/350 (59%), Gaps = 42/350 (12%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFT----LPSELRFGVEGRDS------LPPNSVVQFEVELVSWI 154
           L   + TMKK E  + T      +P +  FG +GR +      +PPN+ +  ++EL+SW 
Sbjct: 214 LAKAVKTMKKAEKVLLTVKPQCEIPFQNGFGEKGRPAAGEEGAVPPNASLLIDLELISWK 273

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           TV ++  D  I+KK+L++GE    P +              G +V             +V
Sbjct: 274 TVTEIGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EV 306

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             I +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG
Sbjct: 307 KIIGKLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFG 365

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY
Sbjct: 366 STESKQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKY 425

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            RA K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+
Sbjct: 426 ARASKRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYK 475

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869596|tpg|DAA48153.1| TPA: hypothetical protein ZEAMMB73_593378 [Zea mays]

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 209/350 (59%), Gaps = 42/350 (12%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFT----LPSELRFGVEGRDS------LPPNSVVQFEVELVSWI 154
           L   + TMKK E  + T      +P +  FG +GR +      +PPN+ +  ++EL+SW 
Sbjct: 214 LAKAVKTMKKAEKVLLTVKPQCEIPFQNGFGEKGRPAAGEEGAVPPNASLLIDLELISWK 273

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           TV ++  D  I+KK+L++GE    P +              G +V             +V
Sbjct: 274 TVTEIGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EV 306

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             I +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG
Sbjct: 307 KIIGKLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFG 365

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY
Sbjct: 366 STESKQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKY 425

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            RA K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+
Sbjct: 426 ARASKRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYK 475

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.5	0.284	0.517	6e-97
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.505	0.335	0.532	1.1e-50
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.494	0.331	0.538	5.8e-50
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.505	0.339	0.522	1.8e-48
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.5	0.345	0.54	4.7e-48
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.451	0.307	0.391	6.9e-45
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.399	0.350	0.366	8.6e-43
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.399	0.334	0.366	1.3e-42
ZFIN|ZDB-GENE-030131-514	450	fkbp4 "FK506 binding protein 4	0.345	0.297	0.4	6.4e-41
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.342	0.290	0.411	1.6e-39

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 511 (184.9 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
 Identities = 103/199 (51%), Positives = 138/199 (69%)

Query:    32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDP 91
             AA ++VGEE+ +G  G++KKL+K G  W+ P+ GDEV +HY GTLLDGTKFDS+RDR  P
Sbjct:    80 AAEMEVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAP 139

Query:    92 LTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVEL 150
               F LG GQV  G D GI TMKK E A+FT  +P EL +G +G    +PPN+ +QF+VEL
Sbjct:   140 FKFTLGQGQVIKGWDLGIKTMKKGENAIFT--IPPELAYGEDGSPPVIPPNATLQFDVEL 197

Query:   151 VSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFY 210
             +SW +V D+ KDGGI+KK+L +G +  +P D DEV VKY+V L DGT+VA++  +GVEF 
Sbjct:   198 ISWESVKDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAES--DGVEFT 255

Query:   211 LKDVSYIARLEDGTVFEKK 229
             +KD  +   +       KK
Sbjct:   256 VKDGHFCPAISKAVKTMKK 274

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 107/201 (53%), Positives = 138/201 (68%)

Query:    31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYD 90
             S   +KVGEE+ +G  G++K+LLK G  WD PE GDEV +HY GTLLDGTKFDS+RDR  
Sbjct:    34 SPVAMKVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGT 93

Query:    91 PLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVE 149
             P  F LG G+V  G D GI TMKK E AVFT  +P EL +G  G   ++PPN+ ++F+VE
Sbjct:    94 PFKFSLGQGEVIKGWDEGIKTMKKGEQAVFT--VPPELAYGEAGSPPAIPPNATLRFDVE 151

Query:   150 LVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEF 209
             L+SW +V D+ KDGGI KK+L +G +  +P DLDEVLVKY+  L DGT+V+K+  +GVEF
Sbjct:   152 LLSWASVKDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKS--DGVEF 209

Query:   210 YLKDVSYIARLEDGTVFEKKG 230
              +KD  +   L       KKG
Sbjct:   210 AVKDGYFCPALSKAVKTMKKG 230

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 106/197 (53%), Positives = 137/197 (69%)

Query:    34 PLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
             PLKVGEE+ +G  G++KKLLK G  W+TPE GDEV +HY GTLLDG KFDS+RDR  P  
Sbjct:    33 PLKVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFK 92

Query:    94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVS 152
             FKLG GQV  G D GI TMKK E AVFT  +P +L +G  G   ++P ++ +QF+VEL+S
Sbjct:    93 FKLGQGQVIKGWDLGIKTMKKGENAVFT--IPPDLAYGESGSPPTIPASATLQFDVELLS 150

Query:   153 WITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLK 212
             W +V D+ +DGGI KKIL++GE+  +P DLDEV VKY+  L DGT+++K+  EG EF +K
Sbjct:   151 WTSVKDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKS--EGAEFTVK 208

Query:   213 DVSYIARLEDGTVFEKK 229
             D  +   L       KK
Sbjct:   209 DGFFCPALAKAVKTMKK 225

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 105/201 (52%), Positives = 135/201 (67%)

Query:    31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYD 90
             SA  LK+GEE  +G SG+KKKL+K    WDTPE GDEV +HY GTLLDGTKFDS+RDR  
Sbjct:    31 SAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGT 90

Query:    91 PLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVE 149
             P  F LG G V  G D GI TMKK E A+FT  +P EL +G  G   ++PPN+ +QF+VE
Sbjct:    91 PFKFTLGQGHVIKGWDLGIKTMKKGENAIFT--IPPELAYGETGSPPTIPPNATLQFDVE 148

Query:   150 LVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEF 209
             L++W +V D+  DGG+ KKI+ +GE+   P DLDEV VKY+  L DGT+V K+  +GVEF
Sbjct:   149 LIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKS--DGVEF 206

Query:   210 YLKDVSYIARLEDGTVFEKKG 230
              +K+  +   L       K+G
Sbjct:   207 TVKEGHFCPALSKAVKTMKRG 227

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 108/200 (54%), Positives = 137/200 (68%)

Query:    32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDP 91
             A+ LKVGEE+ +   G+KKKLLK G  ++TPE GDEV +HY GTLLDGTKFDS+RDR  P
Sbjct:    25 ASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATP 83

Query:    92 LTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVEL 150
               F LG GQV  G D GI TMKK E AVFT  +P+EL +G  G   ++P N+ +QF+VEL
Sbjct:    84 FKFTLGQGQVIKGWDIGIKTMKKGENAVFT--IPAELAYGESGSPPTIPANATLQFDVEL 141

Query:   151 VSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFY 210
             + W +V D+ KDGG+ KKIL  GE+  +P DLDEVLVK++  L DGT+V K+  +GVEF 
Sbjct:   142 LKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKS--DGVEFT 199

Query:   211 LKDVSYIARLEDGTVFEKKG 230
             +KD  +   L       KKG
Sbjct:   200 VKDGHFCPALTKAVKTMKKG 219

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 312 (114.9 bits), Expect = 6.9e-45, Sum P(2) = 6.9e-45
 Identities = 72/184 (39%), Positives = 108/184 (58%)

Query:   201 KTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKE 260
             + P EG    L+    +  L DG VF K G +G + L F+T+EEQV  GL+     MKK 
Sbjct:   260 RRPNEGASVTLRVTGKV--LPDGPVFMKHG-EGSE-LRFVTEEEQVPEGLELAVMKMKKG 315

Query:   261 EWAIVTINHE-YGFGN----VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKI 315
             E A+VT+N   YG+G+    V  +     +P+ ++L +EV+++DF   K  WEM++  K 
Sbjct:   316 ETAVVTVNDPAYGYGDKPRTVSVEGSEVEVPAGSRLQFEVDLVDFTNAKETWEMSDIEKA 375

Query:   316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
              AA ++K++GN  FK+GK  RA   +++A   VS D SF D+ + + K ++ SCWLN AA
Sbjct:   376 HAAKQRKDKGNAFFKSGKLARAQSCWDRAVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAA 435

Query:   376 CCLK 379
               LK
Sbjct:   436 LDLK 439

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 8.6e-43, Sum P(2) = 8.6e-43
 Identities = 59/161 (36%), Positives = 92/161 (57%)

Query:    33 APLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPL 92
             APL+  +     + G+ K + + G   ++P  GD+VT+HY G LLDGTKFDS+ DR D  
Sbjct:    11 APLEGTDITPKRDEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKF 70

Query:    93 TFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELV 151
             +F LG G+V    D  + TMK  E  +   T   E  +G+ G    +PPN+ + FE+EL 
Sbjct:    71 SFDLGKGEVIKAWDIAVATMKVGE--ICQITCKPEYAYGLAGSPPKIPPNATLIFEIELF 128

Query:   152 SWITVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQ 190
              +    DL+  +DGGI+++I +KGE    P +   V ++++
Sbjct:   129 EF-KGEDLTDDEDGGIIRRIRKKGEGYLKPNEGALVEIQFE 168

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 59/161 (36%), Positives = 92/161 (57%)

Query:    33 APLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPL 92
             APL+  +     + G+ K + + G   ++P  GD+VT+HY G LLDGTKFDS+ DR D  
Sbjct:    11 APLEGTDITPKRDEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKF 70

Query:    93 TFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELV 151
             +F LG G+V    D  + TMK  E  +   T   E  +G+ G    +PPN+ + FE+EL 
Sbjct:    71 SFDLGKGEVIKAWDIAVATMKVGE--ICQITCKPEYAYGLAGSPPKIPPNATLIFEIELF 128

Query:   152 SWITVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQ 190
              +    DL+  +DGGI+++I +KGE    P +   V ++++
Sbjct:   129 EF-KGEDLTDDEDGGIIRRIRKKGEGYLKPNEGALVEIQFE 168

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

ZFIN|ZDB-GENE-030131-514 fkbp4 "FK506 binding protein 4" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
 Identities = 56/140 (40%), Positives = 82/140 (58%)

Query:    45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
             + G+ K + K G   + P  GD+V +HYVGTLLDG++FDS+RDR +  +F+LG GQV   
Sbjct:    25 DGGVLKLVKKEGTGTELPMIGDKVFVHYVGTLLDGSQFDSSRDRGEKFSFELGKGQVIKA 84

Query:   105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI--TVVDLSK 161
              D G+ TMK  E  +   T   E  +G  G    +PPN+ + F+VEL  +    + D  +
Sbjct:    85 WDIGVATMKIGE--ICRLTCKPEYAYGAAGSPPKIPPNATLLFQVELFDFRGEDITD-DE 141

Query:   162 DGGIVKKILEKGERDASPGD 181
             DGGI ++I+ KGE    P +
Sbjct:   142 DGGITRRIITKGEGYTKPNE 161

GO:0006457 "protein folding" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 248 (92.4 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 58/141 (41%), Positives = 80/141 (56%)

Query:    45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
             + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct:    30 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query:   105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS-- 160
              D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +    DL+  
Sbjct:    90 WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTDD 145

Query:   161 KDGGIVKKILEKGERDASPGD 181
             +DGGI+++I  +GE  A P D
Sbjct:   146 EDGGIIRRIRTRGEGYARPND 166

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.4140.1 hypothetical protein (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	7e-26
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	8e-21
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-13
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	4e-10
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	5e-09
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	7e-08
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	3e-07
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	5e-07
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	6e-06
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	2e-04

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 4/95 (4%)

Query: 59  WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118
            +  + GD VT+HY G L DGT FDS++DR  P  F LG+GQV  G D G++ MK  E  
Sbjct: 2   PEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGE-- 59

Query: 119 VFTFTLPSELRFGVEGR--DSLPPNSVVQFEVELV 151
               T+P EL +G EG     +PPN+ + FEVEL+
Sbjct: 60  KRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 89.0 bits (221), Expect = 8e-21
 Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K+LK G D   P+ GD VT+HY GTL+DGT FDS+ DR  P  F L  G V  G 
Sbjct: 101 SGLQYKVLKAG-DGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPL--GGVIPGW 157

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVS 152
           D G+  MK         T+P EL +G  G    +PPNS + FEVEL+ 
Sbjct: 158 DEGLQGMKVGG--KRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y  +LEDGTVF+    D  +P EF     QVI G D     MK  E   +TI  E  +
Sbjct: 13  VHYTGKLEDGTVFDS-SKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPELAY 71

Query: 274 GNVEAKRDLATIPSCAKLYYEVEM 297
           G          IP  A L +EVE+
Sbjct: 72  GEEGLAGG--VIPPNATLVFEVEL 93

Length = 94

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  K+ K G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 146 TGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGW 202

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +KK         +P EL +G  G   +P NS + F+VEL+ 
Sbjct: 203 TEGLKNIKKG--GKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD V++HY   + DG   D+T + Y PLTF +G GQ+  GL+  ++  +  E   FT  +
Sbjct: 6   GDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGE--EFTVEI 63

Query: 125 PSELRFGV 132
           P E  FG 
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ ++L  G +   P   D V +HY G L+DGT FDS+  R +P  F +    V  G 
Sbjct: 102 SGLQFRVLTQG-EGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGW 158

Query: 106 DNGIITM---KKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELV 151
              +  M    K E      T+P EL +G  G   S+PP S + FEVEL+
Sbjct: 159 IEALTLMPVGSKWE-----LTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           ++Y+V+  GDG    K     V        Y   L DGTVF+   YD  QP EF      
Sbjct: 103 LQYKVLKAGDGAAPKKGDTVTVH-------YTGTLIDGTVFD-SSYDRGQPAEFPLG--G 152

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G D     MK      +TI  E  +G    +     IP  + L +EVE++D 
Sbjct: 153 VIPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 54  KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK 113
           K+  +  TPEFGD VT  Y    LDG    S  +   P T+K+    + +GL +G+  MK
Sbjct: 78  KDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMK 136

Query: 114 KRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
           + E A F F  PS   +G  G ++ + PN  +   V L++
Sbjct: 137 EGETATFLF--PSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 20/116 (17%)

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DG+  +STR+   P  F+LG G ++ GL+  ++ +K  +    TF+L  E
Sbjct: 11  VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKK--TFSLEPE 68

Query: 128 LRFGVEGRDSLPPNSVVQF------------EVELVSWITVVDLSKDGGIVKKILE 171
             FGV   D      ++Q+            E+  +   T +D S+  G++++I  
Sbjct: 69  AAFGVPSPD------LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREING 118

Length = 156

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  ++EDG V +    +   PL FI    Q+I GL+      +  E   V I  E  F
Sbjct: 11  LHYTLKVEDGEVVDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAF 69

Query: 274 G 274
           G
Sbjct: 70  G 70

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.91
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.9
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.89
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.87
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.87
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.85
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.79
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.79
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.77
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.76
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.74
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.73
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.72
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.68
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.67
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.44
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.26
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.22
KOG4234	271	consensus TPR repeat-containing protein [General f	99.19
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.88
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.87
KOG0553	304	consensus TPR repeat-containing protein [General f	98.83
PRK01490	435	tig trigger factor; Provisional	98.66
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.65
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.61
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.27
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.08
PRK01490	435	tig trigger factor; Provisional	98.06
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.03
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.99
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.82
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.6
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.32
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.67
PF13371	73	TPR_9: Tetratricopeptide repeat	96.33
PRK15359	144	type III secretion system chaperone protein SscB;	96.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.02
PF13431	34	TPR_17: Tetratricopeptide repeat	95.61
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.41
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.41
KOG2003	840	consensus TPR repeat-containing protein [General f	95.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.16
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.06
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.01
KOG4555	175	consensus TPR repeat-containing protein [Function	95.0
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.92
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.82
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.43
PRK15359	144	type III secretion system chaperone protein SscB;	94.41
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.33
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.15
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	93.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	93.81
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	93.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.68
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	93.64
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	93.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.3
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	93.22
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.89
PF04212	69	MIT: MIT (microtubule interacting and transport) d	92.84
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.69
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	92.68
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	92.46
KOG1310	758	consensus WD40 repeat protein [General function pr	92.31
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	92.25
cd02656	75	MIT MIT: domain contained within Microtubule Inter	92.0
PRK11189	296	lipoprotein NlpI; Provisional	91.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	91.75
PRK15331	165	chaperone protein SicA; Provisional	91.42
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.33
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.04
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	90.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	90.47
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.4
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	90.1
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	90.04
PRK11189	296	lipoprotein NlpI; Provisional	89.96
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	89.84
PF13512	142	TPR_18: Tetratricopeptide repeat	89.45
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	89.25
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.79
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	88.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.4
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	88.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.89
PRK10803	263	tol-pal system protein YbgF; Provisional	87.47
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	86.62
PRK12370	553	invasion protein regulator; Provisional	86.61
PF12688	120	TPR_5: Tetratrico peptide repeat	86.56
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	86.41
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	85.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	85.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	85.44
KOG1125	579	consensus TPR repeat-containing protein [General f	85.44
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.29
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	84.84
PF13428	44	TPR_14: Tetratricopeptide repeat	84.5
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	84.34
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	84.31
PRK10370	198	formate-dependent nitrite reductase complex subuni	83.71
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.68
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	82.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.46
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	82.21
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	81.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	81.89
KOG2003	840	consensus TPR repeat-containing protein [General f	81.38
PRK15331	165	chaperone protein SicA; Provisional	80.99
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	80.35

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-52  Score=390.00  Aligned_cols=274  Identities=46%  Similarity=0.753  Sum_probs=251.0

Q ss_pred             EccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCC
Q 016518           54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE  133 (388)
Q Consensus        54 ~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~  133 (388)
                      ++|+|+..|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.|.+|.+|+.++..|+.                |..
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~----------------g~~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK----------------GEA   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc----------------ccc
Confidence            4789999999999999999999999999999998 79999999999999999999999998                445


Q ss_pred             CCC-CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCC-CCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEe
Q 016518          134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL  211 (388)
Q Consensus       134 ~~~-~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g-~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~  211 (388)
                      +.+ .||++++|.|+|+|+          |++|.|+|+++|.+ ...|..+..|++||...+.                 
T Consensus        64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~-----------------  116 (397)
T KOG0543|consen   64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE-----------------  116 (397)
T ss_pred             CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC-----------------
Confidence            555 799999999999998          89999999999999 7899999888877655554                 


Q ss_pred             eceEEEEeecCceEEeecCCCCCCCeEEEccC-CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCe
Q 016518          212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK  290 (388)
Q Consensus       212 ~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~-~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~  290 (388)
                                ++ +|+++    ...++|.+|+ ..++.||+.||++|++||++.|+|+|.|+||+.+.+  ++.|||+++
T Consensus       117 ----------~~-~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~  179 (397)
T KOG0543|consen  117 ----------DG-VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNAT  179 (397)
T ss_pred             ----------Cc-ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCce
Confidence                      44 56655    3458888888 589999999999999999999999999999955543  699999999


Q ss_pred             EEEEEEEeeee-cCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 016518          291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC  369 (388)
Q Consensus       291 l~f~veL~~~~-~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~  369 (388)
                      |.|+|+|++|. .....|.|..+|+++.|...|+.||.+||+|+|..|+.+|+||+++|++....++++.+++.++++.|
T Consensus       180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~  259 (397)
T KOG0543|consen  180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC  259 (397)
T ss_pred             EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence            99999999999 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHccCchhhhC
Q 016518          370 WLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       370 ~~NlA~c~lKl~~~~~ai~  388 (388)
                      |+|+|+||+|+++|..||+
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~  278 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIE  278 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHH
Confidence            9999999999999999873

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.7e-31  Score=221.40  Aligned_cols=177  Identities=28%  Similarity=0.406  Sum_probs=139.4

Q ss_pred             EeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccceeec---ccCcCccceeeEe
Q 016518           94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVV---DLSKDGGIVKKIL  170 (388)
Q Consensus        94 ~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~~~---dv~~d~~v~kkil  170 (388)
                      |++|.+.++++++.++.+|+.|+++++  .+||+++||..+..   .-..++|.+.++.+....   ....+..+...++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~   75 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL   75 (188)
T ss_pred             CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence            467889999999999999999999999  99999999955432   223456777665554321   2223334433444


Q ss_pred             ecCC-CCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCcccch
Q 016518          171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG  249 (388)
Q Consensus       171 ~~G~-g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~g  249 (388)
                      .+-. -..+...+|.++                           +||+|.+.||++|||| |.++.|++|+||.++|++|
T Consensus        76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG  127 (188)
T KOG0549|consen   76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG  127 (188)
T ss_pred             ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence            4311 123344445444                           5788888999999999 9999999999999999999


Q ss_pred             HHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCc
Q 016518          250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP  306 (388)
Q Consensus       250 le~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~  306 (388)
                      ||++|.+|++||+..++|||++|||++|.   ++.||++++|+|+|||+++.+.++.
T Consensus       128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~---~~~IP~~A~LiFdiELv~i~~~~~~  181 (188)
T KOG0549|consen  128 WDQGLLGMCVGEKRKLIIPPHLGYGERGA---PPKIPGDAVLIFDIELVKIERGPPE  181 (188)
T ss_pred             HhHHhhhhCcccceEEecCccccCccCCC---CCCCCCCeeEEEEEEEEEeecCCCc
Confidence            99999999999999999999999999998   5669999999999999999886543

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-27  Score=177.07  Aligned_cols=105  Identities=41%  Similarity=0.768  Sum_probs=102.4

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCC
Q 016518           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (388)
Q Consensus        47 g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~  126 (388)
                      |+.+++|.+|+|...|++||.|++||++.+.||+.|+||.+++.||.|.+|.|++|.||++++..|.+||++++  .|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence            68999999999988999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       127 ~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      ++|||..|.+ .||||++|+|+|||+++
T Consensus        80 d~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            9999999988 99999999999999876

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4e-27  Score=201.78  Aligned_cols=113  Identities=43%  Similarity=0.664  Sum_probs=107.0

Q ss_pred             cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518           36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (388)
Q Consensus        36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G  115 (388)
                      .....+.++++|++|++++.|+| ..|..+|.|++||++++.||++||||+++++|+.|+||  ++|+||+++|.+|++|
T Consensus        91 ~k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG  167 (205)
T COG0545          91 AKEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVG  167 (205)
T ss_pred             cccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCC
Confidence            34445688999999999999999 89999999999999999999999999999999999999  9999999999999999


Q ss_pred             ceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       116 e~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      +++++  +|||++|||..|.+ .||||++|+|+|+|+++
T Consensus       168 ~k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         168 GKRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             ceEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            99999  99999999999977 69999999999999876

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-26  Score=171.80  Aligned_cols=107  Identities=30%  Similarity=0.505  Sum_probs=99.9

Q ss_pred             cceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccC
Q 016518          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (388)
Q Consensus       164 ~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~  243 (388)
                      ++.+.++.+|++...|..++.|++                           ||+|.|.||+.||+| .+++.|+.|.||.
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk   53 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK   53 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence            467889999999999999999985                           578888899999999 7999999999999


Q ss_pred             CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       244 ~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      ++||.||+.++..|.+||++.+.|+|+||||..|.   +..||||++|+|+|||+++.
T Consensus        54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~---p~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH---PGGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             cceeechhhcchhccccccceeeeccccccCCCCC---CCccCCCcEEEEEEEEEecC
Confidence            99999999999999999999999999999999997   78999999999999999873

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.4e-25  Score=191.50  Aligned_cols=202  Identities=22%  Similarity=0.328  Sum_probs=164.2

Q ss_pred             cCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEE
Q 016518          161 KDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF  239 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f  239 (388)
                      .-.+|.|+|+..|+|. ..-.+|..|++||.....+.                         .++++|.| ...+.|+++
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmei   61 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEI   61 (329)
T ss_pred             cchhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEE
Confidence            3457899999999986 33448899999998766542                         35677777 678999999


Q ss_pred             EccCCcccchHHHHHccccCCcEEEEEecCC----CCCCCcccccC------------------------------CCCC
Q 016518          240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHE----YGFGNVEAKRD------------------------------LATI  285 (388)
Q Consensus       240 ~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~----~~yg~~~~~~~------------------------------~~~i  285 (388)
                      ++|...-.|.||.+|.+|+++|.+.|.|...    |-|-++..+.-                              ....
T Consensus        62 iiGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~  141 (329)
T KOG0545|consen   62 IIGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQ  141 (329)
T ss_pred             eeccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHh
Confidence            9999999999999999999999999998643    22222211100                              0011


Q ss_pred             CCCCeEEEEEEEeeeec----CcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC---CCCCChHH
Q 016518          286 PSCAKLYYEVEMMDFIK----EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDE  358 (388)
Q Consensus       286 p~~~~l~f~veL~~~~~----~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~---~~~~~~~~  358 (388)
                      ...++|+|.|+|+.++.    ..++|.||.+||+..+..++++||.+|+.|+|.+|+.+|+.|+..|+.   .....+.+
T Consensus       142 knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e  221 (329)
T KOG0545|consen  142 KNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE  221 (329)
T ss_pred             hCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence            12468999999999985    578899999999999999999999999999999999999999998865   33456789


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          359 QKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       359 ~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      |.++..+...+++|.|.|+|+.++|.++++
T Consensus       222 W~eLdk~~tpLllNy~QC~L~~~e~yevle  251 (329)
T KOG0545|consen  222 WLELDKMITPLLLNYCQCLLKKEEYYEVLE  251 (329)
T ss_pred             HHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999988863

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-23  Score=179.37  Aligned_cols=106  Identities=36%  Similarity=0.527  Sum_probs=96.0

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      -.+++..++++.|.|. .|..++.|++                           ||+|+|.||++||+| +++++|+.|.
T Consensus        99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~  149 (205)
T COG0545          99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP  149 (205)
T ss_pred             CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence            3567888999999886 6777777775                           588889999999999 9999999999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~  300 (388)
                      ||  +||+||+.+|.+|++|++++++|||++|||.+|.   +..||||++|+|+|+|+++
T Consensus       150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~---~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV---PGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC---CCCCCCCCeEEEEEEEEec
Confidence            98  9999999999999999999999999999999997   4559999999999999987

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.3e-23  Score=173.72  Aligned_cols=109  Identities=37%  Similarity=0.618  Sum_probs=98.6

Q ss_pred             CCCeEEEEEEccC-CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEE
Q 016518           45 NSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (388)
Q Consensus        45 ~~g~~~~il~~G~-g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~  123 (388)
                      .+.++..++..=. ...+.++||+|.+||++.+.||++|+|||.++.|++|.||.+++|+||+.+|.+|++||++++  .
T Consensus        67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl--~  144 (188)
T KOG0549|consen   67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL--I  144 (188)
T ss_pred             CCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--e
Confidence            4555555555422 457889999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCcEEEEEEEcccee
Q 016518          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       124 vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~  155 (388)
                      |||+++||+.|.+ .||++++|+|+|+|+++..
T Consensus       145 IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  145 IPPHLGYGERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             cCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence            9999999999987 7999999999999998864

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=5.7e-23  Score=182.24  Aligned_cols=113  Identities=35%  Similarity=0.539  Sum_probs=106.6

Q ss_pred             cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518           36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (388)
Q Consensus        36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G  115 (388)
                      +..+.+..+++|++|+|+++|+| ..|..+|.|.+||++++.||++|++|+.++.|+.|.+|  .+++||+++|.+|++|
T Consensus        92 ~k~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G  168 (206)
T PRK11570         92 AKKEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVG  168 (206)
T ss_pred             hhcCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCC
Confidence            34566788999999999999999 78999999999999999999999999998899999997  7999999999999999


Q ss_pred             ceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       116 e~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      +++.|  +|||+++||..|.+ .|||+++|+|+|+|+++
T Consensus       169 ~k~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        169 SKWEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CEEEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            99999  99999999999987 89999999999999876

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.87  E-value=1.1e-21  Score=170.01  Aligned_cols=110  Identities=31%  Similarity=0.447  Sum_probs=102.6

Q ss_pred             eeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceE
Q 016518           41 RGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (388)
Q Consensus        41 ~~~~~~g~~~~il~~--G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~  118 (388)
                      +..+++|++|++++.  |+| ..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||++
T Consensus        64 ~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~  141 (177)
T TIGR03516        64 YETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA  141 (177)
T ss_pred             ceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence            377899999999987  555 78999999999999999999999999875 69999999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       119 ~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +|  ++||++|||..|.+ .||+|++|+|+|+|+++.
T Consensus       142 ~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       142 TF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            99  99999999999977 899999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.4e-21  Score=171.95  Aligned_cols=108  Identities=34%  Similarity=0.608  Sum_probs=104.0

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeE-EeeCCCcccccHHHHhcccccCceEE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~-dg~~~~ss~~~~~p~~-~~lg~~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      .+.++||+|+.++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.||.+++|+||+.++.+|++|+.++
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            46799999999999999 899999999999999999 99999999976 8999 99999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccc
Q 016518          120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~  153 (388)
                      |  +|||+++||..+.+.||+|++|+|+|+|+.+
T Consensus       194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence            9  9999999999999999999999999999876

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.85  E-value=6.4e-21  Score=175.20  Aligned_cols=115  Identities=32%  Similarity=0.574  Sum_probs=107.4

Q ss_pred             cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518           36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (388)
Q Consensus        36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G  115 (388)
                      ...+.+..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  .+++||+++|.+|++|
T Consensus       136 ~k~~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~G  212 (269)
T PRK10902        136 AKEKGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKG  212 (269)
T ss_pred             ccCCCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCC
Confidence            44556788899999999999999 79999999999999999999999999988899999997  6999999999999999


Q ss_pred             ceEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEcccee
Q 016518          116 ECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       116 e~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~  155 (388)
                      +++.|  +||++++||..+.+.||++++|+|+|+|+++..
T Consensus       213 ek~~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        213 GKIKL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             cEEEE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence            99999  999999999999889999999999999998853

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.79  E-value=5.2e-19  Score=138.38  Aligned_cols=92  Identities=47%  Similarity=0.805  Sum_probs=86.8

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC-
Q 016518           58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-  136 (388)
Q Consensus        58 g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~-  136 (388)
                      |..+|+.||+|+|||++++.+|+++++++..+.|+.|.+|.+.+++||+++|.+|++||+++|  .||++++||..+.. 
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence            345799999999999999999999999988889999999999999999999999999999999  99999999999874 


Q ss_pred             -CCCCCCcEEEEEEEc
Q 016518          137 -SLPPNSVVQFEVELV  151 (388)
Q Consensus       137 -~ip~~~~l~~~i~l~  151 (388)
                       .||++++|.|+|+|+
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence             799999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.79  E-value=1.3e-18  Score=154.44  Aligned_cols=105  Identities=33%  Similarity=0.525  Sum_probs=95.1

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEc
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~l  241 (388)
                      ..++..+++++|+|. .|..++.|++|                           |.+++.||++||++ +.++.|+.|.+
T Consensus       101 ~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~l  151 (206)
T PRK11570        101 ESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFPV  151 (206)
T ss_pred             CCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEEe
Confidence            457889999999997 68888888865                           66777789999999 88899999999


Q ss_pred             cCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       242 G~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~  300 (388)
                      |  .+++||+.+|.+|++|+++.|.|||++|||+.+.   .+.|||+++|+|+|+|++|
T Consensus       152 ~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~---~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        152 N--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA---GASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             e--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCCCCeEEEEEEEEEE
Confidence            7  7999999999999999999999999999999987   5789999999999999997

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.9e-18  Score=151.09  Aligned_cols=106  Identities=30%  Similarity=0.466  Sum_probs=89.9

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCCCCCCeE-E
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLE-F  239 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~~~~p~~-f  239 (388)
                      .+++...-++.|.|. .|..|..|.+                           ||+|++. +|++||++  ..+.|+. |
T Consensus       119 ~~Gl~y~D~~vG~G~-~a~~G~rV~v---------------------------~Y~Gkl~~~GkvFd~~--~~~kp~~~f  168 (226)
T KOG0552|consen  119 PGGLRYEDLRVGSGP-SAKKGKRVSV---------------------------RYIGKLKGNGKVFDSN--FGGKPFKLF  168 (226)
T ss_pred             CCCcEEEEEEecCCC-CCCCCCEEEE---------------------------EEEEEecCCCeEeecc--cCCCCcccc
Confidence            345555566667765 6777777765                           4667775 89999998  5567888 9


Q ss_pred             EccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       240 ~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      .+|.+.||+||+.++.+|++|.+.+|+|||.+|||..+.    +.||||++|+|+|+|+.+.
T Consensus       169 ~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~----~~IppnstL~fdVEL~~v~  226 (226)
T KOG0552|consen  169 RLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV----PEIPPNSTLVFDVELLSVK  226 (226)
T ss_pred             ccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCc----CcCCCCCcEEEEEEEEecC
Confidence            999999999999999999999999999999999999997    6999999999999999873

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.76  E-value=8.2e-18  Score=145.78  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             CccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       162 d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      ..++...++..+.|. ..|..++.|++|                           |++++.||++|+++ +. ..|+.|.
T Consensus        68 ~sGl~Y~v~~~~~g~g~~p~~gd~V~v~---------------------------Y~~~~~dG~v~~ss-~~-~~P~~f~  118 (177)
T TIGR03516        68 QNGFWYYYNQKDTGEGTTPEFGDLVTFE---------------------------YDIRALDGDVIYSE-EE-LGPQTYK  118 (177)
T ss_pred             CCccEEEEEEecCCCCCcCCCCCEEEEE---------------------------EEEEeCCCCEEEeC-CC-CCCEEEE
Confidence            345555556553332 357777777755                           66677788889888 44 4599999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +|.+++++||+.+|.+|++||++.|++||++|||..|.   ...||||++|+|+|+|++|.
T Consensus       119 vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~---~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       119 VDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD---QNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             eCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCcCCcEEEEEEEEEec
Confidence            99999999999999999999999999999999999986   57899999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.74  E-value=3.4e-17  Score=128.05  Aligned_cols=81  Identities=33%  Similarity=0.579  Sum_probs=72.4

Q ss_pred             EEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEE
Q 016518          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (388)
Q Consensus       215 ~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~  294 (388)
                      ||.+++.+|++|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|.+|+.++||+.+...  ..||++++|+|+
T Consensus        14 ~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f~   90 (94)
T PF00254_consen   14 HYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVFE   90 (94)
T ss_dssp             EEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEEE
T ss_pred             EEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEEE
Confidence            355555678889988 78899999999999999999999999999999999999999999988743  459999999999


Q ss_pred             EEEe
Q 016518          295 VEMM  298 (388)
Q Consensus       295 veL~  298 (388)
                      |+|+
T Consensus        91 Iell   94 (94)
T PF00254_consen   91 IELL   94 (94)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9996

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.73  E-value=2.1e-17  Score=140.53  Aligned_cols=124  Identities=25%  Similarity=0.367  Sum_probs=94.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      .++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.|  .|||+.|||..+..    
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~----   77 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPD----   77 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence            578999999999999999999999998779999999999999999999999999999999  99999999998644    


Q ss_pred             CCcEEEEEEEccc--------eeecccC-cCccc-eeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          141 NSVVQFEVELVSW--------ITVVDLS-KDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       141 ~~~l~~~i~l~~~--------~~~~dv~-~d~~v-~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                         ++..+....+        .....+. .+|.. .-+|+.        ..+..|++++||+|+|.++.|+
T Consensus        78 ---~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~--------i~~~~v~vD~NHPLAGk~L~f~  137 (156)
T PRK15095         78 ---LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIRE--------INGDSITVDFNHPLAGQTVHFD  137 (156)
T ss_pred             ---HEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEE--------EcCCEEEEECCCcCCCCEEEEE
Confidence               2222221111        1111111 22222 222332        2567999999999999997763

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.8e-17  Score=140.18  Aligned_cols=129  Identities=29%  Similarity=0.419  Sum_probs=95.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC---C
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S  137 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~---~  137 (388)
                      .+++||+|++||++++.||++|++|...+.|+.|.+|.+++++||++||.+|.+|++.+|  .|||+.|||.++..   .
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~   79 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR   79 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence            578999999999999999999999987568999999999999999999999999999999  99999999999765   2


Q ss_pred             CCCCCcEEEEEEEccceeecccC-cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       138 ip~~~~l~~~i~l~~~~~~~dv~-~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      +|.+..-... + +.......+. +++.+.-+|+.        ..++.|+++|||+|+|.++.|+
T Consensus        80 vp~~~F~~~~-~-~~vGm~~~~~~~~~~~~~~V~~--------V~~~~V~VDfNHpLAGktL~fe  134 (174)
T COG1047          80 VPRDEFQGVG-E-LEVGMEVEAEGGDGEIPGVVTE--------VSGDRVTVDFNHPLAGKTLHFE  134 (174)
T ss_pred             ecHHHhCcCC-C-CCCCcEEEEcCCCceeeEEEEE--------EcCCEEEEeCCCcCCCCeEEEE
Confidence            3322211110 0 0111111111 11112222222        2567999999999999998874

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.70  E-value=1.4e-16  Score=146.56  Aligned_cols=107  Identities=30%  Similarity=0.524  Sum_probs=95.7

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      -+.++..+++++|+|. .|..++.|++|                           |.|++.||++||++ +.++.|+.|.
T Consensus       144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~  194 (269)
T PRK10902        144 TSTGLLYKVEKEGTGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR  194 (269)
T ss_pred             CCCccEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEeCCCCEeecc-ccCCCceEEe
Confidence            3567899999999997 78888888865                           66666789999998 8888999999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      ++  .++|||+.+|.+|++|+++.|.||+.++||..+.    +.|||+++|+|+|+|++|..
T Consensus       195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC----CCCCCCCcEEEEEEEEEecc
Confidence            96  6999999999999999999999999999999876    57999999999999999975

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=7.2e-16  Score=145.44  Aligned_cols=143  Identities=30%  Similarity=0.482  Sum_probs=112.5

Q ss_pred             cccccccccCCCccccccCC--CcccCCCCCccCCCc------eeecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEE
Q 016518            6 VMTLEKGANLSDIDGEEEEP--GEVIESAAPLKVGEE------RGLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTL   76 (388)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~g~~~~il~~G~g-~~~~~~gd~V~v~y~~~~   76 (388)
                      .|++.++.++..|+.-..-.  .+.   .+++.....      +.+.+++|.++|+++|.| ..+|.+|.+|.+||.++.
T Consensus        39 ~~~lg~g~vi~~~~~gv~tm~~g~~---~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~  115 (397)
T KOG0543|consen   39 KFDLGKGSVIKGWDLGVATMKKGEA---GSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL  115 (397)
T ss_pred             eeecCCCcccccccccccccccccc---CCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE
Confidence            47889999999877522111  111   111122222      234499999999999999 788999999999999999


Q ss_pred             cCCcEEecccCCCCCeEEeeCC-CcccccHHHHhcccccCceEEEEEEcCCCCCCCCCC-CC-CCCCCCcEEEEEEEccc
Q 016518           77 LDGTKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus        77 ~dg~~~~ss~~~~~p~~~~lg~-~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~-~~-~ip~~~~l~~~i~l~~~  153 (388)
                      .++ +|+++.   .+|.|.+|+ ..+|.||+.+|..|++||.+.|  +|+|+|+||+.+ ++ .|||++++.|+|+|+++
T Consensus       116 ~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v--~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f  189 (397)
T KOG0543|consen  116 EDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV--TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDF  189 (397)
T ss_pred             CCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE--EeCcccccCCCCCCCCCCCCCceEEEEEEEEee
Confidence            777 777664   458888888 5899999999999999999999  999999999554 44 99999999999999998


Q ss_pred             eeec
Q 016518          154 ITVV  157 (388)
Q Consensus       154 ~~~~  157 (388)
                      ....
T Consensus       190 ~~~~  193 (397)
T KOG0543|consen  190 ELKE  193 (397)
T ss_pred             ecCc
Confidence            6433

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.67  E-value=3.1e-16  Score=136.85  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC---C
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S  137 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~---~  137 (388)
                      +++++++|+|+|++++.||++|++|+.. .|+.|++|.++++|+|+++|.+|++|++++|  .|||+.|||.+...   .
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~-~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~   78 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR   78 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCCC-CCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence            4788999999999999999999999864 8999999999999999999999999999999  99999999998754   2


Q ss_pred             CCCCCcEEEEEEEccceeecccC-cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       138 ip~~~~l~~~i~l~~~~~~~dv~-~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      +|....-  .++-+...+..... .++.+.-+|+.        ..++.|+++||++|++.++.|+
T Consensus        79 vpr~~F~--~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~  133 (196)
T PRK10737         79 VPKDVFM--GVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_pred             ecHHHCC--CccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEE
Confidence            2221100  00000111111111 22222222222        2567999999999999998774

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.44  E-value=2.7e-13  Score=115.38  Aligned_cols=63  Identities=21%  Similarity=0.362  Sum_probs=58.3

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  277 (388)
                      +||++++.||++||++ +..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||...
T Consensus        13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            6688888889999999 67789999999999999999999999999999999999999999765

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.1e-11  Score=103.39  Aligned_cols=63  Identities=30%  Similarity=0.462  Sum_probs=57.5

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  277 (388)
                      ++|++++.||++||+| .....|+.|.+|.+++++|||.||.+|.+|++..|.|||+-|||.+.
T Consensus        11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            6788888788999998 44478999999999999999999999999999999999999999875

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.22  E-value=3.8e-11  Score=104.99  Aligned_cols=63  Identities=19%  Similarity=0.404  Sum_probs=56.1

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      ++|+.++.||++||++ + ...|++|.+|.++++|+||.+|.+|.+|++..|.|||+.|||.+..
T Consensus        11 l~Y~l~~~dG~v~dst-~-~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~   73 (196)
T PRK10737         11 LAYQVRTEDGVLVDES-P-VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_pred             EEEEEEeCCCCEEEec-C-CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            5677777788889988 3 4789999999999999999999999999999999999999998753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=2.7e-11  Score=104.09  Aligned_cols=65  Identities=37%  Similarity=0.519  Sum_probs=60.2

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      .+..|.++|.+||.+|++|+|..|..+|+.||..++...          ...|..||+|+|+|.+||+.|..||+
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~  155 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIE  155 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence            488999999999999999999999999999999998754          57789999999999999999999873

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.9e-09  Score=103.86  Aligned_cols=68  Identities=28%  Similarity=0.426  Sum_probs=61.9

Q ss_pred             ccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (388)
Q Consensus       306 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~  385 (388)
                      ...|+.+++++.|..+|..||.+|++|+|.+||.+|++||.+++..               ...|+|+|+||..+++|++
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence            3567889999999999999999999999999999999999987653               4899999999999999999


