Citrus Sinensis ID: 016522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccEEEcccccEEccEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccEEcccccccEEEEEEEEccccEEEEccccccEEEEEcccccEEEEEcccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEEccccccEEEEccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccEEEEccccccEEEEEEcccEccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEEccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEccccEEEEcc
Coil and Loop (DISEMBL)
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVdvagysrsqgrapvsfgptdlvccrtlqghagkvysldwtsernrivsasqDGRLIVWNALTSQkthaiklpcawvmtcafsptgqsvacggldsvcsifnlnsptdkdgnlpvsrmlsghkgyvsccqyvpdedthlitssgdqtcvLWDIttglrtsvfggefqsghtaDVLSVSisgsnsrmfvsgscdstarLWDTRVASRAVRtfhghegdvntvkffpdgnrfgtgsddgtcrlfdirtgHQLQVYYQQhgeneiphvtSIAFSISGRLLfagysngdcyVWDTLLAKVVLNLGslqnshegritclglsadgsalctgswdtnlKVSLHYYIFVLMpchclknlv
Flexible Loop (DISEMBL)
msssvselkerhAAAIETVNSLRERLKQKRQQLLDVDVAGYSrsqgrapvsfgptDLVCCRTLQGHAgkvysldwtseRNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVrtfhghegdvntvkffpdgNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Low Complexity Region (SEG)
MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Disordered region (IsUnstruct)
*********************************LDVDVAGY******APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP*****NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLK***
Disordered Region (DISOPRED)
*************A**ETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Disordered Region (DISEMBL)
************AAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Disordered Region (DISPRO)
****VSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCLKNLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
P93398	377	Guanine nucleotide-bindin	N/A	no	0.896	0.923	0.896	0.0
P93397	377	Guanine nucleotide-bindin	N/A	no	0.891	0.917	0.890	0.0
Q40507	375	Guanine nucleotide-bindin	N/A	no	0.891	0.922	0.885	0.0
P93563	377	Guanine nucleotide-bindin	N/A	no	0.896	0.923	0.882	0.0
P93339	377	Guanine nucleotide-bindin	N/A	no	0.896	0.923	0.874	0.0
P49178	380	Guanine nucleotide-bindin	N/A	no	0.945	0.965	0.804	1e-173
P49177	377	Guanine nucleotide-bindin	yes	no	0.940	0.968	0.836	1e-172
Q40687	380	Guanine nucleotide-bindin	yes	no	0.945	0.965	0.815	1e-170
O14435	359	Guanine nucleotide-bindin	N/A	no	0.886	0.958	0.479	4e-92
Q6PH57	340	Guanine nucleotide-bindin	yes	no	0.863	0.985	0.456	3e-88

>sp|P93398|GBB2_TOBAC Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/366 (89%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV FGPTDLVCCR L
Sbjct: 2   SVKELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVIFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTH+ITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHVITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCDSTARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDSTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG++QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGAVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Nicotiana tabacum (taxid: 4097)

>sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/366 (89%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|Q40507|GBB3_TOBAC Guanine nucleotide-binding protein subunit beta OS=Nicotiana tabacum PE=2 SV=1

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/366 (88%), Positives = 345/366 (94%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TV+ LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVSDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSI+NLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIYNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWD RVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDNRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|P93563|GBB_SOLTU Guanine nucleotide-binding protein subunit beta OS=Solanum tuberosum GN=GB1 PE=2 SV=1

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/366 (88%), Positives = 344/366 (93%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY++ QG++PV+FGPTDLVCCR L
Sbjct: 2   SVAELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYAKRQGKSPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDS CSIFNLNSP DKDG  PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSACSIFNLNSPIDKDGIHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS SN ++FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISSSNPKLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHE DVNTVKFFPDGNRFGTGSDDG+CRLFDIRTGHQLQVY Q HG+ +IPHVTS+
Sbjct: 242 RTFHGHESDVNTVKFFPDGNRFGTGSDDGSCRLFDIRTGHQLQVYNQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLGS+QNSHEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGSVQNSHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Solanum tuberosum (taxid: 4113)

>sp|P93339|GBB_NICPL Guanine nucleotide-binding protein subunit beta OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/366 (87%), Positives = 340/366 (92%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+G S
Sbjct: 62  QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGHS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQ GHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct: 182 VLWDITTGLRTSVFGGEFQFGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTF+ HEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ HG+ +IPHVTS+
Sbjct: 242 RTFYCHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPHGDGDIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLF  YSNGDCYVWDTLLAKVVLNLG++QNSHEG I+CLGLSADG  LCTGSW
Sbjct: 302 AFSISGRLLFVRYSNGDCYVWDTLLAKVVLNLGAVQNSHEGXISCLGLSADGXXLCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P49178|GBB_MAIZE Guanine nucleotide-binding protein subunit beta OS=Zea mays GN=GB1 PE=2 SV=1

 Score =  608 bits (1567), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/369 (80%), Positives = 334/369 (90%), Gaps = 2/369 (0%)

Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+R+ LLD DVA YS+SQGR PVSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRETLLDTDVARYSKSQGRVPVSFNPTDLVCCRT 61

Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVM CAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMACAFAPNGQ 121

Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct: 122 SVACGGLDSACSIFNLNSQADRDGNMPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FGGEF SGHTADV SVSI+ SN+ MFVSGSCD+T RLWD R+ASRA
Sbjct: 182 CVLWDVTTGQRISIFGGEFPSGHTADVQSVSINSSNTNMFVSGSCDTTVRLWDIRIASRA 241

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHE DVN+VKFFPDG+RFGTGSDDGTCRLFD+RTGHQLQVY ++     NE+P V
Sbjct: 242 VRTYHGHEDDVNSVKFFPDGHRFGTGSDDGTCRLFDMRTGHQLQVYSREPDRNSNELPTV 301

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSH+GRI+CLG+S+DGSALCT
Sbjct: 302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHDGRISCLGMSSDGSALCT 361

Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Zea mays (taxid: 4577)

>sp|P49177|GBB_ARATH Guanine nucleotide-binding protein subunit beta OS=Arabidopsis thaliana GN=GB1 PE=1 SV=1

 Score =  604 bits (1557), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 307/367 (83%), Positives = 332/367 (90%), Gaps = 2/367 (0%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SVSELKERHA A ETVN+LR++L+Q+R QLLD DVA YS +QGR  VSFG TDLVCCRTL
Sbjct: 2   SVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP GQS
Sbjct: 62  QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED HLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           +LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTARLWDTR ASRAV
Sbjct: 182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQV YQ HG+ E   VTSI
Sbjct: 242 RTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQV-YQPHGDGENGPVTSI 300

Query: 304 AFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
           AFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGLSADGSALCTGS
Sbjct: 301 AFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360

Query: 363 WDTNLKV 369
           WD+NLK+
Sbjct: 361 WDSNLKI 367

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Together with GCR1 and GPA1, acts as a negative regulator of ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40687|GBB_ORYSJ Guanine nucleotide-binding protein subunit beta OS=Oryza sativa subsp. japonica GN=Os03g0669200 PE=1 SV=1

 Score =  599 bits (1545), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/369 (81%), Positives = 336/369 (91%), Gaps = 2/369 (0%)

Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YSR+QGR PVSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRQMLLDTDVERYSRTQGRTPVSFNPTDLVCCRT 61

Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVMTCAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMTCAFAPNGQ 121

Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct: 122 SVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T RLWD R+ASRA
Sbjct: 182 CVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVRLWDIRIASRA 241

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREPDRNDNELPTV 301

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct: 302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLGLSSDGSALCT 361

Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O14435|GBB_CRYPA Guanine nucleotide-binding protein subunit beta OS=Cryphonectria parasitica GN=GB-1 PE=3 SV=1

 Score =  338 bits (867), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 177/369 (47%), Positives = 248/369 (67%), Gaps = 25/369 (6%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDV---DVAGYSRSQGRAPVSFGPTDLVCC 60
           S   ++ R   A      L++R+K+K+ +L D    DVA   RS    P +     +   
Sbjct: 10  SPEAMQARIQQARREAEGLKDRIKRKKDELADTSLRDVA--HRSHEAIPRN---QLMKTK 64

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           RTL+GH  K+Y++ W+++R  +VSASQDG+LI+W+A T+ K HAI L  +WVMTCA++P+
Sbjct: 65  RTLKGHLAKIYAMHWSTDRRHLVSASQDGKLIIWDAYTTNKVHAIPLRSSWVMTCAYAPS 124

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           G  VACGGLD++CSI+NLN   ++DG   V+R LSGH GY+SCC+++ D    ++TSSGD
Sbjct: 125 GNYVACGGLDNICSIYNLNQ--NRDGPTRVARELSGHAGYLSCCRFINDRS--ILTSSGD 180

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            TC+ WDI TG +   F     + H  DV+S+S++ +N   F+SG+CD+ A+LWD R A 
Sbjct: 181 MTCMKWDIETGTKQIEF-----ADHLGDVMSISLNPTNQNTFISGACDAFAKLWDIR-AG 234

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
           +AV+TF GHE D+N ++FFPDG+ F TGSDD TCRLFDIR   +L VY     E+ +  +
Sbjct: 235 KAVQTFAGHESDINAIQFFPDGHSFVTGSDDATCRLFDIRADRELNVY---GSESILCGI 291

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TS+A S+SGRLLFAGY + +C VWD    + V   GSL   HE R++CLG+S DG +LCT
Sbjct: 292 TSVATSVSGRLLFAGYDDFECKVWDVTRGEKV---GSLV-GHENRVSCLGVSNDGISLCT 347

Query: 361 GSWDTNLKV 369
           GSWD+ LK+
Sbjct: 348 GSWDSLLKI 356

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Cryphonectria parasitica (taxid: 5116)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score =  325 bits (834), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/357 (45%), Positives = 240/357 (67%), Gaps = 22/357 (6%)

Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYA 60

Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120

Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTTF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L VY     +N I  +TS+AFS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSH---DNIICGITSVAFSKSGRLL 285

Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
359807520	377	uncharacterized protein LOC100811645 [Gl	0.886	0.912	0.912	0.0
356517084	377	PREDICTED: guanine nucleotide-binding pr	0.943	0.970	0.901	0.0
5733806	377	G protein beta subunit [Pisum sativum]	0.886	0.912	0.901	0.0
357467253	378	Guanine nucleotide-binding protein subun	0.943	0.968	0.901	0.0
224080325	377	predicted protein [Populus trichocarpa]	0.886	0.912	0.937	0.0
356538779	377	PREDICTED: guanine nucleotide-binding pr	0.943	0.970	0.898	0.0
388491282	377	unknown [Lotus japonicus]	0.881	0.907	0.896	0.0
359475308	377	PREDICTED: guanine nucleotide-binding pr	0.943	0.970	0.920	0.0
255536823	377	guanine nucleotide-binding protein beta,	0.896	0.923	0.920	0.0
22476946	377	G protein beta subunit [Pisum sativum]	0.886	0.912	0.893	0.0