Q ss_pred             hhC
Q 016518          386 IRL  388 (388)
Q Consensus       386 ai~  388 (388)
                      +++
T Consensus       168 Vie  170 (606)
T KOG0547|consen  168 VIE  170 (606)
T ss_pred             HHH
Confidence            874

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2e-09  Score=106.23  Aligned_cols=115  Identities=22%  Similarity=0.332  Sum_probs=92.3

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~  121 (388)
                      .+....-+..++..-++ . ++.||+|+|+|.++. ||..|.+..  .+.+.|.||+|++||||+.+|.||+.|++..|+
T Consensus       140 ~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~  214 (441)
T COG0544         140 ELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIK  214 (441)
T ss_pred             HHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEE
Confidence            34444445555555555 3 999999999999964 999888764  378999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCCCCCcEEEEEEEccceeecccCcCcccee
Q 016518          122 FTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVK  167 (388)
Q Consensus       122 ~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~k  167 (388)
                      +++|.+|.-+..      +|....|.|.+..+....-..-|....|
T Consensus       215 vtFP~dy~a~~L------aGK~a~F~V~vkeVk~~elpEldDEfAk  254 (441)
T COG0544         215 VTFPEDYHAEEL------AGKEATFKVKVKEVKKRELPELDDEFAK  254 (441)
T ss_pred             EEcccccchhHh------CCCceEEEEEEEEEeecCCCCCCHHHHH
Confidence            999999998887      7899999999998876554444444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=5e-09  Score=95.82  Aligned_cols=64  Identities=30%  Similarity=0.369  Sum_probs=58.4

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      ++.|-...|+++|.+||.+.+.++|+.|+.+|++||.+.+.+               .++|+|+|++|++|++|..||+
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVk  136 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVK  136 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHH
Confidence            344788999999999999999999999999999999987765               4999999999999999999974

>PRK01490 tig trigger factor; Provisional

Probab=98.66  E-value=8.5e-08  Score=95.84  Aligned_cols=98  Identities=24%  Similarity=0.427  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      .++.||.|+++|+++. ||..++++.  ..++.|.+|.+.+++||+++|.||++|+++.|++.+|.++.....      +
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l------a  227 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL------A  227 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC------C
Confidence            5799999999999997 898888764  378999999999999999999999999999996677766544433      6


Q ss_pred             CCcEEEEEEEccceeecccCcCcccee
Q 016518          141 NSVVQFEVELVSWITVVDLSKDGGIVK  167 (388)
Q Consensus       141 ~~~l~~~i~l~~~~~~~dv~~d~~v~k  167 (388)
                      |....|.|.+.++....-..-|..+.+
T Consensus       228 gk~~~f~v~v~~V~~~~~pel~Defak  254 (435)
T PRK01490        228 GKEATFKVTVKEVKEKELPELDDEFAK  254 (435)
T ss_pred             CCeEEEEEEEEEeccCCCCCCCHHHHH
Confidence            889999999998876443333333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.65  E-value=2.2e-08  Score=92.81  Aligned_cols=61  Identities=33%  Similarity=0.418  Sum_probs=54.8

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      .++.+..+.++|++||.+||+|+|.+||.||++++...++.               ..+|.|+|++|+|++.|..|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~A  150 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQA  150 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999977765               48899999999999998765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.6e-08  Score=92.02  Aligned_cols=62  Identities=32%  Similarity=0.401  Sum_probs=55.1

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +.|..+|+.||++||.++|..|+..|+++|+--..+           ..+..+||+|+|+|++-+++|..||+
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~  140 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALN  140 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999854443           35678999999999999999999873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.61  E-value=6e-08  Score=101.29  Aligned_cols=89  Identities=26%  Similarity=0.382  Sum_probs=74.9

Q ss_pred             CCCCCCCeEEEEEEEeeeecCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHH
Q 016518          283 ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV  362 (388)
Q Consensus       283 ~~ip~~~~l~f~veL~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~  362 (388)
                      ..+|+.+.+....++..++ ....|.|+++++...|..+|..||.+|+.|+|.+|+..|++|+.+.+.            
T Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------  159 (615)
T TIGR00990        93 STAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------  159 (615)
T ss_pred             CCCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------------
Confidence            4566777777777776655 456799999999999999999999999999999999999999986542            


Q ss_pred             HHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          363 KSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       363 ~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                          ...|+|+|.||+++++|++|++
T Consensus       160 ----~~~~~n~a~~~~~l~~~~~Ai~  181 (615)
T TIGR00990       160 ----PVYYSNRAACHNALGDWEKVVE  181 (615)
T ss_pred             ----hHHHHHHHHHHHHhCCHHHHHH
Confidence                1468999999999999999873

>TIGR00115 tig trigger factor

Probab=98.60  E-value=1.7e-07  Score=92.98  Aligned_cols=100  Identities=23%  Similarity=0.361  Sum_probs=78.7

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip  139 (388)
                      ..++.||.|+++|+++. ||..++++.  ..++.|.+|.+.+++||+.+|.||++|+++.|  .++....|+...    -
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~----~  215 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEE----L  215 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCccc----C
Confidence            36899999999999976 899998874  37999999999999999999999999999999  555444455443    2


Q ss_pred             CCCcEEEEEEEccceeecccCcCccceee
Q 016518          140 PNSVVQFEVELVSWITVVDLSKDGGIVKK  168 (388)
Q Consensus       140 ~~~~l~~~i~l~~~~~~~dv~~d~~v~kk  168 (388)
                      +|.+..|.|++.++....-..-|..+.++
T Consensus       216 ~gk~~~f~v~i~~I~~~~~peldDefak~  244 (408)
T TIGR00115       216 AGKEATFKVTVKEVKEKELPELDDEFAKE  244 (408)
T ss_pred             CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence            68999999999988765443334444444

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.1e-07  Score=92.95  Aligned_cols=58  Identities=40%  Similarity=0.567  Sum_probs=51.4

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +.+.+.|..||++|+.|+|..|++.|++||+.-+.+               ..+|+|+|+||+||+++..|+.
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~  413 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALK  413 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHH
Confidence            358888999999999999999999999999865443               5899999999999999998863

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=6.3e-07  Score=79.50  Aligned_cols=59  Identities=32%  Similarity=0.426  Sum_probs=51.5

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +-..+.++|++||.+|..++|..|+.+|.||+..-+..               ++.|.|+|+||||+++|+.+-
T Consensus         6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~   64 (284)
T KOG4642|consen    6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVE   64 (284)
T ss_pred             cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhh
Confidence            34578999999999999999999999999999755442               589999999999999998763

>TIGR00115 tig trigger factor

Probab=98.23  E-value=1.4e-05  Score=79.34  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             EEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEE
Q 016518          216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV  295 (388)
Q Consensus       216 y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v  295 (388)
                      |++.. +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+....        +|.++.|+|
T Consensus       157 ~~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f~v  224 (408)
T TIGR00115       157 FEGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATFKV  224 (408)
T ss_pred             EEEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEEEE
Confidence            44433 56666665   3578999999999999999999999999999999987667765433        578999999


Q ss_pred             EEeeeecCc
Q 016518          296 EMMDFIKEK  304 (388)
Q Consensus       296 eL~~~~~~~  304 (388)
                      +|.+|....
T Consensus       225 ~i~~I~~~~  233 (408)
T TIGR00115       225 TVKEVKEKE  233 (408)
T ss_pred             EEEEeccCC
Confidence            999998643

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.08  E-value=5.7e-06  Score=60.06  Aligned_cols=55  Identities=25%  Similarity=0.403  Sum_probs=48.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-Cchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~-~~~~ai  387 (388)
                      |..+...|+.+|+.++|.+|+..|++|+++.+..               ..++.|+|.||.+++ +|.+|+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~   58 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAI   58 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHH
Confidence            5677889999999999999999999999975432               579999999999999 799886

...

>PRK01490 tig trigger factor; Provisional

Probab=98.06  E-value=5.1e-05  Score=75.90  Aligned_cols=76  Identities=13%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             EEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEE
Q 016518          216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV  295 (388)
Q Consensus       216 y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v  295 (388)
                      |.+.+ +|..|+.+   ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+....        +|.++.|.|
T Consensus       168 ~~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f~v  235 (435)
T PRK01490        168 FVGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATFKV  235 (435)
T ss_pred             EEEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEEEE
Confidence            44443 55556554   3468899999999999999999999999999998876556655332        578999999


Q ss_pred             EEeeeecC
Q 016518          296 EMMDFIKE  303 (388)
Q Consensus       296 eL~~~~~~  303 (388)
                      +|.+|...
T Consensus       236 ~v~~V~~~  243 (435)
T PRK01490        236 TVKEVKEK  243 (435)
T ss_pred             EEEEeccC
Confidence            99999864

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.9e-06  Score=76.81  Aligned_cols=83  Identities=23%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             eecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEc--CCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceE
Q 016518           42 GLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g-~~~~~~gd~V~v~y~~~~~--dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~  118 (388)
                      .+.-.|++|+||..|+| -.....|..|+|||.....  .++++|+|+..|.|+.+++|...-.+-|+..|..|+++|.+
T Consensus         6 ~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    6 LLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             hccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            45678999999999999 2445789999999998776  35799999999999999999999999999999999999999


Q ss_pred             EEEEEcCC
Q 016518          119 VFTFTLPS  126 (388)
Q Consensus       119 ~v~~~vp~  126 (388)
                      .|  +|..
T Consensus        86 qF--~~d~   91 (329)
T KOG0545|consen   86 QF--WCDT   91 (329)
T ss_pred             Hh--hhhh
Confidence            99  6643

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.7e-06  Score=78.72  Aligned_cols=81  Identities=33%  Similarity=0.425  Sum_probs=66.7

Q ss_pred             ccc-CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHHcc
Q 016518          307 WEM-NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLK  381 (388)
Q Consensus       307 ~~l-~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~---~~-~~~~~~~~~~~~~NlA~c~lKl~  381 (388)
                      |.+ +..+.+..++.+|+.||..||+++|..|..+|.|+++++...+...+   ++ ...++.++..++.|+|+|-+|++
T Consensus       210 ~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~  289 (372)
T KOG0546|consen  210 WDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVK  289 (372)
T ss_pred             ccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccccc
Confidence            444 45678899999999999999999999999999999999985222211   12 35578999999999999999999


Q ss_pred             Cchhhh
Q 016518          382 DYQGIR  387 (388)
Q Consensus       382 ~~~~ai  387 (388)
                      .|..|+
T Consensus       290 ~~~~a~  295 (372)
T KOG0546|consen  290 GRGGAR  295 (372)
T ss_pred             CCCcce
Confidence            999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=2.1e-05  Score=74.99  Aligned_cols=63  Identities=27%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.+..+..|++||.+||+|+|..|..+|+.||.+-+..           .+....||.|+|++.+++++..+||
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eai  307 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAI  307 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhh
Confidence            56788899999999999999999999999999865442           3445788888888888888887776

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00031  Score=69.74  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHcccc
Q 016518          179 PGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMK  258 (388)
Q Consensus       179 p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~  258 (388)
                      ...|+.|+|+|.+..                            ||..|...   ..+.+.|.||.++++|||+.+|.+|+
T Consensus       158 a~~gD~v~IDf~g~i----------------------------Dg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k  206 (441)
T COG0544         158 AENGDRVTIDFEGSV----------------------------DGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMK  206 (441)
T ss_pred             cccCCEEEEEEEEEE----------------------------cCeeccCc---cccCeEEEEcCCCchhhHHhhhccCc
Confidence            567889999877654                            34444443   35678999999999999999999999


Q ss_pred             CCcEEEEEe--cCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCc
Q 016518          259 KEEWAIVTI--NHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK  304 (388)
Q Consensus       259 ~Ge~~~v~i--~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~  304 (388)
                      .|+...|.+  |.+|.-++  .        .|.+..|.|+|..|....
T Consensus       207 ~Ge~k~i~vtFP~dy~a~~--L--------aGK~a~F~V~vkeVk~~e  244 (441)
T COG0544         207 AGEEKDIKVTFPEDYHAEE--L--------AGKEATFKVKVKEVKKRE  244 (441)
T ss_pred             CCCeeEEEEEcccccchhH--h--------CCCceEEEEEEEEEeecC
Confidence            999988655  55543332  2        467899999999998643

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.60  E-value=0.00013  Score=54.21  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.-+...|.-++..|+|++|+..|++|+.+...... .       ......++.|+|.|+.+++++++|+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~   66 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEAL   66 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4667788999999999999999999999998544321 1       2234889999999999999999986

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00027  Score=67.61  Aligned_cols=63  Identities=30%  Similarity=0.390  Sum_probs=57.1

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..++-...|+..|++||.++++++|..|+..|+.|++.++.+               +..|.|+|+|++.+++|.+|.
T Consensus        41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~  103 (486)
T KOG0550|consen   41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEAL  103 (486)
T ss_pred             ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcc
Confidence            456788899999999999999999999999999999987653               689999999999999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.11  E-value=0.00092  Score=48.02  Aligned_cols=45  Identities=29%  Similarity=0.403  Sum_probs=38.1

Q ss_pred             HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +++.|+|.+|+..|++++...+.+               ..++.++|.||+++++|++|.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~   45 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAE   45 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            578999999999999999876553               466778999999999999985

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.91  E-value=0.0015  Score=46.58  Aligned_cols=50  Identities=14%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|..+++.|+|.+|+..|+++++..+.               ....+.+++.|++++++|++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~---------------~~~a~~~lg~~~~~~g~~~~A~   51 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD---------------NPEAWYLLGRILYQQGRYDEAL   51 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT---------------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHH
Confidence            4689999999999999999999986533               2578899999999999999986

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.67  E-value=0.0032  Score=61.80  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      ..+..+-..|+.+|+.|+|++|+..|++||.+-+...            .-...|.|+|.||.+++++++|++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a------------eA~~A~yNLAcaya~LGr~dEAla  133 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD------------EAQAAYYNKACCHAYREEGKKAAD  133 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3456666789999999999999999999998654421            012568999999999999999873

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.33  E-value=0.0057  Score=44.48  Aligned_cols=47  Identities=23%  Similarity=0.475  Sum_probs=41.5

Q ss_pred             hhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       326 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +-++++++|+.|+..+.+++...+.+               ..++.++|.|+.++++|.+|+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~   49 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEAL   49 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHH
Confidence            56799999999999999999875543               588899999999999999986

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.25  E-value=0.0082  Score=50.42  Aligned_cols=51  Identities=12%  Similarity=0.004  Sum_probs=32.7

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+.+.|+|++|+..|.+|+..-+.+               ...+.|++.|+.+++++++|+
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------------~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALMLDASH---------------PEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHH
Confidence            445555555555555555555555533222               356788888888888888876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.02  E-value=0.014  Score=56.79  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      +..++.+|+.+|..++|..|+..|++|+..-+.
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~   34 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN   34 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            456889999999999999999999999986543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.61  E-value=0.011  Score=36.46  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             HHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       340 ~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +|+|||++-+.+               ...|+|+|.+|..++++++|++
T Consensus         1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhcC
Confidence            488999865543               5889999999999999999975

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.53  E-value=0.032  Score=48.18  Aligned_cols=63  Identities=16%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...+..+...|..++..|+|.+|+..|++|+...+...            ....++.|+|.|+.++++|++|+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~   92 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKAL   92 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHH
Confidence            3556677788899999999999999999999998643211            02467899999999999999886

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.52  E-value=0.031  Score=47.35  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.+-..|..++..|+|..|.+.|+-.+.+-+..               ...+.||++|+-.+++|.+||
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI   89 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAI   89 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            3456677888889999888888888887754332               355666666666666666665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.41  E-value=0.017  Score=48.91  Aligned_cols=45  Identities=16%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +=..|+|.+|+..|.+|+.+-..+               ...+.|++.|++++++...|+
T Consensus        79 ~Q~~g~~~~AI~aY~~A~~L~~dd---------------p~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         79 CQAQKHWGEAIYAYGRAAQIKIDA---------------PQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHH
Confidence            335789999999999999865444               377899999999999988775

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.026  Score=56.00  Aligned_cols=58  Identities=29%  Similarity=0.338  Sum_probs=51.9

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....|...|+.||.++++.+|..|+..|.+++.+- .               -+..++|+|++|+.++.|..|+
T Consensus       220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~---------------~it~~~n~aA~~~e~~~~~~c~  277 (539)
T KOG0548|consen  220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-T---------------DITYLNNIAAVYLERGKYAECI  277 (539)
T ss_pred             HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-h---------------hhHHHHHHHHHHHhccHHHHhh
Confidence            55789999999999999999999999999999854 2               2788999999999999998886

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.34  E-value=0.0047  Score=59.99  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=50.8

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      ...||-+||+.+|.+|++.|+.||.-.+...          +.+|+.+++|+...+++.++|++||.
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dain  297 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAIN  297 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHh
Confidence            3579999999999999999999998876643          67899999999999999999999973

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.29  E-value=0.042  Score=33.21  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=26.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      +-+...|.-+|+.|+|++|+..|++|+.+.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4456789999999999999999999998654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.24  E-value=0.027  Score=42.34  Aligned_cols=51  Identities=25%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      -..|.-+|+.|+|.+|+..+++ +..-+.               ...++.-+|.|++++++|++|++
T Consensus        29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~---------------~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen   29 YNLAQCYFQQGKYEEAIELLQK-LKLDPS---------------NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHC-HTHHHC---------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH-hCCCCC---------------CHHHHHHHHHHHHHhCCHHHHHH
Confidence            3468999999999999999988 433221               13444456999999999999973

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.16  E-value=0.034  Score=52.21  Aligned_cols=64  Identities=28%  Similarity=0.380  Sum_probs=49.9

Q ss_pred             HHHHhHHHHhhhHHhc-ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          316 EAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      ..|..++..|.-+.+. ++++.|+..|++|+.+++...         .......|+.|+|.++.++++|.+|++
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~  176 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIE  176 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4577777788878788 899999999999999987533         234567899999999999999999973

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.06  E-value=0.061  Score=46.15  Aligned_cols=63  Identities=14%  Similarity=-0.012  Sum_probs=51.1

Q ss_pred             hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....+..+-..|..++..++|..|+..|++|+...+...            .....+.|+|.|+.+++++++|+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHH
Confidence            3445777788889999999999999999999998643210            12458899999999999999986

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.01  E-value=0.0088  Score=56.33  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      .+|+++.|++.|.++-++|..|.++.|+..|++|+.+-..               ...+|.++|.+++|+++|..||+
T Consensus       107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~---------------~a~l~~kr~sv~lkl~kp~~air  169 (377)
T KOG1308|consen  107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP---------------LAILYAKRASVFLKLKKPNAAIR  169 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc---------------hhhhcccccceeeeccCCchhhh
Confidence            5789999999999999999999999999999999985433               26889999999999999999874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.00  E-value=0.066  Score=43.76  Aligned_cols=62  Identities=19%  Similarity=0.138  Sum_probs=53.8

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...++....+.-+|-.+-..|+...|+.+|.+|+.+++.               +.+.|+|+|..+--+++..+|+
T Consensus        36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~AL   97 (175)
T KOG4555|consen   36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEAL   97 (175)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHH
Confidence            3456888888999999999999999999999999998865               3689999999998888887775

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.97  E-value=0.046  Score=44.69  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+...|..+++.|+|++|...|++++...
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   47 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYD   47 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            35566777777777777777777777643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=94.92  E-value=0.034  Score=41.78  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             cccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       331 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +++|+.|+..|.+++..-+...             ....+.++|.||+++++|.+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~   45 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAI   45 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHH
Confidence            5899999999999998665311             2457788999999999999997

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.036  Score=56.22  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +=..+..+|+.++|..|++.|.+.++++..+.     ..   ..+ ..+.-|||.|||++.+-+.|++
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-----~~---~~F-aK~qR~l~~CYL~L~QLD~A~E  415 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN-----YS---DRF-AKIQRALQVCYLKLEQLDNAVE  415 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh-----hh---hHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence            34678899999999999999999999987642     11   122 6777899999999999888863

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.82  E-value=0.065  Score=32.49  Aligned_cols=32  Identities=31%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      |..+-..|..++..++|.+|+..|++|+++-+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            34566789999999999999999999998643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.70  E-value=0.077  Score=51.40  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCC---hHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---DDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~---~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      ++.+..|-   ..+..+|++++|..|+.+|+-||.++.......   ......+-.+..-+...++.|||++++++-|++
T Consensus       173 Dkwl~vAL---~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn  249 (569)
T PF15015_consen  173 DKWLQVAL---KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN  249 (569)
T ss_pred             HHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence            44555543   468899999999999999999999986522111   123344556667777889999999999988863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.43  E-value=0.068  Score=33.18  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +...|+-+++.|+|++|+..|++||.+-
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4567999999999999999999988543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.41  E-value=0.07  Score=44.73  Aligned_cols=52  Identities=17%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....|..++..|+|.+|+..|.+++..-+..               ...+.|+|.|+.++++|.+|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            3456899999999999999999999754332               578899999999999999986

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.33  E-value=0.057  Score=39.49  Aligned_cols=27  Identities=37%  Similarity=0.522  Sum_probs=16.8

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ...|..++..|+|.+|+..++++++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~   30 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD   30 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            345566666666666666666666543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.15  E-value=0.087  Score=43.04  Aligned_cols=53  Identities=21%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....|.-+++.|+|.+|+..|.+++...+..               ...+.|+|.|+.+++++++|+
T Consensus        53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~  105 (135)
T TIGR02552        53 YWLGLAACCQMLKEYEEAIDAYALAAALDPDD---------------PRPYFHAAECLLALGEPESAL  105 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHH
Confidence            34567888899999999999999999865432               467799999999999999986

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.91  E-value=0.22  Score=36.75  Aligned_cols=61  Identities=16%  Similarity=0.008  Sum_probs=45.5

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHH
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA  374 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA  374 (388)
                      .+..|..+-.+|...=+.|+|++|+.+|..||.+|.. .....++..+..-.-++.=|+++|
T Consensus         2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA   63 (75)
T cd02684           2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA   63 (75)
T ss_pred             cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence            3567778888889999999999999999999999854 222344555555566677777774

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.86  E-value=0.1  Score=41.23  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=15.0

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.+++.|+.+++++.+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~   96 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHH
Confidence            45677888888888887775

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=93.81  E-value=0.17  Score=42.33  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=45.5

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..-..|+.+|..|+|.+|+..|++++..-..            ..++....+++|.|++.+++|++|+
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al  105 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEAL  105 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3445788999999999999999999974311            3456677889999999999999986

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.79  E-value=0.23  Score=36.85  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHHH
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      ..|..+-.+|.++=+.|+|++|+.+|.+|+.+|.. ....+++.....-.-++.-|.++|--
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~   65 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA   65 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35666777788899999999999999999999864 22224455566666777778888654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.77  E-value=0.15  Score=46.77  Aligned_cols=56  Identities=9%  Similarity=0.035  Sum_probs=45.5

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+-..|..+|++|+|..|+..|++.+...+..            .+.....+++|.||+++++|.+|+
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~   89 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQ   89 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHH
Confidence            35567888999999999999999999866542            123445789999999999999986

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.68  E-value=0.19  Score=44.78  Aligned_cols=58  Identities=22%  Similarity=0.176  Sum_probs=45.4

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+-..|..+|..|+|.+|+..|++.+...+..+            +.....+++|.|+.++++|..|+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~------------~a~~A~l~la~a~y~~~~y~~A~   62 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP------------YAPQAQLMLAYAYYKQGDYEEAI   62 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST------------THHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHcCCHHHHH
Confidence            55677889999999999999999999998776533            22345678999999999999986

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.64  E-value=0.31  Score=35.97  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHH
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAA  375 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~  375 (388)
                      +..|..+-..|.+.=+.|+|.+|..+|..|++++.. .....++..++.-..++.=|+++|-
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE   64 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            456667777788888899999999999999999865 2233556667777778888888773

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.38  E-value=0.34  Score=35.84  Aligned_cols=62  Identities=16%  Similarity=0.096  Sum_probs=43.8

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC--CCCCChHHHHHHHHHHHHhhhHHHHHH
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAACC  377 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~--~~~~~~~~~~~~~~~~~~~~~NlA~c~  377 (388)
                      +.|..+-..+-++=+.|+|.+|+..|..|+.+|-.  .....++.....-.-++.=|+++|-..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~L   67 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQAL   67 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888888999999999999999999854  222222333333366777788887643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.30  E-value=0.24  Score=39.03  Aligned_cols=55  Identities=11%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +-..|..+++.|+|.+|+..|.+++...+... ..           ...+.+++.|+++.++|..|+
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~~~A~   59 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKST-YA-----------PNAHYWLGEAYYAQGKYADAA   59 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-cc-----------HHHHHHHHHHHHhhccHHHHH
Confidence            34567777777777777777777776544322 11           244566777777777777765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=93.22  E-value=0.21  Score=45.08  Aligned_cols=59  Identities=20%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|..+++.|+|..|+..|.+++...+...            .....+.++|.|+.++++|++|+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~   90 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAI   90 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHH
Confidence            345667789999999999999999999998665421            12345788999999999999986

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.92  E-value=0.37  Score=38.78  Aligned_cols=65  Identities=17%  Similarity=0.053  Sum_probs=52.9

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCch
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ  384 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~  384 (388)
                      ++--.|+..|+.+++-+|+-.|++|+...+.....++.+.+++-.+++...-|||.-+-.+++-+
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~   67 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD   67 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH
Confidence            34567899999999999999999999988765444556677778888888999999887777643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=92.89  E-value=0.19  Score=49.44  Aligned_cols=55  Identities=22%  Similarity=0.391  Sum_probs=48.5

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+..++..+.++++|+.|+..-++|+...+..               ..++..||.||+++++|+.|+
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---------------f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---------------FETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHhcCCHHHHH
Confidence            5556778999999999999999999999977654               478899999999999999996

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=92.84  E-value=0.29  Score=35.31  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHHH
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      +..|..+-..|-.+=+.|+|+.|+..|++|+.+|... ...+++.....-.-++.-|+++|--
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~   64 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEK   64 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777778888999999999999999998541 1113344444455556666666643

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.70  E-value=0.68  Score=34.07  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLK  379 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~c~lK  379 (388)
                      +.|..+-.++-++=+.|+|++|+.+|++|+..|.. ....+|+....+-.-++.=|.|+|-..-+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~   68 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK   68 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777888888999999999999999998854 22233444455556777888888876543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.69  E-value=0.24  Score=46.39  Aligned_cols=77  Identities=23%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             ccCchhHHHHHHhHHHHhhhHHhcc-cHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518          308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (388)
Q Consensus       308 ~l~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~  385 (388)
                      .+++......+..+-..|..+++++ +|..|+..-++|.++++.. ...+.......+++.+++.-+|.||+..+.++.
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~  102 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYES  102 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHH
Confidence            5678888999999999999999999 9999999999999998652 111223345678899999999999999887654

It is also involved in sporulation [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=92.68  E-value=0.27  Score=49.85  Aligned_cols=65  Identities=17%  Similarity=0.012  Sum_probs=53.8

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..++..|+-+-..++|.+|+..|++|+.+++...+.+.+       -....+.|||..|.+.++|.+|.
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~-------~va~~l~nLa~ly~~~GKf~EA~  303 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP-------AVAATLNNLAVLYYKQGKFAEAE  303 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhccCChHHHH
Confidence            445666778999999999999999999999999865444432       34788999999999999999884

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=92.46  E-value=0.067  Score=52.71  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      ..|+.+|.++|.+|+.+.|..|+..|+||+++-+.
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn   36 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPN   36 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc
Confidence            35889999999999999999999999999985544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.31  E-value=0.16  Score=50.57  Aligned_cols=56  Identities=25%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK  381 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~  381 (388)
                      .-|..+.++..|++||..|-.+.+..|+..|.+|+.+...               +..||.|+|++++|.+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRk  422 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRK  422 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhh
Confidence            3567789999999999999999999999999999987654               3677888888887754

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.25  E-value=0.58  Score=34.45  Aligned_cols=62  Identities=16%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHHH
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      +..|..+-.+|.+.=+.|+|++|+..|.+|+.+|... ...++......-..++.=|+++|..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~   65 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK   65 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888899999999999999999999998541 1222334444555666667777543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.00  E-value=0.76  Score=33.71  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=43.6

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHH
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      +..|..+-..|...=+.|+|+.|+..|..|+..|.... ..+++.....-.-++.-|+++|.-
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~   65 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEF   65 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45666677778888788999999999999999885421 223344445555667777777543

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK11189 lipoprotein NlpI; Provisional

Probab=91.94  E-value=0.3  Score=46.22  Aligned_cols=52  Identities=13%  Similarity=0.134  Sum_probs=32.2

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...|.-+...|+|..|+..|.+|+++-+..               ...+.|++.|+..+++|++|+
T Consensus       101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189        101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            3444555555555555555555555432221               356788888888888888876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.85  E-value=0.55  Score=34.79  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...-++|-.+|.+.+.+.|++++++||+-+...+            .+-.++.=++.+|.-.|+|.+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L   63 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREML   63 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778899999999999999999999998665421            23444455677777777777665

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=0.14  Score=47.71  Aligned_cols=55  Identities=25%  Similarity=0.296  Sum_probs=45.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      |..+-..|--+||.|+|+.|+++|+.|+..--+.               ..+-.|+|+||.+.++|..|+
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasAL  198 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASAL  198 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHH
Confidence            4445567778899999999999999999754433               356689999999999999986

>PRK15331 chaperone protein SicA; Provisional

Probab=91.42  E-value=0.46  Score=40.56  Aligned_cols=56  Identities=13%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.+-..|-.+|..|+|.+|...|+-...+-..+               ...++.||+|+..+++|++|+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai   91 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKAC   91 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHH
Confidence            34556678899999999999999998776532222               245688888888888888886

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.33  E-value=0.34  Score=35.15  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=43.1

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-++..+++..|+..|.+++...+...               .++.++|.+++.++++..|+
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~   88 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---------------KAYYNLGLAYYKLGKYEEAL   88 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---------------hHHHHHHHHHHHHHhHHHHH
Confidence            355678888899999999999999998654421               56788999999999988875

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.04  E-value=0.79  Score=39.89  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      .+.-..+.+.|+.+++.|+++.|++.|.++..++-.            ...++-+++|+..+.+-+++|..+
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v   92 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHV   92 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHH
Confidence            344566778999999999999999999999988754            334566777777777777777654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.58  E-value=0.26  Score=51.40  Aligned_cols=67  Identities=28%  Similarity=0.377  Sum_probs=55.8

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--Cchhhh
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGIR  387 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~--~~~~ai  387 (388)
                      +.+.-+..+...+++||.+|.+.+|..|.-.|-.++.+++.+.           -....+.+|+|.|++.++  +|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhc
Confidence            4567789999999999999999999999999999999887532           234789999999998754  566654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=90.47  E-value=0.52  Score=49.37  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      .-+...|.-+|..|+|.+|+..|++|+...+
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            3445678888888888888888888887543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.40  E-value=0.66  Score=40.64  Aligned_cols=30  Identities=20%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      +..+...|..+++.|+|..|+..|.+++..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~   60 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEH   60 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            444445566666666666666666666654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=90.10  E-value=0.91  Score=40.89  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|..+|+.|+|..|+..|+++++..+..+            .....+.+++.++.+++++++|+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTP------------ATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCc------------chHHHHHHHHHHHHHcCCHHHHH
Confidence            568889999999999999999998765432            12467789999999999999986

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.07  E-value=0.59  Score=40.95  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=15.8

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.|++.|+.+++++.+|+
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~  155 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAE  155 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            45678888888888888775

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=90.04  E-value=0.63  Score=47.22  Aligned_cols=65  Identities=23%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.+..+.+.+..+=..++|+.|...|++|++++..-....       .-.....+.|||-+|+++++|++|.
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHH
Confidence            3466677778888889999999999999999987433222       1234688999999999999999985

>PRK11189 lipoprotein NlpI; Provisional

Probab=89.96  E-value=0.6  Score=44.13  Aligned_cols=55  Identities=13%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+-..|.-+.+.|++..|+..|++|+..-+..               ...|+|++.++.++++|++|+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            4456678999999999999999999999865432               478899999999999999986

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=89.84  E-value=1.9  Score=31.62  Aligned_cols=63  Identities=19%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHHH
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACC  377 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c~  377 (388)
                      +..|..+-.+|..+=+.|+|++|+..|.+|+..|.... ..+++.....-.-++.-|+++|-..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~l   68 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEI   68 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777789999999999999999986411 2233444444455566666665443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.45  E-value=0.85  Score=38.01  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=44.9

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+-..|-+.+++|+|..|+..++....-.+...            +.-...++++-+|.|.++|..|+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------------ya~qAqL~l~yayy~~~~y~~A~   67 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------------YAEQAQLDLAYAYYKQGDYEEAI   67 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------------ccHHHHHHHHHHHHHccCHHHHH
Confidence            4455678889999999999999988777665532            22355688999999999999986

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.25  E-value=2  Score=31.68  Aligned_cols=36  Identities=19%  Similarity=0.076  Sum_probs=30.8

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      ++.|..+-.+|+..=..|+|++|+..|..|+.++..
T Consensus         3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            346667777788888999999999999999999966

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.79  E-value=0.94  Score=27.09  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      +.+-..|.-+.+.|++..|+..|++|+++-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456778899999999999999999998643

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=88.44  E-value=0.96  Score=41.30  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=26.6

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSED  351 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~  351 (388)
                      .++..|..+|.+|+|..|+...+||...-+.+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d  133 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD  133 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence            34558999999999999999999999865443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.40  E-value=0.99  Score=28.19  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      |..+...|+.++..|+|.+|...|.+|+.+...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            456677899999999999999999999998754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.27  E-value=0.69  Score=47.26  Aligned_cols=57  Identities=16%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             cccHHHHHHHHHHHHhhhcCCC--------------CCChHHH-----HHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          331 NGKYERAGKKYNKAADCVSEDG--------------SFVDDEQ-----KLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       331 ~~~~~~A~~~Y~kal~~l~~~~--------------~~~~~~~-----~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .|+..+|.++|.+||+++..-.              .+.+...     -++----...++|||..|-.++++++||
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence            3777888888888887664311              0000000     0111123467899999999999999887

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.89  E-value=0.41  Score=28.81  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=17.3

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+|.|++.||+++++|++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~   21 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEAL   21 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHH
Confidence            47899999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=87.47  E-value=1.4  Score=41.01  Aligned_cols=55  Identities=11%  Similarity=0.110  Sum_probs=37.8

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +--.|.-+|..|+|..|+..|+++++..+..+.            ..-.+.+++.|+.+++++++|+
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------------~~dAl~klg~~~~~~g~~~~A~  237 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------------AADAMFKVGVIMQDKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------hhHHHHHHHHHHHHcCCHHHHH
Confidence            345677777777777777777777765544321            2345567888888888888875

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.90  E-value=6.4  Score=29.30  Aligned_cols=65  Identities=17%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC------CCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED------GSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~------~~~~~~~~~~~~~~~~~~~~NlA~c~lKl  380 (388)
                      +.|-..-+.|-.+=..|+.+.|+..|++|++.|...      .....++++..+.++-++..|+..+--++
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555655556689999999999999999641      13345788899999999988888776554

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=86.62  E-value=1.9  Score=36.93  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCc
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~  383 (388)
                      +..+...|.-+++.|+|..|+..|.+|+.+.+..               ...+.+++.|+.++++.
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCCh
Confidence            3456778999999999999999999999865432               35567888888887763

>PRK12370 invasion protein regulator; Provisional

Probab=86.61  E-value=1.3  Score=45.83  Aligned_cols=51  Identities=6%  Similarity=-0.130  Sum_probs=38.4

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+...|+|.+|+..|++|++.-+..               ...+.++|.+++.++++++|+
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPIS---------------ADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            345777788899999999999998865432               345677888888888888775

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=86.56  E-value=2  Score=34.82  Aligned_cols=54  Identities=19%  Similarity=0.060  Sum_probs=38.7

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -+.|..+-..|+..+|+..|++|+..-     .++       ..+..++.+++.++-.+|++++|+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~-------~~~~~a~i~lastlr~LG~~deA~   58 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAG-----LSG-------ADRRRALIQLASTLRNLGRYDEAL   58 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCc-------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345667778899999999999999732     111       123456677888888888887775

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.43  E-value=3.8  Score=33.08  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -..-..|......|-|.+|..-|++|+..-...+   .++.-....+-.-||.-||.++.+|++|++|+
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L   75 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECL   75 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHH
Confidence            3345667888899999999999999998765433   33333335566789999999999999999986

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=86.41  E-value=0.64  Score=49.64  Aligned_cols=59  Identities=24%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             hcccHHHHHHHHHHHHhhhcC--------------CCCCCh--HHHHHHHHHHH---HhhhHHHHHHHHccCchhhhC
Q 016518          330 KNGKYERAGKKYNKAADCVSE--------------DGSFVD--DEQKLVKSLRV---SCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       330 k~~~~~~A~~~Y~kal~~l~~--------------~~~~~~--~~~~~~~~~~~---~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      .++.+.+|+.+|.|+|+.-+.              ...+.+  +-...+++--.   ..++|+|.||+-+++|..||+
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq  701 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence            456789999999999986542              112222  22334444334   788999999999999999974

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=85.88  E-value=1  Score=45.46  Aligned_cols=57  Identities=21%  Similarity=0.053  Sum_probs=48.0

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +..-.-..|..+-|.++|..|+..|++||...+.+               ...|.-+|.||..+++++.||+
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------------~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------------ASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHHhcChHHHHH
Confidence            34445677888899999999999999999876654               5788999999999999999973

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=85.70  E-value=2.8  Score=35.73  Aligned_cols=61  Identities=11%  Similarity=-0.094  Sum_probs=42.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|++.+|+..|.+|+..-+..        .........++.|++..+.+++++..|+
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence            345677899999999999999999999863221        1122334555666666666888887664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=85.44  E-value=1.6  Score=41.69  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ..+++.-+.|+++|-+++|..|+..|..|+..-
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d   68 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD   68 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            356778889999999999999999999999743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.44  E-value=0.43  Score=48.08  Aligned_cols=65  Identities=18%  Similarity=0.298  Sum_probs=45.5

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCC----------hHHHHHHHHHH---------HHhhhHHHHHHHHccCc
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------DDEQKLVKSLR---------VSCWLNSAACCLKLKDY  383 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~----------~~~~~~~~~~~---------~~~~~NlA~c~lKl~~~  383 (388)
                      .-|--++-.++|.+|+.+|+.||..-+.+....          +--.+.+..++         +....||+.|++.++.|
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence            468888999999999999999998654322111          00112223322         44568999999999999


Q ss_pred             hhhh
Q 016518          384 QGIR  387 (388)
Q Consensus       384 ~~ai  387 (388)
                      ++|+
T Consensus       515 kEA~  518 (579)
T KOG1125|consen  515 KEAV  518 (579)
T ss_pred             HHHH
Confidence            9996

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.29  E-value=0.59  Score=28.86  Aligned_cols=20  Identities=15%  Similarity=0.011  Sum_probs=16.9

Q ss_pred             hhhHHHHHHHHccCchhhhC
Q 016518          369 CWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       369 ~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +|+|||.+|.++++|++|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~   20 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIE   20 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHH
Confidence            47899999999999999973

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=84.84  E-value=1.6  Score=46.79  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|+.++++|+|..|+..|+++++.-+..               ..++..++.+++++++|.+|+
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~   76 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND---------------AEARFLLGKIYLALGDYAAAE   76 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            3456777888899999999999999998754432               134444555555555555553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=84.50  E-value=2.6  Score=27.12  Aligned_cols=30  Identities=10%  Similarity=0.009  Sum_probs=25.3

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      ....|..+...|++++|++.|+++++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            345678889999999999999999997654

>smart00028 TPR Tetratricopeptide repeats

Probab=84.45  E-value=1.5  Score=24.56  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=24.1

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ....|.-++..++|+.|+..|+++++..
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            4567889999999999999999999753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=84.34  E-value=2.4  Score=37.46  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC---------------CC-ChHHHHHH------HHHHHHhhhHHHH
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG---------------SF-VDDEQKLV------KSLRVSCWLNSAA  375 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~---------------~~-~~~~~~~~------~~~~~~~~~NlA~  375 (388)
                      +......|.-+...|+|..|+..|.+|+++-+.+.               .. .++-...+      ..-....++|+|.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            45566678888889999999999999988664311               00 11111111      1123567889999


Q ss_pred             HHHHccCchhhh
Q 016518          376 CCLKLKDYQGIR  387 (388)
Q Consensus       376 c~lKl~~~~~ai  387 (388)
                      +++++++|++|+
T Consensus       153 ~~~~~g~~~~Ai  164 (198)
T PRK10370        153 DAFMQADYAQAI  164 (198)
T ss_pred             HHHHcCCHHHHH
Confidence            999999999987

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.31  E-value=3.1  Score=41.16  Aligned_cols=67  Identities=19%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl  380 (388)
                      .+......-+.|-++|+.|+|.+|+..|+..|..+......++++..+++++...|.-=+-++.+.+
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl  266 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIEL  266 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555799999999999999999999998877666677778888887777765555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=83.71  E-value=2.5  Score=37.35  Aligned_cols=16  Identities=6%  Similarity=0.021  Sum_probs=7.9

Q ss_pred             HHhhhHHHHHH-HHccC
Q 016518          367 VSCWLNSAACC-LKLKD  382 (388)
Q Consensus       367 ~~~~~NlA~c~-lKl~~  382 (388)
                      ..+++|+|.|+ ...++
T Consensus       107 ~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370        107 AELYAALATVLYYQAGQ  123 (198)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            34455555553 44444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.68  E-value=2.6  Score=38.71  Aligned_cols=57  Identities=25%  Similarity=0.294  Sum_probs=45.9

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.|.++|+.|+|.+|++.|+++...+....         ...+...+..++..|+.++++.+..+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l  238 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYL  238 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3789999999999999999999976554321         24566788889999999999987654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=82.91  E-value=2.9  Score=39.32  Aligned_cols=66  Identities=15%  Similarity=0.065  Sum_probs=45.8

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC--CCChHHHHHHHHHHHHhhhHHHH
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--SFVDDEQKLVKSLRVSCWLNSAA  375 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~--~~~~~~~~~~~~~~~~~~~NlA~  375 (388)
                      +...-+..|..+-..+.+.=+.++|.+|.+.|..|+.|+-..-  ....+-.++.-.-+..=|+++|.
T Consensus         2 s~~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAE   69 (439)
T KOG0739|consen    2 SNGSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAE   69 (439)
T ss_pred             CcchHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHH
Confidence            3334677788888888888899999999999999999984311  11112233444556667888875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.85  E-value=3  Score=44.15  Aligned_cols=34  Identities=18%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      .++-++.-|+.+|++|+|+.|...|-+++.+++.
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~  400 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP  400 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence            3556788999999999999999999999999975

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.46  E-value=1  Score=28.13  Aligned_cols=21  Identities=19%  Similarity=0.050  Sum_probs=18.0

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+++|+|.+|..+++|.+|+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~   22 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEAL   22 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhh
Confidence            467899999999999999986

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=82.21  E-value=2.5  Score=46.74  Aligned_cols=69  Identities=7%  Similarity=0.036  Sum_probs=40.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCC-------------CChHHHHHHH------HHHHHhhhHHHHHHHH
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDEQKLVK------SLRVSCWLNSAACCLK  379 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-------------~~~~~~~~~~------~~~~~~~~NlA~c~lK  379 (388)
                      ..+...|.-+.+.|++.+|+..|.+|+..-+....             ..++-...++      --...++.|+|.|+.+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44556677777777777777777777765432110             0000000111      0124568899999999


Q ss_pred             ccCchhhh
Q 016518          380 LKDYQGIR  387 (388)
Q Consensus       380 l~~~~~ai  387 (388)
                      ++++++|+
T Consensus       690 lGd~~eA~  697 (987)
T PRK09782        690 LDDMAATQ  697 (987)
T ss_pred             CCCHHHHH
Confidence            99988875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=81.99  E-value=3.5  Score=31.60  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=39.7

Q ss_pred             HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.++|..|+....+..++.........      ........+|+|.++..+|++++|+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~   61 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEAL   61 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45789999999999999987654322111      2223445789999999999999986

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=81.89  E-value=2.4  Score=42.08  Aligned_cols=49  Identities=24%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             HhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .|.-+++.+++.+|+..+++|+...+..               ..+..|+|..++|.+++++||
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHH
Confidence            3455678999999999999999876653               478899999999999999887

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.38  E-value=0.73  Score=45.26  Aligned_cols=29  Identities=28%  Similarity=0.542  Sum_probs=25.3

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      ..+-.+||-.|.+|+|.+|...|+.||+-
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            34567899999999999999999999974

>PRK15331 chaperone protein SicA; Provisional

Probab=80.99  E-value=1.4  Score=37.64  Aligned_cols=47  Identities=15%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             hhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       326 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      --+-..++|+.|+..|..|..+-..++               .-...++.||+.+++...|+
T Consensus        79 a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---------------~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         79 AVCQLKKQFQKACDLYAVAFTLLKNDY---------------RPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCC---------------CccchHHHHHHHhCCHHHHH
Confidence            333456889999999999998654444               22467899999999988875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=80.35  E-value=2.9  Score=47.38  Aligned_cols=53  Identities=13%  Similarity=0.024  Sum_probs=42.7

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|+.+...|++.+|+..|++|++.-+..               ..++.++|.+|.+++++++|+
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPGS---------------VWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            45568889999999999999999999865432               245678888888888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-47
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		5e-47
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		5e-38
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		9e-38
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		5e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-24
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-19
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-18
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		4e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		8e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		9e-07
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-15
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-15
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-15
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-14
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		1e-14
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		2e-14
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		3e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		4e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-14
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		5e-14
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-07
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		5e-14
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-07
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		5e-14
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		2e-07
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		6e-14
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		2e-07
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-13
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-13
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		5e-13
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		6e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		8e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-07
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		8e-12
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-07
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		2e-11
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		1e-05
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		4e-11
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		4e-11
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		7e-11
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		1e-10
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		1e-10
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-10
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		1e-10
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		2e-10
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-10
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-10
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		3e-10
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		4e-10
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		5e-10
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		6e-10
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		1e-09
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-09
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		2e-09
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-09
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		3e-09
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-09
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		1e-05
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		1e-05
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		1e-05
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		3e-05
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		1e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 184/337 (54%), Gaps = 55/337 (16%)
Query: 35  LKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTF 94
           +KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   F
Sbjct: 16  MKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKF 75
Query: 95  KLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           KLG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW
Sbjct: 76  KLGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSW 133
Query: 154 ITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKD 213
            +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD
Sbjct: 134 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD 191
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
                                           +   L +   TMKK E  ++ +  +YGF
Sbjct: 192 ------------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGF 221
Query: 274 GNV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKI 315
           G +   A  +   +P  A L  ++E++ +                +KE   +E  N+G +
Sbjct: 222 GEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAV 281
Query: 316 EAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                  K ++G +  K G  E+   ++    + V E
Sbjct: 282 VTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 318

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 183/336 (54%), Gaps = 55/336 (16%)
Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118
Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD 
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD- 175
Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                                          +   L +   TMKK E  ++ +  +YGFG
Sbjct: 176 -----------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206
Query: 275 NV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKIE 316
            +   A  +   +P  A L  ++E++ +                +KE   +E  N+G + 
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVV 266
Query: 317 AA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                 K ++G +  K G  E+   ++    + V E
Sbjct: 267 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 302

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 170/340 (50%), Gaps = 37/340 (10%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+ +    DL +DG
Sbjct: 90  WDIGVATMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
               +  +    + E K  +S  ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  154 bits (388), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 171/340 (50%), Gaps = 37/340 (10%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMK+ E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 90  WDIGVATMKRGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
               +  +    + E K  +S  ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 37/267 (13%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 150
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 151 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 192
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E + +D             +  G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 193 TVGEGEDHD-------------IPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 237
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMN 310
            I   A+L YEV +  F K K  WEM+
Sbjct: 238 GIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 127/267 (47%), Gaps = 39/267 (14%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 109
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLS--K 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL+  +
Sbjct: 110 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 166
Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P               +G +V    E  +E Y KD  +  R  
Sbjct: 167 DGGIIRRIQTRGEGYAKP--------------NEGAIV----EVALEGYYKDKLFDQREL 208
Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 209 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 253
Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWE 308
              IP  A+L YE+ +  F K K  WE
Sbjct: 254 KFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 33/226 (14%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
            + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  + 
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R     + E +  D             +  GL+R    M+K E +IV +   Y FG+V 
Sbjct: 62  QRELRFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
             ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
             +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 33/226 (14%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
            + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  + 
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R     + E +  D             +  GL+R     +K E +IV +   Y FG+V 
Sbjct: 62  QRELRFEIGEGENLD-------------LPYGLERAIQRXEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
             ++   IP  A+L YE+ +  F K K  WE N++ K+E +   KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
             +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           ++ ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V  G
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVS 152
            D G+ TM   E A+  FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 83  WDQGVATMTLGEKAL--FTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  G
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLSKD 162
            D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W +  D+S D
Sbjct: 73  WDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAEDISPD 128

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y+  LE+GT F+     G+Q   F      VI G D   ATM K E A  TI  +YG+
Sbjct: 38  VHYVGTLENGTKFDSSRDRGDQ-FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGY 96
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305
           G+  +      IP  A L +EVE+ ++  E +
Sbjct: 97  GDAGSP---PKIPGGATLIFEVELFEWSAEDI 125

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 94  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 89  WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 84  PPQLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 103
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 104 PPQLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 87
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 88  PPQLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +L+ G   + + P+ G+EVT+HYVG L   G  FDS+R+R  P  F LG G+V
Sbjct: 14  DGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEV 73
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M K E C+V    L S+  +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  IKGWDICVASMTKNEKCSV---RLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V L++DGG+VK IL KGE                            P++G E     V Y
Sbjct: 9   VHLTEDGGVVKTILRKGEGGEE----------------------NAPKKGNEV---TVHY 43
Query: 217 IARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+    +   P +F   + +VI G D   A+M K E   V ++ +YG+G 
Sbjct: 44  VGKLESSGKVFDSS-RERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGE 102
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 103 EGCGE---SIPGNSVLIFEIELISF 124

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           TP  G + Y   V Y  +L +G  F+   +D  +P  F   + QVI   D   ATMKK E
Sbjct: 50  TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 105
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 106 ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD 242
           D  ++K    +G+G    +TP  G + Y   V Y  +L +G  F+   +D  +P  F   
Sbjct: 34  DRGVLKIVKRVGNG---EETPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLG 86
Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           + QVI   D   ATMKK E   +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G    + E+GE   S    D  ++K    +G+G    +TP  G + Y   V Y  +L +G
Sbjct: 1   GAPATVAEQGEDITS--KKDRGVLKIVKRVGNGE---ETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G+  +   L 
Sbjct: 53  KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
            IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G    + E+GE   S    D  ++K    +G+G    +TP  G + Y   V Y  +L +G
Sbjct: 1   GAPATVTEQGEDITS--KKDRGVLKIVKRVGNGE---ETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G+  +   L 
Sbjct: 53  KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
            IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KF S++DR DP  F LG G V  G 
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 234 EQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLY 292
           +QP+E +   E++ +AGL    A+MK  E A+V +  E  +G  E       +P  A L 
Sbjct: 92  QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLL 150
Query: 293 YEVEMMDF--IKE-KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349
           YEVE++ F   KE K   +M  + +I AA R+K +GN LFK  K E A ++Y  A   + 
Sbjct: 151 YEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 350 EDGSF--VDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
           +D  F      Q +  +++  C LN AAC +KLK Y
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G D GI  +   E A   
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA--R 79
Query: 122 FTLPSELRFGVEGRDSL-PPNSVVQFEVELV 151
            T+P    +G  G   L PPNS + F+VEL+
Sbjct: 80  LTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 84  PPQLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 50  KKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKLGTGQVA 102
           K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+G G+V 
Sbjct: 5   KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
            G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 65  RGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 216 YIARLEDGTVFEK------KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINH 269
           Y   L+DGTVF+       K     +PL F     +VI G D    TM K E A + I  
Sbjct: 27  YTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP 86
Query: 270 EYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           E+ +G  + + D A IP  AKL +EVE++D 
Sbjct: 87  EWAYGK-KGQPD-AKIPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M + E       +
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR--KLVI 66
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           PSEL +G  G    +P  + + FEVEL+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  GL+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M  RE   +   +P +L +GV G   + PP S ++F+VEL+S        KDGG
Sbjct: 95  TEALQLM--REGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------KDGG 145
Query: 165 I------VKKILEKGERD 176
                  V +IL K E D
Sbjct: 146 KGRTAEEVDEILRKAEED 163

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L +G KFDS+RDR  P  F++G  +V  G +
Sbjct: 1   GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            G   M   + A  T T   ++ +G  G    +PPN+ + F+VEL++ 
Sbjct: 61  EGAAQMSLGQRAKLTCT--PDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PPN+ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++   L  G +   P+ G    +HY GTL DG  FDS+R R  P  F +G G+V  G D
Sbjct: 2   GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A        +  +G  G    +PPN+ + F+VEL+
Sbjct: 62  EGVAQMSVGQRA--KLVCSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 3   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 63  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G + G+  M   + A   
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRA--K 73
Query: 122 FTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A  T +   +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTIS--PDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGI---------ITMKKR 115
           G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G D GI         +T  KR
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 116 ECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELV 151
                T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 90  -----TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RD+  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 30  SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 86
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 87  TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 44  GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTK-FDSTRDRYDPLTFKLGTGQV 101
           G+ G+ K +++ G  D   P+    V + Y G L    + FDS   R  P   KLG    
Sbjct: 24  GDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT 81
Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWI 154
             G++ G+++M++ E A F F       +G  G   L PPN+ V FE+EL+ ++
Sbjct: 82  LWGMELGLLSMRRGELARFLFK--PNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 65  GDEVTIHYVGTL-LDGTKFDSTRDRYD--PLTFKLGTGQVATGLDNGIITM---KKRECA 118
           GD + +HY G L  DG+ F ST    +  P+ F LG  +   G D G+  M   +KR+  
Sbjct: 32  GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK-- 89
Query: 119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
                +P  L +G EG+  +PP S + F ++L+
Sbjct: 90  ---LIIPPALGYGKEGKGKIPPESTLIFNIDLL 119

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L  +
Sbjct: 31  VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKT--TFSLEPD 88
Query: 128 LRFGVEGRDSLPPNSVVQF------EVELVSWITVVDLSKDGGIVKKI 169
             FGV   D +   S  +F      E+  +   T +D S+  G++++I
Sbjct: 89  AAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREI 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-75
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-64
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	8e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	9e-57
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-18
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-40
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-22
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	8e-38
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	1e-12
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-35
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-12
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-34
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-10
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-34
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-19
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	7e-34
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-12
2ppn_A	107	FK506-binding protein 1A; high resolution protein	8e-34
2ppn_A	107	FK506-binding protein 1A; high resolution protein	5e-11
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	4e-33
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-12
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	9e-33
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	6e-10
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-32
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	6e-18
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-32
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-17
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	3e-32
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-17
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-32
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-11
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	9e-32
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-12
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-30
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-10
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	8e-30
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	6e-29
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	5e-08
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-28
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	2e-08
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	5e-28
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-08
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	5e-27
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	6e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-24
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	7e-23
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	6e-04
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-22
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-21
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	3e-20
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-16
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	8e-14
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	2e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-10
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-10
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-10
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	5e-10
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-04
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-09
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	9e-09
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	3e-07
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	4e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  238 bits (609), Expect = 7e-75
 Identities = 112/382 (29%), Positives = 176/382 (46%), Gaps = 52/382 (13%)

Query: 7   MTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGD 66
           MT ++GA     + EE     V E    +         + G+ K + + G   +TP  GD
Sbjct: 1   MTTDEGAK----NNEESPTATVAEQGEDITS-----KKDRGVLKIVKRVGNGEETPMIGD 51

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
           +V +HY G L +G KFDS+ DR +P  F LG GQV    D G+ TMK+ E          
Sbjct: 52  KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEIC--HLLCKP 109

Query: 127 ELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
           E  +G  G    +P N+ + FE+EL+ +    DL +DGGI+++   KGE  ++P +   V
Sbjct: 110 EYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATV 168

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT---D 242
            +  +                                G +F+       + + F     +
Sbjct: 169 EIHLEGRC----------------------------GGRMFD------CRDVAFTVGEGE 194

Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
           +  +  G+D+    M++EE  I+ +   YGFG  EA +    I   A+L YEV +  F K
Sbjct: 195 DHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 252

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
            K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312

Query: 363 KSLRVSCWLNSAACCLKLKDYQ 384
           +S  ++ +LN A C LKL++Y 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYT 334

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  208 bits (530), Expect = 3e-64
 Identities = 118/292 (40%), Positives = 157/292 (53%), Gaps = 37/292 (12%)

Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E     FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGE--NALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+                        
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYE------------------------ 154

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
              ARLEDGTV         + +EF   +  +   L +   TMKK E  ++ +  +YGFG
Sbjct: 155 ---ARLEDGTVV-----SKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206

Query: 275 N--VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEE 324
                A  +   +P  A L  ++E++ +       +     K      +  E
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYE 258

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  191 bits (487), Expect = 8e-58
 Identities = 93/265 (35%), Positives = 135/265 (50%), Gaps = 40/265 (15%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT    +      + F +  G +   
Sbjct: 126 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE----GVEFTVKDGHLCPA 181

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E       +  +  FG  GR       ++PPN+ +  ++ELVSW TV +
Sbjct: 182 LAKAVKTMKKGEKV--LLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 239

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +   V                            V    
Sbjct: 240 IGDDKKILKKVLKEXEGYERPNEGAVV---------------------------TVKITG 272

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 273 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 332

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKE 303
           K+D A +P  + + YEVE++ F+K+
Sbjct: 333 KQD-AIVPPNSTVIYEVELVSFVKD 356

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  186 bits (473), Expect = 9e-57
 Identities = 85/306 (27%), Positives = 128/306 (41%), Gaps = 43/306 (14%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDE 67
            L    +    +  +        +  P++  +     + G+ K + + G   + P  GD 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +HY G LLDGTKFDS+ DR D  +F LG G+V    D  I TMK  E      T   E
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC--HITCKPE 130

Query: 128 LRFGVEGR-DSLPPNSVVQFEVELVS-WITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
             +G  G    +PPN+ + FEVEL       +   +DGGI+++I  +GE  A P +   V
Sbjct: 131 YAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIV 190

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
            V  +    D                             +F+++       L F   E +
Sbjct: 191 EVALEGYYKDK----------------------------LFDQR------ELRFEIGEGE 216

Query: 246 VI---AGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
            +    GL+R    M+K E +IV +   Y FG     ++   IP  A+L YE+ +  F K
Sbjct: 217 NLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEK 274

Query: 303 EKVPWE 308
            K  WE
Sbjct: 275 AKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 42/196 (21%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 133 EGRDSLPPNSVVQFEVELVSWITV------------VDLSKDGGIVKKILEKGERDASPG 180
                L P        E+ +  +             +   +D G++K I  +G     P 
Sbjct: 9   HHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPM 68

Query: 181 DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240
             D V V Y                              L DGT F+    D +    F 
Sbjct: 69  IGDRVFVHY---------------------------TGWLLDGTKFDSS-LDRKDKFSFD 100

Query: 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
             + +VI   D   ATMK  E   +T   EY +G   +      IP  A L +EVE+ +F
Sbjct: 101 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG---SAGSPPKIPPNATLVFEVELFEF 157

Query: 301 IKEKVPWEMNNQGKIE 316
             E +  E +      
Sbjct: 158 KGEDLTEEEDGGIIRR 173

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  162 bits (411), Expect = 6e-47
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 39/231 (16%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
             + +DGGI+++I  +GE  A P +   V V  +    D                     
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD----------------- 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGF 273
                            ++ L F   E +   +  GL+R    M+K E +IV +   Y F
Sbjct: 62  -----------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAF 104

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGK 333
           G+V   ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GK
Sbjct: 105 GSVG--KEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK 162

Query: 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           Y++A  +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ + 
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ-- 100
             + GI +++   G  +  P  G  V +   G   D   FD        L F++G G+  
Sbjct: 22  EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQ-----RELRFEIGEGENL 75

Query: 101 -VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITVV 157
            +  GL+  I  M+K E ++    L     FG  G++    PPN+ +++E+ L S+    
Sbjct: 76  DLPYGLERAIQRMEKGEHSI--VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 133

Query: 158 DLSK-----DGGIVKKILEKGERDASPGDLDEVLVKYQ 190
           +  +            + E+G      G   + L++Y+
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYK 171

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  144 bits (365), Expect = 3e-40
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 35/244 (14%)

Query: 147 EVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEG 206
           E  +   +       D  + K+I+++G   + P       + Y+                
Sbjct: 33  EGNVPPKVDSEAEVLDEKVSKQIIKEGH-GSKPSKYSTCFLHYR---------------- 75

Query: 207 VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIV 265
                      A  ++     +  +  +QP+E +   E++ +AGL    A+MK  E A+V
Sbjct: 76  -----------AWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124

Query: 266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP---WEMNNQGKIEAAGRKK 322
            +  E  +G  E       +P  A L YEVE++ F + K      +M  + +I AA R+K
Sbjct: 125 HVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRK 183

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSF--VDDEQKLVKSLRVSCWLNSAACCLKL 380
            +GN LFK  K E A ++Y  A   + +D  F      Q +  +++  C LN AAC +KL
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243

Query: 381 KDYQ 384
           K Y 
Sbjct: 244 KRYD 247

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 95.9 bits (238), Expect = 2e-22
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 4   ESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPE 63
               T ++ + +              E   P KV  E  + +  + K+++K G     P 
Sbjct: 7   HQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPS 65

Query: 64  FGDEVTIHYVGTLLDGT-KFDSTRDRYDPLTFKLG-TGQVATGLDNGIITMKKRECAVFT 121
                 +HY     +   KF+ T     P+   LG   +   GL  G+ +MK  E A   
Sbjct: 66  KYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--L 123

Query: 122 FTLPSELRFGVEGRDS---LPPNSVVQFEVELVSW 153
             +  EL +G EG  S   +PP + + +EVE++ +
Sbjct: 124 VHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  132 bits (333), Expect = 8e-38
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITV-VDLSK 161
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W    +   +
Sbjct: 72  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDISPDR 129

Query: 162 DGGIVK 167
           DG I++
Sbjct: 130 DGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 43/152 (28%), Positives = 59/152 (38%), Gaps = 31/152 (20%)

Query: 160 SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIAR 219
            KDGG++K I ++G+    P     V V Y      GT                      
Sbjct: 11  KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYV-----GT---------------------- 43

Query: 220 LEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK 279
           LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G     
Sbjct: 44  LENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG---DA 99

Query: 280 RDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN 311
                IP  A L +EVE+ ++  E +  + + 
Sbjct: 100 GSPPKIPGGATLIFEVELFEWSAEDISPDRDG 131

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  124 bits (314), Expect = 4e-35
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV  
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
             D G+ TMKK E          E  +G  G    +P N+ + FE+EL+ +
Sbjct: 77  AWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V                            V Y
Sbjct: 13  ITSKKDRGVLKIVKRVGNGEETPMIGDKV---------------------------YVHY 45

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 46  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 102

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 103 -SAGSLPKIPSNATLFFEIELLDFKGE 128

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  122 bits (309), Expect = 2e-34
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
              +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+  
Sbjct: 65  WDVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           VK   +  GDG    K   + V      + Y   LE+G  F+    D   P +      Q
Sbjct: 8   VKIDRISPGDGATFPK-TGDLVT-----IHYTGTLENGQKFDSS-VDRGSPFQCNIGVGQ 60

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
           VI G D     +   E A +TI   Y +G    +     IP  + L ++VE++ 
Sbjct: 61  VIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELLK 111

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  122 bits (309), Expect = 2e-34
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 32  AAPLKVGEERG--LGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDR 88
            +    GEE    LGN  ++KK L  G      P  G  VT+H   +L +GT+       
Sbjct: 1   GSSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP-- 58

Query: 89  YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS--LPPNSVVQF 146
              L F LG   V   LD  +  M   E      T  S+  +G +G  S  +PP++ +  
Sbjct: 59  --ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADSKYCYGPQGSRSPYIPPHAALCL 114

Query: 147 EVELVSWITVVDLSKDG 163
           EV L + +   DL   G
Sbjct: 115 EVTLKTAVDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 35/149 (23%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 11  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 45  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 98

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
             ++     IP  A L  EV +   +   
Sbjct: 99  QGSR--SPYIPPHAALCLEVTLKTAVDRP 125

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  122 bits (307), Expect = 7e-34
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
           +  E       A   +    +   + G+ K + + G   +TP  GD+V +HY G L +G 
Sbjct: 12  KNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK 69

Query: 81  KFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLP 139
           KFDS+ DR +P  F LG GQV    D G+ TMKK E          E  +G  G    +P
Sbjct: 70  KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIP 127

Query: 140 PNSVVQFEVELVSW 153
            N+ + FE+EL+ +
Sbjct: 128 SNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V V                            Y
Sbjct: 29  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------Y 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 62  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 118

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 119 -SAGSLPKIPSNATLFFEIELLDFKGE 144

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  120 bits (303), Expect = 8e-34
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 58.3 bits (142), Expect = 5e-11
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           V+ + +  GDG    K   +        V Y   LEDG  F+    D  +P +F+  +++
Sbjct: 2   VQVETISPGDGRTFPK-RGQTCV-----VHYTGMLEDGKKFDSS-RDRNKPFKFMLGKQE 54

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G +   A M   + A +TI+ +Y +G   A      IP  A L ++VE++  
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYG---ATGHPGIIPPHATLVFDVELLKL 106

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  119 bits (301), Expect = 4e-33
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQVA 102
           G+ G+ K +++ G   D       V + Y G L      FDS   R  P   KLG     
Sbjct: 24  GDRGVLKDVIREG-AGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITL 82

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
            G++ G+++M++ E A   F       +G  G    +PPN+ V FE+EL+ ++
Sbjct: 83  WGMELGLLSMRRGELA--RFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
            ++D+S D G++K ++ +G           VLVKY   L                     
Sbjct: 18  RMLDISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHM------------------ 58

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                      F+   Y  + P      E+  + G++    +M++ E A       Y +G
Sbjct: 59  --------DRPFDSN-YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYG 109

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFI 301
            +        IP    + +E+E++DF+
Sbjct: 110 TLGCP---PLIPPNTTVLFEIELLDFL 133

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  118 bits (298), Expect = 9e-33
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           + ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V  G 
Sbjct: 24  AQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGW 83

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+ TM   E A   FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 84  DQGVATMTLGEKA--LFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
              + KK+L  G+    P    +V V Y      G                         
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYD-----GR----------------------FP 55

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DG  F+       +P +F     +VI G D+  ATM   E A+ TI ++  +G       
Sbjct: 56  DGKQFDSS-RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP-- 112

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  A L +EVE++ 
Sbjct: 113 -PVIPPKATLVFEVELLA 129

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  117 bits (296), Expect = 1e-32
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 43  LGNSGIKKKLLKNG-VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQV 101
           LGN  ++KK L  G      P  G  VT+H   +L +GT+          L F LG   V
Sbjct: 10  LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDV 65

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
              LD  +  M   E A    T  S+  +G +GR   +PP++ +  EV L + +
Sbjct: 66  IQALDLSVPLMDVGETA--MVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 78.1 bits (193), Expect = 6e-18
 Identities = 33/146 (22%), Positives = 46/146 (31%), Gaps = 36/146 (24%)

Query: 157 VDLSKDGGIVKKILEKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 7   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 40

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 41  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 94

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFI 301
                    IP  A L  EV +   +
Sbjct: 95  QGRS---PYIPPHAALCLEVTLKTAV 117

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  119 bits (301), Expect = 1e-32
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
              EP +  E   P KV  E  + +  + K+++K G     P       +HY     +  
Sbjct: 26  VHSEPSQ--EGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPSKYSTCFLHYRAWTKNSQ 82

Query: 81  -KFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL 138
            KF+ T     P+   LG   +   GL  G+ +MK  E A     +  EL +G EG  S 
Sbjct: 83  HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--LVHVGWELAYGKEGNFSF 140

Query: 139 ---PPNSVVQFEVELVSWITVVDLSKDG 163
              PP + + +EVE++ +    +     
Sbjct: 141 PNVPPMADLLYEVEVIGFDETKEGKARS 168

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 78.7 bits (194), Expect = 2e-17
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  + K+I+++G   + P       + Y+    +             F   + +      
Sbjct: 48  DEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWTKNSQHK---------F---EDT------ 88

Query: 222 DGTVFEKKGYDGEQPLEF-ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                    +  +QP+E  +  E++ +AGL    A+MK  E A+V +  E  +G  E   
Sbjct: 89  ---------WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNF 138

Query: 281 DLATIPSCAKLYYEVEMMDFIKE---KVPWEMNNQGKIEAA 318
               +P  A L YEVE++ F +    K   +M  + +I AA
Sbjct: 139 SFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  117 bits (296), Expect = 3e-32
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVD-WDTPEFGD 66
             E+      +  E     E   + AP        LGN  ++KK L  G      P  G 
Sbjct: 5   PAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQ 64

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
            VT+H   +L +GT+          L F LG   V   LD  +  M   E      T  S
Sbjct: 65  VVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADS 118

Query: 127 ELRFGVEGRDS--LPPNSVVQFEVELVSWITV 156
           +  +G +G  S  +PP++ +  EV L + + +
Sbjct: 119 KYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL 150

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 35/155 (22%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 37  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 70

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 71  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG- 123

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
                    IP  A L  EV +   +  +     +
Sbjct: 124 -PQGSRSPYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  116 bits (292), Expect = 6e-32
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 44  GNSGIKKKLLKNGVDWD--TPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQ 100
            + G+ K +LK G + +   P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+
Sbjct: 14  ADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGE 73

Query: 101 VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           V  G D  + +M+K E       + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  VIKGWDICVSSMRKNEKC--LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 32/150 (21%)

Query: 157 VDLSKDGGIVKKILEKGERD--ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           V+L+ DGG++K IL+KG+      P   +EV V Y   L                     
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES------------------- 50

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                   G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G
Sbjct: 51  -------TGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYG 102

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               +    +IP  + L +E+E++ F + +
Sbjct: 103 ---DEGCGESIPGNSVLLFEIELLSFRELE 129

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  115 bits (290), Expect = 9e-32
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDS-------TRDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW 153
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
                K IL+KG++   P   D V   Y   L DGT           F   D +      
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGT----------VF---DTNI----- 44

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                  K     +PL F     +VI G D    TM K E A + I  E+ +G  +  + 
Sbjct: 45  ---QTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQP 99

Query: 282 LATIPSCAKLYYEVEMMDF 300
            A IP   KL +EVE++D 
Sbjct: 100 DAKIPPNTKLIFEVELVDI 118

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  111 bits (279), Expect = 2e-30
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
                GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M + E   
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR- 62

Query: 120 FTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDL 159
               +PSEL +G  G    +P  + + FEVEL+      +L
Sbjct: 63  -KLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  +LEDGT F+       QP  F     QVI G D+    M + E   + I  E G+
Sbjct: 14  MHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGY 72

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           G   A      IP  A L +EVE++   +  
Sbjct: 73  GERGAP---PKIPGGATLVFEVELLKIERRT 100

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  110 bits (278), Expect = 8e-30
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G        G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 28  SGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 86

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+ 
Sbjct: 87  DEGVQGMKVGG--VRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 30  LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 79

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 80  GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  111 bits (278), Expect = 6e-29
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 22  EEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTK 81
           + E  ++IE+      G       SG+K + L  G        G  V++HY G L DG K
Sbjct: 80  DMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQK 138

Query: 82  FDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPP 140
           FDS++DR DP  F LG G V  G D G+  MK         T+P +L +G  G    +PP
Sbjct: 139 FDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVR--RLTIPPQLGYGARGAAGVIPP 196

Query: 141 NSVVQFEVELVS 152
           N+ + FEVEL+ 
Sbjct: 197 NATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 106 LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 155

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 156 GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  106 bits (266), Expect = 4e-28
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 46  SGIKKKLLKNGVDW-DTPEFGDEVTIHYVGTL-LDGTKFDS--TRDRYDPLTFKLGTGQV 101
             +K ++L+         + GD + +HY G L  DG+ F S    +   P+ F LG  + 
Sbjct: 12  PEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEA 71

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G D G+  M   E       +P  L +G EG+  +PP S + F ++L+ 
Sbjct: 72  LKGWDQGLKGMCVGEKR--KLIIPPALGYGKEGKGKIPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 214 VSYIARLE-DGTVFEK-KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEY 271
           V Y   LE DG++F     ++  QP+ F     + + G D+    M   E   + I    
Sbjct: 37  VHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPAL 96

Query: 272 GFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP 306
           G+G    K     IP  + L + +++++      P
Sbjct: 97  GYG----KEGKGKIPPESTLIFNIDLLEI--RNGP 125

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  105 bits (265), Expect = 5e-28
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 12  SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 70

Query: 106 DNGII------TMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELVSW 153
           D GI+       M        T  +P EL +G  G         +PP SV+ F++E +  
Sbjct: 71  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVS--YIARLEDGTVFEKKGYDGEQPLEFITDE 243
           + +    +G G        +G     + +   Y+ +LE+G VF+   Y+  +PL F    
Sbjct: 14  LAFCDKVVGYG----PEAVKG-----QLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGV 63

Query: 244 EQVIAGLD------RVAATMKKEEWAIVTINHEYGFGN--VEAKRDLATIPSCAKLYYEV 295
            +VI G D           M       + I  E  +G+     K     IP  + L +++
Sbjct: 64  GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDI 123

Query: 296 EMM 298
           E +
Sbjct: 124 EYI 126

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  104 bits (261), Expect = 5e-27
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 22/151 (14%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGW 94

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M+  E   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 95  TEALQLMR--EGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS------------ 140

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQVMLGD 195
                ++ G +  +  ++DE+L K +    D
Sbjct: 141 -----IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V + + +G    +P   D+  V Y                G            RL DG
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHY---------------TG------------RLRDG 70

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TVF+    +  +P  F  +  +VI G       M++ +   + I ++  +G         
Sbjct: 71  TVFDSS-RERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---G 124

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNL 327
            IP  + L ++VE++  IK+        +        +++  ++
Sbjct: 125 MIPPYSPLEFDVELIS-IKDGGKGRTAEEVDEILRKAEEDREDM 167

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 96.8 bits (241), Expect = 8e-24
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 293 YEVEMMDF-IKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351
              E + F   +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D     
Sbjct: 12  SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT 71

Query: 352 GSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQ 384
             + D       K++ +SC LN A C  K KDY 
Sbjct: 72  EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 94.8 bits (236), Expect = 7e-23
 Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 121 TGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGW 177

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +K  +       +P EL +G  G   +PPNS + F+VEL+ 
Sbjct: 178 TEGLKNIK--KGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V +++E G+   +P D D V+V Y               +G             L DG
Sbjct: 122 GLVYQVVEAGK-GEAPKDSDTVVVNY---------------KG------------TLIDG 153

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   Y   +PL F  D   VI G       +KK     + I  E  +G       + 
Sbjct: 154 KEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGK----AGVP 206

Query: 284 TIPSCAKLYYEVEMMD 299
            IP  + L ++VE++D
Sbjct: 207 GIPPNSTLVFDVELLD 222

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 34/135 (25%)

Query: 168 KILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFE 227
           K++  G     PG  D V V+Y                G            RL DGTVF+
Sbjct: 111 KVINSGN-GVKPGKSDTVTVEY---------------TG------------RLIDGTVFD 142

Query: 228 KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPS 287
                  +P  F     QVI G       M       + +     +G          I  
Sbjct: 143 -STEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGP 196

Query: 288 CAKLYYEVEMMDFIK 302
              L +++ ++   K
Sbjct: 197 NETLIFKIHLISVKK 211

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 87.4 bits (217), Expect = 7e-21
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV---SEDGSFVDDEQKLVKSL 365
                K+++    +++GN LF    Y+ A   Y  A   +          + E   +   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 366 RVSCWLNSAACCLKLKDYQ 384
            +  + N + C L + D  
Sbjct: 62  NIPLYANMSQCYLNIGDLH 80

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 87.1 bits (216), Expect = 3e-20
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
            GI    L  G     P+    V + YVG L DG  FD +     P  F+L    V +G 
Sbjct: 117 DGILMTELTPG-TGPKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRL--DSVISGW 170

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
            + +  M     A +   +PS+  +G EG  D + P + + FE+EL++
Sbjct: 171 TSALQNMP--TGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 37/139 (26%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+   L  G     P     V V+Y                G            RL DG
Sbjct: 118 GILMTELTPGT-GPKPDANGRVEVRY---------------VG------------RLPDG 149

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
            +F++      QP  F  D   VI+G       M       + I  +  +G   A     
Sbjct: 150 KIFDQST----QPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAG---D 200

Query: 284 TIPSCAKLYYEVEMMDFIK 302
            I     L +E+E++   +
Sbjct: 201 LIDPFTPLVFEIELIAVSQ 219

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 77.8 bits (192), Expect = 5e-16
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 298 MDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD 357
            DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D
Sbjct: 203 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 262

Query: 358 EQKL-VKSLRVSCWLNSAACCLKLKDYQG 385
                ++ + +SC LN  AC LK+ D+QG
Sbjct: 263 ADGAKLQPVALSCVLNIGACKLKMSDWQG 291

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 68.1 bits (167), Expect = 8e-14
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L
Sbjct: 28  NSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK--TTFSL 85

Query: 125 PSELRFG 131
             +  FG
Sbjct: 86  EPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V +  +L+DGT  E    +  +P  F   +  +  GL++    +K  +    ++  +  F
Sbjct: 33  VHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAF 91

Query: 274 G 274
           G
Sbjct: 92  G 92

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
               P          +  + ++EGN LFK G Y  A   Y +A      D +  D     
Sbjct: 12  GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQD----- 63

Query: 362 VKSLRVSCWLNSAACCLKLKDYQ 384
               +     N AAC LKL+DY 
Sbjct: 64  ----QAVLHRNRAACHLKLEDYD 82

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M+  +    T  +P+E  +G
Sbjct: 65  MEVGDE--KTVKIPAEKAYG 82

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 58  DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC 117
           + D         I Y       +    +    +PL F +GT Q+  GL+  ++  +  E 
Sbjct: 3   NHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEW 62

Query: 118 AVFTFTLPSELRFG 131
                 +  E  +G
Sbjct: 63  --EEVVIAPEEAYG 74

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGE--EREVVLPPEKAFG 81

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGEE--REVVLPPEKAFG 81

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              VTI Y   + +G   D        L++  G   +  GL+  +   ++ E   F   +
Sbjct: 6   DKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGE--AFQAHV 57

Query: 125 PSELRFG 131
           P+E  +G
Sbjct: 58  PAEKAYG 64

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 15/70 (21%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +E     KE+GN     G  + A + Y++A      +                  + N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL---------------YSNRS 45

Query: 375 ACCLKLKDYQ 384
           A   K  DYQ
Sbjct: 46  AAYAKKGDYQ 55

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           E A  +K +GN  FK G Y  A + YN+A     E+                  + N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL---------------YSNRAA 55

Query: 376 CCLKLKDYQ 384
           C  KL ++Q
Sbjct: 56  CLTKLMEFQ 64

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +    ++KE+GN LFK G Y  A   Y++      ++                  + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG---------------YSNKA 45

Query: 375 ACCLKLKDYQ 384
              +KL +Y 
Sbjct: 46  MALIKLGEYT 55

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
            +A   KE+GN LF   KY  A   Y +A         +               + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRAL 51

Query: 376 CCLKLKDYQ 384
           C LK++  +
Sbjct: 52  CYLKMQQPE 60

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 19/83 (22%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
           +++ P +    G ++ A   K + N  FK   YE A K Y++A +    +  +       
Sbjct: 1   RDEPPAD----GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY------- 49

Query: 362 VKSLRVSCWLNSAACCLKLKDYQ 384
                   + N +   L+ + Y 
Sbjct: 50  --------YGNRSLAYLRTECYG 64

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
             + + K EGN      +Y +A   Y +A      +  +                 N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY---------------LSNRAA 53

Query: 376 CCLKLKDYQ 384
                  ++
Sbjct: 54  AYSASGQHE 62

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A   K +GN  F+ G Y +A K Y +A     +D                  + N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---------------YSNRAA 58

Query: 376 CCLKLKDYQ 384
           C  KL ++Q
Sbjct: 59  CYTKLLEFQ 67

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 15/67 (22%)

Query: 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC 377
           A   + EG   F    +  A K Y +      ED                  + N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAAL 48

Query: 378 LKLKDYQ 384
            KL  + 
Sbjct: 49  AKLMSFP 55

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A ++KE GN  +K   ++ A K Y+KA +    + ++                 N AA
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAA 46

Query: 376 CCLKLKDYQ 384
              +  DY 
Sbjct: 47  VYFEKGDYN 55

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC 376
           +A   KE+GN LF   KY  A   Y +A         +               + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 377 CLKLKDYQ 384
            LK++  +
Sbjct: 48  YLKMQQPE 55

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           + ++     A R K EGN   K   +E A   Y KA +    +  +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 369 CWLNSAACCLKLKDYQG 385
            + N AA   KL +Y G
Sbjct: 49  -FCNRAAAYSKLGNYAG 64

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           +AA  +K+ GN  +K   +E+A   Y+KA +    + +F               + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------YNNKAA 50

Query: 376 CCLKLKDYQ 384
              + K + 
Sbjct: 51  VYFEEKKFA 59

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN 372
           G ++ A   K + N  FK   YE A K Y++A +    +  +               + N
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGN 45

Query: 373 SAACCLKLKDYQG 385
            +   L+ + Y  
Sbjct: 46  RSLAYLRTECYGY 58

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 11/75 (14%)

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
            +  +++   +  E    L ++G+Y  A  KY      +  + S  +   +         
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEYTVRS-------- 274

Query: 370 WLNSAACCLKLKDYQ 384
                 C  K +   
Sbjct: 275 KERICHCFSKDEKPV 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.96
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.94
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.9
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.89
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.89
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.89
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.89
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.89
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.88
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.87
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.87
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.87
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.86
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.86
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.86
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.85
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.85
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.85
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.85
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.84
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.84
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.83
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.83
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.83
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.83
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.8
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.8
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.78
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.78
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.78
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.77
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.74
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.74
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.71
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.71
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.7
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.7
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.67
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.63
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.63
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.51
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.48
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.45
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.42
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.42
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.4
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.39
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.38
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.25
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.18
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.08
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.91
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.78
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.38
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.83
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.78
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.36
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.9
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.72
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.53
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.5
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.35
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.31
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.28
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.19
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.01
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.91
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	95.81
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.61
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	95.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.36
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.3
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	94.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	94.84
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	94.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	94.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.68
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	94.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	94.57
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.53
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	94.52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	94.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	94.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	94.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.38
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.36
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.34
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.34
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	94.26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.19
3u4t_A	272	TPR repeat-containing protein; structural genomics	94.14
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.02
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.01
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	93.98
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	93.93
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.92
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	93.81
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	93.76
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.74
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.6
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	93.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	93.47
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	93.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	93.29
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	93.22
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	93.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	93.12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.11
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	92.93
3k9i_A	117	BH0479 protein; putative protein binding protein,	92.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	92.82
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	92.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	92.66
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	92.57
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	92.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.47
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	92.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	92.26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	92.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.01
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	91.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	91.89
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	91.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	91.69
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	91.67
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	91.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	91.64
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	91.45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	91.44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	91.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	91.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.01
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	89.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	89.23
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	89.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	88.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	88.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	88.53
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	87.24
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	86.58
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	86.26
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	84.85
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	84.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	84.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.57
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	84.04
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	83.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	83.46
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	83.27
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	82.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	82.45
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	81.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	80.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	80.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	80.06

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.7e-49  Score=394.57  Aligned_cols=313  Identities=34%  Similarity=0.586  Sum_probs=263.3

Q ss_pred             cCCCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhccccc
Q 016518           36 KVGEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (388)
Q Consensus        36 ~~~~~~-~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~  114 (388)
                      ..+.++ ..+++|++|+|+++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++
T Consensus        20 ~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~   99 (457)
T 1kt0_A           20 EQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKR   99 (457)
T ss_dssp             -------------CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCT
T ss_pred             CCcccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCC
Confidence            344555 3579999999999999955599999999999999989999999998888999999999999999999999999


Q ss_pred             CceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEec
Q 016518          115 RECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVML  193 (388)
Q Consensus       115 Ge~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l  193 (388)
                      |++++|  +|||+++||..|.+ .||++++++|+|+|+++... ++..|+++.++++++|.++..|..++.|+++     
T Consensus       100 Ge~~~~--~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~-----  171 (457)
T 1kt0_A          100 GEICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIH-----  171 (457)
T ss_dssp             TCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEE-----
T ss_pred             CCEEEE--EEChHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEE-----
Confidence            999999  99999999999876 89999999999999998754 7789999999999999999999999999865     