>gi|359807520|ref|NP_001240891.1| uncharacterized protein LOC100811645 [Glycine max] gi|255641913|gb|ACU21225.1| unknown [Glycine max]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/366 (91%), Positives = 356/366 (97%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVNSLRERLK++R  LLD D+AGY+RSQGR+PV+FGPTDLVCCRTL
Sbjct: 2   SVTELKERHLAATETVNSLRERLKERRLSLLDTDIAGYARSQGRSPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGHAGKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHAGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCS+FNLNSPTD+DGNL VSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSLFNLNSPTDRDGNLAVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           +TFHGH+GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY++QHG+NE  HVTSI
Sbjct: 242 QTFHGHQGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHRQHGDNEAAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFS+SGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HEGRI+CLGLSADGSALCTGSW
Sbjct: 302 AFSMSGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517084|ref|XP_003527220.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like isoform 1 [Glycine max]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/366 (90%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ET+NSLRERLK++R  LLD D+AGY+RSQGRAPV+FGPTDLVCCR L
Sbjct: 2   SVTELKERHLAATETINSLRERLKERRLSLLDTDIAGYARSQGRAPVTFGPTDLVCCRAL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSP D+DGNL VS+MLSGHKGYVS CQYVPDEDTHL+T SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPADRDGNLAVSQMLSGHKGYVSSCQYVPDEDTHLVTGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTG RTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGFRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGH GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY+QQHG+NE  HVTSI
Sbjct: 242 RTFHGHRGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHQQHGDNEAAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HE RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEDRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTN+K+
Sbjct: 362 DTNIKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5733806|gb|AAD49742.1|AF170921_1 G protein beta subunit [Pisum sativum]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/366 (90%), Positives = 352/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVN+LRERLKQ+R  LLD D+AGY+RSQGRAPV+FGPTD++CCRTL
Sbjct: 2   SVAELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYARSQGRAPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS++FVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKLFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH +NE+ HVTSI
Sbjct: 242 RTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHQDNEMAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG+SADGSALCTGSW
Sbjct: 302 AFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGMSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467253|ref|XP_003603911.1| Guanine nucleotide-binding protein subunit beta-1 [Medicago truncatula] gi|355492959|gb|AES74162.1| Guanine nucleotide-binding protein subunit beta-1 [Medicago truncatula]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/367 (90%), Positives = 352/367 (95%), Gaps = 1/367 (0%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVN+LRERLKQ+R  LLD D+AGY++SQGR PV+FGPTD++CCRTL
Sbjct: 2   SVTELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYAKSQGRTPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS+MFVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKMFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTS 302
           RTFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH G+NE+ HVTS
Sbjct: 242 RTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHSGDNEMAHVTS 301

Query: 303 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
           IAFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS
Sbjct: 302 IAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 361

Query: 363 WDTNLKV 369
           WDTNLK+
Sbjct: 362 WDTNLKI 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080325|ref|XP_002306098.1| predicted protein [Populus trichocarpa] gi|222849062|gb|EEE86609.1| predicted protein [Populus trichocarpa]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/366 (93%), Positives = 352/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SVSELKERH AA ETVNSLRERLKQKR  LLD D+A Y+R+Q R+PVSFGPTDLVCCRTL
Sbjct: 2   SVSELKERHVAATETVNSLRERLKQKRLLLLDTDMARYARAQERSPVSFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTG+RTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGIRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY QHG+ EIPHVTSI
Sbjct: 242 RTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYHQHGDTEIPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLA+ VLNLGSLQNSHEGRITCLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAEAVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538779|ref|XP_003537878.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Glycine max]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/366 (89%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH+AA +TVN+LR RLKQKR  LLD D++GY+RSQGR PV+FGPTDLVCCRTL
Sbjct: 2   SVTELKERHSAATDTVNNLRHRLKQKRLSLLDTDISGYARSQGRTPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+++IVSASQDGRLIVWNALT QK HAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGL+TSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH +NEIP VTSI
Sbjct: 242 RTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPPVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFS SGRLLFAGY+NGDCYVWDTLLAKVVLN+GSLQ+SHE RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSASGRLLFAGYTNGDCYVWDTLLAKVVLNIGSLQDSHEDRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491282|gb|AFK33707.1| unknown [Lotus japonicus]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/366 (89%), Positives = 349/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH  A ETVN+LRERLKQKR  LLD D++GY++SQGRAPV+FGPTD++CCRTL
Sbjct: 2   SVTELKERHLTAAETVNNLRERLKQKRLSLLDTDISGYAKSQGRAPVTFGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVY+LDWTSE+NRIVS SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYALDWTSEKNRIVSTSQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNS TD+DGNL VSRMLSGHKGYVS CQYVPDEDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSSTDRDGNLNVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDGTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           +TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ QVYYQQH +NEIPHVTS+
Sbjct: 242 QTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQRQVYYQQHSDNEIPHVTSM 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AF ISGRLLFAGY+NG CYVWDTLLAKVVLNLGSLQNSH+GRI+CLGLSADGSALCTGSW
Sbjct: 302 AFPISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNSHDGRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475308|ref|XP_003631647.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Vitis vinifera] gi|297741450|emb|CBI32581.3| unnamed protein product [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/366 (92%), Positives = 355/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELKERH AA ETVNSLRERLKQKR  LLD DVAGY+R+QG++PV+FGPTDLVCCRTL
Sbjct: 2   SVAELKERHMAATETVNSLRERLKQKRLLLLDTDVAGYARAQGKSPVTFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT+E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct: 62  QGHTGKVYSLDWTTEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTDKDGNL +S+MLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDKDGNLAMSKMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD+TARLWDTR ASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDATARLWDTRAASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVNTV+FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ+HG+NE PHVTSI
Sbjct: 242 RTFHGHEGDVNTVRFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQEHGDNEAPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH+ RI+CLGLSADGSALCTGSW
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHDSRISCLGLSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536823|ref|XP_002509478.1| guanine nucleotide-binding protein beta, putative [Ricinus communis] gi|223549377|gb|EEF50865.1| guanine nucleotide-binding protein beta, putative [Ricinus communis]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/366 (92%), Positives = 355/366 (96%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+ELK RH AA ETVN+LRERLKQKR  LLD DVAGY+R+QG+ PVSFGPTDLVCCRTL
Sbjct: 2   SVAELKARHVAATETVNTLRERLKQKRLLLLDTDVAGYARAQGKTPVSFGPTDLVCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWT+E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTAEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPT+KDGNLPVS+MLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTEKDGNLPVSKMLSGHKGYVSACQYVPDEDTHLITSSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDV+ VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH +NE+PHVTSI
Sbjct: 242 RTFHGHEGDVSAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHNDNEVPHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLLFAGYSNGDCYVWDTLLA+VVL+LGSLQNSHEGRI+CLGLSADGSALCTGS+
Sbjct: 302 AFSISGRLLFAGYSNGDCYVWDTLLAQVVLDLGSLQNSHEGRISCLGLSADGSALCTGSY 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22476946|gb|AAM97354.1| G protein beta subunit [Pisum sativum]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/366 (89%), Positives = 350/366 (95%)

Query: 4   SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
           SV+++KERH AA ETVN+LRERLKQ+R  LLD D+AGY+RSQGRAPV+ GPTD++CCRTL
Sbjct: 2   SVADVKERHIAATETVNNLRERLKQRRLSLLDTDIAGYARSQGRAPVTLGPTDILCCRTL 61

Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           QGH GKVYSLDWTSE+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS
Sbjct: 62  QGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 121

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           VACGGLDSVCSIFNLNSPTD+DGNL VSRMLSGHKGYVS CQYVP EDTHLIT SGDQTC
Sbjct: 122 VACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTC 181

Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
           VLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNS++FVSGSCD+TARLWDTRVASRAV
Sbjct: 182 VLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKLFVSGSCDATARLWDTRVASRAV 241

Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
           RTFHGHEGDVN VKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVY QQH +NE+ HVTSI
Sbjct: 242 RTFHGHEGDVNPVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHQDNEMAHVTSI 301

Query: 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
           AFSISGRLL AGY+NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG+SADGSALCTGSW
Sbjct: 302 AFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGMSADGSALCTGSW 361

Query: 364 DTNLKV 369
           DTNLK+
Sbjct: 362 DTNLKI 367

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
UNIPROTKB|P93397	377	P93397 "Guanine nucleotide-bin	0.943	0.970	0.890	5.4e-182
UNIPROTKB|Q40687	380	LOC_Os03g46650 "Guanine nucleo	0.945	0.965	0.815	2.8e-169
TAIR|locus:2139489	377	AGB1 "AT4G34460" [Arabidopsis	0.940	0.968	0.836	7.4e-169
UNIPROTKB|F1NLV4	403	GNB1 "Uncharacterized protein"	0.762	0.734	0.477	1.6e-77
ZFIN|ZDB-GENE-030131-823	340	gnb1a "guanine nucleotide bind	0.762	0.870	0.484	2.1e-77
ZFIN|ZDB-GENE-040426-2855	340	gnb1b "guanine nucleotide bind	0.762	0.870	0.484	2.7e-77
WB|WBGene00001679	340	gpb-1 [Caenorhabditis elegans	0.752	0.858	0.475	3.1e-76
UNIPROTKB|P62871	340	GNB1 "Guanine nucleotide-bindi	0.762	0.870	0.468	3.1e-76
UNIPROTKB|P62872	340	GNB1 "Guanine nucleotide-bindi	0.762	0.870	0.468	3.1e-76
UNIPROTKB|P62873	340	GNB1 "Guanine nucleotide-bindi	0.762	0.870	0.468	3.1e-76

UNIPROTKB|P93397 P93397 "Guanine nucleotide-binding protein subunit beta-1" [Nicotiana tabacum (taxid:4097)]

 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 326/366 (89%), Positives = 345/366 (94%)

Query:     4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
             SV+ELKERH AA +TVN LRE+LKQKR QLLD DV+GY+RSQG+ PV+FGPTDLVCCR L
Sbjct:     2 SVTELKERHMAATQTVNDLREKLKQKRLQLLDTDVSGYARSQGKTPVTFGPTDLVCCRIL 61

Query:    64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
             QGH GKVYSLDWT E+NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP+GQS
Sbjct:    62 QGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQS 121

Query:   124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
             VACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDTHLITSSGDQTC
Sbjct:   122 VACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTC 181

Query:   184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
             VLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TARLWDTRVASRA 
Sbjct:   182 VLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTARLWDTRVASRAQ 241

Query:   244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
             RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ HG+ +IPHVTS+
Sbjct:   242 RTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPHGDGDIPHVTSM 301

Query:   304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363
             AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLSADGSALCTGSW
Sbjct:   302 AFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSW 361

Query:   364 DTNLKV 369
             DTNLK+
Sbjct:   362 DTNLKI 367

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40687 LOC_Os03g46650 "Guanine nucleotide-binding protein subunit beta" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 301/369 (81%), Positives = 336/369 (91%)

Query:     3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
             +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YSR+QGR PVSF PTDLVCCRT
Sbjct:     2 ASVAELKEKHAAATASVNSLRERLRQRRQMLLDTDVERYSRTQGRTPVSFNPTDLVCCRT 61

Query:    63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
             LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVMTCAF+P GQ
Sbjct:    62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMTCAFAPNGQ 121

Query:   123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
             SVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T LITSSGDQT
Sbjct:   122 SVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQETRLITSSGDQT 181

Query:   183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
             CVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T RLWD R+ASRA
Sbjct:   182 CVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVRLWDIRIASRA 241

Query:   243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
             VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct:   242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREPDRNDNELPTV 301

Query:   301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
             TSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct:   302 TSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLGLSSDGSALCT 361

Query:   361 GSWDTNLKV 369
             GSWD NLK+
Sbjct:   362 GSWDKNLKI 370

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEP;ISS

TAIR|locus:2139489 AGB1 "AT4G34460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 307/367 (83%), Positives = 332/367 (90%)

Query:     4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTL 63
             SVSELKERHA A ETVN+LR++L+Q+R QLLD DVA YS +QGR  VSFG TDLVCCRTL
Sbjct:     2 SVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTL 61