Q ss_pred             CCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCC---cccchHHHHHccccCCcEEEEEecCC
Q 016518          194 GDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEE---QVIAGLDRVAATMKKEEWAIVTINHE  270 (388)
Q Consensus       194 ~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~---~v~~gle~~l~~M~~Ge~~~v~i~~~  270 (388)
                                            |+|++ +|++||++      +++|.+|++   .++++|+.|+..|+.||++.|.++|.
T Consensus       172 ----------------------y~g~~-~g~~f~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~  222 (457)
T 1kt0_A          172 ----------------------LEGRC-GGRMFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR  222 (457)
T ss_dssp             ----------------------EEEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGG
T ss_pred             ----------------------EEEEe-CCeEEecC------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcc
Confidence                                  55666 77888876      699999977   48999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          271 YGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       271 ~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      ++|+..|...  ..|||++.+.|.+.|.++......|.+..+++...+..++..|+.+|+.|+|..|+..|++|+.+.+.
T Consensus       223 ~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~  300 (457)
T 1kt0_A          223 YGFGEAGKPK--FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM  300 (457)
T ss_dssp             GTTCSSCBGG--GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCCcc--cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence            9999998742  47999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          351 DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....+++..++..++..+|+|+|.||+++++|++|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          301 EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            7777888888999999999999999999999999987

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=6.3e-48  Score=372.52  Aligned_cols=263  Identities=54%  Similarity=0.897  Sum_probs=127.1

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        37 ~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      ++++..++++|++|+++++|+|+..|+.||.|++||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|+
T Consensus         2 ~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            2 VGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCC
Confidence            46667889999999999999997789999999999999999999999999888999999999999999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCC
Q 016518          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGD  195 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~  195 (388)
                      +++|  +|||+++||..+.+ .||++++|+|+|+|+++....|+..|+++.++++++|.++.+|..++.|++||++++.+
T Consensus        82 ~~~~--~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~d  159 (356)
T 3jxv_A           82 NALF--TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED  159 (356)
T ss_dssp             --------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT
T ss_pred             EEEE--EEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECC
Confidence            9999  99999999999988 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecCCC---------------------------------------Cce---------------eEE-----------
Q 016518          196 GTMVAKTPE---------------------------------------EGV---------------EFY-----------  210 (388)
Q Consensus       196 ~~~v~~~~~---------------------------------------~g~---------------~~~-----------  210 (388)
                      ++++.++..                                       .|.               .+.           
T Consensus       160 gt~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~d  239 (356)
T 3jxv_A          160 GTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE  239 (356)
T ss_dssp             SCEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEE
T ss_pred             CCEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccc
Confidence            886654210                                       000               000           


Q ss_pred             ----------e---e---------c---eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEE
Q 016518          211 ----------L---K---------D---VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIV  265 (388)
Q Consensus       211 ----------~---~---------~---v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v  265 (388)
                                +   +         +   +||+|++.||++||++.+.+++|+.|.+|.+++++||+.+|.+|++||++.|
T Consensus       240 v~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v  319 (356)
T 3jxv_A          240 IGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV  319 (356)
T ss_dssp             ESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred             cccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence                      0   0         0   9999999999999988456689999999999999999999999999999999


Q ss_pred             EecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       266 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      .|||.+|||+.+... ...|||+++|+|+|+|++|++
T Consensus       320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999987533 467999999999999999975

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3.6e-43  Score=327.05  Aligned_cols=227  Identities=37%  Similarity=0.625  Sum_probs=204.9

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEE
Q 016518           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (388)
Q Consensus        43 ~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~  122 (388)
                      .+++|++|+++++|+|..+|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus        48 ~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v--  125 (280)
T 1q1c_A           48 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--  125 (280)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEE--
Confidence            479999999999999955599999999999999999999999998778999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCcEEEEEEEccceeecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCccee
Q 016518          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMV  199 (388)
Q Consensus       123 ~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v  199 (388)
                      .|||+++||..+.+ .||++++++|+|+|+++.. .++.  .|+++.++++++|+|+..|..++.|+++|          
T Consensus       126 ~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y----------  194 (280)
T 1q1c_A          126 TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL----------  194 (280)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEE----------
T ss_pred             EECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEE----------
Confidence            99999999999876 8999999999999999875 4666  88999999999999998899999998764          


Q ss_pred             ecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCc---ccchHHHHHccccCCcEEEEEecCCCCCCCc
Q 016518          200 AKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGFGNV  276 (388)
Q Consensus       200 ~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~---v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~  276 (388)
                                       +|++ ||++||++      |+.|.||.++   +++||+.+|.+|++||++.|.|||+++||+.
T Consensus       195 -----------------~g~~-dG~~fd~~------~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~  250 (280)
T 1q1c_A          195 -----------------EGYY-KDKLFDQR------ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV  250 (280)
T ss_dssp             -----------------EEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTT
T ss_pred             -----------------EEEe-CCEEEecC------CeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcC
Confidence                             4555 67888875      8999999987   5999999999999999999999999999998


Q ss_pred             ccccCCCCCCCCCeEEEEEEEeeeecCcCccc
Q 016518          277 EAKRDLATIPSCAKLYYEVEMMDFIKEKVPWE  308 (388)
Q Consensus       277 ~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~  308 (388)
                      +.+.  ..|||+++|+|+|+|++|+..++.|.
T Consensus       251 ~~~~--~~IP~~~~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          251 GKEK--FQIPPNAELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             CBGG--GTBCTTCCEEEEEEEEEEECCCC---
T ss_pred             CCcc--CccCCCCeEEEEEEEEEEeCCCCCCC
Confidence            8621  36999999999999999999999884

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.96  E-value=2.5e-28  Score=234.30  Aligned_cols=196  Identities=31%  Similarity=0.514  Sum_probs=168.6

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCCCCCCeEEE
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~~~~p~~f~  240 (388)
                      +.++.++++++|.|. .|..++.|+||                           |+|++. +|++||++ +.++.|++|.
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~---------------------------y~g~~~~~g~~fd~~-~~~~~~~~~~   98 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLH---------------------------YRAWTKNSQHKFEDT-WHEQQPIELV   98 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEE---------------------------EEEEETTTCCCCEEH-HHHTCCEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEEcCCCcEeecc-cCCCCCeEEE
Confidence            457899999999998 78899999876                           555554 48899998 6778899999


Q ss_pred             ccCC-cccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCc---CccccCchhHHH
Q 016518          241 TDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK---VPWEMNNQGKIE  316 (388)
Q Consensus       241 lG~~-~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~---~~~~l~~~e~~~  316 (388)
                      +|.+ ++++||+.+|.+|++||++.|.|||.++||..+... ++.||++++++|+|+|+++....   ..|.++.++++.
T Consensus        99 lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~  177 (338)
T 2if4_A           99 LGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (338)
T ss_dssp             TTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHH
Confidence            9999 899999999999999999999999999999988632 36799999999999999998754   478899999999


Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC--CCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~--~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..++..|+.+|+.|+|..|+..|++|+.+.+...  .......+....++..+|+|+|.||+++++|.+|+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999875421  11223334556777889999999999999999986

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.94  E-value=1.2e-25  Score=215.35  Aligned_cols=197  Identities=33%  Similarity=0.559  Sum_probs=176.6

Q ss_pred             eecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCC
Q 016518          155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (388)
Q Consensus       155 ~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~  234 (388)
                      ...+++.|+++.++++++|+|...|..++.|+|+                           |+|++ +|++||++     
T Consensus        17 ~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~---------------------------y~g~~-~g~~fd~~-----   63 (336)
T 1p5q_A           17 RGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVA---------------------------LEGYY-KDKLFDQR-----   63 (336)
T ss_dssp             -----CCTTSEEEEEEECCCCSCCCCTTCEEEEE---------------------------EEEEE-TTEEEEEE-----
T ss_pred             cceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEE---------------------------EEEEE-CCEEEecC-----
Confidence            3567789999999999999999889999988865                           55666 78899987     


Q ss_pred             CCeEEEccCCc---ccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCccccCc
Q 016518          235 QPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN  311 (388)
Q Consensus       235 ~p~~f~lG~~~---v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~l~~  311 (388)
                       |++|.+|.|.   ++++|+.||..|+.||++.|.++|.++||..|...  ..||+++++.|+++|.+++.....|.+..
T Consensus        64 -~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~  140 (336)
T 1p5q_A           64 -ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNS  140 (336)
T ss_dssp             -EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCH
T ss_pred             -CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCH
Confidence             8999999886   58999999999999999999999999999998731  36999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.....+..++..|+.+|+.|+|.+|+..|++|+.+.+.......+...++..++..+|+|+|.||+++++|++|+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  216 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI  216 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999998877667777888889999999999999999999999987

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=8.2e-25  Score=183.51  Aligned_cols=117  Identities=38%  Similarity=0.642  Sum_probs=108.8

Q ss_pred             cCCCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhccccc
Q 016518           36 KVGEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (388)
Q Consensus        36 ~~~~~~-~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~  114 (388)
                      ..++++ ..+++|++|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++
T Consensus        24 ~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~  103 (144)
T 3o5e_A           24 EQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKK  103 (144)
T ss_dssp             HHCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCB
T ss_pred             cccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCC
Confidence            345555 5579999999999999965899999999999999999999999998889999999999999999999999999


Q ss_pred             CceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          115 RECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       115 Ge~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      |++++|  .|||+++||..+.+ .||++++|+|+|+|+++.
T Consensus       104 Ge~~~v--~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          104 GEICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             TCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEE--EEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999  99999999999987 999999999999999875

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=2.1e-24  Score=179.11  Aligned_cols=121  Identities=44%  Similarity=0.746  Sum_probs=104.5

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEE
Q 016518           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (388)
Q Consensus        44 ~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~  123 (388)
                      +++|++|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v--~   89 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--T   89 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--E
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEE--E
Confidence            78999999999999955799999999999999999999999987668999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCcEEEEEEEccceeecccC--cCcccee
Q 016518          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVK  167 (388)
Q Consensus       124 vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~~~dv~--~d~~v~k  167 (388)
                      |||+++||..+.+ .||++++++|+|+|+++... ++.  .|++++|
T Consensus        90 ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~-~l~~~~d~~v~k  135 (135)
T 1r9h_A           90 IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAE-DISPDRDGTILR  135 (135)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             EChHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC-CcCcCCCCcccC
Confidence            9999999999876 89999999999999998754 666  6777654

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.91  E-value=1e-23  Score=203.17  Aligned_cols=153  Identities=35%  Similarity=0.587  Sum_probs=144.5

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEE
Q 016518           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (388)
Q Consensus        44 ~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~  123 (388)
                      .+.++.++++++|.|+.+|..||.|++||++++.||++|+++    .++.|.+|.+++++||+.+|.+|++||+++|  +
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~--~  198 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLL--A  198 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEE--E
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEE--E
Confidence            578999999999999899999999999999999999999988    4799999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC------CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcc
Q 016518          124 LPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGT  197 (388)
Q Consensus       124 vp~~~~yg~~~~~------~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~  197 (388)
                      |||+++||..|.+      .||++++|.|+|+|+++....++..|.++.++++++|+++..|..++.|++||..++.+++
T Consensus       199 v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~  278 (356)
T 3jxv_A          199 VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGT  278 (356)
T ss_dssp             ECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSC
T ss_pred             EChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCC
Confidence            9999999999876      4999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeecC
Q 016518          198 MVAKT  202 (388)
Q Consensus       198 ~v~~~  202 (388)
                      +..++
T Consensus       279 ~fd~~  283 (356)
T 3jxv_A          279 VFLKK  283 (356)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            76544

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=2.8e-24  Score=176.82  Aligned_cols=115  Identities=38%  Similarity=0.654  Sum_probs=107.4

Q ss_pred             CCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           38 GEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        38 ~~~~-~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      ++++ ..+++|++|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus        10 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge   89 (128)
T 3o5q_A           10 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGE   89 (128)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             cceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCC
Confidence            4555 568999999999999995579999999999999999999999998777899999999999999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +++|  .|||+++||..+.+ .||++++|+|+|+|+++.
T Consensus        90 ~~~v--~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           90 ICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             EEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEE--EEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            9999  99999999999987 899999999999999875

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=5.9e-24  Score=172.78  Aligned_cols=108  Identities=41%  Similarity=0.671  Sum_probs=101.6

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCC-------CCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDR-------YDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        44 ~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~-------~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      .|+|++|+++++|+|...|+.||.|+|||++++.||++|++|+..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            489999999999999667999999999999999999999999863       4899999999999999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC--CCCCCCcEEEEEEEccc
Q 016518          117 CAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~--~ip~~~~l~~~i~l~~~  153 (388)
                      +++|  .|||+++||..+.+  .||++++|+|+|+|+++
T Consensus        82 ~~~v--~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARL--EIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEE--EECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEE--EECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999  99999999999986  79999999999999875

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=8.5e-24  Score=170.20  Aligned_cols=110  Identities=39%  Similarity=0.605  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~  121 (388)
                      ..+++|++|+++++|+|...|+.||.|++||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++| 
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v-   80 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL-   80 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE-
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE-
Confidence            3568999999999999943399999999999999999999999998778999999999999999999999999999999 


Q ss_pred             EEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          122 FTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       122 ~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                       .|||+++||..+.+ .||++++++|+|+|+++
T Consensus        81 -~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           81 -TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             -EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             -EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence             99999999999876 79999999999999876

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=2e-23  Score=172.46  Aligned_cols=110  Identities=40%  Similarity=0.688  Sum_probs=104.5

Q ss_pred             eeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEE
Q 016518           41 RGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVF  120 (388)
Q Consensus        41 ~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v  120 (388)
                      +..+++|++|+++++|+| ..|+.||.|+|||++++.||++|+++++++.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        23 ~~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v  101 (133)
T 2y78_A           23 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  101 (133)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEE
Confidence            477899999999999999 8999999999999999999999999998779999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          121 TFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       121 ~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                        .|||+++||..+.+ .|||+++++|+|+|+++
T Consensus       102 --~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          102 --TIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             --EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             --EECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence              99999999999987 79999999999999864

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=2.9e-23  Score=180.30  Aligned_cols=124  Identities=27%  Similarity=0.439  Sum_probs=113.5

Q ss_pred             CCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEeeCCC-cccccHHHH
Q 016518           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTG-QVATGLDNG  108 (388)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~-dg~~~~ss~~~~~p~~~~lg~~-~~~~g~~~~  108 (388)
                      ++.+.+.++++.++++|++|+++++|+| ..|..||.|+|||++++. ||++|++|+.++.|+.|.||.+ ++++||+++
T Consensus        34 ~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eea  112 (180)
T 2f4e_A           34 GNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIG  112 (180)
T ss_dssp             CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHH
T ss_pred             ccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHH
Confidence            4455567778888899999999999999 799999999999999998 6999999998779999999999 999999999


Q ss_pred             hcccccCceEEEEEEcCCCCCCCCCCC---CCCCCCCcEEEEEEEccceeec
Q 016518          109 IITMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWITVV  157 (388)
Q Consensus       109 l~~m~~Ge~~~v~~~vp~~~~yg~~~~---~~ip~~~~l~~~i~l~~~~~~~  157 (388)
                      |.+|++|++++|  .|||+++||..+.   +.||++++|+|+|+|+++....
T Consensus       113 L~gMk~Ge~~~v--~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          113 VASMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             HTTCCBTCEEEE--EECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBC
T ss_pred             HhCCCCCCEEEE--EECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCc
Confidence            999999999999  9999999999986   4899999999999999987543

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=170.86  Aligned_cols=113  Identities=28%  Similarity=0.476  Sum_probs=105.2

Q ss_pred             eeecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEc-CCcEEecccC--CCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           41 RGLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLL-DGTKFDSTRD--RYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        41 ~~~~~~g~~~~il~~G~g-~~~~~~gd~V~v~y~~~~~-dg~~~~ss~~--~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      +.++++|++|+++++|++ +..|+.||.|+|||++++. ||++|++|+.  .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             eEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            467899999999999982 3899999999999999998 9999999984  45899999999999999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEcccee
Q 016518          117 CAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~  155 (388)
                      +++|  .|||+++||..+.+.||++++|+|+|+|+++..
T Consensus        87 ~~~~--~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKL--IIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEE--EEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            9999  999999999999889999999999999998864

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.90  E-value=4.5e-24  Score=181.11  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=98.5

Q ss_pred             eecCCCeEEEEEEccCCCCC--CCCCCEEEEEEEEEEcC--CcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCce
Q 016518           42 GLGNSGIKKKLLKNGVDWDT--PEFGDEVTIHYVGTLLD--GTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~--~~~gd~V~v~y~~~~~d--g~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~  117 (388)
                      .++++||+|+|+++|+| ..  +++||.|+|||++++.|  |++||||+++++|+.|.||.+++|+||+++|.+|++|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCce
Confidence            57899999999999999 44  46899999999999864  999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCCCCC---------CCCC-----------------------------CCCCCcEEEEEEEccceeecc
Q 016518          118 AVFTFTLPSELRFGVE---------GRDS-----------------------------LPPNSVVQFEVELVSWITVVD  158 (388)
Q Consensus       118 ~~v~~~vp~~~~yg~~---------~~~~-----------------------------ip~~~~l~~~i~l~~~~~~~d  158 (388)
                      ++|  +|||++|||..         ....                             +++.++|+|+|+|+++..+.+
T Consensus        85 ~~~--~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           85 AQF--LCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EEE--ECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             EEE--EECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            999  99999999921         0001                             233467999999999976544

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=2.4e-23  Score=165.92  Aligned_cols=105  Identities=33%  Similarity=0.668  Sum_probs=98.8

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCC
Q 016518           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (388)
Q Consensus        47 g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~  126 (388)
                      |++|+++++|+|...|+.||.|++||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|  .+||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~--~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEE--EECH
Confidence            78999999999944499999999999999999999999987668999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       127 ~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      +++||..+.+ .||++++++|+|+|+++
T Consensus        79 ~~ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           79 DYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            9999999876 89999999999999875

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.89  E-value=7.9e-23  Score=177.53  Aligned_cols=128  Identities=29%  Similarity=0.492  Sum_probs=100.7

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCCCCCCeEEE
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~~~~p~~f~  240 (388)
                      +.++.++++++|.|. .|..++.|++|                           |++++. +|++||++ +.++.|+.|.
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~---------------------------Y~g~l~~dG~~fdss-~~~~~p~~f~   98 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLH---------------------------YRAWTKNSQHKFEDT-WHEQQPIELV   98 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEE---------------------------EEEEETTTCCEEEET-TTTTCCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCcEEecc-CccCCCEEEE
Confidence            356899999999997 78889988876                           555554 58999999 7778999999


Q ss_pred             ccCC-cccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcC---ccccCchhHHH
Q 016518          241 TDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV---PWEMNNQGKIE  316 (388)
Q Consensus       241 lG~~-~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~---~~~l~~~e~~~  316 (388)
                      ||.+ ++++||+.+|.+|++||++.|.|||.++||..+.+. ++.|||+++|+|+|+|++|...++   .|+|+.+||++
T Consensus        99 lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~  177 (180)
T 2f4e_A           99 LGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (180)
T ss_dssp             TTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC-------------
T ss_pred             eCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHh
Confidence            9999 999999999999999999999999999999988632 367999999999999999999887   89999999998


Q ss_pred             HHH
Q 016518          317 AAG  319 (388)
Q Consensus       317 ~a~  319 (388)
                      .|.
T Consensus       178 ~A~  180 (180)
T 2f4e_A          178 AAD  180 (180)
T ss_dssp             ---
T ss_pred             hcC
Confidence            874

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.89  E-value=4.4e-23  Score=169.84  Aligned_cols=110  Identities=40%  Similarity=0.725  Sum_probs=102.6

Q ss_pred             eecCCCeEEE--EEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEE
Q 016518           42 GLGNSGIKKK--LLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        42 ~~~~~g~~~~--il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      ..+++|++|+  ++++|+|...|+.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++
T Consensus        18 ~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~   97 (130)
T 2lgo_A           18 GPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKAL   97 (130)
T ss_dssp             SSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEE
T ss_pred             eeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEE
Confidence            5679999999  99999994349999999999999988999999999877899999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          120 FTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      |  .|||+++||..+.+ .||++++++|+|+|+++
T Consensus        98 v--~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           98 F--TIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             E--EECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             E--EECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9  99999999999876 79999999999999864

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.89  E-value=1.2e-22  Score=170.34  Aligned_cols=117  Identities=34%  Similarity=0.554  Sum_probs=105.9

Q ss_pred             eecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCC
Q 016518          155 TVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYD  232 (388)
Q Consensus       155 ~~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~  232 (388)
                      ...|++  .|+++.++++++|+|...|..++.|++|                           |++++.||++||++ +.
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~   76 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HD   76 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEECTTSCEEEES-GG
T ss_pred             ccccccccCCCeEEEEEEECCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEee-cc
Confidence            356777  7899999999999998889999999876                           55666688999998 77


Q ss_pred             CCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       233 ~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      ++.|+.|.+|.+++++||+.+|.+|++||+++|.|||.+|||+.+.   ++.|||+++|+|+|+|++|+.
T Consensus        77 ~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~---~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A           77 RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             GTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             cCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCC---CCCcCCCCeEEEEEEEEEecC
Confidence            7899999999999999999999999999999999999999999998   578999999999999999863

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=3.7e-23  Score=176.96  Aligned_cols=113  Identities=32%  Similarity=0.551  Sum_probs=105.4

Q ss_pred             CCceeecCCCeEEEEEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           38 GEERGLGNSGIKKKLLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        38 ~~~~~~~~~g~~~~il~~G~g~~~-~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      .+.+.++++|++|+++++|+| .. |..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+
T Consensus        29 ~~~~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge  105 (167)
T 1jvw_A           29 QPDAVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGD  105 (167)
T ss_dssp             STTEEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTC
T ss_pred             CCCcEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCC
Confidence            345678899999999999999 56 999999999999999999999999877789999995  99999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEcccee
Q 016518          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~  155 (388)
                      +++|  .|||+++||..+.+ .||||++|+|+|+|+++..
T Consensus       106 ~~~~--~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          106 RWRL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             EEEE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             EEEE--EECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            9999  99999999999977 8999999999999999864

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.89  E-value=9.5e-23  Score=167.94  Aligned_cols=116  Identities=41%  Similarity=0.605  Sum_probs=102.7

Q ss_pred             CCceeecCCCeE-EEEEEcc-CC-CCCCCCCCEEEEEEEEEE-cCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccc
Q 016518           38 GEERGLGNSGIK-KKLLKNG-VD-WDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK  113 (388)
Q Consensus        38 ~~~~~~~~~g~~-~~il~~G-~g-~~~~~~gd~V~v~y~~~~-~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~  113 (388)
                      .+++.++++|+. |+++++| .| +..|+.||.|+|||++++ .||++|++++.++.|+.|.+|.+++++||+++|.+|+
T Consensus         7 ~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~   86 (129)
T 2vn1_A            7 FEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMR   86 (129)
T ss_dssp             CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCC
T ss_pred             cCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCC
Confidence            345555666654 5799977 44 388999999999999999 7999999999777899999999999999999999999


Q ss_pred             cCceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEcccee
Q 016518          114 KRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       114 ~Ge~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~  155 (388)
                      +|++++|  .|||+++||..+.+ .||++++++|+|+|+++..
T Consensus        87 ~Ge~~~v--~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           87 KNEKCLV--RIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEE--EEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            9999999  99999999999876 7999999999999998764

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.2e-23  Score=172.70  Aligned_cols=110  Identities=30%  Similarity=0.522  Sum_probs=96.6

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVF  120 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~-dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v  120 (388)
                      .++++|++|+++++|+| ..+..||.|+|||++++. +|++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        22 v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v  100 (134)
T 3b7x_A           22 ISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARF  100 (134)
T ss_dssp             SSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEE
T ss_pred             eeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEE
Confidence            55899999999999999 688999999999999988 6999999987778999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          121 TFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       121 ~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                        .|||+++||..+.+ .||++++|+|+|+|+++.
T Consensus       101 --~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          101 --LFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             --EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             --EECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence              99999999999877 799999999999998874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.89  E-value=1.4e-22  Score=180.14  Aligned_cols=111  Identities=40%  Similarity=0.680  Sum_probs=105.3

Q ss_pred             ceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEE
Q 016518           40 ERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        40 ~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      .+.++++|++|+++++|+| ..|..||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++
T Consensus        98 t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~  176 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR  176 (209)
T ss_dssp             CCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEE
T ss_pred             cccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEE
Confidence            3567899999999999999 789999999999999999999999999888999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          120 FTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      |  .|||++|||..+.+ .||++++|+|+|+|+++
T Consensus       177 v--~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          177 L--TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             E--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             E--EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9  99999999999987 69999999999999864

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.89  E-value=1.3e-22  Score=164.46  Aligned_cols=111  Identities=31%  Similarity=0.439  Sum_probs=101.9

Q ss_pred             CCceeecCCC-eEEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518           38 GEERGLGNSG-IKKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (388)
Q Consensus        38 ~~~~~~~~~g-~~~~il~~G~g~-~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G  115 (388)
                      .+|+.++++| ++|+++++|+|. ..|+.||.|++||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|
T Consensus         4 ~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~G   79 (118)
T 2awg_A            4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVG   79 (118)
T ss_dssp             TCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTT
T ss_pred             ccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCC
Confidence            4667667777 999999999993 38999999999999998899999984    79999999999999999999999999


Q ss_pred             ceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       116 e~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      ++++|  .|||+++||..+.+ .||++++++|+|+|+++.
T Consensus        80 e~~~~--~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           80 ETAMV--TADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CEEEE--EEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            99999  99999999999876 899999999999998874

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.88  E-value=8.1e-23  Score=181.30  Aligned_cols=110  Identities=27%  Similarity=0.438  Sum_probs=103.1

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        37 ~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      ..+.+.++++|++|+++++|+| ..|..||.|+|||++++.||++|++|   +.|+.|.+|  ++|+||+++|.+|++|+
T Consensus       108 ~~~gv~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Ge  181 (219)
T 3oe2_A          108 AKPGVKELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGA  181 (219)
T ss_dssp             TSTTCEECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTC
T ss_pred             cCCCcEECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCC
Confidence            3445678899999999999999 79999999999999999999999999   589999998  89999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +++|  +|||+++||..|.+ .|||+++|+|+|+|+++.
T Consensus       182 k~~v--~IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          182 KWRL--VIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEE--EECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            9999  99999999999988 699999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=2.8e-22  Score=169.58  Aligned_cols=113  Identities=30%  Similarity=0.436  Sum_probs=102.8

Q ss_pred             CCceeecCCCe-EEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518           38 GEERGLGNSGI-KKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (388)
Q Consensus        38 ~~~~~~~~~g~-~~~il~~G~g~-~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G  115 (388)
                      .++..++++|+ +|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|
T Consensus        34 ~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~G  109 (157)
T 2jwx_A           34 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVG  109 (157)
T ss_dssp             CSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTT
T ss_pred             cccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCC
Confidence            44556778886 89999999992 38999999999999999999999984    79999999999999999999999999


Q ss_pred             ceEEEEEEcCCCCCCCCCC-CC-CCCCCCcEEEEEEEccceee
Q 016518          116 ECAVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITV  156 (388)
Q Consensus       116 e~~~v~~~vp~~~~yg~~~-~~-~ip~~~~l~~~i~l~~~~~~  156 (388)
                      ++++|  .|||+++||..+ .+ .||++++|+|+|+|+++...
T Consensus       110 e~~~v--~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          110 ETAMV--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             CEEEE--EECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             CEEEE--EECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            99999  999999999999 55 89999999999999988653

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=1.6e-22  Score=179.52  Aligned_cols=112  Identities=30%  Similarity=0.464  Sum_probs=105.4

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCce
Q 016518           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (388)
Q Consensus        38 ~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~  117 (388)
                      .+.+.++++|++|+++++|+| ..|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++
T Consensus        98 ~~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek  174 (213)
T 1fd9_A           98 KPGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGST  174 (213)
T ss_dssp             STTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCE
T ss_pred             cCCcEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCE
Confidence            455788999999999999999 89999999999999999999999999987789999995  899999999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       118 ~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      ++|  .|||+++||..+.+ .|||+++|+|+|+|+++.
T Consensus       175 ~~v--~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          175 WEI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             EEE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             EEE--EECchhccCccCCCCCCCCCCeEEEEEEEEEEE
Confidence            999  99999999999976 899999999999999875

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=168.15  Aligned_cols=119  Identities=29%  Similarity=0.393  Sum_probs=106.6

Q ss_pred             CccCCCceeecCCC-eEEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcc
Q 016518           34 PLKVGEERGLGNSG-IKKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT  111 (388)
Q Consensus        34 ~~~~~~~~~~~~~g-~~~~il~~G~g~-~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~  111 (388)
                      .....+++.++++| ++|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+
T Consensus         4 ~~~~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~g   79 (135)
T 2d9f_A            4 GSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPL   79 (135)
T ss_dssp             SCCCSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGG
T ss_pred             CCCcccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhC
Confidence            34566778777777 999999999992 38999999999999999999999973    7999999999999999999999


Q ss_pred             cccCceEEEEEEcCCCCCCCCCC-CC-CCCCCCcEEEEEEEccceeecc
Q 016518          112 MKKRECAVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVVD  158 (388)
Q Consensus       112 m~~Ge~~~v~~~vp~~~~yg~~~-~~-~ip~~~~l~~~i~l~~~~~~~d  158 (388)
                      |++|++++|  .|||+++||..+ .+ .||++++++|+|+|+++....+
T Consensus        80 m~~Ge~~~v--~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           80 MDVGETAMV--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             SCTTCEEEE--EECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCCCCEEEE--EEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            999999999  999999999998 55 8999999999999999876544

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=6.3e-23  Score=168.95  Aligned_cols=111  Identities=34%  Similarity=0.565  Sum_probs=103.5

Q ss_pred             ceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcc------cc
Q 016518           40 ERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT------MK  113 (388)
Q Consensus        40 ~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~------m~  113 (388)
                      .+..+++|++|+++++|+| ..++.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+      |+
T Consensus         6 ~~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~   84 (129)
T 1u79_A            6 EFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML   84 (129)
T ss_dssp             CCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCB
T ss_pred             ccEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccC
Confidence            3477899999999999999 7899999999999999989999999987668999999999999999999998      99


Q ss_pred             cCceEEEEEEcCCCCCCCCCCC------CCCCCCCcEEEEEEEccc
Q 016518          114 KRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSW  153 (388)
Q Consensus       114 ~Ge~~~v~~~vp~~~~yg~~~~------~~ip~~~~l~~~i~l~~~  153 (388)
                      +|++++|  .|||+++||..+.      +.||++++++|+|+|+++
T Consensus        85 ~Ge~~~v--~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           85 TGGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEE--EEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            9999999  9999999999985      279999999999999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.88  E-value=3.7e-22  Score=164.12  Aligned_cols=116  Identities=34%  Similarity=0.559  Sum_probs=104.3

Q ss_pred             ecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       156 ~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      ..|++  .|+++.++++++|+|...|..++.|++|                           |++++.||++||++ +.+
T Consensus        10 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   61 (128)
T 3o5q_A           10 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HDR   61 (128)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHH
T ss_pred             cceecccCCCCEEEEEEECCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCC
Confidence            34555  7889999999999998889999999876                           55666688999998 677


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      +.|+.|.+|.+++++||+.+|.+|++||+++|.|||.+|||+.+.   ++.|||+++|+|+|+|++|..
T Consensus        62 ~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~---~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           62 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             TSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC---CCCcCCCCEEEEEEEEEEecC
Confidence            889999999999999999999999999999999999999999988   578999999999999999864

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.88  E-value=3.9e-22  Score=178.26  Aligned_cols=111  Identities=32%  Similarity=0.628  Sum_probs=104.4

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCce
Q 016518           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (388)
Q Consensus        38 ~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~  117 (388)
                      .+.+.++++|++|+++++|+| ..|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++
T Consensus       113 ~~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek  189 (224)
T 1q6h_A          113 EKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGK  189 (224)
T ss_dssp             STTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCE
T ss_pred             CCCeEECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCE
Confidence            355677899999999999999 79999999999999999999999999988899999995  899999999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccc
Q 016518          118 AVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (388)
Q Consensus       118 ~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~  153 (388)
                      ++|  .|||+++||..+.+.||++++++|+|+|+++
T Consensus       190 ~~v--~IP~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          190 IKL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             EEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             EEE--EECchhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            999  9999999999998789999999999999876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.87  E-value=1.5e-21  Score=187.11  Aligned_cols=122  Identities=27%  Similarity=0.455  Sum_probs=110.7

Q ss_pred             CCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcC-CcEEecccCCCCCeEEeeCCC-cccccHHHH
Q 016518           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTG-QVATGLDNG  108 (388)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~d-g~~~~ss~~~~~p~~~~lg~~-~~~~g~~~~  108 (388)
                      ...++.+..++.++++|+.|+|+++|+| ..|..||.|+|||++++.+ |++|++|+.++.|+.|.+|.+ ++|+||+.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~  112 (338)
T 2if4_A           34 GNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIG  112 (338)
T ss_dssp             -CCCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHH
T ss_pred             cCCCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHH
Confidence            4445566677788899999999999999 6999999999999999985 999999987779999999999 999999999


Q ss_pred             hcccccCceEEEEEEcCCCCCCCCCCC---CCCCCCCcEEEEEEEcccee
Q 016518          109 IITMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       109 l~~m~~Ge~~~v~~~vp~~~~yg~~~~---~~ip~~~~l~~~i~l~~~~~  155 (388)
                      |.+|++||+++|  +|||.++||..+.   +.||+++++.|.|+|+.+..
T Consensus       113 l~~m~~Ge~~~~--~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~  160 (338)
T 2if4_A          113 VASMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDE  160 (338)
T ss_dssp             HHHCCBTCEEEE--EECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEEC
T ss_pred             HhcCCCCCeEEE--EECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecC
Confidence            999999999999  9999999999997   48999999999999988754

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.87  E-value=1.8e-21  Score=157.99  Aligned_cols=109  Identities=36%  Similarity=0.517  Sum_probs=96.0

Q ss_pred             ccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC-------CC
Q 016518          163 GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG-------EQ  235 (388)
Q Consensus       163 ~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~-------~~  235 (388)
                      .++.++++++|++...|..++.|++|                           |++++.||++||++ +..       +.
T Consensus         4 ~g~~~~il~~G~g~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~~~~~~~~   55 (119)
T 3kz7_A            4 PKYTKSILKKGDKTNFPKKGDVVHCW---------------------------YTGTLPDGTVFDTN-IQTSSKKKKNAK   55 (119)
T ss_dssp             CSEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEECTTSCEEEEC-CCCSSSTTTTCC
T ss_pred             CccEEEEEEcCCCCCcCCCCCEEEEE---------------------------EEEEECCCCEEEec-cccccccccCCC
Confidence            46899999999998889999999876                           55555678889988 442       48


Q ss_pred             CeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       236 p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      |+.|.+|.+++++||+.+|.+|++||++.|.|||++|||+.+.+.  ..|||+++|+|+|+|++|+
T Consensus        56 p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           56 PLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             CEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHhCCCCCCEEEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEeC
Confidence            999999999999999999999999999999999999999998731  4799999999999999974

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.87  E-value=1.4e-21  Score=162.07  Aligned_cols=117  Identities=36%  Similarity=0.581  Sum_probs=104.4

Q ss_pred             ecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       156 ~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      +.|++  .+.++.++++++|+|+..|..++.|++|                           |++++.||++||++ +.+
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   56 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVH---------------------------YVGTLENGTKFDSS-RDR   56 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHH
T ss_pred             ceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-CcC
Confidence            55777  7889999999999998778899999876                           55566688999998 556


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecC
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~  303 (388)
                      +.|++|.+|.+++++||+.+|.+|++||++.|.|||++|||+.+.   ++.||++++|+|+|+|++|...
T Consensus        57 ~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~---~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           57 GDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS---PPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             TSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC-
T ss_pred             CCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC---CCCcCcCCcEEEEEEEEEeecC
Confidence            789999999999999999999999999999999999999999987   5789999999999999999753

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.86  E-value=5.2e-21  Score=157.53  Aligned_cols=116  Identities=35%  Similarity=0.696  Sum_probs=101.7

Q ss_pred             ecccCcCccceeeEeecC-CC-CCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEee-cCceEEeecCCC
Q 016518          156 VVDLSKDGGIVKKILEKG-ER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL-EDGTVFEKKGYD  232 (388)
Q Consensus       156 ~~dv~~d~~v~kkil~~G-~g-~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~-~dg~~fd~s~~~  232 (388)
                      ..+++.++.+.++++++| .| ...|..++.|+++                           |++++ .||++||++ +.
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~---------------------------Y~g~~~~dG~~fd~s-~~   60 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVH---------------------------YVGKLESTGKVFDSS-FD   60 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEE---------------------------EEEEETTTCCEEEEG-GG
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEE---------------------------EEEEECCCCeEEEec-CC
Confidence            456778888999999988 55 3578888988876                           55555 588999998 66


Q ss_pred             CCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       233 ~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      ++.|++|.+|.+++++||+.+|.+|++||++.|.|||.+|||+.+.   ++.|||+++|+|+|+|+++..
T Consensus        61 ~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           61 RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGC---GESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEEEChHHcCCCCCC---CCCcCCCCeEEEEEEEEEEec
Confidence            7789999999999999999999999999999999999999999887   567999999999999999975

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=165.13  Aligned_cols=117  Identities=16%  Similarity=0.264  Sum_probs=93.2

Q ss_pred             cCccceeeEeecCCCCCC-CCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEee--cCceEEeecCCCCCCCe
Q 016518          161 KDGGIVKKILEKGERDAS-PGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL--EDGTVFEKKGYDGEQPL  237 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~-p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~--~dg~~fd~s~~~~~~p~  237 (388)
                      .+.++.++++++|+|... +..++.|++|                           |+|++  .||++||+| +.+++|+
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vh---------------------------Y~g~l~d~~G~~FDsS-~~rg~P~   59 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFH---------------------------YRTLHSDDEGTVLDDS-RARGKPM   59 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEE---------------------------CEEECSSSSCCEEEES-TTTTCCE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEE---------------------------EEEEEeCCCccEEEec-ccCCCCE
Confidence            467899999999999743 3578888866                           55555  359999999 8999999


Q ss_pred             EEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc----cc-CCCC----------------------------
Q 016518          238 EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA----KR-DLAT----------------------------  284 (388)
Q Consensus       238 ~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~----~~-~~~~----------------------------  284 (388)
                      +|.||.+++|+||+.+|.+|++||+++|+|||++|||....    +. ....                            
T Consensus        60 ~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~  139 (165)
T 2lkn_A           60 ELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDA  139 (165)
T ss_dssp             EEESSSSCSCSHHHHHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTH
T ss_pred             EEEecCCCccHHHHHHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeecccccccccccccc
Confidence            99999999999999999999999999999999999993110    00 0122                            


Q ss_pred             -CCCCCeEEEEEEEeeeecCcC
Q 016518          285 -IPSCAKLYYEVEMMDFIKEKV  305 (388)
Q Consensus       285 -ip~~~~l~f~veL~~~~~~~~  305 (388)
                       |+++++|+|+|||++|+.+.+
T Consensus       140 li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A          140 LQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             HHHSCCCCEEEEEEEEEECTTT
T ss_pred             ccCCCCCeEEEEEEEEEcCCcc
Confidence             333467999999999987543

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.86  E-value=7.6e-21  Score=152.89  Aligned_cols=108  Identities=26%  Similarity=0.387  Sum_probs=96.7

Q ss_pred             ccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEcc
Q 016518          163 GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD  242 (388)
Q Consensus       163 ~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG  242 (388)
                      .++.++++++|+|...|..++.|+++                           |++++.||++||++ +.++.|++|.+|
T Consensus         6 ~g~~~~~~~~G~g~~~~~~gd~V~v~---------------------------y~~~~~dG~~~d~s-~~~~~p~~f~lG   57 (113)
T 1yat_A            6 GNVKIDRISPGDGATFPKTGDLVTIH---------------------------YTGTLENGQKFDSS-VDRGSPFQCNIG   57 (113)
T ss_dssp             GGCEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTTTCCEEEETT
T ss_pred             CCeEEEEEECCCCcccCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCcEEEEeC
Confidence            46899999999998668899998876                           55555688999998 666789999999


Q ss_pred             CCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       243 ~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      .+++++||+.+|.+|++||++.|.+||.+|||+.+.   ++.|||+++|+|+|+|++++
T Consensus        58 ~~~~i~g~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~---~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF---PGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             SSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCCCCeEEEEEEEEEeC
Confidence            999999999999999999999999999999999887   56799999999999999874

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.85  E-value=4.2e-21  Score=152.88  Aligned_cols=107  Identities=27%  Similarity=0.515  Sum_probs=95.3

Q ss_pred             cceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccC
Q 016518          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (388)
Q Consensus       164 ~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~  243 (388)
                      ++.++++++|+|...|..++.|+++                           |++++.||++||++ +.++.|++|.+|.
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~---------------------------y~~~~~dG~~~d~s-~~~~~p~~f~lG~   52 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVH---------------------------YTGMLEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCCEEEEeCC
Confidence            4678999999998768899999876                           55566688899998 5656899999999


Q ss_pred             CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       244 ~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +++++||+.+|.+|++||++.|.+||+++||+.+.   ++.|||+++|+|+|+|++++
T Consensus        53 ~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~---~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CChHHHHHHHHhCCCCCCEEEEEECHHHccCCCCC---CCCcCCCCeEEEEEEEEEeC
Confidence            99999999999999999999999999999999887   56799999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.85  E-value=2e-21  Score=160.84  Aligned_cols=115  Identities=26%  Similarity=0.479  Sum_probs=93.8

Q ss_pred             eecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCCC
Q 016518          155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDG  233 (388)
Q Consensus       155 ~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~~  233 (388)
                      .+.+++.+.++.++++++|+|. .+..++.|++|                           |++++. +|++||++ +.+
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~---------------------------Y~g~l~~~G~~fdss-~~~   68 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVK---------------------------YSGYLEHMDRPFDSN-YFR   68 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEE---------------------------EEEECTTCSSCSEEC----
T ss_pred             ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCeEEEec-CCC
Confidence            3567888999999999999987 35568888866                           555554 57888888 666


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +.|++|.+|.+++++||+.+|.+|++||++.|.|||++|||+.+.   ++.|||+++|+|+|+|++|.
T Consensus        69 ~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           69 KTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC---PPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             ----CEEC-CCCCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCcCCeEEEEEEEEEEe
Confidence            789999999999999999999999999999999999999999887   56799999999999999985

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.85  E-value=1.2e-20  Score=152.88  Aligned_cols=112  Identities=29%  Similarity=0.351  Sum_probs=99.8

Q ss_pred             eecccCcCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       155 ~~~dv~~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      .+.++++++.+.++++++|+|. ..|..++.|+++|                           ++++.||++|+++    
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y---------------------------~g~~~dG~~~ds~----   53 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL---------------------------QTSLENGTRVQEE----   53 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEE---------------------------EEECTTSCEEEEE----
T ss_pred             cceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEE---------------------------EEEECCCCEEECC----
Confidence            4678889999999999999986 4788899998764                           5555578888875    


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                       +|++|.+|.+++++||+.+|.+|++||++.|.+||++|||+.+.   ++.|||+++|+|+|+|+++.
T Consensus        54 -~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~---~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           54 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR---SPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             -EEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             -CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEChHHccCCCCC---CCccCCCCeEEEEEEEEEec
Confidence             79999999999999999999999999999999999999999887   56899999999999999986

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.85  E-value=9.3e-21  Score=162.03  Aligned_cols=122  Identities=23%  Similarity=0.350  Sum_probs=104.6

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      .+.++.++++++|+|...|..++.|++|                           |.|++.||++||++ +.++.|++|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~---------------------------Y~g~l~dG~~fdss-~~~g~p~~f~   86 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVH---------------------------YTGRLRDGTVFDSS-RERGKPTTFR   86 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEC
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEeec-cccCCCEEEE
Confidence            4567899999999998658899998865                           66666788999998 6667899999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCccccCchhHHHH
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEA  317 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~l~~~e~~~~  317 (388)
                      +|  ++++||+.+|.+|++|+++.|.|||.+|||+.+.   ++.|||+++|+|+|+|++|.+  ..|.++.+|.-+.
T Consensus        87 lg--~vI~G~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~---~~~Ipp~s~LiF~VeL~~i~~--~~~~~~~~e~~~~  156 (167)
T 1jvw_A           87 PN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG---GGMIPPYSPLEFDVELISIKD--GGKGRTAEEVDEI  156 (167)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS---SSSSCTTCCEEEEEEEEEEGG--GCCSCBHHHHHHH
T ss_pred             eC--chhHHHHHHHcCCCCCCEEEEEECchhhCCCCCC---CCCcCCCCeEEEEEEEEEEEc--CCCCCCHHHHHHH
Confidence            95  8999999999999999999999999999999987   578999999999999999985  3466777765443

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=159.01  Aligned_cols=116  Identities=28%  Similarity=0.330  Sum_probs=101.3

Q ss_pred             eecccCcCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       155 ~~~dv~~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      .+.++++++.+.++++++|+|. ..|..++.|+++                           |+|++.||++||++    
T Consensus        35 ~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~---------------------------Y~g~l~dG~~fds~----   83 (157)
T 2jwx_A           35 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVH---------------------------LQTSLENGTRVQEE----   83 (157)
T ss_dssp             SCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEE---------------------------EEEECTTSCEEEEE----
T ss_pred             ccceECCCCCEEEEEEEccCCCccCCCCCCEEEEE---------------------------EEEEECCCCEeecC----
Confidence            3456778888899999999985 578888888866                           55666688899986    


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc-cccCCCCCCCCCeEEEEEEEeeeecCcC
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE-AKRDLATIPSCAKLYYEVEMMDFIKEKV  305 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~veL~~~~~~~~  305 (388)
                       .|++|.+|.+++++||+.+|.+|++||+++|.|||++|||+.+ .   .+.|||+++|+|+|+|+++.....
T Consensus        84 -~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~---~~~IPp~stLiF~VeL~~i~~~~~  152 (157)
T 2jwx_A           84 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHAALCLEVTLKTAVDLEH  152 (157)
T ss_dssp             -EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCS---SSCCCTTCCEEEEEEEEEEEECSC
T ss_pred             -CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECchhcCCccccc---CCCcCCCCeEEEEEEEEEEEcccc
Confidence             7999999999999999999999999999999999999999988 4   467999999999999999987554

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.84  E-value=2.6e-20  Score=153.21  Aligned_cols=104  Identities=32%  Similarity=0.474  Sum_probs=92.5

Q ss_pred             eeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCc
Q 016518          166 VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ  245 (388)
Q Consensus       166 ~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~  245 (388)
                      .|+++++|+|...|..++.|+++                           |++++.||++||++ +.++.|++|.+|.++
T Consensus        27 ~K~~l~~G~G~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~lG~g~   78 (130)
T 2lgo_A           27 EKKVLTPGDGVTKPQAGKKVTVH---------------------------YDGRFPDGKQFDSS-RSRGKPFQFTLGAGE   78 (130)
T ss_dssp             CEEEEECCCSSCCCCTTSEEEEE---------------------------EEEECTTSCEEECT-TTTTCCEEEETTSTT
T ss_pred             EEEEEeccCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEcc-CcCCCCEEEEeCCCC
Confidence            44599999998668899999876                           55555678899998 677789999999999


Q ss_pred             ccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518          246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       246 v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~  300 (388)
                      +++||+.+|.+|++||++.|.|||.++||+.+.   ++.|||+++|+|+|+|++|
T Consensus        79 vi~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           79 VIKGWDQGVATMTLGEKALFTIPYQLAYGERGY---PPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             SCHHHHHHHHHSCTTEEEEEEECTTTSTTTTCC---STTSCSSCCEEEEEEEEEC
T ss_pred             ccHHHHHHHhCCCCCCEEEEEECcHHHCCCCCC---CCCcCCCCeEEEEEEEEEC
Confidence            999999999999999999999999999999887   5679999999999999985

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=8.9e-21  Score=157.20  Aligned_cols=124  Identities=26%  Similarity=0.295  Sum_probs=107.1

Q ss_pred             eecccCcCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       155 ~~~dv~~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      .+.++++++.+.++++++|+|. ..|..++.|+++                           |++++.||++||++    
T Consensus         9 ~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fds~----   57 (135)
T 2d9f_A            9 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVH---------------------------LQTSLENGTRVQEE----   57 (135)
T ss_dssp             SCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEE---------------------------EEEEESSSCEEEEE----
T ss_pred             cCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEecC----
Confidence            4667889999999999999985 578889988876                           55555678888875    


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCccccCch
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQ  312 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~l~~~  312 (388)
                       .|++|.+|.+++++||+.+|.+|++||++.|.|||+++||+.+..  ++.|||+++|+|+|+|+++...++...+++.
T Consensus        58 -~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~--~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~~  133 (135)
T 2d9f_A           58 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDRPDLEMSGPS  133 (135)
T ss_dssp             -EEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCS--SSCCCTTCCEEEEEEEEEEESSCSSSSCCCC
T ss_pred             -CCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChhHccCcCCcC--CCccCCCCeEEEEEEEEEeecCCchhhcCcC
Confidence             799999999999999999999999999999999999999998831  4689999999999999999987777666653

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=148.49  Aligned_cols=96  Identities=39%  Similarity=0.629  Sum_probs=90.0

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC-C
Q 016518           59 WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-S  137 (388)
Q Consensus        59 ~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~-~  137 (388)
                      +..++.||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .+||+++||..+.+ .
T Consensus         3 g~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v--~ip~~~ayG~~~~~~~   80 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL--VIPSELGYGERGAPPK   80 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEE--EECGGGTTTTTCBTTT
T ss_pred             CCcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE--EECHHHCcCCCCCCCC
Confidence            36799999999999999889999999997779999999999999999999999999999999  99999999999876 7


Q ss_pred             CCCCCcEEEEEEEccceee
Q 016518          138 LPPNSVVQFEVELVSWITV  156 (388)
Q Consensus       138 ip~~~~l~~~i~l~~~~~~  156 (388)
                      ||++++++|+|+|+++...
T Consensus        81 Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           81 IPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             BCTTCCEEEEEEEEEEGGG
T ss_pred             cCcCCeEEEEEEEEEeccc
Confidence            9999999999999988653

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.83  E-value=4.9e-20  Score=152.11  Aligned_cols=108  Identities=30%  Similarity=0.439  Sum_probs=96.1

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      .+.++.++++++|++. .|..++.|+++                           |++++.||++||++ +.++.|++|.
T Consensus        26 ~~~gl~~~~l~~G~G~-~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~   76 (133)
T 2y78_A           26 TESGLKYEDLTEGSGA-EARAGQTVSVH---------------------------YTGWLTDGQKFDSS-KDRNDPFAFV   76 (133)
T ss_dssp             CTTSCEEEEEECCSSC-BCCTTSEEEEE---------------------------EEEEETTSCEEEET-TTTTCCEEEE
T ss_pred             CCCCEEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEecc-CcCCCCEEEE
Confidence            4567899999999985 68888988876                           55555688999998 6777899999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~  300 (388)
                      +|.+++++||+.+|.+|++||+++|.|||.++||+.+.   .+.|||+++|+|+|+|++|
T Consensus        77 lG~g~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~---~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           77 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             TTSSSSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEC
T ss_pred             eCCCChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCCC---CCCCCCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999999999887   4679999999999999975

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.83  E-value=8.9e-20  Score=161.99  Aligned_cols=123  Identities=27%  Similarity=0.376  Sum_probs=104.1

Q ss_pred             EEEEEccceeecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceE
Q 016518          146 FEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTV  225 (388)
Q Consensus       146 ~~i~l~~~~~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~  225 (388)
                      +++-+........++.+.++.++++++|+|.. |..++.|+++                           |++++.||++
T Consensus        87 I~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~---------------------------Y~g~l~dG~~  138 (209)
T 3uf8_A           87 IEAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVH---------------------------YTGWLTDGQK  138 (209)
T ss_dssp             EEEECSCTTCCCCEECTTSCEEEEEECCCSCB-CCTTCEEEEE---------------------------EEEEETTSCE
T ss_pred             chhhccccccccccCCCCceEEEEEEcCCCCc-CCCCCEEEEE---------------------------EEEEECCCCE
Confidence            34444333333445567789999999999874 8889988876                           5666678899


Q ss_pred             EeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518          226 FEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       226 fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~  300 (388)
                      ||++ +.++.|++|.+|.+++++||+.+|.+|++||++.|.|||.+|||+.+.   ++.|||+++|+|+|+|++|
T Consensus       139 fdss-~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~---~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          139 FDSS-KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---AGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEES-GGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEC
T ss_pred             EEEc-cccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCC---CCCcCCCCeEEEEEEEEEC
Confidence            9998 777899999999999999999999999999999999999999999987   5679999999999999985

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.83  E-value=9.2e-20  Score=149.20  Aligned_cols=114  Identities=22%  Similarity=0.316  Sum_probs=98.5

Q ss_pred             ccCcCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCC--C
Q 016518          158 DLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYD--G  233 (388)
Q Consensus       158 dv~~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~--~  233 (388)
                      .+..+.++.++++++|.+. ..|..++.|++|                           |++++. ||++||++ +.  .
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~---------------------------Y~g~~~~dG~~fdss-~~~~~   58 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICHRKTKGGDLMLVH---------------------------YEGYLEKDGSLFHST-HKHNN   58 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCSCCCCTTCEEEEE---------------------------EEEEETTTCCEEEEH-HHHTT
T ss_pred             eEECCCCeEEEEEEcCCCCCCcCCCCCEEEEE---------------------------EEEEECCCCcEEEEc-ccCCC
Confidence            3446678999999999842 578888888865                           566665 88999998 53  4


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecC
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~  303 (388)
                      +.|++|.+|.+++++||+.+|.+|++||++.|.|||.+|||+.+.    +.|||+++|+|+|+|+++.+.
T Consensus        59 ~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~----~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           59 GQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK----GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             TCCEEEETTSCSSCHHHHHHSTTCCTTCEEEEEECGGGTTTTTCB----TTBCTTCCEEEEEEEEEEECC
T ss_pred             CcCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChHHhcCCCCC----CCCCCCCeEEEEEEEEEEEcC
Confidence            689999999999999999999999999999999999999999986    589999999999999999764

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.80  E-value=3.4e-19  Score=158.02  Aligned_cols=104  Identities=27%  Similarity=0.407  Sum_probs=93.5

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      .+.++.++++++|+|. .|..++.|+++                           |+|++.||++||++    +.|++|.
T Consensus       115 ~~sGl~y~vl~~G~G~-~p~~gd~V~V~---------------------------Y~g~l~dG~vfDss----~~P~~f~  162 (219)
T 3oe2_A          115 LADGILMTELTPGTGP-KPDANGRVEVR---------------------------YVGRLPDGKIFDQS----TQPQWFR  162 (219)
T ss_dssp             CGGGCEEEEEECCCSC-CCCTTSEEEEE---------------------------EEEECTTSCEEEEC----SSCEEEE
T ss_pred             CCCCeEEEEEecCCCc-cCCCCCEEEEE---------------------------EEEEECCCCEeecc----CCcEEEE
Confidence            4567899999999986 68889988865                           66667789999997    6899999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +|  ++++||+.+|.+|++|++++|+|||.+|||+.+.   ++.|||+++|+|+|+|++|+
T Consensus       163 lG--~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~---~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          163 LD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGA---GDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             ec--chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCC---CCCCCCCCeEEEEEEEEEEe
Confidence            98  8999999999999999999999999999999987   45799999999999999986

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.80  E-value=6.2e-19  Score=163.69  Aligned_cols=116  Identities=34%  Similarity=0.501  Sum_probs=105.0

Q ss_pred             ecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       156 ~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      ..|++  .++++.++++++|+|+..|..++.|+++                           |++++.||++||++ +.+
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   93 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVH---------------------------YTGWLLDGTKFDSS-LDR   93 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTS
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-ccC
Confidence            55777  7889999999999999779999999876                           55566688999998 677


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      +.|++|.+|.+++++||+.+|.+|++||++.|.|||++|||+.+.   ++.||++++|+|+|+|++|..
T Consensus        94 ~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~---~~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A           94 KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS---PPKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             SSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEECcHHhCCCcCc---cCCCCCCCcEEEEEEeeeecc
Confidence            789999999999999999999999999999999999999999987   578999999999999999975

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.78  E-value=7.4e-19  Score=155.93  Aligned_cols=108  Identities=25%  Similarity=0.395  Sum_probs=96.0

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      ...++.++++++|+|. .|..++.|++|                           |.|++.||++||++ +.++.|++|.
T Consensus       104 ~~sGl~y~vl~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~  154 (213)
T 1fd9_A          104 LPSGLQYKVINSGNGV-KPGKSDTVTVE---------------------------YTGRLIDGTVFDST-EKTGKPATFQ  154 (213)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             CCCccEEEEEecCCCc-cCCCCCEEEEE---------------------------EEEEECCCCEEeec-cccCCCEEEE
Confidence            4567899999999985 78888888865                           66677789999999 6777899999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      +|  ++++||+.+|.+|++|++++|.|||.++||+.+.   ++.|||+++|+|+|+|++|.+
T Consensus       155 lg--~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~---~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          155 VS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV---GGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC---SSSCCTTCCEEEEEEEEEEEC
T ss_pred             cC--chhhHHHHHHcCCCCCCEEEEEECchhccCccCC---CCCCCCCCeEEEEEEEEEEEc
Confidence            95  8999999999999999999999999999999886   568999999999999999975

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.78  E-value=8e-19  Score=138.32  Aligned_cols=86  Identities=34%  Similarity=0.512  Sum_probs=77.6

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEE
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (388)
                      +||++++.||++||++ +.++.|++|.+|.+++++||+.+|.+|++||++.|.+||++|||+.+.   ++.|||+++|+|
T Consensus        14 v~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~---~~~Ip~~~~l~f   89 (102)
T 2pbc_A           14 MHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA---PPKIPGGATLVF   89 (102)
T ss_dssp             EEEEEECTTSCEEEES-TTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEE
T ss_pred             EEEEEEECCCCEEEeC-CCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCcCCeEEE
Confidence            3466666688999998 677789999999999999999999999999999999999999999887   568999999999


Q ss_pred             EEEEeeeecC
Q 016518          294 EVEMMDFIKE  303 (388)
Q Consensus       294 ~veL~~~~~~  303 (388)
                      +|+|+++...
T Consensus        90 ~v~l~~v~~~   99 (102)
T 2pbc_A           90 EVELLKIERR   99 (102)
T ss_dssp             EEEEEEEGGG
T ss_pred             EEEEEEeccc
Confidence            9999999764

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.78  E-value=6.9e-19  Score=144.71  Aligned_cols=110  Identities=23%  Similarity=0.336  Sum_probs=94.1

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEc
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~l  241 (388)
                      +.++.++++++|++. .|..++.|++|                           |++++.||++||++ +.++.|++|.+
T Consensus        11 ~~Gl~~~~l~~G~G~-~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~l   61 (129)
T 1u79_A           11 PSGLAFCDKVVGYGP-EAVKGQLIKAH---------------------------YVGKLENGKVFDSS-YNRGKPLTFRI   61 (129)
T ss_dssp             TTSCEEEEEECCSSC-BCCTTCEEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEET
T ss_pred             CCCeEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCCEEEEe
Confidence            457899999999986 57888888876                           55555678899998 66678999999


Q ss_pred             cCCcccchHHHHHcc------ccCCcEEEEEecCCCCCCCccccc--CCCCCCCCCeEEEEEEEeee
Q 016518          242 DEEQVIAGLDRVAAT------MKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       242 G~~~v~~gle~~l~~------M~~Ge~~~v~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~veL~~~  300 (388)
                      |.+++++||+.+|.+      |++||+++|.|||.++||+.+...  ..+.|||+++|+|+|+|++|
T Consensus        62 G~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           62 GVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCCccHHHHHHhcccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999988      999999999999999999987620  02479999999999999986

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.77  E-value=2.8e-18  Score=153.21  Aligned_cols=105  Identities=31%  Similarity=0.545  Sum_probs=93.5

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEc
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~l  241 (388)
                      ..++..+++++|+|. .|..++.|++|                           |+|++.||++||++ +.++.|++|.+
T Consensus       120 ~sGl~y~vl~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~l  170 (224)
T 1q6h_A          120 STGLVYQVVEAGKGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFRL  170 (224)
T ss_dssp             TTSCEEEEEECCSSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEG-GGGTSCEEEEG
T ss_pred             CCceEEEEEecccCc-cccCCCEEEEE---------------------------EEEEeCCCCEEeec-cccCCCEEEEc
Confidence            467889999999986 78888888865                           66677789999999 77788999999


Q ss_pred             cCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       242 G~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      |  ++++||+.+|.+|++|++++|.|||.++||+.+.   + .|||+++|+|+|+|++|.
T Consensus       171 g--~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~---~-~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          171 D--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---P-GIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             G--GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB---T-TBCTTCCEEEEEEEEEEC
T ss_pred             C--CcchhHHHHHcCCCCCCEEEEEECchhhcCcCCC---C-CCCCCCEEEEEEEEEEeC
Confidence            5  8999999999999999999999999999999886   3 499999999999999974

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.76  E-value=1.9e-18  Score=147.24  Aligned_cols=125  Identities=22%  Similarity=0.349  Sum_probs=96.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      .+++||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|++++|  .|||++|||+++      
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v--~Ipp~~AYG~~~------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF--SLEPDAAFGVPS------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEE--EECGGGTTCCCC------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCC------
Confidence            689999999999999999999999987778999999999999999999999999999999  999999999975      


Q ss_pred             CCcEEEEEEEccceeecccC---------cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          141 NSVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       141 ~~~l~~~i~l~~~~~~~dv~---------~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                       ..++..+....+.....+.         .++....-++.+       ..++.|++++||+|+|.++.|+
T Consensus        96 -~~lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~-------v~~~~V~vD~NHPLAGk~L~F~  157 (169)
T 4dt4_A           96 -PDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIRE-------INGDSITVDFNHPLAGQTVHFD  157 (169)
T ss_dssp             -GGGEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEE-------EETTEEEEECSCTTTTCCEEEE
T ss_pred             -hHHEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEE-------EcCCEEEEeCCCccCCCEEEEE
Confidence             3344444443332111111         222211111111       2567999999999999998874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.74  E-value=3e-18  Score=170.70  Aligned_cols=116  Identities=34%  Similarity=0.558  Sum_probs=81.7

Q ss_pred             ecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       156 ~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      ..|++  .++++.++++++|+|+..|..++.|++|                           |+|++.||++||+| +.+
T Consensus        22 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~---------------------------y~~~~~~g~~~dss-~~~   73 (457)
T 1kt0_A           22 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HDR   73 (457)
T ss_dssp             -----------CEEEC--------CCCBTCEEEEE---------------------------EEEEC-----CBC-----
T ss_pred             cccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEE---------------------------EEEEECCCCEEecc-CCC
Confidence            44666  7889999999999999779999999876                           55555678899998 777


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      +.|++|.+|.+++++||+.+|.+|++||++.|+|||.++||..|.   ++.|||+++|+|+|+|++|..
T Consensus        74 ~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~---~~~i~~~~~l~~~v~l~~~~~  139 (457)
T 1kt0_A           74 NEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  139 (457)
T ss_dssp             --CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEChHHhccccCC---CCCCCCCCcEEEEEeeceeec
Confidence            889999999999999999999999999999999999999999987   678999999999999999875

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.74  E-value=2.2e-17  Score=139.02  Aligned_cols=124  Identities=23%  Similarity=0.343  Sum_probs=96.3

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL  138 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~-dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~i  138 (388)
                      ..++.||.|++||++++. ||++|++|+.. .|+.|.+|.+++++||+++|.+|++|++++|  .|||+.+||.++    
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v--~ipp~~aYG~~~----   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV--VIAPEEAYGVYE----   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEE--EECGGGTTCSSC----
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEecHHHcCCCC----
Confidence            568899999999999998 99999999865 8999999999999999999999999999999  999999999975    


Q ss_pred             CCCCcEEEEEEEccceeecccC---------cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          139 PPNSVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       139 p~~~~l~~~i~l~~~~~~~dv~---------~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                         ..+++.+....+ ....+.         .++....-++.       -..++.|++++||+|+|.++.|+
T Consensus        78 ---~~~v~~v~~~~f-~~~~~~~G~~~~~~~~~G~~~~~~V~-------~v~~~~v~vD~NHPLAG~~L~F~  138 (151)
T 2kr7_A           78 ---SSYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQAIIK-------DFSATHVMVDYNHPLAGKTLAFR  138 (151)
T ss_dssp             ---SCEEEEEEGGGG-TTSCCCTTCEEEEEETTTEEEEEEEE-------EECSSEEEEEECCTTSCCCEEEE
T ss_pred             ---cceEEEEcHHHc-CCCCCccCCEEEEECCCCCEEEEEEE-------EECCCEEEEECCCcCCCCEEEEE
Confidence               345555555444 111111         12211111111       22567999999999999998874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.74  E-value=1.8e-17  Score=158.44  Aligned_cols=107  Identities=27%  Similarity=0.535  Sum_probs=97.9

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCc---ccccHHHHhcccccCceE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ---VATGLDNGIITMKKRECA  118 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~---~~~g~~~~l~~m~~Ge~~  118 (388)
                      ..+++|+.|+|+++|+|..+|..||.|+|||++++ +|++|+++     |+.|.+|.|.   ++++|+.||.+|++|+++
T Consensus        21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~   94 (336)
T 1p5q_A           21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   94 (336)
T ss_dssp             -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcCCCCCeE
Confidence            56799999999999999668999999999999998 99999986     8999999887   589999999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCC--CCCCCCcEEEEEEEccceee
Q 016518          119 VFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV  156 (388)
Q Consensus       119 ~v~~~vp~~~~yg~~~~~--~ip~~~~l~~~i~l~~~~~~  156 (388)
                      .+  .++|+++||..|..  .||+++.+.|++.|.++...
T Consensus        95 ~l--~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A  132 (336)
T 1p5q_A           95 IV--YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  132 (336)
T ss_dssp             EE--EECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECC
T ss_pred             EE--EECCccccCcCCCCccCCCCCCeEEEEEEEeecccc
Confidence            99  99999999999987  69999999999999887543

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.71  E-value=2.9e-17  Score=143.44  Aligned_cols=130  Identities=17%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      ++++||+|+|||++++.||++|++|+.. .|+.|.+|.+++||+|+++|.+|++|++++|  .|||+.+||.++..    
T Consensus         2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v--~Ippe~aYGe~~~~----   74 (196)
T 2kfw_A            2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN----   74 (196)
T ss_dssp             CCCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEE--ECSTTTTSSCCCTT----
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EeCcHHhcCCCChh----
Confidence            3789999999999998899999999875 8999999999999999999999999999999  99999999998643    


Q ss_pred             CCcEEEEEEEccceeecccCcCccceeeEeecC--CCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          141 NSVVQFEVELVSWITVVDLSKDGGIVKKILEKG--ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       141 ~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G--~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                         +++.+....+.....+.. +..+......|  .+...-..++.|+++||++|++.++.|+
T Consensus        75 ---lV~~vp~~~f~~~~~~~~-G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~  133 (196)
T 2kfw_A           75 ---LVQRVPKDVFMGVDELQV-GMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_dssp             ---TCEEECGGGCCCSSCCCT-TCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEE
T ss_pred             ---hEEEEEHHHCCCccCccc-CCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEE
Confidence               333333333221111110 11110000001  0012234678999999999999998774

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.71  E-value=6.9e-18  Score=142.42  Aligned_cols=127  Identities=28%  Similarity=0.392  Sum_probs=91.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCC-------------CCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCC
Q 016518           62 PEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (388)
Q Consensus        62 ~~~gd~V~v~y~~~~~dg~~~~ss~~~-------------~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~  128 (388)
                      +++||.|+|||++++ ||++|++|+..             +.|+.|.+|.+++++||+++|.+|++|++++|  .|||++
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v--~Ipp~~   78 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPEK   78 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEE--EECGGG
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEE--EECcHH
Confidence            689999999999999 99999999863             37999999999999999999999999999999  999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEEEEccceeecccCcCccceeeEeecC-CCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          129 RFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       129 ~yg~~~~~~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G-~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      |||+++..       ++..+..-.+.. .++....+  ..+.-.+ .+...-..++.|++++||+|+|.++.|+
T Consensus        79 aYG~~~~~-------~V~~v~~~~f~~-~~~~~~~G--~~~~~~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~  142 (157)
T 3pr9_A           79 AFGKRDPS-------KIKLIPLSEFTK-RGIKPIKG--LTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYR  142 (157)
T ss_dssp             TTCCCCGG-------GEEEEEHHHHHH-TTCCCCTT--CEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEE
T ss_pred             hcCCCChH-------hEEEcCHHHCCc-ccCCcCCC--cEEEecCCCeEEEEEcCCEEEEECCCccCCCeEEEE
Confidence            99998633       333333322221 01110000  0000011 0111122567999999999999998874

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.70  E-value=9.5e-17  Score=137.46  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=93.4

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCCC
Q 016518           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (388)
Q Consensus        62 ~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~~  141 (388)
                      +++||.|+++|++++.||++|++|+.. .|+.|.+|.+++++||+++|.+|++|++++|  .|||+.+||.++..     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v--~ippe~aYG~~~~~-----   74 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN-----   74 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEE--EEETTTSSCCCCTT-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EECcHHhcCCCChh-----
Confidence            789999999999998899999999865 8999999999999999999999999999999  99999999998633     


Q ss_pred             CcEEEEEEEccceeecccC---------cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          142 SVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       142 ~~l~~~i~l~~~~~~~dv~---------~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                        +++.+....+.....+.         .++.+.-+|+.        ..++.|++++|++|+|.++.|+
T Consensus        75 --~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~--------v~~~~V~vD~NHPLAGk~L~F~  133 (171)
T 2k8i_A           75 --LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFN  133 (171)
T ss_dssp             --SEEEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEE--------ECSSEEEEESCCSSCCCEEEEE
T ss_pred             --hEEEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEE--------EcCCEEEEeCCCCCCCCeEEEE
Confidence              34444443332111111         12211111221        2567999999999999998874

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.70  E-value=1e-17  Score=141.08  Aligned_cols=128  Identities=21%  Similarity=0.424  Sum_probs=93.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccC-------------CCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~-------------~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~  127 (388)
                      .+++||.|++||++++.||++|++|+.             ...|+.|.+|.+++++||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v--~ipp~   78 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAE   78 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTT
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEE--EECcH
Confidence            368999999999999889999999973             237999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCcEEEEEEEcccee-ecccCcCccceeeEeecCC-CCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          128 LRFGVEGRDSLPPNSVVQFEVELVSWIT-VVDLSKDGGIVKKILEKGE-RDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       128 ~~yg~~~~~~ip~~~~l~~~i~l~~~~~-~~dv~~d~~v~kkil~~G~-g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      .|||.++..       +++.+.+..+.. ...+. -|   ..+.-.+. +...-..++.|+++|||+|+|.++.|+
T Consensus        79 ~aYG~~~~~-------~v~~v~~~~f~~~~~~~~-~G---~~~~~~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~  143 (151)
T 1ix5_A           79 KAYGNRNEM-------LIQKIPRDAFKEADFEPE-EG---MVILAEGIPATITEVTDNEVTLDFNHELAGKDLVFT  143 (151)
T ss_dssp             TSSCSCCST-------TBCCEETHHHHTSTTCCC-TT---EEEESSSCEEEEEEEETTEEEEECCCSSTTCCEEEE
T ss_pred             HHCCCCCcc-------EEEEEEHHHcCccCCccc-cc---CEEEECCeEEEEEEEcCCEEEEeCCCCCCCCeEEEE
Confidence            999997643       344444443321 01111 00   00000000 001122567999999999999998774

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.67  E-value=5.3e-17  Score=144.95  Aligned_cols=127  Identities=28%  Similarity=0.392  Sum_probs=91.0

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCC-------------CCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCC
Q 016518           62 PEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (388)
Q Consensus        62 ~~~gd~V~v~y~~~~~dg~~~~ss~~~-------------~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~  128 (388)
                      +++||.|++||++++ ||++|++|+..             +.|+.|.+|.+++++||+++|.+|++|++++|  .|||++
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v--~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEE--EECGGG
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEE--EeCcHH
Confidence            688999999999999 99999999853             37999999999999999999999999999999  999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEEEEccceeecccCcCccceeeEeecC-CCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          129 RFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       129 ~yg~~~~~~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G-~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      |||.++..       ++..+..-.+.. .++....|  ..+...| .+...-..++.|++++||+|+|.++.|+
T Consensus        79 AYGe~~~~-------lv~~vp~~~f~~-~~~~~~vG--~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~  142 (231)
T 3prb_A           79 AFGKRDPS-------KIKLIPLSEFTK-RGIKPIKG--LTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYR  142 (231)
T ss_dssp             TTCCCCGG-------GEEEEETHHHHT-TTCCCCTT--CEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEE
T ss_pred             hcCCCChH-------HEEecCHHHCCc-ccCCCCCC--cEEEecCCCEEEEEEcCCEEEEeCCCccCCCEEEEE
Confidence            99998643       333333222211 01110000  0000000 0111122467999999999999998774

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.63  E-value=6.3e-16  Score=123.53  Aligned_cols=90  Identities=23%  Similarity=0.382  Sum_probs=74.6

Q ss_pred             EEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcC-CCCCCC
Q 016518           53 LKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLP-SELRFG  131 (388)
Q Consensus        53 l~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp-~~~~yg  131 (388)
                      ++.-++ ..++.||.|+|||++++ ||++|++++  +.|+.|.+|.+++|+||+++|.+|++|++++|  .|| |.. ||
T Consensus        22 ~~~v~~-~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v--~i~fP~~-Yg   94 (113)
T 1hxv_A           22 MVDVSD-KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSD-YH   94 (113)
T ss_dssp             --------CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTT-SS
T ss_pred             EEecCC-CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEE--EEeCchh-hC
Confidence            333334 57999999999999998 999999996  48999999999999999999999999999999  885 333 88


Q ss_pred             CCCCCCCCCCCcEEEEEEEccc
Q 016518          132 VEGRDSLPPNSVVQFEVELVSW  153 (388)
Q Consensus       132 ~~~~~~ip~~~~l~~~i~l~~~  153 (388)
                      ..+    .++++++|+|+|+++
T Consensus        95 ~~~----~~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           95 VKE----LQSKPVTFEVVLKAI  112 (113)
T ss_dssp             SSG----GGSCCCEEEEEECCB
T ss_pred             cCC----CCCCEEEEEEEEEEE
Confidence            765    368999999999876

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.63  E-value=7.8e-16  Score=130.16  Aligned_cols=118  Identities=18%  Similarity=0.236  Sum_probs=91.6

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCCC
Q 016518           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (388)
Q Consensus        62 ~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~~  141 (388)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.+++++||+++|.+|++|++++|  .|||+.+||.++       
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v--~ipp~~aYG~~~-------   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQA--HVPAEKAYGPHD-------   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEE--EECGGGTTCCCC-------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEE--EECcHHHcCCCC-------
Confidence            67899999999999 8999999986     89999999999999999999999999999  999999999874       


Q ss_pred             CcEEEEEEEccceeecccC---------cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          142 SVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       142 ~~l~~~i~l~~~~~~~dv~---------~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      ..+++.+.+..+.....+.         .++....-++.       -..++.|++++|++|+|.++.|+
T Consensus        68 ~~lv~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~-------~v~~~~v~vD~NHPLAGk~L~F~  129 (158)
T 3cgm_A           68 PEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVV-------AVEGEEVTVDFNHPLAGKDLDFQ  129 (158)
T ss_dssp             GGGEEEEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEE-------EEETTEEEEECSCTTTTCCEEEE
T ss_pred             cceEEEEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEE-------EECCCEEEEeCCccccCCEEEEE
Confidence            4566666665553211111         12221111111       12567999999999999998874

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.51  E-value=1.9e-14  Score=122.45  Aligned_cols=64  Identities=20%  Similarity=0.365  Sum_probs=57.9

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||++++.||++||++ +.+++|+.|.+|.+++++||+.+|.+|++||++.|.|||++|||+++.
T Consensus        33 v~Y~g~l~dG~vfDss-~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           33 VHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             EEEEEEETTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEECCCCEEEec-CCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            4577777789999998 666789999999999999999999999999999999999999998653

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.48  E-value=5.1e-14  Score=118.70  Aligned_cols=63  Identities=29%  Similarity=0.463  Sum_probs=56.8

Q ss_pred             eEEEEeecCceEEeecCCCC-------------CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYDG-------------EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~-------------~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||+|++ ||++||+| +..             +.|++|.+|.+++++||+.+|.+|++||++.|.|||++|||+++.
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~   85 (157)
T 3pr9_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (157)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEE-CCEEEEec-cccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            6788888 89999998 442             379999999999999999999999999999999999999998764

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.45  E-value=1.5e-13  Score=109.73  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEec-CCCCCCCcccccCCCCCCCCCeEE
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTIN-HEYGFGNVEAKRDLATIPSCAKLY  292 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~-~~~~yg~~~~~~~~~~ip~~~~l~  292 (388)
                      ++|++++ ||++||++ +  +.|+.|.+|.++++|||+.+|.+|++|+++.|.|| |.. ||..+.        ++++|+
T Consensus        38 v~Y~g~~-dG~~fdss-~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~--------~g~~l~  104 (113)
T 1hxv_A           38 IDFTGIV-DNKKLASA-S--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL--------QSKPVT  104 (113)
T ss_dssp             EEEEEEE-TTEECSTT-C--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG--------GSCCCE
T ss_pred             EEEEEEE-CCEEcccC-C--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC--------CCCEEE
Confidence            5677777 88999998 2  68999999999999999999999999999999996 443 887543        568999


Q ss_pred             EEEEEeeee
Q 016518          293 YEVEMMDFI  301 (388)
Q Consensus       293 f~veL~~~~  301 (388)
                      |+|+|++|.
T Consensus       105 F~V~l~~Vk  113 (113)
T 1hxv_A          105 FEVVLKAIK  113 (113)
T ss_dssp             EEEEECCBC
T ss_pred             EEEEEEEEC
Confidence            999999873

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.42  E-value=3.2e-13  Score=120.52  Aligned_cols=63  Identities=29%  Similarity=0.463  Sum_probs=56.7

Q ss_pred             eEEEEeecCceEEeecCCCC-------------CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYDG-------------EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~-------------~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||+|++ ||++||+| +..             +.|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+++.
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AYGe~~~   85 (231)
T 3prb_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (231)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEE-CCEEEEec-cchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            6788888 99999998 432             379999999999999999999999999999999999999998763

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.42  E-value=1.4e-12  Score=111.61  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=56.1

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  277 (388)
                      ++|++++.||++||++ +. .+|++|.+|.++++|||+.+|.+|++|+++.|.|||+.|||+++
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             EEEEEEETTSCEEEEC-CS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             EEEEEEECCCCEEeec-cC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            5677777789999998 43 37999999999999999999999999999999999999999874

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.40  E-value=8.5e-13  Score=110.89  Aligned_cols=63  Identities=32%  Similarity=0.590  Sum_probs=56.4

Q ss_pred             eEEEEeec-CceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~-dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||++++. ||++||++ +. ..|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||+++.
T Consensus        15 v~Y~g~~~~dG~~fdss-~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           15 IEYEVREQGSSIVLDSN-IS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             EEEEEEESSCSCEEEES-TT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             EEEEEEECCCCCEEEeC-CC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            56777776 89999998 43 479999999999999999999999999999999999999998753

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.39  E-value=2.6e-13  Score=113.99  Aligned_cols=64  Identities=34%  Similarity=0.609  Sum_probs=56.5

Q ss_pred             eEEEEeecCceEEeecCCC-------------CCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYD-------------GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~-------------~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||++++.||++||+| +.             ...|++|.+|.+++++||+.+|.+|++|+++.|.|||+.|||+++.
T Consensus        10 v~Y~g~~~dG~~fdss-~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~   86 (151)
T 1ix5_A           10 VDYIGKLESGDVFDTS-IEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ECCEECCTTSCCCEES-CHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EEEEEEECCCCEEEec-chhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHCCCCCc
Confidence            5677777788899998 43             3469999999999999999999999999999999999999998764

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.38  E-value=1.8e-12  Score=113.08  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=55.9

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  277 (388)
                      ++|++++.||++||++ +. ..|++|.+|.++++|||+.+|.+|++|+++.|.|||+.|||+++
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             EEEEEEETTTEEEEEC-CT-TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             EEEEEEECCCCEEEec-CC-CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            5577777789999998 43 47999999999999999999999999999999999999999875

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.25  E-value=1.2e-11  Score=104.38  Aligned_cols=58  Identities=17%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      ++|+++ .||++||++ +     +.|.+|.++++|||+.+|.+|++|+++.|.|||+.|||+++.
T Consensus        11 v~Y~g~-~dG~~fdss-~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A           11 IRYTLQ-VEGEVLDQG-E-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             EEEEEE-ETTEEEEEE-E-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEE-ECCEEEEee-E-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            567777 789999998 3     999999999999999999999999999999999999998753

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.18  E-value=4.5e-11  Score=117.44  Aligned_cols=89  Identities=21%  Similarity=0.382  Sum_probs=80.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip  139 (388)
                      ..++.||.|++||+++. ||+.|++++  +.|+.|.+|.|+++|||+.+|.||++|+++.|  .+|+..+||..+    .
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v--~v~~~~~yg~~~----l  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTI--DVTFPEEYHAEN----L  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEE--EEECCTTCSCTT----T
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEE--EECCchhhCCCC----C
Confidence            56899999999999994 999999987  48999999999999999999999999999999  999999999765    3


Q ss_pred             CCCcEEEEEEEccceeec
Q 016518          140 PNSVVQFEVELVSWITVV  157 (388)
Q Consensus       140 ~~~~l~~~i~l~~~~~~~  157 (388)
                      +|.++.|+|+|+++....
T Consensus       227 ag~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          227 KGKAAKFAINLKKVEERE  244 (432)
T ss_dssp             SSCEEEEEEECCEECCEE
T ss_pred             CCceEEEEEEEEEEeccC
Confidence            689999999999887543

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.08  E-value=8e-11  Score=114.13  Aligned_cols=98  Identities=21%  Similarity=0.460  Sum_probs=79.0

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip  139 (388)
                      ..++.||.|++||+++ .||+.|+++.  +.|+.|.+|.|+++|||+.+|.||++|+++.|++.+|.+  |+..+    .
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~d--y~~~~----l  229 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPED--YHAEN----L  229 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTT--CSCTT----T
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccc--cccCC----C
Confidence            4689999999999998 5999999984  479999999999999999999999999999994444554  55443    2


Q ss_pred             CCCcEEEEEEEccceeecccCcCccce
Q 016518          140 PNSVVQFEVELVSWITVVDLSKDGGIV  166 (388)
Q Consensus       140 ~~~~l~~~i~l~~~~~~~dv~~d~~v~  166 (388)
                      +|.++.|+|+|+.+....-..-|..+.
T Consensus       230 aGk~~~F~V~v~~i~~~~lpeldDEfa  256 (392)
T 1t11_A          230 KGKAAKFAIKVNKVEARELPELNDEFV  256 (392)
T ss_dssp             SSCEEEECCCEEEEEEEECCCCSTGGG
T ss_pred             CCCeEEEEEEEEEEEcCCCCCcCHHHH
Confidence            789999999999987644333333333

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.91  E-value=2.6e-09  Score=104.90  Aligned_cols=77  Identities=10%  Similarity=0.194  Sum_probs=66.9

Q ss_pred             eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEE
Q 016518          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (388)
                      +||+|+. ||+.|+++ +  +.|+.|.+|.++++|||+.+|.+|++|++..|.+|+..+||..+.        +|.+++|
T Consensus       166 i~y~g~~-dG~~fd~~-~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------ag~~~~F  233 (432)
T 1w26_A          166 IDFTGSV-DGEEFEGG-K--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------KGKAAKF  233 (432)
T ss_dssp             ECEEEES-SSCBCSSC-C--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------SSCEEEE
T ss_pred             EEEEEee-CCeEccCC-C--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------CCceEEE
Confidence            3455653 78888887 3  689999999999999999999999999999999999999997543        5789999