Query:    64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
             QGH GKVYSLDWT ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP GQS
Sbjct:    62 QGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQS 121

Query:   124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
             VACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED HLITSSGDQTC
Sbjct:   122 VACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTC 181

Query:   184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
             +LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTARLWDTR ASRAV
Sbjct:   182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAV 241

Query:   244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303
             RTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQVY Q HG+ E   VTSI
Sbjct:   242 RTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY-QPHGDGENGPVTSI 300

Query:   304 AFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
             AFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGLSADGSALCTGS
Sbjct:   301 AFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360

Query:   363 WDTNLKV 369
             WD+NLK+
Sbjct:   361 WDSNLKI 367

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IEP;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA;IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=RCA;IMP

GO:0048364 "root development" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0009991 "response to extracellular stimulus" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

UNIPROTKB|F1NLV4 GNB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 150/314 (47%), Positives = 215/314 (68%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLAQITANIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----TGHTGDVMSLSLA-PDARCFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L VY   H +N I  +TS+AFS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMVY--SH-DNIICGITSVAFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWDTL A
Sbjct:   289 YDDFNCNVWDTLKA 302

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

ZFIN|ZDB-GENE-030131-823 gnb1a "guanine nucleotide binding protein (G protein), beta polypeptide 1a" [Danio rerio (taxid:7955)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 152/314 (48%), Positives = 217/314 (69%)

Query:    19 VNSLRERLKQKRQQLLDVD--VAGYSRSQGRAPVS-FGPTDLVCCRTLQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D     A  + SQ  A +   G   +   RTL+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L VY   H +N I  +TS+AFS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMVY--SH-DNIICGITSVAFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWD L A
Sbjct:   289 YDDFNCNVWDALKA 302

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2855 gnb1b "guanine nucleotide binding protein (G protein), beta polypeptide 1b" [Danio rerio (taxid:7955)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 152/314 (48%), Positives = 218/314 (69%)

Query:    19 VNSLRERLKQKRQQLLDVD--VAGYSRSQGRAPVS-FGPTDLVCCRTLQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D     A  + SQ  A +   G   +   RTL+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             ++L +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YSLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDIR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L VY   H +N I  +TS+AFS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMVY--SH-DNIICGITSVAFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWDTL A
Sbjct:   289 YDDFNCNVWDTLKA 302

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00001679 gpb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 148/311 (47%), Positives = 212/311 (68%)

Query:    17 ETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWT 76
             +    L+ ++++ R+   D  +A  + +    P+  G   +   RTL+GH  K+Y++ W 
Sbjct:     9 QEAEQLKSQIREARKSANDTTLA--TVASNLEPI--GRIQMRTRRTLRGHLAKIYAMHWA 64

Query:    77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136
             S+   +VSASQDG+LIVW++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+
Sbjct:    65 SDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIY 124

Query:   137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196
             +L +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD TC LWDI TG + + 
Sbjct:   125 SLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIVTSSGDMTCALWDIETGQQCTA 179

Query:   197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256
             F     +GHT DV+S+S+S  + R F+SG+CD++A+LWD R      +TF GHE D+N V
Sbjct:   180 F-----TGHTGDVMSLSLS-PDFRTFISGACDASAKLWDIR-DGMCKQTFPGHESDINAV 232

Query:   257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
              FFP GN F TGSDD TCRLFDIR   +L +Y   H +N I  +TS+AFS SGRLLFAGY
Sbjct:   233 AFFPSGNAFATGSDDATCRLFDIRADQELAMY--SH-DNIICGITSVAFSKSGRLLFAGY 289

Query:   317 SNGDCYVWDTL 327
              + +C VWD++
Sbjct:   290 DDFNCNVWDSM 300

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0040013 "negative regulation of locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

UNIPROTKB|P62871 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 147/314 (46%), Positives = 214/314 (68%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L  Y   H +N I  +TS++FS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH-DNIICGITSVSFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWD L A
Sbjct:   289 YDDFNCNVWDALKA 302

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=IDA

GO:0071870 "cellular response to catecholamine stimulus" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62872 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Canis lupus familiaris (taxid:9615)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 147/314 (46%), Positives = 214/314 (68%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L  Y   H +N I  +TS++FS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH-DNIICGITSVSFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWD L A
Sbjct:   289 YDDFNCNVWDALKA 302

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62873 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 147/314 (46%), Positives = 214/314 (68%)

Query:    19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
             ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct:     4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query:    76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
              ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct:    64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query:   136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
             +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct:   124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178

Query:   196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
              F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct:   179 TF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query:   256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
             + FFP+GN F TGSDD TCRLFD+R   +L  Y   H +N I  +TS++FS SGRLL AG
Sbjct:   232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH-DNIICGITSVSFSKSGRLLLAG 288

Query:   316 YSNGDCYVWDTLLA 329
             Y + +C VWD L A
Sbjct:   289 YDDFNCNVWDALKA 302

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

GO:0051020 "GTPase binding" evidence=IPI

GO:0007165 "signal transduction" evidence=TAS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0003924 "GTPase activity" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=ISS

GO:0071870 "cellular response to catecholamine stimulus" evidence=ISS

GO:0005622 "intracellular" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93339	GBB_NICPL	No assigned EC number	0.8743	0.8969	0.9230	N/A	no
Q40507	GBB3_TOBAC	No assigned EC number	0.8852	0.8917	0.9226	N/A	no
P16520	GBB3_HUMAN	No assigned EC number	0.4522	0.8505	0.9705	yes	no
P17343	GBB1_CAEEL	No assigned EC number	0.4645	0.8505	0.9705	yes	no
P93563	GBB_SOLTU	No assigned EC number	0.8825	0.8969	0.9230	N/A	no
Q40687	GBB_ORYSJ	No assigned EC number	0.8157	0.9458	0.9657	yes	no
Q6PH57	GBB1_DANRE	No assigned EC number	0.4565	0.8634	0.9852	yes	no
P79147	GBB3_CANFA	No assigned EC number	0.4463	0.8556	0.9764	yes	no
Q61011	GBB3_MOUSE	No assigned EC number	0.4578	0.8505	0.9705	yes	no
P49177	GBB_ARATH	No assigned EC number	0.8365	0.9407	0.9681	yes	no
P49178	GBB_MAIZE	No assigned EC number	0.8048	0.9458	0.9657	N/A	no
P52287	GBB3_RAT	No assigned EC number	0.4494	0.8505	0.9705	yes	no
P93397	GBB1_TOBAC	No assigned EC number	0.8907	0.8917	0.9177	N/A	no
P26308	GBB1_DROME	No assigned EC number	0.4537	0.8634	0.9852	yes	no
P93398	GBB2_TOBAC	No assigned EC number	0.8961	0.8969	0.9230	N/A	no
P36408	GBB_DICDI	No assigned EC number	0.4505	0.8840	0.9884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036395001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (388 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032290001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (370 aa)				•	•		•		0.851
	GSVIVG00020099001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (105 aa)					•		•		0.708
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.491
	GSVIVG00028641001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (398 aa)			•				•		0.484
	GSVIVG00001683001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (422 aa)			•						0.477
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)			•						0.475
	GSVIVG00001478001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (379 aa)			•						0.475
	GSVIVG00018072001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa)			•						0.465
	GSVIVG00010426001	SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa)			•						0.461
	GSVIVG00023743001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa)			•						0.433

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-08
smart00320	40	smart00320, WD40, WD40 repeats	8e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  232 bits (595), Expect = 1e-74
 Identities = 102/313 (32%), Positives = 147/313 (46%), Gaps = 28/313 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH G V  + ++ +   + + S DG + VW+  T +    +K     V   A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
             G  +A G  D    +++L +           R L+GH  YVS   + P  D  +++SS
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSP--DGRILSSS 111

Query: 179 G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDT 236
             D+T  +WD+ TG   +        GHT  V SV+ S      FV+ S  D T +LWD 
Sbjct: 112 SRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSPDG--TFVASSSQDGTIKLWDL 164

Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296
           R   + V T  GH G+VN+V F PDG +  + S DGT +L+D+ TG  L       G   
Sbjct: 165 R-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---RGHEN 220

Query: 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356
              V S+AFS  G LL +G  +G   VWD    + V  L      H   +T L  S DG 
Sbjct: 221 G--VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGK 274

Query: 357 ALCTGSWDTNLKV 369
            L +GS D  +++
Sbjct: 275 RLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  155 bits (393), Expect = 2e-44
 Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 20/267 (7%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH G V  +  +++   + S S D  + +W+  T +    +    ++V + AFS
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P G+ ++    D    ++++ +             L GH  +V+   + PD  T + +SS
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCL-------TTLRGHTDWVNSVAFSPD-GTFVASSS 154

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D T  LWD+ TG   +       +GHT +V SV+ S    +  +S S D T +LWD   
Sbjct: 155 QDGTIKLWDLRTGKCVATL-----TGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLS- 207

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
             + + T  GHE  VN+V F PDG    +GS+DGT R++D+RTG  +Q     H      
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTN---- 262

Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD 325
            VTS+A+S  G+ L +G ++G   +WD
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  136 bits (342), Expect = 6e-36
 Identities = 98/313 (31%), Positives = 142/313 (45%), Gaps = 23/313 (7%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAF 117
              L+GH   + S+ ++ +   ++S S DG + +W+    +K       L  + V   A 
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 118 -SPTGQSVA--CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            SP G S+      LD    +++L++P        + R L GH   V+   + PD     
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPG------KLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
             SS D T  LWD+ TG   S       +GHT  V S++ S     +  SGS D T RLW
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
           D         T  GH   V +  F PDG+   +GS DGT RL+D+R+   L      H  
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354
                V S+AFS  G+LL +G S+G   +WD    K++ +L      HEG ++ L  S D
Sbjct: 286 ----SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK--GHEGPVSSLSFSPD 339

Query: 355 GSALCTGSWDTNL 367
           GS L +G  D   
Sbjct: 340 GSLLVSGGSDDGT 352

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  132 bits (333), Expect = 1e-34
 Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 27/319 (8%)

Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVM 113
           T     RTL+GH+  V SL ++ +   + S S  DG + +W+  T +    +      V 
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202

Query: 114 TCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
           + AFSP G   +A G  D    +++L++         +   LSGH   V    + PD   
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            L + S D T  LWD+ +            SGH++ VLSV+ S  + ++  SGS D T R
Sbjct: 256 -LASGSSDGTIRLWDLRSSSSLLRTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVR 309

Query: 233 LWDTR-VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQ 290
           LWD       +  T  GHEG V+++ F PDG+   +G SDDGT RL+D+RTG  L+    
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369

Query: 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350
                    V S++FS  GR++ +G ++G   +WD     ++ NL    + H  R+T L 
Sbjct: 370 HSN------VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL----DGHTSRVTSLD 419

Query: 351 LSADGSALCTGSWDTNLKV 369
            S DG +L +GS D  +++
Sbjct: 420 FSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  123 bits (309), Expect = 3e-31
 Identities = 88/268 (32%), Positives = 125/268 (46%), Gaps = 18/268 (6%)

Query: 59  CCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
              TL GH   V SL ++ +    I S S DG + +W+  T +   +     +  +  +F
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177
           SP G  +A G  D    +++L S      +  + R LSGH   V    + PD    L + 
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRS------SSSLLRTLSGHSSSVLSVAFSPDGKL-LASG 302

Query: 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237
           S D T  LWD+ TG   S    +   GH   V S+S S   S +   GS D T RLWD R
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLK---GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297
              + ++T  GH  +V +V F PDG    +GS DGT RL+D+ TG  L+           
Sbjct: 360 -TGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--- 414

Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVWD 325
             VTS+ FS  G+ L +G S+    +WD
Sbjct: 415 --VTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  118 bits (295), Expect = 2e-29
 Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 27/310 (8%)

Query: 66  HAGKVYSLDWTS-ERNRIVSA--SQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTG 121
           H   V  L  +S + N I+ A  S DG + +W+  T  +    ++     V + AFSP G
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 122 Q-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           +   +   LD    +++L +             L+GH   VS   + PD    + + S D
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL-------STLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LWD++TG           SGH+  V  VS    +  +  SGS D T RLWD R +S
Sbjct: 221 GTIRLWDLSTGKLLR----STLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             +RT  GH   V +V F PDG    +GS DGT RL+D+ TG  L     +  E     V
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP---V 331

Query: 301 TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359
           +S++FS  G LL +G S +G   +WD    K +  L          +  +  S DG  + 
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSFSPDGRVVS 386

Query: 360 TGSWDTNLKV 369
           +GS D  +++
Sbjct: 387 SGSTDGTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.4 bits (163), Expect = 3e-12
 Identities = 63/227 (27%), Positives = 91/227 (40%), Gaps = 55/227 (24%)

Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
           +     RTL GH+  V S+ ++ +   + S S DG + +W+  T +   ++         
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------- 323

Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
                                                  L GH+G VS   + PD    +
Sbjct: 324 ---------------------------------------LKGHEGPVSSLSFSPDGSLLV 344

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
              S D T  LWD+ TG       G       ++VLSVS S  + R+  SGS D T RLW
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGH------SNVLSVSFS-PDGRVVSSGSTDGTVRLW 397

Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
           D    S  +R   GH   V ++ F PDG    +GS D T RL+D++T
Sbjct: 398 DLSTGSL-LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
            L+   TL+GH G V SL ++ + + +VS  S DG + +W+  T +    ++   + V++
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLS 375

Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            +FSP G+ V+ G  D    +++L++ +       + R L GH   V+   + PD    L
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGS-------LLRNLDGHTSRVTSLDFSPDGK-SL 427

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
            + S D T  LWD+ T L++  F  + +   +       
Sbjct: 428 ASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
           +RT  GH G V +V F PDGN   +GSDDGT R++D
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
           ++T  GH G V +V F PDG    +GSDDGT +L+D
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
            +       +       L+     S           +        +   +     GHE  
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDS 67

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           + ++ F PDG    +GS DGT +L+D+  G +L       G ++         S  G  +
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 313 FAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKV 369
               S+ D    +WD  L+     + +L+  H   +T L  S DG  L +GS  D  +K+
Sbjct: 126 LLASSSLDGTVKLWD--LSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
            +TL+GH G V S+ ++ +   + S S DG + +W+
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
             RTL+GH G V S+ ++ + N + S S DG + VW+
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
            C +TL GH   V SL W+ +  R+ S S DG + +W+
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
            GHT  V SV+ S  +  +  SGS D T R+WD
Sbjct: 8   KGHTGPVTSVAFS-PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGG--EFQSGHTADV 209
           +L G +G +    + P +   L T+S D T + W I   GL  ++       Q GHT  V
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKV 128

Query: 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
             VS   S   +  S   D    +WD     +AV     H   + ++++  DG+   T S
Sbjct: 129 GIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187

Query: 270 DDGTCRLFDIRTG 282
            D    + D R G
Sbjct: 188 KDKKLNIIDPRDG 200

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
           R L GH G V+   + PD    L + S D T  +WD
Sbjct: 5   RTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
            GHT  V SV+ S  + +   SGS D T +LWD
Sbjct: 9   KGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
           + L GH G V+   + PD   +L + S D T  LWD
Sbjct: 6   KTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0639	705	consensus Transducin-like enhancer of split protei	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG2055	514	consensus WD40 repeat protein [General function pr	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG4328	498	consensus WD40 protein [Function unknown]	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG1188	376	consensus WD40 repeat protein [General function pr	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG4227	609	consensus WD40 repeat protein [General function pr	99.94
KOG1310	758	consensus WD40 repeat protein [General function pr	99.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.94
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1334	559	consensus WD40 repeat protein [General function pr	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.89
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
KOG0649	325	consensus WD40 repeat protein [General function pr	99.89
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1963	792	consensus WD40 repeat protein [General function pr	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG2139	445	consensus WD40 repeat protein [General function pr	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG2321	703	consensus WD40 repeat protein [General function pr	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
PRK03629	429	tolB translocation protein TolB; Provisional	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
PRK04922	433	tolB translocation protein TolB; Provisional	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.77
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG2315	566	consensus Predicted translation initiation factor	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.71
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.64
KOG2314	698	consensus Translation initiation factor 3, subunit	99.63
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
PRK01029	428	tolB translocation protein TolB; Provisional	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.58
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.57
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.56
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.53
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.52
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.5
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.45
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.44
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.39
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.38
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.38
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.36
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.3
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.28
KOG2695	425	consensus WD40 repeat protein [General function pr	99.27
PRK04043	419	tolB translocation protein TolB; Provisional	99.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.26
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.22
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.21
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.19
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.13
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.11
KOG2695	425	consensus WD40 repeat protein [General function pr	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.04
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	99.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.98
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.98
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.92
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.92
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.91
KOG3621	726	consensus WD40 repeat-containing protein [General	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.82
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.76
PRK02888	635	nitrous-oxide reductase; Validated	98.76
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.7
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.67
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.67
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.64
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.63
PRK02888	635	nitrous-oxide reductase; Validated	98.61
COG3391	381	Uncharacterized conserved protein [Function unknow	98.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.56
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.38
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.37
COG3391	381	Uncharacterized conserved protein [Function unknow	98.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.32
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
KOG2444	238	consensus WD40 repeat protein [General function pr	98.22
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.13
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.13
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.07
KOG2395	644	consensus Protein involved in vacuole import and d	98.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.01
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.93
PHA02713	557	hypothetical protein; Provisional	97.9
PRK13616	591	lipoprotein LpqB; Provisional	97.9
PHA02713	557	hypothetical protein; Provisional	97.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.87
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.83
KOG2444	238	consensus WD40 repeat protein [General function pr	97.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.72
PRK13616	591	lipoprotein LpqB; Provisional	97.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.65
KOG2395	644	consensus Protein involved in vacuole import and d	97.64
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.63
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.6
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.51
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.5
COG5276	370	Uncharacterized conserved protein [Function unknow	97.45
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.36
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.32
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.29
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.24
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.22
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.18
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.15
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.13
PHA03098	534	kelch-like protein; Provisional	97.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.09
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.01
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.97
PHA03098	534	kelch-like protein; Provisional	96.93
PHA02790	480	Kelch-like protein; Provisional	96.89
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.77
PRK10115	686	protease 2; Provisional	96.73
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.64
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.59
PHA02790	480	Kelch-like protein; Provisional	96.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.46
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.44
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.39
KOG2247	615	consensus WD40 repeat-containing protein [General	96.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.28
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.22
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.15
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.14
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.02
COG5167	776	VID27 Protein involved in vacuole import and degra	95.98
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.95
COG5276	370	Uncharacterized conserved protein [Function unknow	95.91
PRK13684	334	Ycf48-like protein; Provisional	95.82
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.74
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.73
COG5167	776	VID27 Protein involved in vacuole import and degra	95.55
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.37
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.24
PRK05560	805	DNA gyrase subunit A; Validated	95.24
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.15
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.13
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.98
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.98
KOG2247	615	consensus WD40 repeat-containing protein [General	94.79
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.77
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.75
PRK10115	686	protease 2; Provisional	94.64
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.61
PRK13684	334	Ycf48-like protein; Provisional	94.58
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.47
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.46
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.39
COG4590	733	ABC-type uncharacterized transport system, permeas	94.37
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.3
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	94.08
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.96
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.87
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.68
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.55
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.45
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.4
COG4590	733	ABC-type uncharacterized transport system, permeas	93.29
PLN02153	341	epithiospecifier protein	93.28
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.19
PRK13979	957	DNA topoisomerase IV subunit A; Provisional	92.66
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.56
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.51
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	92.42
PLN02193	470	nitrile-specifier protein	92.42
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.4
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.37
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.27
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.16
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	92.01
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.91
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.86
PRK00736	68	hypothetical protein; Provisional	91.61
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.42
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	91.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.11
PRK00295	68	hypothetical protein; Provisional	90.57
PLN02153	341	epithiospecifier protein	90.55
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.49
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.31
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.27
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	90.13
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.08
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.07
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.01
TIGR01062	735	parC_Gneg DNA topoisomerase IV, A subunit, proteob	89.99
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.91
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	89.88
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	89.71
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.55

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.9e-63  Score=374.27  Aligned_cols=342  Identities=51%  Similarity=0.957  Sum_probs=319.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC
Q 016522           10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG   89 (388)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg   89 (388)
                      ++.+++++|+++|+.++++.|..+.+.++...+......+.    ..++..++|+||.+.|.++.|++|+++|++++.||
T Consensus         2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~----i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG   77 (343)
T KOG0286|consen    2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGR----IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG   77 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccccee----eeeeeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence            57888999999999999999999999999888877666665    56778899999999999999999999999999999


Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (388)
                      .+.|||..+..+++.++.+..+|..++|+|.|+++|+|+.|+...||++.... ..+..+..+.+.+|.+.+.|+.|.++
T Consensus        78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-~~g~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-AEGNVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-ccccceeeeeecCccceeEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999643 23556678889999999999999985


Q ss_pred             CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc
Q 016522          170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (388)
Q Consensus       170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (388)
                        ..|++++.|.+..+||+++++....|     .+|.+.|.++.++|.+++.|++|+.|+..++||+|.+ ..++.+.+|
T Consensus       157 --~~ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~gh  228 (343)
T KOG0286|consen  157 --NHILTGSGDMTCALWDIETGQQTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGH  228 (343)
T ss_pred             --CceEecCCCceEEEEEcccceEEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeeccc
Confidence              46999999999999999999999999     8999999999999999999999999999999999998 999999999


Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      ++.|+++.|.|+|.-+++|+.|++.++||++..+.+..+..   .....+|++++||..|++|++|..|..+.+||.-.+
T Consensus       229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            99999999999999999999999999999999999888864   445567999999999999999999999999999999


Q ss_pred             eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +.+..+    .+|+..|+++..+|||.-++||+.|..++||.
T Consensus       306 e~vg~L----~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 ERVGVL----AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceEEEe----eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999    89999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-57  Score=355.87  Aligned_cols=294  Identities=29%  Similarity=0.500  Sum_probs=265.7

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      .+|...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|..+|.|++|+|||+.||+|+.||.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeC----CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |..++..      ....+.+|+..|++++|.|-    ...++++++.||.|+|||+..+.++..+     .+|..+|+|+
T Consensus       185 dpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----sgHT~~VTCv  253 (480)
T KOG0271|consen  185 DPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----SGHTASVTCV  253 (480)
T ss_pred             cCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----ccCccceEEE
Confidence            9988663      56788999999999999873    2357999999999999999999999988     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCC-----------------------------------------------------
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVA-----------------------------------------------------  239 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------------------------------------  239 (388)
                      .|-  +..++++|+.|++|++|+...+                                                     
T Consensus       254 rwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  254 RWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            996  4567888888888888875431                                                     


Q ss_pred             -------------------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          240 -------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       240 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                                               .+++..+.+|..-|+.+.|+||++++|+++.|..|++||.++|+.+..+..+   
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH---  408 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH---  408 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc---
Confidence                                     2344455678888999999999999999999999999999999999888554   