Q ss_pred             EEEEeeeec
Q 016518          294 EVEMMDFIK  302 (388)
Q Consensus       294 ~veL~~~~~  302 (388)
                      +|+|+++..
T Consensus       234 ~V~v~~v~~  242 (432)
T 1w26_A          234 AINLKKVEE  242 (432)
T ss_dssp             EEECCEECC
T ss_pred             EEEEEEEec
Confidence            999999975

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.78  E-value=8.9e-09  Score=86.45  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=64.1

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC---CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~---~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++++++.+..++..||.+|+.|+|..|+..|++|+.+++.   ....+++++..+......+|+|+|.||+++++|.+|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5788999999999999999999999999999999998743   1223455667778889999999999999999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=4.9e-08  Score=84.72  Aligned_cols=98  Identities=28%  Similarity=0.309  Sum_probs=74.2

Q ss_pred             eEEEEEEEeeeecCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChH-HHHHHHHHHHH
Q 016518          290 KLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVS  368 (388)
Q Consensus       290 ~l~f~veL~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~-~~~~~~~~~~~  368 (388)
                      .......+..++..++.|.|+.+++...+..++..|+.+|+.|+|.+|+..|.+|+.+.+........ .......+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            44455677889999999999999999999999999999999999999999999999987664433322 23334566789


Q ss_pred             hhhHHHHHHHHccCchhhh
Q 016518          369 CWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       369 ~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++.|+|.|++++++|.+|+
T Consensus        90 ~~~~la~~~~~~~~~~~A~  108 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAI  108 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHH
Confidence            9999999999999999986

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.64  E-value=1.9e-08  Score=97.43  Aligned_cols=76  Identities=9%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             EEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEE
Q 016518          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (388)
Q Consensus       215 ~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~  294 (388)
                      ||.|+. ||+.|+++   .+.|+.|.+|.++++|||+.+|.+|++|++..|.++....||..+.        +|.+++|+
T Consensus       170 ~y~g~~-dG~~fd~~---~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l--------aGk~~~F~  237 (392)
T 1t11_A          170 DFVGSI-DGVEFEGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL--------KGKAAKFA  237 (392)
T ss_dssp             EEEEES-SSSCCTTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT--------SSCEEEEC
T ss_pred             EEEEEE-CCEEccCC---CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC--------CCCeEEEE
Confidence            344542 67777766   3579999999999999999999999999999999974456775332        67899999


Q ss_pred             EEEeeeec
Q 016518          295 VEMMDFIK  302 (388)
Q Consensus       295 veL~~~~~  302 (388)
                      |+|++|..
T Consensus       238 V~v~~i~~  245 (392)
T 1t11_A          238 IKVNKVEA  245 (392)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEc
Confidence            99999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.55  E-value=1.3e-07  Score=79.51  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             cCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       309 l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      |.|-.....|..++..||.+|+.|+|++|+.+|++||++.+..+...   ..........+|+|++.|+.++++|++|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            44445577899999999999999999999999999999887633211   001122445699999999999999999973

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.49  E-value=2.4e-07  Score=74.75  Aligned_cols=59  Identities=25%  Similarity=0.377  Sum_probs=52.5

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.|...|..||.+|+.|+|++|+..|++|+.+.+..               ..+|+|+|.||+++++|++|+
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~   62 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECV   62 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHH
Confidence            45678889999999999999999999999999865432               578999999999999999997

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.38  E-value=5.9e-07  Score=72.39  Aligned_cols=57  Identities=37%  Similarity=0.532  Sum_probs=45.3

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.|+.++..||.+|+.|+|++|+..|++|+.+-+..               ..+|.|+|.|++++++|++|+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~   67 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRAL   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHH
Confidence            468889999999999999999999999999865432               356666777777777766665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.11  E-value=2.6e-06  Score=81.89  Aligned_cols=78  Identities=31%  Similarity=0.436  Sum_probs=64.4

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.++.+..+..++..|+.+|+.|+|++|+..|++|+++++... ....++...+......+|+|+|.||+++++|++|+
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            4788999999999999999999999999999999999765421 11223333456778899999999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.83  E-value=3.4e-05  Score=61.03  Aligned_cols=56  Identities=25%  Similarity=0.313  Sum_probs=44.1

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.+|+.|+|.+|+..|++|+...+..               ..++.|+|.|++++++|++|+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~   58 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAI   58 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHH
Confidence            56788899999999999999999999999865432               356667777777777776665

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.78  E-value=3e-05  Score=75.98  Aligned_cols=86  Identities=12%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      .++.||.|+|+|+++ .||..|+++..  .++.|.+|++.  + |+.+|.||++|++..|++++               +
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF---------------a  212 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY---------------E  212 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE---------------T
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee---------------C
Confidence            578999999999987 59999998753  68888999887  3 99999999999999995433               4


Q ss_pred             CCcEEEEEEEccceeecccCcCcccee
Q 016518          141 NSVVQFEVELVSWITVVDLSKDGGIVK  167 (388)
Q Consensus       141 ~~~l~~~i~l~~~~~~~dv~~d~~v~k  167 (388)
                      |....|.|.+..+....-..-|..+.+
T Consensus       213 Gk~a~F~VtV~~Ik~~~lPEldDEfak  239 (433)
T 3gty_X          213 GKKYTYKLEVEEVYKRTLPEIGDELAK  239 (433)
T ss_dssp             TEEEEEEEEEEEEEEECCCCSSHHHHH
T ss_pred             CCeEEEEEEEEEEEEecCCcccHHHHH
Confidence            678899999998876544333434433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=5.6e-05  Score=57.79  Aligned_cols=56  Identities=29%  Similarity=0.432  Sum_probs=47.5

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.+|+.|+|.+|+..|++|+...+..               ..++.|+|.|++++++|++|+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~   58 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAI   58 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHH
Confidence            35667889999999999999999999999865432               467889999999999999886

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.45  E-value=0.00023  Score=59.11  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=43.5

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...+..+...|+.+|+.|+|.+|+..|++|+.+.+..               ..++.|++.||+++++|++|+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~   65 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAA   65 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHH
Confidence            3567788899999999999999999999999865432               345566666666666666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.36  E-value=0.00035  Score=53.89  Aligned_cols=62  Identities=15%  Similarity=0.036  Sum_probs=49.4

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+-+.|+.+|+.++|..|+..|++|++..+......        ..+..++.|+|.|+.+++++..|+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~   66 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKAL   66 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHH
Confidence            34556789999999999999999999999875432111        123578899999999999999986

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.18  E-value=0.00069  Score=53.73  Aligned_cols=55  Identities=31%  Similarity=0.381  Sum_probs=37.6

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|+.+|+.|+|..|+..|++|+...+..               ..++.|+|.|++++++|++|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~   63 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQAL   63 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHH
Confidence            5567788888999999999999999998865432               234555555555555555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.15  E-value=0.00082  Score=55.70  Aligned_cols=31  Identities=10%  Similarity=-0.002  Sum_probs=21.6

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..+|+.|+|.+|+..|++|+.+-
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~   66 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD   66 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4455666777777777777777777777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.15  E-value=0.0011  Score=54.15  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+.+..+...|+.++..|+|..|+..|.+|+...+..               ..++.|+|.|++++++|.+|+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~   67 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYAL   67 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHH
Confidence            46678899999999999999999999999999999865432               234455555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.14  E-value=0.00088  Score=50.85  Aligned_cols=54  Identities=9%  Similarity=0.031  Sum_probs=46.3

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+-..|..+++.|+|.+|+..|++|++.-+..               ...|.|+|.||.++++|++|+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~   61 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---------------VGTYYHLGKLYERLDRTDDAI   61 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            345578999999999999999999999865443               358899999999999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.13  E-value=0.00079  Score=55.79  Aligned_cols=54  Identities=15%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-....|.-+++.|+|.+|+..|++|+.+-+..               ...+.|++.||++++++++|+
T Consensus        71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---------------~~~~~~lg~~~~~lg~~~eA~  124 (151)
T 3gyz_A           71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---------------YTPVFHTGQCQLRLKAPLKAK  124 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---------------CHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHH
Confidence            345567999999999999999999999976554               367899999999999999986

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.04  E-value=0.0012  Score=52.71  Aligned_cols=59  Identities=34%  Similarity=0.452  Sum_probs=46.2

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.+++.|+|.+|+..|+++++..+.            ......++.|+|.|++++++|++|+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~   85 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAE   85 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHH
Confidence            3566778899999999999999999999985432            1224567788888888888888775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.95  E-value=0.0011  Score=49.65  Aligned_cols=51  Identities=16%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHH-hhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS-CWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~NlA~c~lKl~~~~~ai  387 (388)
                      -..|..+++.|+|.+|+..|++++..-+..               .. ++.|+|.|+.++++|++|+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~lg~~~~~~~~~~~A~   55 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG---------------KDEAYYLMGNAYRKLGDWQKAL   55 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHcCCHHHHH
Confidence            457899999999999999999999864432               34 8899999999999999986

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.93  E-value=0.0014  Score=49.83  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=23.7

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      .+..+...|+.++..|+|..|+..|.+++...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   35 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP   35 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            355666777777778888888888888777543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.90  E-value=0.0025  Score=46.38  Aligned_cols=55  Identities=27%  Similarity=0.415  Sum_probs=46.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|..+++.++|.+|+..|++|+...+..               ...+.|+|.|+.++++|++|+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~   63 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAI   63 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            4556678999999999999999999999864332               356789999999999999886

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.86  E-value=0.0022  Score=49.62  Aligned_cols=56  Identities=30%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.++..|+|..|+..|.+++...+..               ..++.|+|.|++++++|++|+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~   58 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCR   58 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHH
Confidence            46677889999999999999999999999865332               467899999999999999986

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.85  E-value=0.0023  Score=49.70  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.-+...|.-+++.|+|.+|+..|++|+...+..               ..++.|++.|+.++++|++|+
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------QALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHcCCHHHHH
Confidence            34556778999999999999999999999875442               467899999999999999986

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.76  E-value=0.0024  Score=52.27  Aligned_cols=54  Identities=9%  Similarity=-0.068  Sum_probs=36.9

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...-..|+-+|+.|+|++|+..|++|+++-+..               ...|.|++.||.++++|++|+
T Consensus        32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A           32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------PKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCchHHHH
Confidence            334456888888888999998888888864432               345566666666666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.73  E-value=0.0031  Score=50.80  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=21.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..+++.|+|.+|+..|++++..-
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   48 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD   48 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC
Confidence            3445566777777788888888887777654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.73  E-value=0.0031  Score=51.62  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=21.6

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..+++.|+|.+|+..|++|+..-
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   51 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD   51 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            3445566777777777777777777777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.73  E-value=0.0029  Score=50.27  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|.-+++.|+|.+|+..|++|+.+-+..               ...|.|++.|+.++++|++|+
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~  101 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---------------IKGYIRKAACLVAMREWSKAQ  101 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---------------hHHHHHHHHHHHHCCCHHHHH
Confidence            3445678999999999999999999999864332               467999999999999999986

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.72  E-value=0.0035  Score=49.77  Aligned_cols=62  Identities=13%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|.-+++.|+|.+|+..|.+|+.+.+.....        ......+|.|++.|+.++++|++|+
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD--------YKLIAKAMSRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--------hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3445678999999999999999999999976543211        2345678999999999999999987

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.72  E-value=0.0013  Score=64.88  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             ccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (388)
Q Consensus       306 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~  385 (388)
                      ...++.+++...+..+...|+.+|+.|+|.+|+..|++|+...+..               ..++.|+|.|++++++|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHH
Confidence            4567888999999999999999999999999999999999865432               4677888888888888887


Q ss_pred             hh
Q 016518          386 IR  387 (388)
Q Consensus       386 ai  387 (388)
                      |+
T Consensus        78 A~   79 (537)
T 3fp2_A           78 VI   79 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.70  E-value=0.002  Score=53.98  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+-..|+.+++.|+|++|+..|++|++.-+..               ...+.++|.||.++++|++|+
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~a~   59 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---------------VETLLKLGKTYMDIGLPNDAI   59 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            345678999999999999999999999864432               467889999999999998886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0025  Score=62.17  Aligned_cols=59  Identities=31%  Similarity=0.401  Sum_probs=46.7

Q ss_pred             hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++.+.+..+...|+.+|+.|+|.+|+..|++++...+.                ..++.|+|.|++++++|++|+
T Consensus         1 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~   59 (514)
T 2gw1_A            1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVV   59 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHH
Confidence            46778999999999999999999999999999986531                245666666666666666664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.64  E-value=0.0049  Score=47.50  Aligned_cols=37  Identities=32%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +.....+..+...|+.++..|+|..|+..|.+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~   42 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN   42 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            3444566777778888888888888888888888754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.60  E-value=0.0029  Score=49.28  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+..+...|+.+++.|+|..|+..|.+++...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   46 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN   46 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            35566677888888888888888888888754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.53  E-value=0.0042  Score=51.93  Aligned_cols=53  Identities=9%  Similarity=-0.027  Sum_probs=45.5

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....|.-+++.|+|++|+..|+++++.-+..               ..++.|+|.||.++++|++|+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---------------IRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---------------hhHHHHHHHHHHHCCCHHHHH
Confidence            35567999999999999999999999865432               467899999999999999987

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.52  E-value=0.0045  Score=51.71  Aligned_cols=69  Identities=19%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh------------HHHHHHHHHHHHhhhHHHHHHHHccCch
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD------------DEQKLVKSLRVSCWLNSAACCLKLKDYQ  384 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~------------~~~~~~~~~~~~~~~NlA~c~lKl~~~~  384 (388)
                      .+..+--.|+.+|.+++|.+|...|++||.+.........            .......  -+.+...+|.||++++++.
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~--e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPS--EIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCC--HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccc--hHHHHHHHHHHHHHHCCHH
Confidence            3445566799999999999999999999987753211100            0000000  1234566999999999999


Q ss_pred             hhh
Q 016518          385 GIR  387 (388)
Q Consensus       385 ~ai  387 (388)
                      +||
T Consensus       140 ~Ai  142 (167)
T 3ffl_A          140 DAI  142 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            997

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.52  E-value=0.0046  Score=50.51  Aligned_cols=52  Identities=17%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....|.-+++.|+|.+|+..|++|+.+-+..               ...+.|++.|+++++++++|+
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~~A~  109 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---------------PRFPFHAAECLLQXGELAEAE  109 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHH
Confidence            4567889999999999999999999875543               367899999999999999986

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.51  E-value=0.0048  Score=49.68  Aligned_cols=52  Identities=25%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....|.-+++.|+|.+|+..|++|+.+-+..               ...+.|++.|++++++|++|+
T Consensus        55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~  106 (142)
T 2xcb_A           55 FLGLGACRQSLGLYEQALQSYSYGALMDINE---------------PRFPFHAAECHLQLGDLDGAE  106 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHH
Confidence            4567888999999999999999999975543               357899999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0052  Score=48.00  Aligned_cols=54  Identities=19%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+...|.-+++.|+|.+|+..|++|+.+-+..               ...+.|+|.|+.++++|++|+
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~   92 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------VRAYIRKATAQIAVKEYASAL   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHhCHHHHH
Confidence            446678999999999999999999999865432               467899999999999999986

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.46  E-value=0.0045  Score=60.42  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=46.6

Q ss_pred             CceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       222 dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      ||..|+++   .+.++.|.+|.+.  + |+.+|.+|++|+...|.+.-                 +|.+..|.|+|.+|.
T Consensus       170 dG~~~~~~---~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-----------------aGk~a~F~VtV~~Ik  226 (433)
T 3gty_X          170 EEGKKLTS---REYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-----------------EGKKYTYKLEVEEVY  226 (433)
T ss_dssp             TTSCEEEE---EEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-----------------TTEEEEEEEEEEEEE
T ss_pred             CCEECcCC---CCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-----------------CCCeEEEEEEEEEEE
Confidence            56667765   2367888888877  4 99999999999999998832                 356899999999998


Q ss_pred             c
Q 016518          302 K  302 (388)
Q Consensus       302 ~  302 (388)
                      .
T Consensus       227 ~  227 (433)
T 3gty_X          227 K  227 (433)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.35  E-value=0.0039  Score=46.75  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHc-cCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl-~~~~~ai  387 (388)
                      +...|.-+++.|+|++|+..|++++...+.  .           ....++.|+|.|+.++ +++++|+
T Consensus        43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~-----------~~~~~~~~l~~~~~~~~~~~~~A~   97 (112)
T 2kck_A           43 WLMKGKALYNLERYEEAVDCYNYVINVIED--E-----------YNKDVWAAKADALRYIEGKEVEAE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--T-----------TCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCcc--c-----------chHHHHHHHHHHHHHHhCCHHHHH
Confidence            445677777778888888888887765432  0           0135678888888888 8888875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.31  E-value=0.0076  Score=46.32  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=45.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|..+++.|+|.+|+..|++|+..-+..               ...+.|+|.|+.+++++++|+
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------------SVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            345577899999999999999999999864432               457799999999999999986

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.30  E-value=0.0072  Score=49.76  Aligned_cols=54  Identities=15%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+...|.-+++.|+|.+|+..|++|+.+-+..               ...+.|++.||.++++|++|+
T Consensus        46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~   99 (164)
T 3sz7_A           46 IYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---------------SKAWSRLGLARFDMADYKGAK   99 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHH
Confidence            345678999999999999999999999865432               578899999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.29  E-value=0.0051  Score=51.34  Aligned_cols=67  Identities=18%  Similarity=0.051  Sum_probs=48.4

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +...-..|..+.+.|+|++|+..|.+||.+++.....+++.    ....+..+.|++.|+.++++|++|++
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence            34677889999999999999999999999733211112111    11112334999999999999999973

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.29  E-value=0.0068  Score=52.63  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      ..+...|+.+|+.|+|.+|+..|.+|+...+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   38 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN   38 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence            4566788899999999999999999998654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.28  E-value=0.0063  Score=47.80  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=22.6

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      .-..|..+++.|+|.+|+..|++|+..-+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P   48 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEP   48 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            34567888888888888888888887544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.26  E-value=0.0075  Score=54.95  Aligned_cols=63  Identities=11%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.-+...|+-++..|+|++|+..|.+|+..+..... .       ......++.|++.||.++++|++|+
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~  216 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4556778899999999999999999999987754321 1       3355779999999999999999986

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.22  E-value=0.009  Score=44.65  Aligned_cols=52  Identities=23%  Similarity=0.377  Sum_probs=44.0

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...|..+++.|+|.+|+..|.+++...+..               ...+.|+|.|+.++++|++|+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~   60 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAV   60 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHH
Confidence            3457888999999999999999999975432               356789999999999999885

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.19  E-value=0.0074  Score=46.97  Aligned_cols=54  Identities=6%  Similarity=0.003  Sum_probs=32.0

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+++.|+|.+|+..|.+++...+...            .....+.++|.|+.+++++++|+
T Consensus        43 ~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~~~~la~~~~~~g~~~~A~   96 (129)
T 2xev_A           43 YWLGESYYATRNFQLAEAQFRDLVSRYPTHD------------KAAGGLLKLGLSQYGEGKNTEAQ   96 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTST------------THHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHCCCCc------------ccHHHHHHHHHHHHHcCCHHHHH
Confidence            3445555555666666666666555432211            12456777888888888887775

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.17  E-value=0.0091  Score=54.38  Aligned_cols=63  Identities=11%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+-++..|+|.+|+..|.+|+.+.+..+..        ..+...++.|+|.||.++++|++|+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHH
Confidence            35567788999999999999999999999876543211        1222467788888888888888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.01  E-value=0.012  Score=48.24  Aligned_cols=55  Identities=5%  Similarity=-0.008  Sum_probs=47.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+-..|.-+++.|+|..|+..|.+|+.+-+..               ...|.++|.||.++++|++|+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~  117 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---------------EKALFRRAKARIAAWKLDEAE  117 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---------------hHHHHHHHHHHHHHhcHHHHH
Confidence            4456678999999999999999999999864332               578999999999999999986

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.93  E-value=0.015  Score=45.61  Aligned_cols=54  Identities=15%  Similarity=0.139  Sum_probs=46.1

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+...|.-+++.|+|..|+..|.+|+...+..               ...+.|+|.|+.++++|++|+
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~   97 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDGQS---------------VKAHFFLGQCQLEMESYDEAI   97 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            345667899999999999999999999865432               468899999999999999986

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.91  E-value=0.014  Score=47.54  Aligned_cols=55  Identities=15%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|.+|+..|++|+++-+..               ..++.|+|.++++++++.+|+
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~aa  119 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---------------KDLVLKIAELLCKNDVTDGRA  119 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHCSSSSHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHH
Confidence            4456678999999999999999999999865442               467899999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.89  E-value=0.0036  Score=61.89  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=13.1

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.|+|.||.++++|++|+
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            45666677777777666664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.89  E-value=0.013  Score=52.02  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=48.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+-..|..+|+.|+|.+|+..|++++...+...            .....+.++|.||+++++|.+|+
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~lg~~~~~~~~~~~A~   72 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------------WAADAQFYLARAYYQNKEYLLAA   72 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------------THHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------------chHHHHHHHHHHHHHhCcHHHHH
Confidence            45667889999999999999999999998665421            23567899999999999999986

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.87  E-value=0.013  Score=45.41  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+-..|..+++.|+|.+|+..|.+++...+....            ....+.+++.|++++++|++|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~   59 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAE   59 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHH
Confidence            4556789999999999999999999998877662            2367789999999999999885

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=95.81  E-value=0.012  Score=61.26  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+..+...|+-+++.|+|++|+..|++|+++-
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~   39 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF   39 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45566667777777777777777777777754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.81  E-value=0.012  Score=46.21  Aligned_cols=54  Identities=15%  Similarity=-0.045  Sum_probs=45.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ......|.-++..|++.+|+..|++|+.+-+..               ...+.|++.|+.+++++++|+
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~la~~~~~~g~~~~A~  105 (121)
T 1hxi_A           52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------------IAVHAALAVSHTNEHNANAAL  105 (121)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            345567889999999999999999999865432               457799999999999999886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.76  E-value=0.019  Score=45.69  Aligned_cols=33  Identities=12%  Similarity=0.026  Sum_probs=19.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      .+..+...|..++..|+|.+|+..|.+|+.+.+
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   40 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK   40 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            444555556666666666666666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.74  E-value=0.017  Score=49.20  Aligned_cols=54  Identities=7%  Similarity=0.017  Sum_probs=42.1

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|..+++.|+|.+|+..|.+|+...+..               ...+.|+|.|++++++|++|+
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~   91 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAI   91 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHH
Confidence            345667888888888888888888888754321               467889999999999999886

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.71  E-value=0.019  Score=44.37  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=45.1

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-++..++|.+|+..|.+|+...+..               ..++.|+|.|++++++|++|+
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~  104 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---------------IKGYTRKAAALEAMKDYTKAM  104 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHHhhHHHHH
Confidence            345667888999999999999999999864432               467899999999999999886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.70  E-value=0.024  Score=45.08  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|..++..|+|.+|+..|.+|+.+.+....         ......++.|+|.|+..+++|++|+
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~  109 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAI  109 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            445667888999999999999999999987754321         1223455666666666666666654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.66  E-value=0.017  Score=50.29  Aligned_cols=57  Identities=9%  Similarity=0.020  Sum_probs=46.3

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+-..|..+|+.|+|.+|+..|.+++...+...            .....+.+++.|+.++++|++|+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~lg~~~~~~~~~~~A~   61 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQ   61 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------------THHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHH
Confidence            4456778999999999999999999998654422            12357789999999999999987

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.61  E-value=0.028  Score=42.61  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=15.7

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      +...|..++..|+|..|+..|.+++..
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~   38 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALEL   38 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344555556666666666666666554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=95.56  E-value=0.014  Score=43.04  Aligned_cols=68  Identities=18%  Similarity=0.079  Sum_probs=47.8

Q ss_pred             cCchh-HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHH
Q 016518          309 MNNQG-KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       309 l~~~e-~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      |+..+ .+..|..+-.+|.++=+.|+|++|+.+|..|+.+|.... ...++..+..-..++.=|.++|.-
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~   70 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISY   70 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45556 778999999999999999999999999999999985310 011222333445556666666643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.52  E-value=0.023  Score=48.96  Aligned_cols=50  Identities=18%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|.-+++.|+|.+|+..|++|+..-+..               ...+.|++.|++++++|++|+
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~  108 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQEKDAL  108 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            47999999999999999999999865442               477899999999999999886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.49  E-value=0.028  Score=42.19  Aligned_cols=53  Identities=17%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -+...|.-+++.|+|..|+..|.+++...+..               ..++.|+|.|+.++++|++|+
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~   92 (118)
T 1elw_A           40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------------GKGYSRKAAALEFLNRFEEAK   92 (118)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            45567888899999999999999999865432               467899999999999999886

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.032  Score=44.08  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=46.4

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...+...|.-+++.++|.+|+..|.+++...+..               ..++.|+|.|+.++++|++|+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---------------VKALYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            4556677888999999999999999999864432               467889999999999999886

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.36  E-value=0.036  Score=42.47  Aligned_cols=60  Identities=13%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-++..|+|.+|+..|.+++...+.....        ......++.|+|.|+.++++|++|+
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~   99 (131)
T 1elr_A           40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAI   99 (131)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------HHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34567888999999999999999999976542211        1233678899999999999999986

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.35  E-value=0.027  Score=51.75  Aligned_cols=60  Identities=12%  Similarity=0.097  Sum_probs=39.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+.+ |+|.+|+..|++|+.+.+....         ......+++|++.+|.++++|++|+
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~  175 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAA  175 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4455566666666 8888888888888876643210         1223566777777777777777775

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.34  E-value=0.029  Score=47.54  Aligned_cols=55  Identities=11%  Similarity=0.049  Sum_probs=46.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|.+|+..|.+|+.+.+..               ..++.|+|.||.++++|++|+
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~  142 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAK  142 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcccHHHHH
Confidence            4566778999999999999999999999874332               467899999999999999886

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.32  E-value=0.029  Score=51.10  Aligned_cols=63  Identities=17%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.+..+...|+.+...|+|.+|+..|.+|+.+.....  +       .......|.|++.||.++++|++|+
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--N-------EDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--C-------HHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            4455566678888889999999999999998764321  1       1123678899999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.31  E-value=0.035  Score=55.02  Aligned_cols=69  Identities=10%  Similarity=-0.020  Sum_probs=55.4

Q ss_pred             hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.+..+....+.+..+-.+|+|.+|+..|++||......-..+..       .....++|||.+|..+++|++|+
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp-------~~a~~~~nLa~~y~~~g~~~eA~  371 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL-------YVLRLLSIASEVLSYLQAYEEAS  371 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH-------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHHhcCHHHHH
Confidence            4456677777788888889999999999999999987653332221       24788999999999999999986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.04  Score=41.25  Aligned_cols=61  Identities=13%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      .-+...|.-+++.|+|.+|+..|++|+.+.+...   +      ......++.+++.|+..++++..|++
T Consensus        39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~------~~~~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE---H------VAIRSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT---S------HHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc---H------HHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence            3456789999999999999999999998654421   0      22346778999999999999988763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.24  E-value=0.026  Score=48.93  Aligned_cols=54  Identities=20%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|..+++.|+|.+|+..|++|+..-+..               ...+.|+|.|+++++++++|+
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~   59 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD---------------PEALYWLARTQLKLGLVNPAL   59 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            345678999999999999999999999865442               467899999999999999886

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.18  E-value=0.027  Score=55.00  Aligned_cols=64  Identities=14%  Similarity=0.013  Sum_probs=51.1

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|..+...|+|.+|+..|++||.+.+...+.+..+       ....++|||..|..+++|++|+
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-------~a~~l~nLa~~~~~qg~~~eA~  402 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-------VASMWLKLGRLYMGLENKAAGE  402 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-------HHHHHHHHHHHHHhccCHHHHH
Confidence            455666788899999999999999999999886532222222       3678899999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.17  E-value=0.043  Score=41.88  Aligned_cols=53  Identities=11%  Similarity=-0.043  Sum_probs=41.6

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-++..|+|.+|+..|.+++...+..               ..++.++|.|+.++++|++|+
T Consensus        48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~  100 (131)
T 2vyi_A           48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---------------SKAYGRMGLALSSLNKHVEAV  100 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---------------HHHHHHHHHHHHHhCCHHHHH
Confidence            34567888889999999999999999864332               356788888888888888875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.17  E-value=0.039  Score=44.48  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=41.4

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-+++.|+|.+|+..|.+|+...+..               ..++.|+|.|+.++++|++|+
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~  101 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAAL  101 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHH
Confidence            34566788888999999999999999864432               356788888888888888875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.13  E-value=0.04  Score=50.14  Aligned_cols=61  Identities=25%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             HHhHHHHhhhHHhc-ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+.+. |+|.+|+..|++|+.+.+....         ......+++|++.+++++++|++|+
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45667788888886 9999999999999998754221         1223568999999999999999987

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.97  E-value=0.05  Score=46.98  Aligned_cols=62  Identities=6%  Similarity=0.009  Sum_probs=47.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|.+|+..|++|+...+..        ..+......+|.|++.|+.++++|++|+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN--------ATIEKLYAIYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence            3445667888888888888888888888765432        1234445678999999999999999986

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=94.90  E-value=0.052  Score=51.08  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|.-++..|+|.+|+..|.+|+.+.+....         ......++.|++.||.++++|++|+
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            34556677889999999999999999999988754321         2234566777777777777777765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=94.84  E-value=0.046  Score=47.48  Aligned_cols=54  Identities=2%  Similarity=-0.079  Sum_probs=44.9

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|..+++.|+|..|+..|+++++..+...            .....+.+++.|+.+++++++|+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~l~~~~~~~g~~~~A~  204 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ------------ATRDALPLMENAYRQMQMNAQAE  204 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC------------ccHHHHHHHHHHHHHcCCcHHHH
Confidence            4678899999999999999999998765421            12356789999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=94.84  E-value=0.044  Score=52.11  Aligned_cols=54  Identities=15%  Similarity=0.096  Sum_probs=45.1

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.++|++|+..|++|+.+-+..               ..++.|+|.||+++++|++|+
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~  327 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQAL  327 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHccCHHHHH
Confidence            334567888999999999999999999854321               567899999999999999986

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.84  E-value=0.039  Score=50.10  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      ..+...|.-+++.|+|.+|+..|.+|+.+......         ......+|.|++.||.+++++++|
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------MALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---------CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHcCCcHHH
Confidence            45667899999999999999999999987643111         113467899999999999999998

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.78  E-value=0.049  Score=51.30  Aligned_cols=63  Identities=13%  Similarity=-0.050  Sum_probs=48.1

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|.-++..|+|.+|+..|.+|+.+......         ......++.|+|.||.++++|++|+
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~  242 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAV  242 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            45666678899999999999999999999998754211         2244667788888888888887775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.74  E-value=0.033  Score=47.89  Aligned_cols=66  Identities=8%  Similarity=0.016  Sum_probs=47.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHH-----HHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQ-----KLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~-----~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|..+++.|+|..|+..|++|+..-+...    +-.     .........++.|+|.||.++++|++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            45667889999999999999999999998643210    000     0001123344566999999999999986

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.72  E-value=0.048  Score=46.33  Aligned_cols=69  Identities=16%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHH-HHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~-~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|+|.+|+..|++|+...+......-... .........++.|+|.|+.++++|++|+
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            34567899999999999999999999997654220000000 0000012477899999999999999986

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=94.69  E-value=0.08  Score=44.25  Aligned_cols=62  Identities=10%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|.-++..|+|.+|+..|.+|+.+......         ......++.|++.++..+++|++|+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~   86 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAAR   86 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4566778899999999999999999999998765321         2335678999999999999999886

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.062  Score=46.62  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=37.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|.+|+..|++++...+..               ..++.|+|.|++++++|++|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~  193 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAI  193 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHH
Confidence            3445677888899999999999999998865432               244555555555555555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.68  E-value=0.072  Score=40.17  Aligned_cols=53  Identities=26%  Similarity=0.420  Sum_probs=43.4

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-+++.|+|.+|+..|.+++...+..               ...+.|+|.++.++++|++|+
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~   97 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAI   97 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHH
Confidence            34567888899999999999999999864322               356789999999999999886

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=94.60  E-value=0.078  Score=48.54  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=42.8

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.+...|+|.+|+..|.+|+.+......         ......+|.|++.||.++++|++|+
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~   96 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS---------LFHAAKAFEQAGMMLKDLQRMPEAV   96 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            3344455577788888999999999998887643211         1123567778888888888887775

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=94.57  E-value=0.08  Score=47.57  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=25.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..++..|+|.+|+..|++|+...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~   35 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG   35 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Confidence            4456677888999999999999999998863

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.53  E-value=0.059  Score=46.61  Aligned_cols=51  Identities=12%  Similarity=0.048  Sum_probs=31.7

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...|.-++..|+|++|+..|++|+..- . .              ..++.|++.|+.++++|++|+
T Consensus       121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~--------------~~~~~~la~~~~~~g~~~~A~  171 (217)
T 2pl2_A          121 HLQRGLVYALLGERDKAEASLKQALALE-D-T--------------PEIRSALAELYLSMGRLDEAL  171 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-C--------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcc-c-c--------------hHHHHHHHHHHHHcCCHHHHH
Confidence            3456777778888888888888887754 1 1              234455555555555555543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=94.52  E-value=0.039  Score=40.53  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             cccCch-hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHH
Q 016518          307 WEMNNQ-GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAA  375 (388)
Q Consensus       307 ~~l~~~-e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~  375 (388)
                      ..|++. ..+..|..+-.+|.++=+.|+|++|+.+|..|+.+|.... ...++..++.-..++.=|+++|.
T Consensus         7 ~~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE   77 (83)
T 2w2u_A            7 HHMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE   77 (83)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            356664 4568999999999999999999999999999999984310 01122233344455666666664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.50  E-value=0.047  Score=52.67  Aligned_cols=64  Identities=16%  Similarity=0.109  Sum_probs=47.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|.-++..|+|++|+..|++|+.++.......      ...-....|.|+|.+|..+++|++|+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~  114 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQ  114 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHH
Confidence            33455678999999999999999999999864311100      00112567999999999999999986

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=94.47  E-value=0.075  Score=50.08  Aligned_cols=34  Identities=15%  Similarity=0.066  Sum_probs=29.9

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ...+..+...|..++..|+|.+|+..|++|+...
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~   78 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG   78 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            4567777889999999999999999999999863

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=94.45  E-value=0.094  Score=49.30  Aligned_cols=64  Identities=16%  Similarity=0.062  Sum_probs=49.7

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|.-++..|+|..|+..|.+|+.+.+.....        ......+++|++.||..+++|++|+
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~  204 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAI  204 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            456667777888888888888888888888877654211        2234689999999999999999986

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.40  E-value=0.057  Score=47.42  Aligned_cols=64  Identities=16%  Similarity=-0.003  Sum_probs=50.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.++..|+|.+|+..|.+|+.........+       ......++.|+|.|+..+++|++|+
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~  105 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAE  105 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHH
Confidence            455667889999999999999999999998763321111       1234678999999999999999986

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=94.40  E-value=0.043  Score=57.10  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+...|+-+++.|+|++|+..|++|+++-
T Consensus        45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~   73 (723)
T 4gyw_A           45 AHSNLASVLQQQGKLQEALMHYKEAIRIS   73 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34456666777777777777777777643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.38  E-value=0.056  Score=47.47  Aligned_cols=63  Identities=22%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-++..|+|.+|+..|++|+..+......+       ......++.|+|.|+.++++|++|+
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-------DPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44556788899999999999999999999864321111       1224678999999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.36  E-value=0.056  Score=53.56  Aligned_cols=64  Identities=8%  Similarity=-0.115  Sum_probs=50.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|..+...|+|.+|+..|++||.+.....+.+..       .....++|||..|..+++|++|+
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-------~~a~~l~nLa~~~~~~G~~~eA~  413 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-------QLGMAVMRAGLTNWHAGHIEVGH  413 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHCCCHHHHH
Confidence            45566677888899999999999999999987642222211       23688899999999999999986

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.36  E-value=0.089  Score=51.22  Aligned_cols=69  Identities=12%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.+..+...-+.+...-+.|+|.+|+..|++||...+..-..+..       .....++|||.+|..+++|++|+
T Consensus       292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-------~~a~~~~nLa~~y~~~g~~~eA~  360 (433)
T 3qww_A          292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV-------YMLHMMYQAMGVCLYMQDWEGAL  360 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH-------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch-------HHHHHHHHHHHHHHhhcCHHHHH
Confidence            3344555566666666667899999999999999987653322211       24688899999999999999986

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.34  E-value=0.033  Score=46.32  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=45.4

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+-..|..+++.|+|.+|+..|++++..-+..               ...+.|+|.+++++++|++|+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~   60 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR---------------GDVKLAKADCLLETKQFELAQ   60 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            45567889999999999999999999865442               577899999999999999986

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.34  E-value=0.067  Score=48.49  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC-chhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~-~~~ai  387 (388)
                      ..+.-+-..|+-+++.|+|.+|+..|.+|+.+.......         .....+|.|++.||.++++ |++|+
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~~A~  257 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM---------ALIGQLYYQRGECLRKLEYEEAEIE  257 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC---------TTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH---------HHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            445567788999999999999999999999977542211         1247899999999999995 58876

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=94.26  E-value=0.13  Score=40.33  Aligned_cols=72  Identities=18%  Similarity=0.105  Sum_probs=51.9

Q ss_pred             ccccCch-hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CC-ChHHHHHHHHHHHHhhhHHHHHH
Q 016518          306 PWEMNNQ-GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SF-VDDEQKLVKSLRVSCWLNSAACC  377 (388)
Q Consensus       306 ~~~l~~~-e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~-~~~~~~~~~~~~~~~~~NlA~c~  377 (388)
                      ..+|+.. +.+..|..+-.+|.++=+.++|++|+.+|..|+.+|.... .. .+......-.-++.-|+++|.-.
T Consensus         5 ~~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~L   79 (117)
T 2cpt_A            5 SSGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKL   79 (117)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3567666 7889999999999999999999999999999999885411 11 22333444455666677776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.25  E-value=0.1  Score=49.00  Aligned_cols=64  Identities=11%  Similarity=0.019  Sum_probs=44.7

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|.-++..|+|..|+..|.+|+.+.+.....        ......+++|+|.||..+++|++|+
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~  202 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKAL  202 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            345555566667777777777777777777666542211        1235789999999999999999986

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.12  Score=44.70  Aligned_cols=32  Identities=34%  Similarity=0.542  Sum_probs=25.9

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+..+...|+.+++.|+|.+|+..|.+++...
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~   35 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH   35 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            56777888888888888888888888888754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.19  E-value=0.09  Score=46.18  Aligned_cols=31  Identities=23%  Similarity=0.094  Sum_probs=21.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..++..|+|.+|+..|++|+...
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIR   73 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC
Confidence            4445566777777777777777777777754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=94.14  E-value=0.082  Score=46.53  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...|.-+++.|+|.+|+..|.+|+...+..               ..++.|+|.||.++++|++|+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---------------LDMYGQIGSYFYNKGNFPLAI  128 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHccCHHHHH
Confidence            4567777888888888888888888754432               357788999999999988886

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.02  E-value=0.067  Score=52.04  Aligned_cols=64  Identities=8%  Similarity=-0.195  Sum_probs=50.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|..+...|+|.+|+..|+++|...+...+....       .....++|||..|..+++|++|+
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-------~~a~~l~nLa~~~~~~g~~~eA~  391 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-------VRGVQVMKVGKLQLHQGMFPQAM  391 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-------HHHHHHHHHHHHHHhcCCHHHHH
Confidence            45566677888899999999999999999987642222211       24688899999999999999986

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.01  E-value=0.09  Score=46.20  Aligned_cols=54  Identities=11%  Similarity=0.008  Sum_probs=45.4

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|+|.+|+..|.+|+...+..               ..++.|+|.|+.++++|++|+
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~  131 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRDKLAQ  131 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---------------cHHHHHHHHHHHHhccHHHHH
Confidence            345667889999999999999999999865432               367889999999999999886

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=93.98  E-value=0.12  Score=43.10  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|.-++..|+|.+|+..|.+|+.+......         ......++.|++.|+.++++|++|+
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~  167 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD---------QVAIACAFRGLGDLAQQEKNLLEAQ  167 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            3445667788999999999999999999987654221         2334677899999999999999886

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=93.93  E-value=0.15  Score=46.49  Aligned_cols=59  Identities=17%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .......|+.+++.|+|.+|+..|++++...+..           ......++.++|.|+.++++|++|+
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSV-----------AEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHHHHHHccCHHHHH
Confidence            3344556888899999999999999998865432           1223344555666666666665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.92  E-value=0.081  Score=47.92  Aligned_cols=32  Identities=38%  Similarity=0.461  Sum_probs=27.1

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      +..++..|+.+|+.|+|.+|+..|++|+...+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p   35 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP   35 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45678889999999999999999999998654

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.096  Score=38.57  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             cCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHH
Q 016518          309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAA  375 (388)
Q Consensus       309 l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~  375 (388)
                      |+..+.+..|..+-.+|.+.=+.|+|++|+.+|..|+.+|-.. ...+++..+..-.-++.=|+++|-
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE   71 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAE   71 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            5556678888899999999999999999999999999987431 111223333444445555666654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=93.76  E-value=0.12  Score=48.13  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=24.7

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      +..+...|..+++.|+|.+|+..|++|+...
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~   39 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG   39 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            4455667888889999999999999988863

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.74  E-value=0.082  Score=52.06  Aligned_cols=55  Identities=25%  Similarity=0.263  Sum_probs=27.9

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      .+..+...|+.+++.|+|++|+..|++|+..-+..               ..++.|+|.||+++++|++|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A   59 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYA   59 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHH
Confidence            34444455555555555555555555555542221               34455555555555555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.73  E-value=0.11  Score=49.63  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .+..+...|+.+++.|+|.+|+..|++++...
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~   56 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD   56 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45667778888999999999999999988754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.69  E-value=0.14  Score=42.08  Aligned_cols=31  Identities=13%  Similarity=0.109  Sum_probs=24.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      ..+...|.-++..|+|..|+..|.+|+...+
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   75 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRG   75 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            3456678888888888888888888887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.60  E-value=0.14  Score=43.12  Aligned_cols=20  Identities=5%  Similarity=-0.378  Sum_probs=13.3

Q ss_pred             HhhhHHHHHHHHc-cCchhhh
Q 016518          368 SCWLNSAACCLKL-KDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl-~~~~~ai  387 (388)
                      .++.++|.|+.++ ++|++|+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~   97 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESM   97 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHH
Confidence            4556677777777 7776664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.58  E-value=0.12  Score=46.86  Aligned_cols=55  Identities=13%  Similarity=0.048  Sum_probs=47.2

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...+...|..++..|++..|+..|++|+..-+..               ...+.|+|.++++++++++|+
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~  171 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------------GEIGLLLAETLIALNRSEDAE  171 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------------hhHHHHHHHHHHHCCCHHHHH
Confidence            3456788999999999999999999999865543               467899999999999999986

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=93.51  E-value=0.11  Score=39.45  Aligned_cols=51  Identities=27%  Similarity=0.449  Sum_probs=34.0

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-++..|++.+|+..|.+++...+..               ..++.++|.|+.++++|++|+
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~   89 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAI   89 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHH
Confidence            344555666666777777666666543221               346778899999999888875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=93.47  E-value=0.079  Score=49.13  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=15.0

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..++.|++.||.++++|++|+
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~  153 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDAC  153 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHH
Confidence            356677777777777777765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.44  E-value=0.18  Score=49.04  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=50.6

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...+..+...-.++.++|+|.+|+..|++++......-..+.       -.....++|+|..|..+++|++|+
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h-------~~~~~~~~~L~~~y~~~g~~~eA~  349 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN-------IYQLKVLDCAMDACINLGLLEEAL  349 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS-------HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc-------hHHHHHHHHHHHHHHhhccHHHHH
Confidence            344556666667788999999999999999987654322221       135788999999999999999986

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=93.36  E-value=0.095  Score=46.83  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=51.7

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|..++..|+|.+|+..|++|+.+........       ......++.++|.|+..+++|++|+
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~   89 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-------HPDVATMLNILALVYRDQNKYKDAA   89 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-------SHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            4566777899999999999999999999999764321101       1234688999999999999999986

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=93.29  E-value=0.14  Score=45.61  Aligned_cols=63  Identities=21%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|.+|+..|.+|+.........+       ......++.++|.|++++++|++|+
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~  215 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAE  215 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44456678899999999999999999999865432111       1223678899999999999999986

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=93.22  E-value=0.19  Score=37.71  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHHHH
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAACC  377 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~c~  377 (388)
                      -...+..|..+-..|.++=+.|+|++|+.+|..|+.+|... ....+...+..-.-++.=|+++|.-.
T Consensus         8 ~~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~L   75 (93)
T 1wfd_A            8 QDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899999999999999999999999998541 11223344445555666677776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=93.13  E-value=0.14  Score=47.34  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=16.2

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..++.|++.||.++++|.+|+
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHH
Confidence            456778888888888888775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=93.12  E-value=0.17  Score=38.36  Aligned_cols=52  Identities=27%  Similarity=0.418  Sum_probs=42.0

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....|.-+++.|+|.+|+..|.+++...+..               ..++.++|.++.+++++++|+
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~  123 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAI  123 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHccHHHHH
Confidence            4456777889999999999999999864332               356788999999999999886

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.11  E-value=0.18  Score=40.81  Aligned_cols=51  Identities=12%  Similarity=0.026  Sum_probs=33.9

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+++.|+|.+|+..|.+++...+..               ..++.++|.|+.+++++++|+
T Consensus       114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A          114 FRLGVALDNLGRFDEAIDSFKIALGLRPNE---------------GKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHcCCHHHHH
Confidence            344555666666666666666666543221               356788888888888888875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.11  E-value=0.18  Score=47.96  Aligned_cols=57  Identities=18%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      ......|+.+++.|+|.+|+..|++++...+..           ......++.|++.|+.+++++++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~~~~~~~~l~~~~~~~g~~~~A  314 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVRSKERICHCFSKDEKPVEA  314 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHHHHHHCCCHHHH
Confidence            334555999999999999999999999864431           112233444555555555555444

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=92.93  E-value=0.2  Score=36.97  Aligned_cols=60  Identities=17%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHH
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAA  375 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~  375 (388)
                      ..|..+-.++-++=+.|+|++|+.+|..|+.+|-.. ....+...++.-.-++.-|+++|-
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE   74 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAE   74 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence            356666677888889999999999999999988531 112233334444456777777764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=92.83  E-value=0.03  Score=43.15  Aligned_cols=46  Identities=20%  Similarity=0.185  Sum_probs=32.8

Q ss_pred             hcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       330 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|+|.+|+..|++|+..-.     ++       .....++.|++.|+.++++|++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~-----~~-------p~~~~~~~~lg~~~~~~~~~~~A~   47 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGL-----QG-------KDLAECYLGLGSTFRTLGEYRKAE   47 (117)
T ss_dssp             -----CCCHHHHHHHHSSCC-----CH-------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCC-----CC-------ccHHHHHHHHHHHHHHcCCHHHHH
Confidence            35889999999999998421     01       123678899999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=92.82  E-value=0.2  Score=40.58  Aligned_cols=20  Identities=5%  Similarity=0.011  Sum_probs=13.1

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .++.++|.++.++++|++|+
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAI  130 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHH
Confidence            45566777777777776664

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=92.80  E-value=0.16  Score=48.55  Aligned_cols=21  Identities=14%  Similarity=0.109  Sum_probs=15.3

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+|.|++.|+.++++|.+|+
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHHHHHHHHHHccCHHHHH
Confidence            356777777777777777775

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.77  E-value=0.11  Score=50.94  Aligned_cols=55  Identities=22%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             HHhHHHHhhhHHhcccH-HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKY-ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~-~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|..++..|+| .+|+..|++|+..-+..               ..++.|+|.||+++++|++|+
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            45567889999999999 99999999999864432               467899999999999999986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=92.66  E-value=0.18  Score=48.09  Aligned_cols=66  Identities=9%  Similarity=-0.001  Sum_probs=37.5

Q ss_pred             HHHHhhhHHhccc-HHHHHHHHHHHHhhhcCCC--------------CCChHHHHHHH------HHHHHhhhHHHHHHHH
Q 016518          321 KKEEGNLLFKNGK-YERAGKKYNKAADCVSEDG--------------SFVDDEQKLVK------SLRVSCWLNSAACCLK  379 (388)
Q Consensus       321 ~k~~Gn~~fk~~~-~~~A~~~Y~kal~~l~~~~--------------~~~~~~~~~~~------~~~~~~~~NlA~c~lK  379 (388)
                      +...|+-+++.|+ |.+|+..|.+|+.+-+...              ...+ ....++      .-...+|.|++.|+.+
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~e-Al~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ-ELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            3455666666675 7777777777776432210              0111 111111      1124567888888888


Q ss_pred             ccCchhhh
Q 016518          380 LKDYQGIR  387 (388)
Q Consensus       380 l~~~~~ai  387 (388)
                      +++|++|+
T Consensus       213 ~g~~~eAl  220 (382)
T 2h6f_A          213 FKLWDNEL  220 (382)
T ss_dssp             HTCCTTHH
T ss_pred             cCChHHHH
Confidence            88888876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=92.57  E-value=0.17  Score=47.32  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=24.9

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ..+...|+.+++.|+|.+|+..|++|+..-
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   97 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            346677888999999999999999999854

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.56  E-value=0.12  Score=47.57  Aligned_cols=20  Identities=5%  Similarity=-0.129  Sum_probs=12.7

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .++.+++.|+.+++++++|+
T Consensus       133 ~~~~~l~~~~~~~g~~~~A~  152 (368)
T 1fch_A          133 TALMALAVSFTNESLQRQAC  152 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            45566666666666666664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=92.47  E-value=0.23  Score=43.59  Aligned_cols=53  Identities=9%  Similarity=-0.009  Sum_probs=31.9

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|.-++..|+|.+|+..|.+++. .....           .....++.+++.|+.++++|++|+
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----------~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFS-KVNAT-----------KAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------TCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------hHHHHHHHHHHHHHHHcccHHHHH
Confidence            345555555666666666666555 22111           112445788888888888888876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=92.47  E-value=0.14  Score=44.50  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=19.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      +..+...|..++..|+|.+|+..|.+++..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI   66 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            455556666667777777777777776664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.46  E-value=0.26  Score=43.40  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=48.7

Q ss_pred             hHHHHhhhHHh--------cccHHHHHHHHHHHHhhhcCCCCCCh--HHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFK--------NGKYERAGKKYNKAADCVSEDGSFVD--DEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk--------~~~~~~A~~~Y~kal~~l~~~~~~~~--~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+-..|.-+++        .|+|.+|+..|++++...+.......  .....+.......+.++|.||.++++|++|+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            35567888899        99999999999999987654321111  1112233334445689999999999999987

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.46  E-value=0.16  Score=45.69  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-+++.|+|.+|+..|++++...+..               ..++.|+|.|+.+++++.+|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~  290 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQN---------------ASTYSAIGYIHSLMGNFENAV  290 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------SHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---------------hHHHHHHHHHHHHhccHHHHH
Confidence            44567888999999999999999999865432               467899999999999999986

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.43  E-value=0.095  Score=43.50  Aligned_cols=55  Identities=11%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             HHhHHHHhhhHHhcccH----------HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc------
Q 016518          318 AGRKKEEGNLLFKNGKY----------ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK------  381 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~----------~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~------  381 (388)
                      +..+...|+.+...++|          ++|+..|++||++-+..               ...|.|++.+|.+++      
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---------------~~A~~~LG~ay~~lg~l~P~~  100 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------------DEAVWCIGNAYTSFAFLTPDE  100 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHhcccCcch
Confidence            44455677777777665          59999999999865442               577899999999985      


Q ss_pred             -----Cchhhh
Q 016518          382 -----DYQGIR  387 (388)
Q Consensus       382 -----~~~~ai  387 (388)
                           +|++|+
T Consensus       101 ~~a~g~~~eA~  111 (158)
T 1zu2_A          101 TEAKHNFDLAT  111 (158)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhhccHHHHH
Confidence                 787776

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.42  E-value=0.23  Score=42.49  Aligned_cols=20  Identities=10%  Similarity=0.002  Sum_probs=13.9

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .++.++|.|++++++|++|+
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~  145 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLAL  145 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHH
Confidence            35667777777777777765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=92.35  E-value=0.24  Score=42.95  Aligned_cols=20  Identities=15%  Similarity=0.190  Sum_probs=12.6

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.++|.++++++++++|+
T Consensus       142 ~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          142 RVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            45566666666666666654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=92.33  E-value=0.25  Score=41.55  Aligned_cols=51  Identities=10%  Similarity=0.042  Sum_probs=32.1

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+++.|++.+|+..|.+++...+..               ..++.++|.|++++++|++|+
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQF---------------PPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------chHHHHHHHHHHHcCCHHHHH
Confidence            344555666666666666666666543221               345677888888888887775

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.28  E-value=0.22  Score=45.84  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=22.5

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      ..+...|.-+++.|+|.+|+..|++++...
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            334556777888888888888888888754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=92.26  E-value=0.23  Score=40.79  Aligned_cols=53  Identities=9%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             hHHHHhhh-HHhcccH--HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNL-LFKNGKY--ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~-~fk~~~~--~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -+...|.- +++.|+|  .+|+..|.+++...+..               ..++.|+|.|++++++|++|+
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~  135 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---------------ITALMLLASDAFMQANYAQAI  135 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcccHHHHH
Confidence            34556777 6789999  99999999999865432               367889999999999999986

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.20  E-value=0.26  Score=42.14  Aligned_cols=21  Identities=5%  Similarity=-0.020  Sum_probs=17.6

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..++.++|.+++++++|++|+
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHH
Confidence            456788999999999998886

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=92.20  E-value=0.18  Score=50.38  Aligned_cols=28  Identities=4%  Similarity=-0.133  Sum_probs=17.4

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      .+...|..+++.|+|++|+..|++|+..
T Consensus        25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~   52 (568)
T 2vsy_A           25 AWLMLADAELGMGDTTAGEMAVQRGLAL   52 (568)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445566666666666666666666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.14  E-value=0.3  Score=44.34  Aligned_cols=32  Identities=16%  Similarity=0.144  Sum_probs=24.2

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      +......|..++..|+|..|+..|.+++...+
T Consensus       120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A          120 MQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            33445567888888999999999988887644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.01  E-value=0.19  Score=51.74  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=15.4

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~  347 (388)
                      ..+...|..+++.|+|++|+..|++|+..
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~  462 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAER  462 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence            34444555555555555555555555553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=91.94  E-value=0.32  Score=45.18  Aligned_cols=63  Identities=13%  Similarity=0.023  Sum_probs=50.9

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+...|..++..|+|..|+..|.+|+.+......         ......++.|+|.|+..+++|++|+
T Consensus        45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~  107 (406)
T 3sf4_A           45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------QLGEAKASGNLGNTLKVLGNFDEAI  107 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34566778899999999999999999999987654321         2334678899999999999999886

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=91.89  E-value=0.38  Score=34.12  Aligned_cols=47  Identities=23%  Similarity=0.243  Sum_probs=37.4

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK  381 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~  381 (388)
                      .+...|.-+++.|+|.+|+..|++|+..-+..               ...+.|++.++.+++
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhcC
Confidence            34567889999999999999999999864332               356788999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=91.79  E-value=0.28  Score=45.99  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=50.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.-+...|.-++..|+|.+|+..|++|+.+......         ......++.+++.||..+++|++|+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~  146 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---------RLGEAKSSGNLGNTLKVMGRFDEAA  146 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---------chHHHHHHHHHHHHHHHCCCHHHHH
Confidence            4456678899999999999999999999997654321         2345678999999999999999886

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.69  E-value=0.11  Score=49.35  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=45.3

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh--HHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD--DEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~--~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++|..+++.|+|++|+..|.++++..+.......  ............++.|++..|.++++|++|+
T Consensus         9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~   75 (434)
T 4b4t_Q            9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLR   75 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence            4677788999999999999999987654221110  0001112233456789999999999999986

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=91.67  E-value=0.3  Score=43.63  Aligned_cols=63  Identities=13%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+.-+...|.-++..|+|..|+..|.+|+.+......         ......++.++|.++..+++|++|+
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~  103 (338)
T 3ro2_A           41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------QLGEAKASGNLGNTLKVLGNFDEAI  103 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc---------cHHHHHHHHHHHHHHHHccCHHHHH
Confidence            34566778899999999999999999999987643210         2334678899999999999999886

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=91.65  E-value=0.17  Score=45.49  Aligned_cols=20  Identities=5%  Similarity=-0.105  Sum_probs=14.5

Q ss_pred             HhhhHHHHHHHHccCchhhh
Q 016518          368 SCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       368 ~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .++.++|.|+.++++|++|+
T Consensus        90 ~~~~~la~~~~~~~~~~~A~  109 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAAL  109 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            45677777777777777765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=91.64  E-value=0.25  Score=49.29  Aligned_cols=53  Identities=11%  Similarity=0.040  Sum_probs=33.5

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|.-+++.|+|++|+..|++|+..-+..               ..++.|+|.||.++++|++|+
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~  111 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---------------PGIALWLGHALEDAGQAEAAA  111 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            34556777788888888888888888754321               234555555555555555553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.45  E-value=0.29  Score=44.46  Aligned_cols=42  Identities=19%  Similarity=0.209  Sum_probs=26.6

Q ss_pred             cccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       331 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .|+|++|+..|++++...+..               ..+++|+|.|++++++|++|+
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            355666666666665543221               356778888888888887775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=91.44  E-value=0.32  Score=43.59  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=16.2

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..++.|+|.|++++++|++|+
T Consensus       240 ~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          240 VRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHH
Confidence            356778888888888888775

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.37  E-value=0.34  Score=43.55  Aligned_cols=63  Identities=25%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|+|.+|+..|++++...+........      .....++.|+|.|+.++++|++|+
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV------DKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT------TTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc------cHHHHHHHHHHHHHHHhcCHHHHH
Confidence            334567788888888888888888888876432111000      011468899999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=91.11  E-value=0.23  Score=48.56  Aligned_cols=55  Identities=18%  Similarity=0.033  Sum_probs=42.6

Q ss_pred             HHHHhhhHHhc--------ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKN--------GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~--------~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...|+-++..        |+|++|+..|++|+.+-+..            ......+.|+|.||.++++|++|+
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~lg~~~~~~g~~~~A~  278 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA------------SSNPDLHLNRATLHKYEESYGEAL  278 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG------------GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc------------ccCHHHHHHHHHHHHHcCCHHHHH
Confidence            45567777777        99999999999999874410            011577889999999999998886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=91.09  E-value=0.23  Score=51.17  Aligned_cols=52  Identities=15%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+...|+.+++.|+|++|+..|++|+++-+..               ...++|+|.|+.++++|++ +
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~~~~~g~~~~-~  520 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---------------LAPKLALAATAELAGNTDE-H  520 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------SHHHHHHHHHHHHHTCCCT-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCChHH-H
Confidence            34567888999999999999999999876543               4778899999999999987 5

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.01  E-value=0.35  Score=50.26  Aligned_cols=53  Identities=25%  Similarity=0.419  Sum_probs=47.5

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -+-.++..+-++|+|+.|+..=++|+.+.+..               -.++.+||.||+++++|+.|+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHH
Confidence            46667888899999999999999999988775               488999999999999999986

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=89.70  E-value=0.45  Score=44.37  Aligned_cols=21  Identities=14%  Similarity=-0.012  Sum_probs=16.8

Q ss_pred             HHhhhHHHHHHHHccCchhhh
Q 016518          367 VSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       367 ~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...+.|++.++.+++++++|+
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          339 AAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHH
Confidence            356788888888888888875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=89.23  E-value=0.53  Score=45.33  Aligned_cols=54  Identities=11%  Similarity=0.023  Sum_probs=46.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|+|.+|+..|++++..-+..               ..++.++|.|+.++++|++|+
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~   93 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPDY---------------SKVLLRRASANEGLGKFADAM   93 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH---------------HHHHHHHHHHHHHHhhHHHHH
Confidence            346677899999999999999999999864432               467899999999999999986

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=89.05  E-value=0.58  Score=34.53  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      -+..|...-.+++.+.+.|+|.+||.++.+|..||..
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3556788888899999999999999999999999964

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=88.87  E-value=0.1  Score=50.88  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=23.6

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....|+.+|..|+|+.|...|.++                       .-|.++|.|+.++++|++|+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHH
Confidence            6677899999999999999999976                       23466667777777666665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=88.64  E-value=0.69  Score=38.00  Aligned_cols=56  Identities=13%  Similarity=-0.137  Sum_probs=44.1

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+-..|.-+++.|+|++|+..|.++++.-+...   +          ...+.|++.++..++++++|+
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~----------~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQ---D----------GEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT---T----------THHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC---h----------HHHHHHHHHHHHHhCCCCcHH
Confidence            4456678899999999999999999998543211   0          246789999999999998875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=88.53  E-value=0.58  Score=45.46  Aligned_cols=54  Identities=13%  Similarity=0.086  Sum_probs=46.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+...|.-+++.|+|.+|+..|++++..-+..               ...+.++|.|+.++++|++|+
T Consensus        60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~  113 (537)
T 3fp2_A           60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDH---------------SKALLRRASANESLGNFTDAM  113 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            456678999999999999999999999864332               467899999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.24  E-value=1.2  Score=42.04  Aligned_cols=61  Identities=13%  Similarity=0.096  Sum_probs=49.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-....|+-++..|+|.+|+..|++++..+.....         +...+.+++|++.+|+.+++|.+|+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~  195 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSK  195 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHH
Confidence            445567799999999999999999999988755321         1235688999999999999999885

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=86.58  E-value=1.3  Score=40.09  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI  386 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a  386 (388)
                      +-..|.-+.+.|+|.+|...|++|+..-+..               ...+.|++.++..++++.++
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---------------~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGH---------------PETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCCHHH
Confidence            4567888999999999999999999865432               35689999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=86.26  E-value=1.1  Score=44.31  Aligned_cols=55  Identities=18%  Similarity=-0.005  Sum_probs=46.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|++++|+..|++++..-+..               ...|.+++.||.++++|++|+
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~  570 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---------------ANVHTAIALVYLHKKIPGLAI  570 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhCCHHHHH
Confidence            3445667888999999999999999999864332               478899999999999999986

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=84.85  E-value=1.6  Score=40.27  Aligned_cols=62  Identities=8%  Similarity=0.008  Sum_probs=46.6

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|..++..|+|..|...|.+|+...+....         ......+++|++.+++.+++|.+|+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~  113 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAW  113 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3445566788888889999999999999987654221         1234567899999999999999886

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=84.58  E-value=3.2  Score=38.25  Aligned_cols=60  Identities=17%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl  380 (388)
                      .-..|-++|+.|+|++|+..++..|..+......+++|.++++++...|..=+-++.+.+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl  164 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMET  164 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346699999999999999999999999887666677888888888777766555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.58  E-value=2.1  Score=31.58  Aligned_cols=33  Identities=12%  Similarity=0.000  Sum_probs=27.5

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      +..+.-.|+.+|+.|+|++|+..|++++...+.
T Consensus        43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344566799999999999999999999986544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.57  E-value=0.8  Score=50.76  Aligned_cols=15  Identities=33%  Similarity=0.403  Sum_probs=6.8

Q ss_pred             CCeEEEccCCcccch
Q 016518          235 QPLEFITDEEQVIAG  249 (388)
Q Consensus       235 ~p~~f~lG~~~v~~g  249 (388)
                      +.+.+.+.+..++|-
T Consensus       323 ~vl~v~v~~~~iv~y  337 (1630)
T 1xi4_A          323 QVLSVCVEEENIIPY  337 (1630)
T ss_pred             eEEEEEEccchhhhh
Confidence            334444544444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=84.04  E-value=2.9  Score=38.51  Aligned_cols=61  Identities=8%  Similarity=-0.071  Sum_probs=48.0

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+.-.-..|.-++..|++..|+..+.+|+...+..   +       ...+..+++|++.++..+++|++|+
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~-------~~~~~~~~~~l~~~~~~~g~~~~A~   73 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---W-------FYSRIVATSVLGEVLHCKGELTRSL   73 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---C-------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---c-------hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence            34555667888899999999999999999876321   1       1235678899999999999999875

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=83.54  E-value=2.8  Score=38.64  Aligned_cols=60  Identities=18%  Similarity=0.078  Sum_probs=46.7

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl  380 (388)
                      .-+.|-++|+.|+|++|+..++..|..+......+++|.++++++...|..=+-++.+.+
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl  176 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIEL  176 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444799999999999999999999998877655667777788777777665555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.46  E-value=2.6  Score=31.08  Aligned_cols=54  Identities=9%  Similarity=-0.072  Sum_probs=41.0

Q ss_pred             hHHHHhhhHHhccc---HHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          320 RKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~---~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      .+-..|..+|-.++   ..+|...+++|+.+-+.+               +..+..++..+++.++|.+||.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~   64 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAID   64 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHH
Confidence            34456677754444   799999999999965443               4666778999999999999973

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=83.27  E-value=5.7  Score=29.01  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~  349 (388)
                      ..|..+-+.|.++|+.++|.+|...++++...-+
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te   84 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD   84 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence            6788888999999999999999999999997543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=82.78  E-value=1.8  Score=37.87  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=11.8

Q ss_pred             HhhhHHh----cccHHHHHHHHHHHHh
Q 016518          324 EGNLLFK----NGKYERAGKKYNKAAD  346 (388)
Q Consensus       324 ~Gn~~fk----~~~~~~A~~~Y~kal~  346 (388)
                      .|.-++.    .+++.+|+..|++|+.
T Consensus        44 lg~~~~~g~~~~~~~~~A~~~~~~a~~   70 (273)
T 1ouv_A           44 LGVLYYQGQGVEKNLKKAASFYAKACD   70 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence            3444444    5555555555555554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=82.45  E-value=1.9  Score=42.56  Aligned_cols=29  Identities=14%  Similarity=0.074  Sum_probs=22.2

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l  348 (388)
                      .....|+-+++.|++++|+..|.+++...
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  403 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMD  403 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34456778888888888888888888743

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=81.46  E-value=2.2  Score=37.35  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             hHHHHhhhHHh----cccHHHHHHHHHHHHhh
Q 016518          320 RKKEEGNLLFK----NGKYERAGKKYNKAADC  347 (388)
Q Consensus       320 ~~k~~Gn~~fk----~~~~~~A~~~Y~kal~~  347 (388)
                      .+...|.-++.    .+++.+|+..|++|+..
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            34455666667    77788888888777763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=80.90  E-value=1.6  Score=32.73  Aligned_cols=38  Identities=0%  Similarity=0.018  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       335 ~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|+..|.+++..-+..               ..++.|+|.+++++++|++|+
T Consensus         2 ~~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~   39 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAAL   39 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHH
Confidence            35888999999854432               467899999999999999986

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=80.09  E-value=1.4  Score=39.56  Aligned_cols=55  Identities=16%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|.-+++.|+|.+|+..|++|+..-+..               ...+.|+|.+|.++++|++|+
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~   92 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS---------------VKAHFFLGQCQLEMESYDEAI   92 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            3445678999999999999999999999864332               467899999999999999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=80.06  E-value=3.2  Score=32.64  Aligned_cols=52  Identities=13%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             HhHHHHhhhHHh----cccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCchhhh
Q 016518          319 GRKKEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk----~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lK----l~~~~~ai  387 (388)
                      ...-..|.-++.    .+++.+|+..|++|.+.- .                ...+.||+.+|..    .+++.+|+
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~----------------~~a~~~Lg~~y~~G~g~~~d~~~A~  117 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-D----------------QDGCLILGYKQYAGKGVVKNEKQAV  117 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-C----------------HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-C----------------HHHHHHHHHHHHCCCCCCcCHHHHH
Confidence            334455666666    788999999999988641 1                4567889999998    88888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-22
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	4e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-20
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-08
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-19
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-09
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	5e-18
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-13
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-17
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	1e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-07
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-15
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-05
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-15
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-11
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-15
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	0.001
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-13
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-05
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-12
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	8e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-12
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	2e-10
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.003
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-09
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.004
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.004

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 89.0 bits (220), Expect = 3e-22
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W
Sbjct: 68  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 33/146 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +D++  KDGG++K I ++G+    P     V V Y                         
Sbjct: 2   IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHY------------------------- 36

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             +  LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G
Sbjct: 37  --VGTLENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG 93

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDF 300
           +         IP  A L +EVE+ ++
Sbjct: 94  D---AGSPPKIPGGATLIFEVELFEW 116

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 2e-20
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V  
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             D  I TMK     V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 69  AWDIAIATMKV--GEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           VD+S  +D G++K I  +G     P   D V V Y   L DGT                 
Sbjct: 3   VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK---------------- 46

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                            D +    F   + +VI   D   ATMK  E   +T   EY +G
Sbjct: 47  ------------FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG 94

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKE 303
           +  +      IP  A L +EVE+ +F  E
Sbjct: 95  SAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 80.2 bits (197), Expect = 4e-19
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E          E  +G  G    +P N+ + FEVEL+ +
Sbjct: 63  WDIGVATMKKGEIC--HLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 31/140 (22%)

Query: 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL 220
           KD G++K +   G  + +P   D V V Y   L +G                        
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKK---------------------- 39

Query: 221 EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                     +D  +P  F   + QVI   D   ATMKK E   +    EY +G   +  
Sbjct: 40  ------FDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS-- 91

Query: 281 DLATIPSCAKLYYEVEMMDF 300
            L  IPS A L++EVE++DF
Sbjct: 92  -LPKIPSNATLFFEVELLDF 110

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.0 bits (189), Expect = 5e-18
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVA 102
           L + GI ++  + G  +  P  G  V IH  G    G  FD     +     +     + 
Sbjct: 5   LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGED--HDIP 61

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSW 153
            G+D  +  M++ E       L     FG  G+      PN+ + +EV L S+
Sbjct: 62  IGIDKALEKMQREEQC--ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 33/145 (22%)

Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
           DL +DGGI+++   +GE  ++P +   V +                    E       + 
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHL------------------EGRCGGRVFD 44

Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R    TV E + +              +  G+D+    M++EE  I+ +   YGFG  E
Sbjct: 45  CRDVAFTVGEGEDH-------------DIPIGIDKALEKMQREEQCILHLGPRYGFG--E 89

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIK 302
           A +    I   A+L YEV +  F K
Sbjct: 90  AGKPKFGIEPNAELIYEVTLKSFEK 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTG 99
              K +LK G   + P+ GD V   Y GTL DGT FD+             PL+FK+G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 100 QVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVS 152
           +V  G D  ++TM   +       +  E  +G +G+    +PPN+ + FEVELV 
Sbjct: 62  KVIRGWDEALLTMS--KGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
              K +L+KG++   P   D V   Y   L DGT+     +                   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQ------------------- 42

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                K     +PL F     +VI G D    TM K E A + I  E+ +G  +  +  A
Sbjct: 43  --TSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDA 98

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  AKL +EVE++D 
Sbjct: 99  KIPPNAKLTFEVELVDI 115

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 73.7 bits (180), Expect = 6e-16
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
           + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G   G+  +KK     
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGG--K 175

Query: 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153
               +P EL +G  G   +PPNS + F+VEL+  
Sbjct: 176 IKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           Y   L DG  F+     GE         + VI G       +KK     + I  E  +G 
Sbjct: 132 YKGTLIDGKEFDNSYTRGEP---LSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK 188

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                 +  IP  + L ++VE++D 
Sbjct: 189 ----AGVPGIPPNSTLVFDVELLDV 209

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
             +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G 
Sbjct: 6   GNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGW 65

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+ 
Sbjct: 66  DVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           +G +    +  G+    P   D V + Y   L +G     + + G  F            
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQ----------- 53

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                                  QVI G D     +   E A +TI   Y +G       
Sbjct: 54  -----------------CNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP-- 94

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  + L ++VE++ 
Sbjct: 95  -GLIPPNSTLVFDVELLK 111

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 2e-15
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI +++   G  +  P  G  V +   G   D       +        +     +  G
Sbjct: 7   DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---QRELRFEIGEGENLDLPYG 63

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITV 156
           L+  I  M+K E +     L     FG  G++    PPN+ +++E+ L S+   
Sbjct: 64  LERAIQRMEKGEHS--IVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 115

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 158 DLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           DL+  +DGGI+++I  +GE  A P +   V V  +    D                    
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
                              +      +   +  GL+R    M+K E +IV +   Y FG 
Sbjct: 45  ---------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG- 88

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               ++   IP  A+L YE+ +  F K K
Sbjct: 89  -SVGKEKFQIPPNAELKYELHLKSFEKAK 116

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   +      T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQR--AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+  + +  G+    P      +V Y  ML DG     + +    F              
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFK------------- 47

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                          F+  +++VI G +   A M   + A +TI+ +Y +G         
Sbjct: 48  ---------------FMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---G 89

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  A L ++VE++  
Sbjct: 90  IIPPHATLVFDVELLKL 106

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
            D VT+ Y G L+DGT FDST     P TF     QV  G    +  M           +
Sbjct: 116 SDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTW--EIYV 171

Query: 125 PSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           PS L +G       + PN  + F++ L+S 
Sbjct: 172 PSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           Y  RL DGTVF+       +P  F     QVI G       M       + +     +G 
Sbjct: 123 YTGRLIDGTVFDST-EKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGP 179

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIK 302
                    I     L +++ ++   K
Sbjct: 180 RSVG---GPIGPNETLIFKIHLISVKK 203

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P        +V  G 
Sbjct: 34  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGW 91

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M++ +   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 92  TEALQLMREGDR--WRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI----------- 138

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQ 190
                 + G +  +  ++DE+L K +
Sbjct: 139 ------KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 245 QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           +VI G       M++ +   + I ++  +G          IP  + L ++VE++     K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYG---VTGGGGMIPPYSPLEFDVELISI---K 139

Query: 305 VPWEMNNQGKIEAAGRKKEE 324
              +     +++   RK EE
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 29/81 (35%), Positives = 45/81 (55%)

Query: 304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVK 363
           K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  +
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 364 SLRVSCWLNSAACCLKLKDYQ 384
           S  ++ +LN A C LKL++Y 
Sbjct: 61  SFLLAAFLNLAMCYLKLREYT 81

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 26/71 (36%), Positives = 43/71 (60%)

Query: 307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLR 366
           WEMN++ K+E +   KE G + FK GKY++A  +Y K    +  + SF ++E +  ++LR
Sbjct: 2   WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 367 VSCWLNSAACC 377
           ++  LN A C 
Sbjct: 62  LASHLNLAMCH 72

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 60.8 bits (146), Expect = 7e-12
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKL 361
           +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D       + D      
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 362 VKSLRVSCWLNSAACCLKLKDYQ 384
            K++ +SC LN A C  K KDY 
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYP 84

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 18/119 (15%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFGVEGRD---SLPPNSVVQFEVELVSWITVVDLSKDGGIVK 167
           M+       T  +P+E  +G         +P ++  + + E    + ++       I +
Sbjct: 65  MEV--GDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 214 VSYIARLEDGTVFE------------KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           V YI +LE G VF+                   +PLEF+  E Q+I G +     M+  +
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 262 WAIVTINHEYGFG 274
              V I  E  +G
Sbjct: 70  EKTVKIPAEKAYG 82

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 8   SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 66

Query: 106 D------NGIITMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELV 151
           D      +GI  M        T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 67  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD   I + G  +D  K  S   +   LT   G+     G + G+I MK  +      T 
Sbjct: 5   GDIAIIDFTGI-VDNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 125 PSELRFGVEGRDSLPPNSVVQFEVELVS 152
           P    + V+       +  V FEV L +
Sbjct: 62  P--SDYHVKE----LQSKPVTFEVVLKA 83

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 299 DFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE 358
           DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D 
Sbjct: 8   DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 359 QKL-VKSLRVSCWLNSAACCLKLKDYQ 384
               ++ + +SC LN  AC LK+ D+Q
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQ 94

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347
           E     KE+GN     G  + A + Y++A   
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKL 32

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKA 344
           +A   KE+GN LF   KY  A   Y +A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA 30

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNS 373
           ++  A     +       G+Y+ A     +A +      +   +E          C    
Sbjct: 5   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGL 61

Query: 374 AACCLKLKDYQ 384
           A     L+ + 
Sbjct: 62  AEALAGLRSFD 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.92
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.91
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.9
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.88
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.85
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.83
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.8
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.52
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.44
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.43
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.42
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.23
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.04
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.94
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.25
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.01
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.4
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.18
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.59
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	95.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.22
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.21
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.13
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.65
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.44
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	94.4
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.78
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	93.33
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	93.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	92.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	92.06
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	88.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	87.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	87.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	86.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	84.6

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.4e-26  Score=182.95  Aligned_cols=110  Identities=41%  Similarity=0.675  Sum_probs=104.9

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEE
Q 016518           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (388)
Q Consensus        43 ~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~  122 (388)
                      .+++||+|+|+++|+|...|..||.|+|||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~--   85 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--   85 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEE--
Confidence            346999999999999977799999999999999999999999999889999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       123 ~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +|||++|||..+.+ .||++++|+|+|+|+++.
T Consensus        86 ~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          86 TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            99999999999987 899999999999999875

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=2.1e-26  Score=184.43  Aligned_cols=110  Identities=44%  Similarity=0.724  Sum_probs=104.9

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEE
Q 016518           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (388)
Q Consensus        43 ~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~  122 (388)
                      .+++||+|+++++|+|...|..||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|  
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~--   84 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--   84 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEE--
Confidence            357999999999999977899999999999999999999999998889999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       123 ~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +|||++|||..|.+ .||++++|.|+|+|+++.
T Consensus        85 ~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          85 TIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            99999999999987 899999999999999874

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-25  Score=177.52  Aligned_cols=116  Identities=34%  Similarity=0.501  Sum_probs=105.5

Q ss_pred             ecccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCC
Q 016518          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (388)
Q Consensus       156 ~~dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~  233 (388)
                      +.|++  .|+++.++++++|+|+..|..++.|++|                           |++++.||++||++ +++
T Consensus         2 ~~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~---------------------------y~~~l~dG~~fdss-~~~   53 (120)
T d1q1ca1           2 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVH---------------------------YTGWLLDGTKFDSS-LDR   53 (120)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTS
T ss_pred             ceeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEE---------------------------EEEEEcCCCEEEec-ccc
Confidence            35666  5899999999999999889999999865                           56666788999999 788


Q ss_pred             CCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       234 ~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      ++|++|.+|.+.+++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+.
T Consensus        54 ~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~---~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          54 KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS---PPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             SSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             ccceeeecCCCceeeeeeeeeccccCCcEEEEEECHHHhCCCcCC---CCCCCcCCcEEEEEEEEEEeC
Confidence            899999999999999999999999999999999999999999998   578999999999999999964

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=2.7e-26  Score=181.87  Aligned_cols=109  Identities=39%  Similarity=0.663  Sum_probs=84.7

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEE
Q 016518           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (388)
Q Consensus        44 ~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~  123 (388)
                      +++|++|+++++|+|...|..||.|+|||++++.||++|++|++.+.|+.|.+|.+++++||+++|.+|++||++++  +
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~--~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHL--L   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEE--E
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEE--E
Confidence            57999999999999977899999999999999999999999999889999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       124 vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      |||++|||..|.+ .||++++|+|+|+|++++
T Consensus        80 ip~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            9999999999977 899999999999999863

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-25  Score=177.37  Aligned_cols=110  Identities=39%  Similarity=0.605  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEE
Q 016518           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (388)
Q Consensus        42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~  121 (388)
                      ++.++||+|+++++|+|...|+.||.|++||++++.||++|++++....|+.|.++.+++++||+++|.+|++|+++++ 
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~-   80 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL-   80 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE-
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEE-
Confidence            3568999999999999966799999999999999999999999998889999999999999999999999999999999 


Q ss_pred             EEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          122 FTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       122 ~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                       .+||++|||..|.+ .||++++|+|+|+|+++
T Consensus        81 -~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          81 -TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             -EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             -EechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence             99999999999987 79999999999999876

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=176.64  Aligned_cols=105  Identities=33%  Similarity=0.668  Sum_probs=100.7

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCC
Q 016518           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (388)
Q Consensus        47 g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~  126 (388)
                      |++|+++++|+|...|+.||.|++||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++|++++|  +|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~--~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEE--EECH
Confidence            79999999999966689999999999999999999999998889999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       127 ~~~yg~~~~~-~ip~~~~l~~~i~l~~~  153 (388)
                      ++|||..+.+ .||++++|+|+|+|+++
T Consensus        79 ~laYG~~g~~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          79 DYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHhCCCCCCCCCCCcCCeEEEEEEEEEE
Confidence            9999999987 89999999999999986

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=2.3e-25  Score=178.25  Aligned_cols=113  Identities=36%  Similarity=0.588  Sum_probs=103.4

Q ss_pred             ccC--cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCC
Q 016518          158 DLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ  235 (388)
Q Consensus       158 dv~--~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~  235 (388)
                      |++  .|+++.++++++|+|+..|..++.|++|                           |++++.||++||++ +.++.
T Consensus         3 d~t~~~d~Gl~~~il~~G~G~~~p~~gd~V~v~---------------------------y~~~l~dG~v~dss-~~~~~   54 (118)
T d1r9ha_           3 DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVH---------------------------YVGTLENGTKFDSS-RDRGD   54 (118)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTS
T ss_pred             cccccCCCCEEEEEEECcCCCCCCCCCCEEEEE---------------------------EEEEEcCCCEEEEc-cccce
Confidence            555  6899999999999999899999999876                           55666788899988 78889


Q ss_pred             CeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       236 p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      |++|.+|.+.+++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|.
T Consensus        55 p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ipp~laYG~~g~---~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          55 QFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS---PPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             eeeeeccCcceeeeeeeeeeeecCCceEEEEECHHHhCCcCCC---CCccCcCCcEEEEEEEEEEe
Confidence            9999999999999999999999999999999999999999998   56899999999999999985

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.1e-25  Score=193.70  Aligned_cols=112  Identities=32%  Similarity=0.617  Sum_probs=106.7

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        37 ~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      ....+..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+
T Consensus        98 ~~~~v~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~  174 (210)
T d1q6ha_          98 KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGG  174 (210)
T ss_dssp             HSTTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTC
T ss_pred             ccCceEEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCC
Confidence            3455778899999999999999 89999999999999999999999999998999999997  79999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccc
Q 016518          117 CAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~  153 (388)
                      +++|  +|||++|||+.|.+.|||+++|+|+|+|+++
T Consensus       175 k~~~--~iP~~laYG~~g~~~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         175 KIKL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             EEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             EEEE--EECHHHCcCCCCCCCCCcCCcEEEEEEEEEE
Confidence            9999  9999999999999999999999999999986

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=8.9e-25  Score=191.87  Aligned_cols=113  Identities=30%  Similarity=0.453  Sum_probs=106.0

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCc
Q 016518           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (388)
Q Consensus        37 ~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge  116 (388)
                      ....+..+++|++|+++++|+| .+|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+
T Consensus        89 ~~~~v~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~  165 (204)
T d1fd9a_          89 NKPGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGS  165 (204)
T ss_dssp             HSTTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTC
T ss_pred             cCCceEEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCC
Confidence            3456777899999999999999 89999999999999999999999999988899999887  79999999999999999


Q ss_pred             eEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (388)
Q Consensus       117 ~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~  154 (388)
                      +++|  +|||++|||..|.+ .|||+++|+|+|+|+++.
T Consensus       166 ~~~~--~iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~  202 (204)
T d1fd9a_         166 TWEI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  202 (204)
T ss_dssp             EEEE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             EEEE--EEChHHCcCCCCCCCCcCcCCcEEEEEEEEEEE
Confidence            9999  99999999999987 799999999999999875

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.91  E-value=6.5e-25  Score=173.85  Aligned_cols=110  Identities=36%  Similarity=0.584  Sum_probs=82.1

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      .|+++.++++++|+|...|..++.|+++|.                           +++.||++||++ +..+.|++|.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~---------------------------~~l~dG~~~dss-~~~~~p~~f~   53 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYN---------------------------GKLANGKKFDSS-HDRNEPFVFS   53 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECC---------------------------CCSCC-------------CEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEE---------------------------EEECCCCEEEEE-Eecceeeeee
Confidence            478999999999999988999999987654                           455678888888 7888999999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +|.+++++||+.+|.+|++||+++|+|||++|||+.|.   .+.|||+++|+|+|+|++|+
T Consensus        54 lg~~~~i~G~~~~l~~M~~Ge~~~~~ip~~layG~~g~---~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          54 IGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS---LPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             TTSSSSCHHHHHSTTTCCTTCCEEEEC----CCCTTTC---TTTSCTTCCCEEEEEEEEEE
T ss_pred             cCCCcEEeeeeeeehhccCCcEEEEEECHHHhCCCCCC---CCcCCcCCeEEEEEEEEEEC
Confidence            99999999999999999999999999999999999987   57899999999999999985

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-24  Score=171.21  Aligned_cols=105  Identities=41%  Similarity=0.676  Sum_probs=98.3