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                        ...|..++|+.|.++|++|+.|.++++||+++.+....+    .+|.+.|.++.|+|||..+++|+.|..+++|.+
T Consensus       409 --v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~~  480 (480)
T KOG0271|consen  409 --VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVDWSPDGQRVASGGKDKVLRLWRH  480 (480)
T ss_pred             --cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----CCCCceEEEEEecCCCceeecCCCceEEEeecC
Confidence              445999999999999999999999999999999999998    799999999999999999999999999999963

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-54  Score=344.59  Aligned_cols=336  Identities=24%  Similarity=0.376  Sum_probs=286.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC
Q 016522           10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG   89 (388)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg   89 (388)
                      .+..-+.-.+++.+.+++..+.+.+..........+...  .+ ..+..+...-.|-+.+|..+.|+++++.|+|||.+|
T Consensus       121 AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~--k~-~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG  197 (459)
T KOG0272|consen  121 ARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEAL--KH-LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG  197 (459)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHH--HH-hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence            334444445555566666666554443331111111000  00 012223333346678999999999999999999999


Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      .+++|+..+...+.++.+|...|.++.|+|.  +..+++++.||++++|++++..       ....+.+|...|..++|+
T Consensus       198 ~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-------~l~~l~gH~~RVs~VafH  270 (459)
T KOG0272|consen  198 LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-------PLQDLEGHLARVSRVAFH  270 (459)
T ss_pred             ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-------chhhhhcchhhheeeeec
Confidence            9999999999999999999999999999996  6789999999999999998754       677889999999999999


Q ss_pred             eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH  247 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  247 (388)
                      |+| ++|++++.|.+-++||++++..+...     .+|...|.+++|.| ++.++++|+.|..-+|||++++ +.+..+.
T Consensus       271 PsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-----EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtg-r~im~L~  342 (459)
T KOG0272|consen  271 PSG-KFLGTASFDSTWRLWDLETKSELLLQ-----EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTG-RCIMFLA  342 (459)
T ss_pred             CCC-ceeeecccccchhhcccccchhhHhh-----cccccccceeEecC-CCceeeccCccchhheeecccC-cEEEEec
Confidence            997 78999999999999999999877766     89999999999999 9999999999999999999999 8999999


Q ss_pred             cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEc
Q 016522          248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  326 (388)
                      +|..+|.+++|+|+|..||+|+.|++++|||++....+..+..     |..-|+.+.|+| .|.+|++++.|+++++|..
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-----H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-----HSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-----ccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            9999999999999999999999999999999999888777744     444599999999 6789999999999999999


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .++.++..+    .+|++.|.++++++|++.+++++.|.++++|.+
T Consensus       418 ~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  418 RTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             CCcccchhh----cCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            999999999    899999999999999999999999999999964

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-47  Score=287.59  Aligned_cols=299  Identities=27%  Similarity=0.376  Sum_probs=258.0

Q ss_pred             CCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECC-----CCCeeeEeeeCCccEEEEEECCCCCEEEEee
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL-----TSQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (388)
                      ..+....+|++|++.|+.++..+. .+.+++++.|.++.+|++.     .|..++.+.+|...|..++.+++|++.++++
T Consensus         3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            345677899999999999999886 4688999999999999874     4677889999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .|+.+++||+.+++       ..+.+.+|...|.+++|++++ ..+++|+.|.+|++|++..........    ..+..-
T Consensus        83 wD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~W  150 (315)
T KOG0279|consen   83 WDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREW  150 (315)
T ss_pred             ccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEec----CCCcCc
Confidence            99999999999865       788999999999999999996 679999999999999987655444431    223789


Q ss_pred             eEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          209 VLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       209 i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      |.|+.|+|.. ..++++++.|++|++||+++. +....+.+|.+.++.++++|||.+.++|+.||.+.+||++.++.+..
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            9999999954 789999999999999999988 78889999999999999999999999999999999999999998766


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-----CCCeeEEEECCCCCeEEEcc
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~  362 (388)
                      +..      ...|.+++|+|+...|+.+.. ..|+|||+.++..+..+..-..+.     .....+++|++||..|+.|-
T Consensus       230 l~a------~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  230 LEA------FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             ccC------CCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence            533      345999999999888777754 469999999998888775322222     33457889999999999999


Q ss_pred             CCCeEEEeccc
Q 016522          363 WDTNLKVSLHY  373 (388)
Q Consensus       363 ~dg~v~iw~~~  373 (388)
                      .|+.|++|...
T Consensus       303 td~~irv~qv~  313 (315)
T KOG0279|consen  303 TDNVIRVWQVA  313 (315)
T ss_pred             cCCcEEEEEee
Confidence            99999999753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-47  Score=298.54  Aligned_cols=307  Identities=25%  Similarity=0.392  Sum_probs=280.5

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ........|..|.|.+ ...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++|...+..++|+..
T Consensus        83 ~pt~~~~~~~~wipRp-~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~  161 (406)
T KOG0295|consen   83 DPTGSKRTPALWIPRP-NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS  161 (406)
T ss_pred             CCCcCccChhhcCCCC-CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC
Confidence            3344556777787764 455677889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      |+++++++.|-.+.+||.+..      ....+.+.+|...|.++.|.|.| .++++++.|.+|+.|++.++.++..+   
T Consensus       162 Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~---  231 (406)
T KOG0295|consen  162 GKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTF---  231 (406)
T ss_pred             ccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEec---
Confidence            999999999999999999862      34677788999999999999997 68999999999999999999999999   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC---------------CCEE
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---------------GNRF  265 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l  265 (388)
                        .+|..-+..+..+. ++.++++++.|.+|++|-+.+. .+...+..|+.+|.+++|-|.               ++++
T Consensus       232 --~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l  307 (406)
T KOG0295|consen  232 --PGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL  307 (406)
T ss_pred             --cCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEE
Confidence              79999999999997 9999999999999999999887 778889999999999999873               3589


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCC
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  345 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (388)
                      .+++.|++|++||+.++.++.++..     +...|..++|+|.|+||+++.+|+++++||++++++...+    ..|..-
T Consensus       308 ~s~SrDktIk~wdv~tg~cL~tL~g-----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hf  378 (406)
T KOG0295|consen  308 GSGSRDKTIKIWDVSTGMCLFTLVG-----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHF  378 (406)
T ss_pred             EeecccceEEEEeccCCeEEEEEec-----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc----CCCcce
Confidence            9999999999999999999999855     4457999999999999999999999999999999999999    799999


Q ss_pred             eeEEEECCCCCeEEEccCCCeEEEec
Q 016522          346 ITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       346 v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      |++++|+.+..+++||+-|..+++|.
T Consensus       379 vt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-48  Score=310.00  Aligned_cols=263  Identities=24%  Similarity=0.365  Sum_probs=245.9

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCC--CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      .+-.+.+..|+.++.....+|.||.+.|.++.|+|.  +..||||+.||++++|++.+..++..+.+|...|..++|+|+
T Consensus       193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs  272 (459)
T KOG0272|consen  193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS  272 (459)
T ss_pred             eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence            345677888999999999999999999999999996  568999999999999999999999999999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      |++|++++.|.+-++||++++.       ......+|...|.+++|.++| .++++|+.|..-+|||++++.++..+   
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~-------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L---  341 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKS-------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFL---  341 (459)
T ss_pred             Cceeeecccccchhhcccccch-------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEe---
Confidence            9999999999999999999866       455668999999999999998 78999999999999999999999999   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (388)
                        .+|..+|.++.|+| ++..+++|+.|++++|||++.. ..+..+.+|.+-|+.+.|+| .|.+|++++.|++++||..
T Consensus       342 --~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  342 --AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             --cccccceeeEeECC-CceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence              89999999999999 9999999999999999999987 77899999999999999999 8899999999999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      ++..+++.+..+.     ..|.++.+++++.++++++.|.++++|.
T Consensus       418 ~~~~~~ksLaGHe-----~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  418 RTWSPLKSLAGHE-----GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCcccchhhcCCc-----cceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999886544     4599999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-44  Score=268.78  Aligned_cols=282  Identities=21%  Similarity=0.289  Sum_probs=241.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      -+|++++.|.+|++|...+|.+..+++...+.|..+...|+++.|++++. -.|++||+++...     .+...+.+|..
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----~Pv~t~e~h~k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----NPVATFEGHTK   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----CceeEEeccCC
Confidence            37899999999999999999999999999999999999999999999875 4799999998552     26788999999


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      .|+.+.|..+| +.+++|+.||+++|||++...+.+.+      .+..+|+++..+| +..-|++|..+|.|++||+...
T Consensus        85 NVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   85 NVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             ceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence            99999999997 78999999999999999997666665      6779999999999 7788999999999999999976


Q ss_pred             CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec-cCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      .-....+......|.++...|||.+++.+...|..++|++-.......+... .-..+...+..+.+||++++|++++.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            3222333344568999999999999999999999999999775433332221 123455679999999999999999999


Q ss_pred             CcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522          319 GDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLM  379 (388)
Q Consensus       319 g~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~  379 (388)
                      .+++||+..+. +....+    .+|..-+.+.+||.||+||+||+.|+.+++|........+
T Consensus       237 ktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             ceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            99999999887 444555    7999999999999999999999999999999987655443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-46  Score=294.31  Aligned_cols=269  Identities=26%  Similarity=0.418  Sum_probs=238.0

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-eEeeeCCccEEEEEECC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~  119 (388)
                      .+++.+...+.|++.+-.+.++.++|..-|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|..+|++++|.|
T Consensus       131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence            45566788899999999999999999999999999999999999999999999999988765 57899999999999976


Q ss_pred             -----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522          120 -----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       120 -----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                           ..++|++++.||.|+|||+..+.       ....+.+|+.+|+|+.|-.+  .++++|+.|++|++|+...|...
T Consensus       211 ~hl~p~~r~las~skDg~vrIWd~~~~~-------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~  281 (480)
T KOG0271|consen  211 LHLVPPCRRLASSSKDGSVRIWDTKLGT-------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC  281 (480)
T ss_pred             cccCCCccceecccCCCCEEEEEccCce-------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHH
Confidence                 56899999999999999998866       78889999999999999864  58999999999999997664322


Q ss_pred             EEeec--------------------------------------------------------------------------c
Q 016522          195 SVFGG--------------------------------------------------------------------------E  200 (388)
Q Consensus       195 ~~~~~--------------------------------------------------------------------------~  200 (388)
                      ..+..                                                                          .
T Consensus       282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~  361 (480)
T KOG0271|consen  282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT  361 (480)
T ss_pred             HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence            21100                                                                          0


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                      ...+|..-|+.+.|+| ++.++++++.|..|++||.+++ +.+..+.+|-.+|..++|+.|.++|++|+.|.++++||++
T Consensus       362 rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  362 RMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             hhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence            1257888899999999 9999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +.+....+.     +|...|.++.|+|||..+++|+.|..+++|.
T Consensus       440 tkKl~~DLp-----Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  440 TKKLKQDLP-----GHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeeecccCC-----CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            887776663     3445699999999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8e-45  Score=277.74  Aligned_cols=292  Identities=21%  Similarity=0.346  Sum_probs=259.5

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      .+.-.+.||++.|+.+.|+|+|.+||||+.|..|.+|++ ...+....+++|.+.|..+.|.++++.+++++.|.+++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            345578899999999999999999999999999999995 4456677888999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      |.++++       ..+..++|..-|+.+.-+.-|..++.+++.||++++||+++...+.++      ...-.++++.|..
T Consensus       118 D~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d  184 (338)
T KOG0265|consen  118 DAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKD  184 (338)
T ss_pred             ecccce-------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecc
Confidence            999977       678889999999999977778888999999999999999998888776      4567899999997