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccC-------CCCCeEEeeCCCcccccHHHHhcccccCceEE
Q 016518           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        47 g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~-------~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      ++.|+|+++|+|...|+.||.|+|||++++.||++|++|+.       .++|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            57899999999977899999999999999999999999865       34799999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC--CCCCCCcEEEEEEEccc
Q 016518          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~--~ip~~~~l~~~i~l~~~  153 (388)
                      |  +|||++|||..|.+  .||++++|+|+|+|+++
T Consensus        82 ~--~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 L--EIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             E--EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             E--EECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            9  99999999999986  79999999999999876

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-24  Score=167.88  Aligned_cols=107  Identities=27%  Similarity=0.515  Sum_probs=97.8

Q ss_pred             cceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccC
Q 016518          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (388)
Q Consensus       164 ~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~  243 (388)
                      ++.++++++|+|+..|..++.|++|                           |.+++.||++||++ ++++.|++|.+|.
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~---------------------------y~g~l~dG~~~d~s-~~~~~p~~~~~g~   52 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVH---------------------------YTGMLEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEE---------------------------EEEEecCCeEEEee-eccceeeeEeeCc
Confidence            5788999999999889999999876                           56666788899988 7888999999999


Q ss_pred             CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       244 ~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +++++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+
T Consensus        53 ~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~---~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             chhheeehhhhcCccCCCEEEEEECHHHhCCCCCC---CCCCCcCCeEEEEEEEEEEC
Confidence            99999999999999999999999999999999997   56799999999999999985

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-23  Score=166.46  Aligned_cols=109  Identities=26%  Similarity=0.392  Sum_probs=100.3

Q ss_pred             CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEc
Q 016518          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (388)
Q Consensus       162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~l  241 (388)
                      |+++.++++++|+|+..|..++.|++|                           |++++.||++||++ +....|+.|.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~---------------------------y~~~~~dG~~~ds~-~~~~~~~~~~~   56 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIH---------------------------YTGTLENGQKFDSS-VDRGSPFQCNI   56 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTTTCCEEEET
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEE---------------------------EEEEEecCcEEecc-ccCCceEeeee
Confidence            678999999999999889999999876                           55666788899998 88889999999


Q ss_pred             cCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       242 G~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      |.+++++||+.+|.+|++||+++|++||++|||+.|.   ++.|||+++|+|+|+|++|.
T Consensus        57 ~~~~~i~G~~~~l~~M~~G~~~~~~iP~~laYG~~g~---~~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          57 GVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF---PGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             TSSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             ccCceeeehhhhcccccCCCEEEEEechHHeecCcCC---CCccCcCCeEEEEEEEEEeC
Confidence            9999999999999999999999999999999999998   56799999999999999973

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-23  Score=165.62  Aligned_cols=109  Identities=36%  Similarity=0.515  Sum_probs=94.0

Q ss_pred             cceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecC------CCCCCCe
Q 016518          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKG------YDGEQPL  237 (388)
Q Consensus       164 ~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~------~~~~~p~  237 (388)
                      .+.|+|+++|+|...|..++.|+|||.                           +++.||++||++.      ....+|+
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~---------------------------~~l~dG~~fdss~~~~~~~~~~~~p~   54 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYT---------------------------GTLQDGTVFDTNIQTSAKKKKNAKPL   54 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEE---------------------------EECTTSCEEEECCCSSCCTTTSSCCE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEE---------------------------EEECCCCEeecccccccccccCCCce
Confidence            467999999999989999999997755                           4555666777662      1245799


Q ss_pred             EEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          238 EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       238 ~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +|.+|.+++++||+.+|.+|++||+++|+|||++|||+.+.+.  ..|||+++|+|+|+|++|+
T Consensus        55 ~f~lg~~~~i~Gl~~~v~~M~~Ge~~~~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          55 SFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             eeeecccccccchheechhhcCCcEEEEEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999999999999999999999999999999998742  5799999999999999985

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=1.3e-23  Score=176.77  Aligned_cols=115  Identities=30%  Similarity=0.494  Sum_probs=103.7

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCce
Q 016518           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (388)
Q Consensus        38 ~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~  117 (388)
                      ..++..+|+||+|+++++|+|...|..||.|+|||++++.||++|++++..+.|  |.++.+.+|+||+++|.+|++|++
T Consensus        26 ~~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~  103 (160)
T d1jvwa_          26 QPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMREGDR  103 (160)
T ss_dssp             STTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCCTTCE
T ss_pred             CCCCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCccccce
Confidence            445677799999999999999667999999999999999999999999876566  556667999999999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccceee
Q 016518          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITV  156 (388)
Q Consensus       118 ~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~~  156 (388)
                      ++|  +|||++|||..|.+ .||++++|+|+|+|+++...
T Consensus       104 ~~v--~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~  141 (160)
T d1jvwa_         104 WRL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG  141 (160)
T ss_dssp             EEE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred             eEE--EeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecC
Confidence            999  99999999999876 89999999999999998653

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=8.2e-24  Score=171.33  Aligned_cols=110  Identities=34%  Similarity=0.572  Sum_probs=102.2

Q ss_pred             eeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhc------cccc
Q 016518           41 RGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII------TMKK  114 (388)
Q Consensus        41 ~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~------~m~~  114 (388)
                      +.++|+||+|+++++|+| .+|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.++++|++++.      .|++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            467899999999999999 799999999999999999999999999888999999999999999998875      4999


Q ss_pred             CceEEEEEEcCCCCCCCCCCCC------CCCCCCcEEEEEEEccc
Q 016518          115 RECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSW  153 (388)
Q Consensus       115 Ge~~~v~~~vp~~~~yg~~~~~------~ip~~~~l~~~i~l~~~  153 (388)
                      |++++|  +|||++|||..|..      .||++++|+|+|+|+.+
T Consensus        82 G~k~~v--~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEE--EECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999  99999999998742      69999999999999864

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.88  E-value=1.7e-22  Score=161.15  Aligned_cols=110  Identities=30%  Similarity=0.530  Sum_probs=95.7

Q ss_pred             cccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCC
Q 016518          157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQP  236 (388)
Q Consensus       157 ~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p  236 (388)
                      +|++.|+++.|+++++|+|+..|..++.|++||..++                            +|++|+++      +
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~----------------------------~g~~~~~~------~   47 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC----------------------------GGRVFDCR------D   47 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE----------------------------TTEEEEEE------E
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe----------------------------CCcccccc------c
Confidence            5789999999999999999999999999998876543                            45666665      5


Q ss_pred             eEEEccCC---cccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          237 LEFITDEE---QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       237 ~~f~lG~~---~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      ..|.++.+   .+++||+.+|.+|++||+++|+|||++|||+.+.+  +..|||+++|+|+|+|++|++
T Consensus        48 ~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v~ip~~~ayG~~g~~--~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          48 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKP--KFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGSSCTTCBT--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             cCceeeeccccccCchhHhhhccchhhceeEEEeCHHHCcCCCCCC--CCCcCcCCeEEEEEEEEEEEe
Confidence            67777754   58999999999999999999999999999999873  247999999999999999986

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.86  E-value=1.1e-21  Score=164.96  Aligned_cols=116  Identities=22%  Similarity=0.355  Sum_probs=99.2

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      -+.++..+++++|.|...|..++.|+||                           |.+++.||++||++ +....|+  .
T Consensus        32 ~~sGl~y~il~~G~G~~~P~~gd~V~v~---------------------------Y~g~l~dG~~fds~-~~~~~p~--~   81 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKRAPAIDDKCEVH---------------------------YTGRLRDGTVFDSS-RERGKPT--T   81 (160)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEE---------------------------EEEECTTSCEEEEH-HHHTSCE--E
T ss_pred             CCCCCEEEEEECcccccCCCCCcceEEE---------------------------EEEEEccCCeeeee-ccccCcc--c
Confidence            4567999999999998889999999876                           55666688889888 5666674  5


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCcccc
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM  309 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~~~l  309 (388)
                      ++.+.+++||+.+|.+|++||+++|+|||++|||..|.   .+.|||+++|+|+|+|++|++......+
T Consensus        82 ~~~~~~i~G~~e~l~~M~~Ge~~~v~iPp~laYG~~g~---~~~IPp~s~LifeIeLl~i~~~~~~~~~  147 (160)
T d1jvwa_          82 FRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG---GGMIPPYSPLEFDVELISIKDGGKGRTA  147 (160)
T ss_dssp             ECGGGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS---SSSSCTTCCEEEEEEEEEEGGGCCSCBH
T ss_pred             cCccccchhHHHHhcCccccceeEEEeCHHHCcCCCCC---CCCcCcCCcEEEEEEEEEEecCCCCCCh
Confidence            56679999999999999999999999999999999987   5679999999999999999876665544

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=1.7e-21  Score=155.21  Aligned_cols=105  Identities=28%  Similarity=0.562  Sum_probs=94.1

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCC---CcccccHHHHhcccccCceEE
Q 016518           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT---GQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        43 ~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~---~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      ++++||.|+|+++|+|...|..||.|+|||+++. +|++++++     +..|.++.   +.+|+||+++|.+|++||+++
T Consensus         5 ~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~   78 (115)
T d1kt1a3           5 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCI   78 (115)
T ss_dssp             TSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhceeE
Confidence            5799999999999999778999999999999996 88888764     46677765   358999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC--CCCCCCcEEEEEEEcccee
Q 016518          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWIT  155 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~--~ip~~~~l~~~i~l~~~~~  155 (388)
                      |  +|||++|||..|.+  .||++++|+|+|+|+++..
T Consensus        79 v--~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          79 L--HLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             E--EECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             E--EeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            9  99999999999977  6999999999999998853

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=2e-21  Score=170.27  Aligned_cols=108  Identities=25%  Similarity=0.395  Sum_probs=97.5

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      -+.++..+++++|+|. .|..++.|++|                           |+|++.||++||++ +.++.|++|.
T Consensus        96 ~~sGl~y~v~~~G~G~-~p~~~d~v~v~---------------------------y~g~l~dg~~f~~s-~~~~~p~~~~  146 (204)
T d1fd9a_          96 LPSGLQYKVINSGNGV-KPGKSDTVTVE---------------------------YTGRLIDGTVFDST-EKTGKPATFQ  146 (204)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             ecCccEEEEeecCCCc-ccCCCCEEEEE---------------------------EEEEECCCCEeccc-ccCCCCceec
Confidence            3567899999999996 68889988865                           77777899999999 7888999998


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~  302 (388)
                      +|  ++++||+.+|.+|++|++++|+|||++|||+.|.   ++.|||+++|+|+|+|++|++
T Consensus       147 ~~--~~i~G~~e~l~~m~~G~~~~~~iP~~laYG~~g~---~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         147 VS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV---GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC---SSSCCTTCCEEEEEEEEEEEC
T ss_pred             CC--ccchhHHHHhcCCCCCCEEEEEEChHHCcCCCCC---CCCcCcCCcEEEEEEEEEEEc
Confidence            86  7999999999999999999999999999999998   578999999999999999975

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.4e-21  Score=168.73  Aligned_cols=106  Identities=31%  Similarity=0.549  Sum_probs=96.2

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      ...++..+++++|+|. .|..++.|+||                           |+|++.||++||+| +.++.|+.|.
T Consensus       105 ~~sGl~y~v~~~G~G~-~p~~gd~v~v~---------------------------y~g~l~dG~~fd~s-~~~~~p~~~~  155 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR  155 (210)
T ss_dssp             CTTSCEEEEEECCSSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEG-GGGTSCEEEE
T ss_pred             ccCceEEEEeeCCCCC-CCCCCceEEEE---------------------------EEEEEcCCCEEeec-ccCCCcceec
Confidence            4568899999999985 78999998865                           77778899999999 8889999999


Q ss_pred             ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (388)
Q Consensus       241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~  301 (388)
                      +|  ++|+||+.+|.+|++|++++|+|||++|||+.|.    +.|||+++|+|+|+|++|+
T Consensus       156 ~~--~vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~----~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         156 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             GG--GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB----TTBCTTCCEEEEEEEEEEC
T ss_pred             cC--ccchhHHHHHhhccCCCEEEEEECHHHCcCCCCC----CCCCcCCcEEEEEEEEEEC
Confidence            97  7999999999999999999999999999999997    5699999999999999984

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=151.06  Aligned_cols=109  Identities=34%  Similarity=0.529  Sum_probs=91.7

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      .|+++.++++++|.|+..|..++.|++||+.++.+++                            |+.+      +..|.
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~----------------------------~~~~------~~~~~   51 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL----------------------------FDQR------ELRFE   51 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE----------------------------EEEE------EEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc----------------------------Eeec------cccce
Confidence            7899999999999999999999999998777665443                            3333      34455


Q ss_pred             ccCC---cccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcC
Q 016518          241 TDEE---QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV  305 (388)
Q Consensus       241 lG~~---~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~  305 (388)
                      .+.+   .+++||+.+|.+|++||+++|+|||++|||..+.+  ...|||+++|+|+|+|++|++.++
T Consensus        52 ~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~ip~~~ayG~~g~~--~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          52 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE--KFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             TTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG--GGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             eeecceeeeCcHHHHhhhcchhhCeEEEEECHHHhCcccCCC--CCccCcCCeEEEEEEEEEEEeCCC
Confidence            5543   68999999999999999999999999999999873  257999999999999999997653

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-21  Score=152.46  Aligned_cols=106  Identities=27%  Similarity=0.519  Sum_probs=92.1

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCC---CcccccHHHHhcccccCceEE
Q 016518           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT---GQVATGLDNGIITMKKRECAV  119 (388)
Q Consensus        43 ~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~---~~~~~g~~~~l~~m~~Ge~~~  119 (388)
                      ..++||+|+|+++|+|..+|..||.|+|||++++.||. ++++     +..|..+.   ..+++||+++|.+|++|++++
T Consensus         5 ~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~   78 (117)
T d1q1ca2           5 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   78 (117)
T ss_dssp             TCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             cCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEE
Confidence            45799999999999997789999999999999987664 5443     34555554   368999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC--CCCCCCcEEEEEEEccceee
Q 016518          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV  156 (388)
Q Consensus       120 v~~~vp~~~~yg~~~~~--~ip~~~~l~~~i~l~~~~~~  156 (388)
                      +  +|||++|||..|.+  .||++++|+|+|+|+++...
T Consensus        79 i--~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~  115 (117)
T d1q1ca2          79 V--YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  115 (117)
T ss_dssp             E--EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             E--EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeC
Confidence            9  99999999999976  79999999999999998754

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=9e-20  Score=147.21  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=95.4

Q ss_pred             cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (388)
Q Consensus       161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~  240 (388)
                      ...++..+++++|+|. .|..++.|++|                           |++++.||++||+| +..+.|+.|.
T Consensus         6 ~psGl~y~~~~~G~G~-~p~~gd~V~v~---------------------------y~g~l~~G~~fdss-~~~~~p~~~~   56 (125)
T d1u79a_           6 SPSGLAFCDKVVGYGP-EAVKGQLIKAH---------------------------YVGKLENGKVFDSS-YNRGKPLTFR   56 (125)
T ss_dssp             CTTSCEEEEEECCSSC-BCCTTCEEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEE
T ss_pred             CCCCCEEEEEEeccCC-CCCCCCEEEEE---------------------------EEeeecCCcEEecc-cccCcceeEe
Confidence            3457889999999996 79999999876                           55666688999998 7788999999


Q ss_pred             ccCCcccchHHHHHc------cccCCcEEEEEecCCCCCCCccccc--CCCCCCCCCeEEEEEEEeee
Q 016518          241 TDEEQVIAGLDRVAA------TMKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (388)
Q Consensus       241 lG~~~v~~gle~~l~------~M~~Ge~~~v~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~veL~~~  300 (388)
                      +|.+.++++|+.++.      .|++|++++|+|||++|||++|...  ..+.|||+++|+|+|||+.+
T Consensus        57 ~g~~~~i~g~~~~i~g~~~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          57 IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCccccccchhhhccchhhcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999885      5999999999999999999987521  13569999999999999986

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.70  E-value=1.1e-18  Score=144.82  Aligned_cols=126  Identities=23%  Similarity=0.460  Sum_probs=90.7

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccC-------------CCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCC
Q 016518           62 PEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (388)
Q Consensus        62 ~~~gd~V~v~y~~~~~dg~~~~ss~~-------------~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~  128 (388)
                      +++||.|++||++++.||++|++|++             .++|+.|++|.++++|||+++|.+|++|++++|  .+||+.
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v--~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTTT
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEE--EeCHHH
Confidence            68999999999999999999999964             357999999999999999999999999999999  999999


Q ss_pred             CCCCCCCC---CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518          129 RFGVEGRD---SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (388)
Q Consensus       129 ~yg~~~~~---~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~  201 (388)
                      |||.++..   .+|........+++...   .....+ +...+|++        ..++.|+++|||+|+|.++.|+
T Consensus        80 ayG~~d~~~v~~vp~~~f~~~~~~~~~~---~~~~~~-~~~~~V~~--------v~~~~v~vD~NHPlAG~~L~f~  143 (151)
T d1ix5a_          80 AYGNRNEMLIQKIPRDAFKEADFEPEEG---MVILAE-GIPATITE--------VTDNEVTLDFNHELAGKDLVFT  143 (151)
T ss_dssp             SSCSCCSTTBCCEETHHHHTSTTCCCTT---EEEESS-SCEEEEEE--------EETTEEEEECCCSSTTCCEEEE
T ss_pred             hccccccCccceehhhhccccccccccc---eEEecC-CCceEEEE--------EcCCEEEEECCCcCCCCeEEEE
Confidence            99998755   22221110000000000   000011 11112222        1456899999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.52  E-value=2.2e-14  Score=121.06  Aligned_cols=85  Identities=34%  Similarity=0.562  Sum_probs=81.1

Q ss_pred             cCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCc
Q 016518          304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (388)
Q Consensus       304 ~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~  383 (388)
                      ++.|.|+..|+++.|+.+++.||.+|+.|+|..|+..|++|+.+++.......++......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            57899999999999999999999999999999999999999999999888888888899999999999999999999999


Q ss_pred             hhhhC
Q 016518          384 QGIRL  388 (388)
Q Consensus       384 ~~ai~  388 (388)
                      .+|++
T Consensus        81 ~~Ai~   85 (168)
T d1kt1a1          81 TKAVE   85 (168)
T ss_dssp             HHHHH
T ss_pred             ccchh
Confidence            99973

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-13  Score=116.18  Aligned_cols=82  Identities=35%  Similarity=0.624  Sum_probs=78.9

Q ss_pred             ccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (388)
Q Consensus       306 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~  385 (388)
                      +|+|+.+++++.|..+++.||.+|+.|+|..|+..|++|+.+++......+++...+..++..+|+|+|.||+++++|.+
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999999888888888899999999999999999999999999


Q ss_pred             hh
Q 016518          386 IR  387 (388)
Q Consensus       386 ai  387 (388)
                      |+
T Consensus        81 A~   82 (170)
T d1p5qa1          81 AI   82 (170)
T ss_dssp             HH
T ss_pred             cc
Confidence            87

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.44  E-value=1.9e-13  Score=113.33  Aligned_cols=86  Identities=31%  Similarity=0.385  Sum_probs=76.5

Q ss_pred             CcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh-HHHHHHHHHHHHhhhHHHHHHHHcc
Q 016518          303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKLVKSLRVSCWLNSAACCLKLK  381 (388)
Q Consensus       303 ~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~~~~~~NlA~c~lKl~  381 (388)
                      .++.|.|+.+|+++.|..+++.||.+|+.|+|.+|+..|++|++++.......+ ........+.+.+|+|+|+||++++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            367899999999999999999999999999999999999999999987555544 3456677889999999999999999


Q ss_pred             CchhhhC
Q 016518          382 DYQGIRL  388 (388)
Q Consensus       382 ~~~~ai~  388 (388)
                      +|.+|++
T Consensus        82 ~~~~Al~   88 (153)
T d2fbna1          82 DYPKAID   88 (153)
T ss_dssp             CHHHHHH
T ss_pred             ccchhhh
Confidence            9999873

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.43  E-value=4.5e-14  Score=116.60  Aligned_cols=65  Identities=34%  Similarity=0.551  Sum_probs=55.3

Q ss_pred             eEEEEeecCceEEeecC------------CCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518          214 VSYIARLEDGTVFEKKG------------YDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (388)
Q Consensus       214 v~y~g~~~dg~~fd~s~------------~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  278 (388)
                      +||++++.||++||+|.            ....+|++|.+|.++++||||.+|.+|+.|++..|.+||+.|||.+..
T Consensus        10 v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ayG~~d~   86 (151)
T d1ix5a_          10 VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhcccccc
Confidence            45666677778888772            124579999999999999999999999999999999999999998654

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.42  E-value=2.2e-13  Score=101.20  Aligned_cols=84  Identities=24%  Similarity=0.391  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (388)
Q Consensus        61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~  140 (388)
                      ++..||.|+|+|+++. ||+.++++..  ..+.|.+|.+.++|||+++|.+|++|+++.|  .+++...|+...    .+
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~--~i~~p~~y~~~~----la   71 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSDYHVKE----LQ   71 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTTSSSSG----GG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEE--EEEChhhcCccc----CC
Confidence            4678999999999996 9999998763  6899999999999999999999999999999  888888888765    37


Q ss_pred             CCcEEEEEEEccc
Q 016518          141 NSVVQFEVELVSW  153 (388)
Q Consensus       141 ~~~l~~~i~l~~~  153 (388)
                      |.++.|+|+++++
T Consensus        72 Gk~~~f~V~v~~V   84 (85)
T d1hxva_          72 SKPVTFEVVLKAI   84 (85)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCcEEEEEEEEEe
Confidence            8999999999876

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.23  E-value=1.2e-11  Score=91.56  Aligned_cols=75  Identities=13%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             EEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEE
Q 016518          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (388)
Q Consensus       215 ~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~  294 (388)
                      +|+|++ ||+.|+++   ....+.|.+|.+.++|||+.+|.+|++|++..|.+++..+|+..+.        +|.++.|+
T Consensus        11 dy~g~~-dG~~~~~~---~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l--------aGk~~~f~   78 (85)
T d1hxva_          11 DFTGIV-DNKKLASA---SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL--------QSKPVTFE   78 (85)
T ss_dssp             EEEEEE-TTEECSTT---CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG--------GSCCCEEE
T ss_pred             EEEEEE-CCEEcccc---cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC--------CCCcEEEE
Confidence            355554 77777765   3467889999999999999999999999999999999999988554        57899999


Q ss_pred             EEEeeee
Q 016518          295 VEMMDFI  301 (388)
Q Consensus       295 veL~~~~  301 (388)
                      |+|++|+
T Consensus        79 V~v~~Vk   85 (85)
T d1hxva_          79 VVLKAIK   85 (85)
T ss_dssp             EEECCBC
T ss_pred             EEEEEeC
Confidence            9999874

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2.1e-10  Score=88.35  Aligned_cols=87  Identities=24%  Similarity=0.439  Sum_probs=74.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip  139 (388)
                      +.++.||.|+|+|+++ .||+.+.+...  ..+.|.+|.+.++++|+.+|.||++|++..|++.+|.++.-...      
T Consensus        13 r~a~~GD~v~id~~~~-~dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l------   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGS-VDGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL------   83 (106)
T ss_dssp             SSCCTTEEEEEEEECC-SSSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT------
T ss_pred             ccccCCCEEEEEEEEE-ECCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh------
Confidence            4678999999999986 49999876532  57899999999999999999999999999998888877654333      


Q ss_pred             CCCcEEEEEEEcccee
Q 016518          140 PNSVVQFEVELVSWIT  155 (388)
Q Consensus       140 ~~~~l~~~i~l~~~~~  155 (388)
                      +|..+.|.|+++.+..
T Consensus        84 aGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          84 KGKAAKFAINLKKVEE   99 (106)
T ss_dssp             TTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEecc
Confidence            7899999999988764

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.94  E-value=4.5e-10  Score=87.55  Aligned_cols=87  Identities=22%  Similarity=0.499  Sum_probs=74.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (388)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip  139 (388)
                      ..++.||.|+|+|+++. ||..+.+...  ..+.|.+|.+.++++|+.+|.||++|+++.|++.+|.++.-...      
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l------   92 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL------   92 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT------
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc------
Confidence            35889999999999875 8998877542  67999999999999999999999999999998888887654433      


Q ss_pred             CCCcEEEEEEEcccee
Q 016518          140 PNSVVQFEVELVSWIT  155 (388)
Q Consensus       140 ~~~~l~~~i~l~~~~~  155 (388)
                      +|.++.|.|++..+..
T Consensus        93 aGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          93 KGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SSCEEEECCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEEe
Confidence            7899999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=8.5e-09  Score=85.81  Aligned_cols=79  Identities=30%  Similarity=0.413  Sum_probs=65.7

Q ss_pred             CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +.++.+..+..++..||.+|+.|+|..|+..|++|+.+++... .....+...+......+++|+|.||+++++|.+||.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            4567889999999999999999999999999999999876422 122334445677889999999999999999999973

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.2e-08  Score=79.49  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=53.9

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .++-++.|..++.+||.+|+.|+|..|+..|++|+.+-+..               ..+|.|++.|++++++|.+|+
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~   64 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYAL   64 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHH
Confidence            35678999999999999999999999999999999975442               577888888888888888875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.8e-08  Score=77.37  Aligned_cols=57  Identities=30%  Similarity=0.408  Sum_probs=51.3

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.|...|+.||.+|+.|+|.+|+.+|++|+++.+..               ..++.|+|.||.++++|.+|+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~   58 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCR   58 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHH
Confidence            468899999999999999999999999999975432               578999999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.5e-08  Score=75.70  Aligned_cols=56  Identities=25%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+++++++||.+|+.|+|++|+..|++|+..-+..               ..+|.|+|.||+++++|.+|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~   57 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAY   57 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---------------hhhhhcccccccccccccccc
Confidence            57889999999999999999999999999875543               467777777777777777775

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.6e-06  Score=65.95  Aligned_cols=61  Identities=7%  Similarity=0.089  Sum_probs=50.5

Q ss_pred             CCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecC
Q 016518          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (388)
Q Consensus       235 ~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~  303 (388)
                      ..+.|.+|.+.+++||+.+|.+|++|+...|.+.....|..        .--.|.++.|+|+|++|...
T Consensus        40 ~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~--------~~laGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          40 SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA--------ENLKGKAAKFAINLKKVEER  100 (106)
T ss_dssp             EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC--------TTTTTCCEEEEEEEEEEECC
T ss_pred             cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc--------hhhCCCEEEEEEEEEEeccc
Confidence            45789999999999999999999999999999964444433        23468899999999999764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.25  E-value=9.4e-07  Score=72.01  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.+..+......|+.+|+.|+|.+|+..|++|+.+.+..+.....   ........+|+|++.||.++++|.+|+
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~   75 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEAL   75 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhh
Confidence            456678888889999999999999999999999988764432111   113345689999999999999999986

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.13  E-value=1e-06  Score=67.99  Aligned_cols=86  Identities=7%  Similarity=0.082  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHcccc
Q 016518          179 PGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMK  258 (388)
Q Consensus       179 p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~  258 (388)
                      +..++.|+++|...+.|.                            .|...   ....+.|.+|.+.++++|+.+|.+|+
T Consensus        24 a~~gD~v~id~~~~~dG~----------------------------~~~~~---~~~~~~~~lg~~~~~~~f~~~L~G~k   72 (113)
T d1t11a3          24 AENGKRVSIDFVGSIDGV----------------------------EFEGG---KAENFPLEMGAGRMIPGFEDGIVGKT   72 (113)
T ss_dssp             CCTTCEEEEEEEEESSSS----------------------------CCTTC---EEEEEEEETTSCCBSTTSGGGTTTCC
T ss_pred             ccCCCEEEEEEEEEECCE----------------------------EccCC---ccceEEEEeccccccccHHHhhcCCc
Confidence            457889999887766443                            22221   23467899999999999999999999


Q ss_pred             CCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecC
Q 016518          259 KEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (388)
Q Consensus       259 ~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~  303 (388)
                      +|+...|.++-...|....        -.|.++.|.|+|++|...
T Consensus        73 ~Ge~~~~~~~~Ped~~~~~--------laGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          73 KGMEFVIDVTFPEDYHAEN--------LKGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             SSCCCCEEEECCTTCSCTT--------TSSCEEEECCCEEEEEEE
T ss_pred             CCCEEEEEEeCCCcCCccc--------cCCCeEEEEEEEEEEEec
Confidence            9999998886444444322        257899999999999763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.7e-06  Score=61.85  Aligned_cols=63  Identities=16%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +..+-+.|+.+|+.|+|..|+..|++|++..+.......        .+..++.|++.|+.++++|++|++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~--------~~~~~l~~Lg~~~~~~g~~~~A~~   67 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI--------DKVSVLDYLSYAVYQQGDLDKALL   67 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS--------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc--------cHHHHHHHHhhHHHhcCChHHHHH
Confidence            445668899999999999999999999998865432221        245789999999999999999973

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=7.7e-06  Score=68.34  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      |+.+|+.||.+|+.|+|.+|+..|++|+..-+.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~   36 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL   36 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            678999999999999999999999999997544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00052  Score=56.64  Aligned_cols=73  Identities=14%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-------CCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-------GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-------~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.....+...|+.++..|++..|+..|.+|+.+....       ..+-..+...+....+.++.|+|.+++++++|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4567788899999999999999999999999976432       112245667888899999999999999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.08  E-value=0.00023  Score=53.89  Aligned_cols=51  Identities=14%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      -..|..+++.|+|.+|+..|++|+..-+..               ..+|.+++.|+.++++|.+|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~   70 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAI   70 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhh
Confidence            456777888888888888888888754332               355555666666666555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00053  Score=52.15  Aligned_cols=55  Identities=16%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|+-+++.|+|..|+..|.+|+++-+..               ...|.|++.|+.++++|++|+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------------GKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccch---------------hhHHHHHHHHHHHccCHHHHH
Confidence            3446677999999999999999999999875543               468899999999999999987

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0005  Score=57.29  Aligned_cols=52  Identities=8%  Similarity=0.040  Sum_probs=45.5

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +-..|+-+++.|+|+.|+..|++|+++-+..               ...|.|++.||.++++|.+|+
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHH
Confidence            5578999999999999999999999864432               688999999999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0007  Score=58.03  Aligned_cols=57  Identities=14%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..+..+-..|+-+++.|+|++|+..|++|+.+-+..               ...|.|+|.||.++++|++|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------------~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------------HHHHhhhchHHHHHHHHHHhh
Confidence            357778889999999999999999999999865432               456777888888888887775

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.78  E-value=0.001  Score=53.13  Aligned_cols=67  Identities=18%  Similarity=0.061  Sum_probs=52.3

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|+.+++.|+|..|+..|.+|+.+++.......+.    ......+|+|++.||.++++|++|+
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~  120 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAM  120 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHH
Confidence            455677889999999999999999999999886533222222    1223567899999999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.60  E-value=0.00099  Score=50.14  Aligned_cols=56  Identities=14%  Similarity=-0.050  Sum_probs=48.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +..+...|.-+++.+++.+|+..|++|+.+-+..               ...+.|+|.||.+++++++|++
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------------IAVHAALAVSHTNEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccccccccc---------------ccchHHHHHHHHHCCCHHHHHH
Confidence            4556778999999999999999999999965442               5788999999999999999873

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.0028  Score=51.09  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=46.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .+..+...|.-+++.|+|.+|+..|++||.+-+..               ...|.|+|.||.++++|++|+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~  131 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQAL  131 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHH
Confidence            34445567899999999999999999999854332               567899999999999999986

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0033  Score=55.28  Aligned_cols=69  Identities=17%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             CchhHHH-HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          310 NNQGKIE-AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       310 ~~~e~~~-~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +...+.+ .+..+...||-+...++|++|+..|.+|+.+......         ..-...+|.|++.||.++++|++|+
T Consensus        28 ~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          28 SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            3444554 4667788899999999999999999999997654221         1123689999999999999999987

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.18  E-value=0.0044  Score=49.15  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=46.0

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+-..|.-+++.++|.+|+..|++||.+-+..               +.+|.|+|.||.++++|++|+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~  121 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAK  121 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHH
Confidence            344567888999999999999999999864432               578999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0066  Score=46.45  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL  388 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~  388 (388)
                      +.-+...|+-+++.|+|..|+..|.+|+.+.+.....        ......+|.+++.++..+++|++|++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--------~~~~a~~~~~lg~~~~~~~~~~~A~~  100 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIH  100 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--------HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4456778999999999999999999999876543311        23456789999999999999999873

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0063  Score=48.25  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +.-+...|.-+++.|++.+|+..|.+|+.+-+..               ...+.|+|.|+..+++|.+|+
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---------------~~a~~~~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAAL   98 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHcCCHHHHH
Confidence            3445678999999999999999999999865442               467899999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0046  Score=54.49  Aligned_cols=50  Identities=14%  Similarity=0.103  Sum_probs=36.8

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++|..+|+.|+|.+|+..|++|++.-+..               ...|.++|.|+.++++|++|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~A~   73 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAI   73 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHH
Confidence            57999999999999999999999865432               344556666666666666554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.69  E-value=0.0098  Score=47.71  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .-+-..|.-+++.++|.+|+..|++|+.+-+..               ...|.|+|.||..+++|++|+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~  118 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAK  118 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            334457888899999999999999999864432               578999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.011  Score=47.50  Aligned_cols=52  Identities=17%  Similarity=0.117  Sum_probs=44.8

Q ss_pred             HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +-..|.-+++.|+|.+|+..|.+||.+-+..               +.++.++|.||.++++|++|+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~  116 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELAR  116 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHH
Confidence            3457888999999999999999999864432               678999999999999999986

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.017  Score=41.73  Aligned_cols=67  Identities=15%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHHHH
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACC  377 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~c~  377 (388)
                      ....+..|..+-.++-++=+.|+|..|+.+|.+|+.+|.. .....+...++.-.-++.=|+++|-..
T Consensus         8 ~~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_           8 QDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3557788999999999999999999999999999999854 222234555566667788888888764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.014  Score=49.40  Aligned_cols=55  Identities=11%  Similarity=0.010  Sum_probs=46.5

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|.-+++.|+|++|+..|++|+++-+..               ...+.|++.|+.++++|.+|+
T Consensus        71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---------------hhhHHHHHHHHHHHhhHHHHH
Confidence            3446678999999999999999999999965443               357899999999999999886

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0059  Score=46.58  Aligned_cols=66  Identities=17%  Similarity=0.099  Sum_probs=45.2

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCC------------CCChHHH-HH---HH--------HHHHHhhhHHHHHH
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDG------------SFVDDEQ-KL---VK--------SLRVSCWLNSAACC  377 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~------------~~~~~~~-~~---~~--------~~~~~~~~NlA~c~  377 (388)
                      -...|.++..++|++|...|++|+..-+...            ....++. +.   ++        ..+..++.|+|.||
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3567888999999999999999998554311            0111111 11   11        12345789999999


Q ss_pred             HHccCchhhh
Q 016518          378 LKLKDYQGIR  387 (388)
Q Consensus       378 lKl~~~~~ai  387 (388)
                      .++++|++|+
T Consensus        83 ~~~g~~~~A~   92 (122)
T d1nzna_          83 YRLKEYEKAL   92 (122)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHHhhhHHHH
Confidence            9999999997

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.013  Score=51.43  Aligned_cols=55  Identities=16%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|+-+++.|+|.+|+..|++|+++-+..               ...+.|++.||.++++|++|+
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---------------IRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHhhcc---------------HHHHHHHHHHHHHCCCHHHHH
Confidence            3345566777788888888888888888753221               457889999999999999886

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.019  Score=50.16  Aligned_cols=61  Identities=25%  Similarity=0.286  Sum_probs=47.9

Q ss_pred             HHhHHHHhhhHHhc-ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+...|+-+++. ++|++|+..|++|+.+......         ......++.|+|.++.++++|.+|+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---------~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---------hhhhhhHHHHHHHHHHHcChHHHHH
Confidence            44556667777764 9999999999999997754321         2344678999999999999999987

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.031  Score=48.48  Aligned_cols=60  Identities=8%  Similarity=-0.076  Sum_probs=46.9

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ++-.--.|.-++..|+|++|+..|++|+...+...          ...+...+.+++.||..+++|++|+
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~----------~~~~~~a~~~lg~~~~~~g~~~~A~   71 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSL   71 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC----------cHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            44444468889999999999999999998765432          2334667888999999999998886

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0032  Score=52.09  Aligned_cols=70  Identities=17%  Similarity=0.095  Sum_probs=47.8

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHH-HHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK-LVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~-~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      +..+-..|.-+++.|+|..|+..|.+|+.+++........... .........+.|+|.|+.++++|.+|+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            4455778999999999999999999999876542211000000 000001235679999999999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.026  Score=40.54  Aligned_cols=47  Identities=11%  Similarity=-0.061  Sum_probs=36.3

Q ss_pred             HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 016518          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK  379 (388)
Q Consensus       318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lK  379 (388)
                      +.-+...|+-+++.|+|++|+..|++||++-+..               ..++.|++.+.--
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---------------~~a~~Nl~~~~~~   92 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---------------QRANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHH
Confidence            4556678999999999999999999999975442               3566777665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.027  Score=42.67  Aligned_cols=29  Identities=14%  Similarity=-0.038  Sum_probs=25.1

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      ...|..+++.|+|.+|+..|++||.+-+.
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            45899999999999999999999996544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.024  Score=49.95  Aligned_cols=53  Identities=21%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      .....|+-+++.|+|.+|+..|++|+...+..               ..++.|+|.|+.++++|++|+
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---------------HHHHHHHHHHHHTTTCCHHHH
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence            34556777888899999999999988754331               467889999999999999986

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.78  E-value=0.042  Score=37.84  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (388)
Q Consensus       314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  350 (388)
                      -++.|...-..+..+.+.|+|++||.++++|+.+|..
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3677888888999999999999999999999999964

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.057  Score=47.39  Aligned_cols=51  Identities=10%  Similarity=-0.021  Sum_probs=29.4

Q ss_pred             HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ...|.-+++.|+|++|+..|++|++.-+..               ...+.++|.||.++++|++|+
T Consensus        37 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_          37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---------------AEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHhhhhccccccc
Confidence            334445555555555555555555432211               345677788888888877775

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.029  Score=38.87  Aligned_cols=66  Identities=18%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-C-CCChHHHHHHHHHHHHhhhHHHHH
Q 016518          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-G-SFVDDEQKLVKSLRVSCWLNSAAC  376 (388)
Q Consensus       311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~-~~~~~~~~~~~~~~~~~~~NlA~c  376 (388)
                      ..+.++.|..+-.++-++=+.|+|..|+.+|..|+.+|... . ..+++..+..-.-++.-|+++|-.
T Consensus         4 ~~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~   71 (77)
T d1wr0a1           4 TSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK   71 (77)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999987431 1 111223234445567778888764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.53  E-value=0.092  Score=42.40  Aligned_cols=56  Identities=4%  Similarity=-0.095  Sum_probs=48.4

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....+...++.+.+.|+|..|+..+++++..-+.+               -.+|.|+..|+.+++++.+|+
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~---------------e~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR---------------EPLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHH
Confidence            45566778999999999999999999999965543               478899999999999999986

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.11  Score=48.84  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=48.1

Q ss_pred             HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ....+-..|.-+..+++|..|+..|.+|+.+.+...               ..|+|+|.++.+.+++.+|+
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~---------------~~~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---------------QPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHcCCHHHHH
Confidence            345566789999999999999999999999776543               78999999999999999886

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.18  Score=44.27  Aligned_cols=50  Identities=6%  Similarity=-0.059  Sum_probs=28.7

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|.-+.+.|+|.+|+..|.+|+.+-+.               ...+++|++.|+.++++|.+|+
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~---------------n~~a~~~~~~~~~~~~~~~~Al  166 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAK---------------NYHAWQHRQWVIQEFKLWDNEL  166 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhc---------------chHHHHHHHHHHHHHHhhHHHH
Confidence            3445555555555555555555553222               1456677777777777777665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.44  Score=41.60  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=36.1

Q ss_pred             hhhHHhcccHHHHHHHHHHHHhhhcCCC-------------CCC-hHHHHH------HHHHHHHhhhHHHHHHHHccCch
Q 016518          325 GNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFV-DDEQKL------VKSLRVSCWLNSAACCLKLKDYQ  384 (388)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-------------~~~-~~~~~~------~~~~~~~~~~NlA~c~lKl~~~~  384 (388)
                      |.-+-+.+++++|+..|.+|+.+-+...             ..+ ++...-      +..-...++.|++.|+.++++|+
T Consensus        50 ~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~  129 (315)
T d2h6fa1          50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS  129 (315)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHH
Confidence            5555566667777777777766543210             001 111111      11122567888888999888888


Q ss_pred             hhh
Q 016518          385 GIR  387 (388)
Q Consensus       385 ~ai  387 (388)
                      +|+
T Consensus       130 eAl  132 (315)
T d2h6fa1         130 QEL  132 (315)
T ss_dssp             THH
T ss_pred             HHH
Confidence            886

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.41  E-value=0.11  Score=40.30  Aligned_cols=46  Identities=9%  Similarity=0.053  Sum_probs=35.6

Q ss_pred             hhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (388)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~  385 (388)
                      ++.+=+.+.|++|+..|++|+..-+.+               ..++.|++.|+++++++..
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~---------------~~~~~~~g~~l~~~~~~~~   49 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHS   49 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcc---------------hHHHHHHHHHHHHhhhhhh
Confidence            344556678999999999999866543               5788999999997766643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=0.44  Score=40.59  Aligned_cols=56  Identities=9%  Similarity=-0.074  Sum_probs=43.0

Q ss_pred             HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR  387 (388)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai  387 (388)
                      ..|..++..|+|..|+..|.+|+.......         .......++.++|.+|.+++++++|+
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLR---------LMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcc---------cChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            457778888888888888888887654321         12344678899999999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.60  E-value=0.46  Score=36.37  Aligned_cols=38  Identities=8%  Similarity=-0.084  Sum_probs=29.2

Q ss_pred             hcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC
Q 016518          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD  382 (388)
Q Consensus       330 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~  382 (388)
                      ..+.+++|+..|++|+++-+..               ..+|.|++.||..+++
T Consensus        53 ~~~~~~~Ai~~~~kAl~l~P~~---------------~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          53 AKQMIQEAITKFEEALLIDPKK---------------DEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcchh---------------hHHHhhHHHHHHHccc
Confidence            4566789999999999864432               4678899999988764