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce----eeEeeecc
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQH  292 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~  292 (388)
                       .+..+.+|+-|+.|++||++.. .....+.+|..+|+.+..+|+|.++.+-+.|.++++||++-..+    +..+.. +
T Consensus       185 -~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~  261 (338)
T KOG0265|consen  185 -TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-H  261 (338)
T ss_pred             -cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-c
Confidence             7788899999999999999988 88999999999999999999999999999999999999986433    333322 2


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      ..+.......++|+|+++.+.+|+.|..+++||......+..+    .+|.+.|++++|+|...+|.+++.|.+|.+
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            2223334677899999999999999999999999998999988    899999999999999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.7e-46  Score=294.45  Aligned_cols=284  Identities=29%  Similarity=0.462  Sum_probs=254.6

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      -+.+|..|.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|+++|.++++|+.+|.|++|+.....   
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---  171 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---  171 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence            34589999999999999999999999999986666666678899999999999999999999999999999987633   


Q ss_pred             CCCceeEEeccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          146 GNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       146 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                           .+.+..| ...|.+++|+|+ +..+++++.||+|+|||....+....+     .+|.-.|.+++|+| ...++++
T Consensus       172 -----Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP-~kgLias  239 (464)
T KOG0284|consen  172 -----VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHP-TKGLIAS  239 (464)
T ss_pred             -----hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCC-ccceeEE
Confidence                 3444444 489999999996 578999999999999999998887777     79999999999999 7789999


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                      |+.|..|++||.+++ .++.++..|...|..+.|+|++++|+++|.|..+++||+++.+.+..+..+..     .++++.
T Consensus       240 gskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-----dv~~~~  313 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-----DVTSLT  313 (464)
T ss_pred             ccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-----hheeec
Confidence            999999999999998 89999999999999999999999999999999999999998888888765444     499999


Q ss_pred             ecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          305 FSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       305 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      |+|-.. ++.+|+.||.|..|.+...+++..+.   .+|...|++++|+|=|.+|++|+.|.++++|...
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccccccceeeccCCCceEEEeccccccccCCC---cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            999655 88889999999999998777666665   7899999999999999999999999999999853

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-44  Score=282.69  Aligned_cols=296  Identities=26%  Similarity=0.355  Sum_probs=264.9

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      +.+..+.+.||.+-|.|+++.|...+|+||+.|++++|||+.+++...++.+|-..|..+++++...|+++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      ||++.++       +++.+.+|-..|.|++.+|.- ..|++|+.|..+++||+++...+..+     .+|..+|.++.+.
T Consensus       220 wDLe~nk-------vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l-----~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  220 WDLEYNK-------VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL-----SGHTNPVASVMCQ  286 (460)
T ss_pred             Eechhhh-------hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe-----cCCCCcceeEEee
Confidence            9999866       788899999999999999985 67999999999999999999999999     8999999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                      | -...+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+..+..     
T Consensus       287 ~-~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg-----  358 (460)
T KOG0285|consen  287 P-TDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSG-----  358 (460)
T ss_pred             c-CCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccc-----
Confidence            8 4556889999999999999998 7788888999999999999999999999887 599999999888777543     


Q ss_pred             CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC----CcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +...+.+++.+.|| ++++|+.+|.+.+||.+++...+.......    ..+..|.+.+|...|..|++|..|.+|++|.
T Consensus       359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            33458899887665 888999999999999998876655532211    2346789999999999999999999999998


Q ss_pred             cc
Q 016522          372 HY  373 (388)
Q Consensus       372 ~~  373 (388)
                      ..
T Consensus       438 eD  439 (460)
T KOG0285|consen  438 ED  439 (460)
T ss_pred             cc
Confidence            54

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.1e-43  Score=264.69  Aligned_cols=294  Identities=21%  Similarity=0.332  Sum_probs=246.0

Q ss_pred             ceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC---eeeEe-eeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ---KTHAI-KLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      +..++.+++|.+.|..++|+|. |..|||++.|+.|++|+...+.   +...+ .+|...|++++|+|.|++|++++.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567899999999999999998 8899999999999999987533   22222 35888999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCCccC
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~~~~  208 (388)
                      ++.||.-..     .++.....+.+|...|.|++|+++| ++|++++.|..|-||.+..+   .+...+     ..|...
T Consensus        84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL-----~~HtqD  152 (312)
T KOG0645|consen   84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVL-----QEHTQD  152 (312)
T ss_pred             eEEEeecCC-----CceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeee-----cccccc
Confidence            999999775     4567899999999999999999997 79999999999999999855   344555     799999


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCC--CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (388)
                      |..+.|+| ...+|++++.|.+|++|+-..  ...+++++.+|.+.|.+++|+|.|..|++++.|++++||-..+.-.  
T Consensus       153 VK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~--  229 (312)
T KOG0645|consen  153 VKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS--  229 (312)
T ss_pred             ccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence            99999999 778999999999999997652  2367899999999999999999999999999999999998763211  


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc--eEE-eeccCCCCCcCCCeeEEEECCC-CCeEEEcc
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVV-LNLGSLQNSHEGRITCLGLSAD-GSALCTGS  362 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~  362 (388)
                             ..+...+..++|.  ...|++++.|+.|++|.-...  .+. ..+......|...|++++|+|. ..+|++|+
T Consensus       230 -------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  230 -------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             -------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence                   1233358889998  558999999999999976542  111 1111233679999999999994 77899999


Q ss_pred             CCCeEEEeccc
Q 016522          363 WDTNLKVSLHY  373 (388)
Q Consensus       363 ~dg~v~iw~~~  373 (388)
                      .||.|++|...
T Consensus       301 DDG~v~~W~l~  311 (312)
T KOG0645|consen  301 DDGIVNFWELE  311 (312)
T ss_pred             CCceEEEEEec
Confidence            99999999753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.1e-42  Score=281.20  Aligned_cols=326  Identities=19%  Similarity=0.293  Sum_probs=269.4

Q ss_pred             CcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee---eCCccEE
Q 016522           37 DVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---LPCAWVM  113 (388)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~  113 (388)
                      +.+....+.+..+..|.-++++...+++.|..-|.|+.|+|||.++||++.||+|.+||-.+++.+..+.   .|.+.|.
T Consensus       160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf  239 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF  239 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence            4455667788888899999999999999999999999999999999999999999999999999999998   8999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCCCC------------------------------------CCCCceeEEeccc
Q 016522          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK------------------------------------DGNLPVSRMLSGH  157 (388)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~------------------------------------~~~~~~~~~~~~~  157 (388)
                      ++.|+||+..+++++.|.+++|||+.+....                                    .....+...+.+|
T Consensus       240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH  319 (603)
T KOG0318|consen  240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH  319 (603)
T ss_pred             EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence            9999999999999999999999999875410                                    1123355678899


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      ...|+++..++++ .+|++|+.||.|.-||..++..-....    ..|...|.+++.+.  ...+++.+.|.++++.++.
T Consensus       320 nK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g----~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  320 NKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG----KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             ccceeEEEEcCCC-CEEEeeccCceEEEEecCCcccccccc----ccccceEEEEeecC--CCcEEEEecCCeEEEEecc
Confidence            9999999999997 789999999999999999987665543    57899999998874  3456778888899999763


Q ss_pred             CCC-----------cc-------------------eEEEecc--------cCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          238 VAS-----------RA-------------------VRTFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       238 ~~~-----------~~-------------------~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                      ...           ++                   +..++.+        .-...+++++|+++.+++|+.||.|++|.+
T Consensus       393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl  472 (603)
T KOG0318|consen  393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL  472 (603)
T ss_pred             cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence            220           00                   1111111        123568999999999999999999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      ...........   ..+..+|++++|+||+.|||+|...+.+.+||..+.+....-.   .-|...|.+++|+|+..++|
T Consensus       473 ~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w---~FHtakI~~~aWsP~n~~vA  546 (603)
T KOG0318|consen  473 SGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW---AFHTAKINCVAWSPNNKLVA  546 (603)
T ss_pred             cCCcccceeee---ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee---eeeeeeEEEEEeCCCceEEE
Confidence            87664333222   3345579999999999999999999999999999887743221   45999999999999999999


Q ss_pred             EccCCCeEEEecccee
Q 016522          360 TGSWDTNLKVSLHYYI  375 (388)
Q Consensus       360 s~~~dg~v~iw~~~~~  375 (388)
                      ||+.|-.|.||...-.
T Consensus       547 TGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  547 TGSLDTNVIIYSVKKP  562 (603)
T ss_pred             eccccceEEEEEccCh
Confidence            9999999999997643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-41  Score=286.80  Aligned_cols=288  Identities=35%  Similarity=0.553  Sum_probs=257.0

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      ++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            45788999999999999999999999999999999999988888888899999999999999999999999999999998


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      ...       ....+..|...+.++.|++++ .++++++.||.|.+||+.+++....+     ..|...+.++.++| ++
T Consensus        82 ~~~-------~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~  147 (289)
T cd00200          82 TGE-------CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSP-DG  147 (289)
T ss_pred             ccc-------ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEe-----ccCCCcEEEEEEcC-cC
Confidence            743       455667888899999999984 67788888999999999988887777     57888999999999 67


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      .++++++.+|.|++||++.. +....+..|...+.++.|+|+++.+++++.|+.|++||++.++....+..     +...
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~  221 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----HENG  221 (289)
T ss_pred             CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----cCCc
Confidence            88888888999999999876 67778888988999999999999999999999999999998777766533     2235


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +.++.|+|++.++++++.+|.|++||+.+++....+    ..|...|.+++|++++.+|++++.||.+++|.
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999889888888999999999998888888    68888999999999999999999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.8e-45  Score=295.12  Aligned_cols=297  Identities=21%  Similarity=0.376  Sum_probs=256.7

Q ss_pred             ceeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (388)
                      -+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+++|..|++++.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            356789999999999999999 888999999999999999976 899999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      +||++++.       +...+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++.+..+     ..|-+.|..+.|
T Consensus       284 lwDtETG~-------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F  350 (503)
T KOG0282|consen  284 LWDTETGQ-------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF  350 (503)
T ss_pred             eeccccce-------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence            99999976       444433 24567899999998899999999999999999999988888     788999999999


Q ss_pred             eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      -+ ++..+++.+.|+.+++|+.+.+-........+.....++..+|+++++++-+.|+.|.+|.+...-.........+.
T Consensus       351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh  429 (503)
T KOG0282|consen  351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH  429 (503)
T ss_pred             cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence            98 88999999999999999999773322333334456778999999999999999999999997654333332222233


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEec
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~  371 (388)
                      ...+.-..+.|||||.+|++|+.||.+.+||.++.+.+..+    ++|.+++..+.|+| ....+|+++.||.|++|.
T Consensus       430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            33445688999999999999999999999999999999998    89999999999999 456899999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-42  Score=262.38  Aligned_cols=303  Identities=18%  Similarity=0.343  Sum_probs=261.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------------------------CcccccccCCCCCcc
Q 016522            3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDV-------------------------------DVAGYSRSQGRAPVS   51 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~   51 (388)
                      ..+|+|.+|..+++.++++.++++....-.....                               .....+.++++....
T Consensus         2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv   81 (343)
T KOG0286|consen    2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV   81 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEE
Confidence            3578888888888888888777766542111111                               011267788899999


Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEEEEECCCCCEEE
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      |+..+....+.++--..-|..++|+|.|+++|+|+-|+...||++.+.      .....+.+|.+.+.|+.|-+ ...|+
T Consensus        82 WDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~il  160 (343)
T KOG0286|consen   82 WDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHIL  160 (343)
T ss_pred             EEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceE
Confidence            999999999999988999999999999999999999999999999755      34566889999999999987 55789


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +++.|.++.+||++++.       ....+.+|.+.|.++.+.|...+.+++|+.|+..++||++.+...+.|     .+|
T Consensus       161 T~SGD~TCalWDie~g~-------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-----~gh  228 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQ-------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-----EGH  228 (343)
T ss_pred             ecCCCceEEEEEcccce-------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-----ccc
Confidence            99999999999999977       788899999999999999955688999999999999999999999999     899


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ...|++++|.| ++.-|++|+.|++.++||+|.. +.+..+..  -..+|++++|+..|++|++|..|..+.+||.-.++
T Consensus       229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ccccceEEEcc-CCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence            99999999999 8999999999999999999987 55655552  33579999999999999999999999999999998


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      ....+..+     ...|+++..+|||.-+++|+.|..++||.
T Consensus       307 ~vg~L~GH-----eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  307 RVGVLAGH-----ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEeecc-----CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            88888643     44699999999999999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-42  Score=279.79  Aligned_cols=286  Identities=24%  Similarity=0.411  Sum_probs=248.9

Q ss_pred             eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCC--C--eeeEee----------eCCccEEEEEECCCCCEEE
Q 016522           61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTS--Q--KTHAIK----------LPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~--~--~~~~~~----------~~~~~v~~~~~~~~~~~l~  125 (388)
                      +.+. |+.+|.+.+|+|-.. .+++|+.|-..++|++...  .  ....++          ..+..|++++|+.+|..|+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            4445 999999999999665 8999999999999998641  1  111111          1235699999999999999


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +|+.||.+++|+....        ....+..|+++|.++.|+..| .+|++++.||++.+||..++.....+     .-|
T Consensus       252 tG~~~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f-----~~~  317 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGN--------LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQF-----EFH  317 (524)
T ss_pred             EeecCcEEEEEecCch--------hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEee-----eec
Confidence            9999999999998863        467888999999999999997 78999999999999999999998888     567


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      ..+...+.|-  +..-|++++.||.|+++.+... .++.++.+|.++|.++.|+|.+.+|++++.|++++||+.......
T Consensus       318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             cCCccceEEe--cCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            7776788887  5567899999999999999877 899999999999999999999999999999999999998887777


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCC---------CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ..+..+.     ..|..+.|+|.|         ..+++++.|++|++||+..+.++..+    ..|..+|.+++|+|+|+
T Consensus       395 ~~l~~Hs-----kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~pVysvafS~~g~  465 (524)
T KOG0273|consen  395 HDLQAHS-----KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQEPVYSVAFSPNGR  465 (524)
T ss_pred             hhhhhhc-----cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCCceEEEEecCCCc
Confidence            6664433     348999999865         47899999999999999999999999    79999999999999999


Q ss_pred             eEEEccCCCeEEEeccc
Q 016522          357 ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~  373 (388)
                      ++|+|+.||.|.+|...
T Consensus       466 ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  466 YLASGSLDGCVHIWSTK  482 (524)
T ss_pred             EEEecCCCCeeEecccc
Confidence            99999999999999854

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.9e-42  Score=277.64  Aligned_cols=278  Identities=23%  Similarity=0.372  Sum_probs=253.9

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ..|++++|+.+|+.||+|+.||.+++|+ ..|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++.     
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence            5799999999999999999999999999 5688889999999999999999999999999999999999998765     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                        ....+.-|..+-.++.|-.+  ..+++++.||.|+++.+....+..++     .+|.++|.++.|+| .+.+|++++.
T Consensus       310 --~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~-tg~LLaS~Sd  379 (524)
T KOG0273|consen  310 --VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNP-TGSLLASCSD  379 (524)
T ss_pred             --EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECC-CCceEEEecC
Confidence              66777888888788999875  45999999999999999999999998     78999999999999 8899999999


Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEccCC---------CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                      |++++||..... .....+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+..+     ..
T Consensus       380 D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-----~~  453 (524)
T KOG0273|consen  380 DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-----QE  453 (524)
T ss_pred             CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-----CC
Confidence            999999998877 7888999999999999999954         57999999999999999999999998554     44


Q ss_pred             CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +|.+++|+|+|+++|+|+.||.|.+|+.++++.+..+     ...+.|..++|+.+|.+|..+-.||.+++-+.
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            5999999999999999999999999999999999987     34567999999999999999999999988653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-41  Score=253.98  Aligned_cols=290  Identities=19%  Similarity=0.279  Sum_probs=251.6

Q ss_pred             ccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEE
Q 016522           39 AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCA  116 (388)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~  116 (388)
                      -..+.+-+..++.|...+..|.++++...+.|+.+...|+++.||+|+.- .|++||+.+++  ++.++.+|...|+++.
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEE
Confidence            34556677889999999999999999888899999999999999998864 79999998765  5889999999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      |..+|+.+++|++||+++|||++...        ......|..+|+++..+|+. ..|++|..+|.|++||+.+..+...
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccc
Confidence            99999999999999999999999833        44455678999999999985 6799999999999999999877666


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-----CcceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      +.    ......|.++...| ++.+++.+...|..++|++-..     -.++..++.|++.+..+.+||++++|++++.|
T Consensus       162 li----Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  162 LI----PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cC----CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            53    34557899999999 8999999999999999998653     24667789999999999999999999999999


Q ss_pred             CcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          272 GTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       272 g~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      .+++||+..+. +....+     ..+...+...+||.||+||++|+.|+.+++||+..++.+...    .+|.....|++
T Consensus       237 ktv~iwn~~~~~kle~~l-----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~  307 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVL-----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVA  307 (311)
T ss_pred             ceEEEEecCCceeeEEEe-----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEE
Confidence            99999999887 222222     334467999999999999999999999999999999999988    78888888887


Q ss_pred             EC
Q 016522          351 LS  352 (388)
Q Consensus       351 ~~  352 (388)
                      ..
T Consensus       308 ln  309 (311)
T KOG0315|consen  308 LN  309 (311)
T ss_pred             ee
Confidence            64

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=299.01  Aligned_cols=296  Identities=26%  Similarity=0.487  Sum_probs=262.7

Q ss_pred             eeccccc-cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           60 CRTLQGH-AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        60 ~~~l~~h-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+  ....+..|...|.+++|+|+++++++++.|+++++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            5566555 7899999999999999999999999999997777  677778899999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      |+....      ...+.+.+|...|++++|+|++ +++++|+.|++|++||++++++...+     ..|...|++++|++
T Consensus       231 d~~~~~------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  231 DLKDDG------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLAFSP  298 (456)
T ss_pred             eccCCC------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEEECC
Confidence            994421      2778899999999999999998 89999999999999999999999999     89999999999998


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCc-ceEEEecccCC--eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                       ++++|++++.||.|++||+.++.. +...+..+...  ++++.|+|++.++++++.|+.+++||+..+.....+..+..
T Consensus       299 -d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~  377 (456)
T KOG0266|consen  299 -DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN  377 (456)
T ss_pred             -CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence             889999999999999999998832 35666666555  99999999999999999999999999999988888766543


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-CCCeeEEEECCCCCeEEEcc--CCCeEEEe
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGS--WDTNLKVS  370 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~v~iw  370 (388)
                      .  ...+.+...++.+.++++|+.|+.|++||+.++..+..+    .+| ...+..+++++...++++++  .|+.+++|
T Consensus       378 ~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  378 L--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             c--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence            3  124556666889999999999999999999998888888    788 89999999999999999998  79999999


Q ss_pred             ccce
Q 016522          371 LHYY  374 (388)
Q Consensus       371 ~~~~  374 (388)
                      .+.+
T Consensus       452 ~~~~  455 (456)
T KOG0266|consen  452 KYDF  455 (456)
T ss_pred             cCCC
Confidence            8764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-41  Score=287.65  Aligned_cols=314  Identities=21%  Similarity=0.299  Sum_probs=269.0

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC-CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      +.-..|..+...+++.|.--..+|..++|+..|++||.|+.. |.+-||++.+...+...++|...+++++++|||++++
T Consensus       287 G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia  366 (893)
T KOG0291|consen  287 GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA  366 (893)
T ss_pred             CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence            344456778888999999888999999999999999998765 8999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +|+.||.|+|||..++-       +..++..|+..|+.+.|+..+ +.+++++-||+|+.||+......+++.    .+.
T Consensus       367 TG~eDgKVKvWn~~Sgf-------C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft----~P~  434 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSGF-------CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFT----SPE  434 (893)
T ss_pred             eccCCCcEEEEeccCce-------EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeec----CCC
Confidence            99999999999999866       788999999999999999987 789999999999999999998888884    345


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCC-ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      +....|++..| .+.++++|+.|. .|.+|++.++ +.+..+.+|++||.+++|+|++..|++++.|.+|++||+-....
T Consensus       435 p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~  512 (893)
T KOG0291|consen  435 PIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG  512 (893)
T ss_pred             ceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence            56678899998 778888888775 7999999999 89999999999999999999999999999999999999876533


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC----------------CCcCCCeeE
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ----------------NSHEGRITC  348 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~~~~v~~  348 (388)
                      .........     .+..++|.|+|+.|++++.||.|.+||...+.....+....                .......+.
T Consensus       513 ~vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt  587 (893)
T KOG0291|consen  513 TVETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT  587 (893)
T ss_pred             eeeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence            322222222     38999999999999999999999999998776664442110                123467899


Q ss_pred             EEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHYYIFVLM  379 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~  379 (388)
                      +++++||..|++||....|++|+......+.
T Consensus       588 i~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  588 ICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             EEEcCCCCEEEecCCcccEEEEECchhheee
Confidence            9999999999999999999999976544333

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=257.92  Aligned_cols=271  Identities=24%  Similarity=0.389  Sum_probs=229.2

Q ss_pred             cccCCCCCcccCC-----CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE
Q 016522           42 SRSQGRAPVSFGP-----TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (388)
Q Consensus        42 ~~~~~~~~~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~  116 (388)
                      +.+++.....|+.     ....+++.|+||+..|..++.++||++.++++.|+++++||+.+++..+.+.+|...|.+++
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva  112 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA  112 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence            4445555555644     34567899999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEE
Q 016522          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS  195 (388)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~  195 (388)
                      |++|.+.+++|+.|.+|++|++-...      .....-..+.+.|.|+.|+|+. +.++++++.|++|++||+++.+...
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecccE------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence            99999999999999999999987632      1222222337899999999984 5689999999999999999999888


Q ss_pred             EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                      .+     .+|...++.++++| ++.+.++|+.||.+.+||++.+ +.+..+. |...|.+++|+|+.-.|+.+. +..|+
T Consensus       187 ~~-----~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIk  257 (315)
T KOG0279|consen  187 TF-----IGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-KNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIK  257 (315)
T ss_pred             cc-----ccccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-ceeEecc-CCCeEeeEEecCCceeEeecc-CCceE
Confidence            88     79999999999999 9999999999999999999988 5555554 788999999999977666665 45699


Q ss_pred             EEECCCCceeeEeeeccCC----CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          276 LFDIRTGHQLQVYYQQHGE----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      |||+.++..+..+......    .......+++|+++|..|++|..|+.|++|.+.
T Consensus       258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999998877766443221    123457889999999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.2e-42  Score=293.51  Aligned_cols=282  Identities=30%  Similarity=0.500  Sum_probs=243.6

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      .+..++.--...++|..|++|+..||.|-.|..|++|.+... .+..++....          ...+=+.+.|-.+.+.|
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~----------l~~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASD----------LSNIDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhh----------hccccccccchhhhhcc
Confidence            456666655668999999999999999999999999998654 3333332211          11122233344455555


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      .....       ....+.+|.++|..+.|+|+. ++|++++.|++|++|.+.+......+     .+|..+|..+.|+| 
T Consensus       438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P-  503 (707)
T KOG0263|consen  438 DDSSG-------TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP-  503 (707)
T ss_pred             ccCCc-------eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-
Confidence            55433       566799999999999999995 78999999999999999999999998     89999999999998 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      .+.+||+++.|++-++|..... .+.+.+.+|.+.|.|+.|+|+..|+++||.|.++++||+.+|..+..+..     |.
T Consensus       504 ~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----H~  577 (707)
T KOG0263|consen  504 RGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----HK  577 (707)
T ss_pred             CceEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----CC
Confidence            8999999999999999999887 89999999999999999999999999999999999999999999999854     55


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .+|++++|+|+|++|++|+.||.|.+||+.+++.+..+    .+|.+.|.++.|+.||..||+||.|..|++|+...
T Consensus       578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            56999999999999999999999999999999999999    89999999999999999999999999999998643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-42  Score=271.92  Aligned_cols=297  Identities=18%  Similarity=0.324  Sum_probs=246.5

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      +.+..+.|..|++.|.-+.||++|++||+++.|.+..+|++....   ..+++.+|..+|..+.|+||.++|++++.+..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            346677899999999999999999999999999999999876544   47788899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +.+||..++..      ......++...+.+++|.||| ..+++|+.|+.+..||+..... ..+.    ......|.++
T Consensus       293 ~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-~~W~----gvr~~~v~dl  360 (519)
T KOG0293|consen  293 LSLWDVDTGDL------RHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-GNWE----GVRDPKVHDL  360 (519)
T ss_pred             eeeccCCcchh------hhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-hccc----ccccceeEEE
Confidence            99999998762      111223356889999999998 5699999999999999976543 2221    2334668999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      +..+ +++++++.+.|..|++|+.... .... +.....+|++++.+.+++++++.-.+..+++||+...+.+..+..+.
T Consensus       361 ait~-Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  361 AITY-DGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEcC-CCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            9998 8888888899999999998754 2222 33345789999999999999999999999999999877776665533


Q ss_pred             CCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEe
Q 016522          293 GENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVS  370 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw  370 (388)
                         ....+..-||--. ..++++|++|+.|+||+..+++++..+    .+|...|++++|+| +..++|+||.||+|+||
T Consensus       438 ---q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  438 ---QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             ---ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence               2234666677654 469999999999999999999999999    89999999999999 66789999999999999


Q ss_pred             ccce
Q 016522          371 LHYY  374 (388)
Q Consensus       371 ~~~~  374 (388)
                      -+..
T Consensus       511 g~~~  514 (519)
T KOG0293|consen  511 GPSD  514 (519)
T ss_pred             cCCc
Confidence            8764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-41  Score=287.91  Aligned_cols=314  Identities=20%  Similarity=0.294  Sum_probs=276.5

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeC-CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWT-SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      +.++....++..+++..+.+-|..+.|.+|+|- |+.++||.++..+.+++|+..+..+. .+.+|...|.++....+|.
T Consensus       300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~  378 (775)
T KOG0319|consen  300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGD  378 (775)
T ss_pred             EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCc
Confidence            344555567778999999999999999999985 57789999999999999998777665 7899999999999777889


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee----
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG----  198 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----  198 (388)
                      +|++|+.|.++++|.++.+.   ....+.....+|.+.|.+++++..+..+|++++.|+++++|++...+......    
T Consensus       379 llat~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             EEEEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            99999999999999995433   23335566789999999999998888999999999999999998732221111    


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      ......|...|++++++| +..++++|+.|.+.++|++... .....+.+|...|.++.|+|..+.++++|.|++|+||.
T Consensus       456 ~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hHHHHhhcccccceEecC-CCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence            112357999999999999 8899999999999999999976 88899999999999999999999999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  358 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  358 (388)
                      +.+..+++++..     |...|..+.|-.+|+.|++++.||-|++|+++++++..++    ..|++.|++++.++.+.++
T Consensus       534 is~fSClkT~eG-----H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  534 ISTFSCLKTFEG-----HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             eccceeeeeecC-----ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCcccee
Confidence            999999999954     4445999999999999999999999999999999999999    8999999999999999999


Q ss_pred             EEccCCCeEEEecc
Q 016522          359 CTGSWDTNLKVSLH  372 (388)
Q Consensus       359 ~s~~~dg~v~iw~~  372 (388)
                      +||+.||.|.+|..
T Consensus       605 ~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  605 VTGGGDGRIIFWKD  618 (775)
T ss_pred             EecCCCeEEEEeec
Confidence            99999999999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-41  Score=248.88  Aligned_cols=288  Identities=21%  Similarity=0.306  Sum_probs=251.2

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      +..+.|..|.++|.++.|+-+|+|.++++.|.+|++|+...+..++++.+|...|..++.+.|+..|++|+.|..+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC--ceEEEeecccccCCccCeEEEEee
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      +++++       ..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||.++.  ++++.+     ......|.++...
T Consensus        88 V~TGk-------v~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~  154 (307)
T KOG0316|consen   88 VNTGK-------VDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVA  154 (307)
T ss_pred             cccCe-------eeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEec
Confidence            99987       789999999999999999875 78999999999999999876  455555     5677889999885


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                         +..+++|+.||+++.||++.+ ......  ...+|++++|+++++..+.++.|+++++.|-.+|+.+..+..+... 
T Consensus       155 ---~heIvaGS~DGtvRtydiR~G-~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-  227 (307)
T KOG0316|consen  155 ---EHEIVAGSVDGTVRTYDIRKG-TLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-  227 (307)
T ss_pred             ---ccEEEeeccCCcEEEEEeecc-eeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-
Confidence               367999999999999999987 443333  3458999999999999999999999999999999998888664432 


Q ss_pred             CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCC-eeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                        ..-...+++....++++|++||.|++||+.....+..+    ..+... |++++++|.-..++++. ++.+..|..
T Consensus       228 --eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  228 --EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             --eeeeeeeecccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccceeEec-CCceeceee
Confidence              23456678888889999999999999999999999888    566666 89999999877777776 455566653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-40  Score=260.52  Aligned_cols=289  Identities=18%  Similarity=0.272  Sum_probs=248.8

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      ..+.+|..|+++|.+++.+|+.++++||+.|..-.+|++.+++....+.+|...|+++.|+.+|.+||+|+.+|.|.||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ..++.       ....+...-..+.-+.|+|.+ .+|+.|+.||.+-+|.+.++.....+     .+|..++++=.|.| 
T Consensus       135 ~stg~-------~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~-----~Gh~~~ct~G~f~p-  200 (399)
T KOG0296|consen  135 VSTGG-------EQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM-----SGHNSPCTCGEFIP-  200 (399)
T ss_pred             cccCc-------eEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe-----cCCCCCcccccccC-
Confidence            99866       344444556778889999975 78999999999999999998777777     79999999999999 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEec-------------------------------------------------
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------------------------------------------  248 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------------------------  248 (388)
                      +++.++++..||+|++|++.++ .++..+..                                                 
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~  279 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK  279 (399)
T ss_pred             CCceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence            7999999999999999999887 44443320                                                 


Q ss_pred             --ccCCeeEEEE---ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          249 --HEGDVNTVKF---FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       249 --~~~~i~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                        +...+.++.+   +..-.+.|+|+-||+|.|||+...+......      +..+|+.+.|-+ ..+|++++.+|.|+.
T Consensus       280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~------he~~V~~l~w~~-t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE------HEDGVTKLKWLN-TDYLLTACANGKVRQ  352 (399)
T ss_pred             ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc------CCCceEEEEEcC-cchheeeccCceEEe
Confidence              1111222222   2234678899999999999998876655543      233599999998 789999999999999


Q ss_pred             EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ||.++|.....+    .+|...|.+++++|+.++++|+|.|++.+||..
T Consensus       353 wDaRtG~l~~~y----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  353 WDARTGQLKFTY----TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             eeccccceEEEE----ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999999    899999999999999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.8e-40  Score=278.73  Aligned_cols=304  Identities=22%  Similarity=0.396  Sum_probs=253.9

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      .++...+++.||.+.|+++.|+.|.++|++|+.|.++++|++...+.  ...+.+|...|..+-|..+...+++.+.||.
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~  212 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA  212 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence            34567889999999999999999999999999999999999987666  6677899999999999999999999999999


Q ss_pred             EEEEeCCCCCC------------------CCCC-----------------------------------------------
Q 016522          133 CSIFNLNSPTD------------------KDGN-----------------------------------------------  147 (388)
Q Consensus       133 i~vw~~~~~~~------------------~~~~-----------------------------------------------  147 (388)
                      +.+|.......                  ..++                                               
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly  292 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY  292 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence            99999872110                  0000                                               


Q ss_pred             ----CceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          148 ----LPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       148 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                          +.+...+.-...+|..++|+..|+. ++.| +.-|.+.||+..+...+...     .+|...+++++++| ++.++
T Consensus       293 elP~f~lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSp-Dgq~i  365 (893)
T KOG0291|consen  293 ELPDFNLIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSP-DGQLI  365 (893)
T ss_pred             ecCCceEEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeec-----cccccceeeEEECC-CCcEE
Confidence                0001111111234455555555543 3333 34477888887777666665     78999999999999 99999


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEE
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  302 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~  302 (388)
                      ++|+.||.|++||...+ -++.++..|++.|+.+.|+..++.+++.+.||+|+.||+...+...++..+...    ...+
T Consensus       366 aTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----Qfsc  440 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSC  440 (893)
T ss_pred             EeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeE
Confidence            99999999999999987 899999999999999999999999999999999999999999988888664432    4789


Q ss_pred             EEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          303 IAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       303 ~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++..|.|..+++|+.|. .|.+|++++|+.+-.+    .+|+++|.+++|+|++..|++|++|.+|++|+.+.
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence            99999999999999887 7999999999999999    89999999999999999999999999999999765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.3e-39  Score=305.52  Aligned_cols=290  Identities=17%  Similarity=0.295  Sum_probs=239.0

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----C----eeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcE
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----Q----KTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC  133 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  133 (388)
                      +.+|.+.|++++|+|+|++||+|+.|+.|+|||..+.    .    ....+. +...+.+++|++ ++.+|++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4559999999999999999999999999999997542    1    122222 345689999987 57899999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ++||+.++.       ....+.+|.+.|++++|+|..+.+|++|+.||.|++||++++.....+     . +...+.++.
T Consensus       558 ~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-----~-~~~~v~~v~  624 (793)
T PLN00181        558 QVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-----K-TKANICCVQ  624 (793)
T ss_pred             EEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-----e-cCCCeEEEE
Confidence            999998754       567788999999999999854578999999999999999998887776     2 335789999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC------ceeeE
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------HQLQV  287 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~  287 (388)
                      |++.++.++++|+.||.|++||++....++..+.+|...|.++.|. ++.+|++++.|+.|++||++.+      ..+..
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~  703 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS  703 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence            9776899999999999999999987755677888999999999997 7789999999999999999753      33333


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC---------CCCCcCCCeeEEEECCCCCeE
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSAL  358 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l  358 (388)
                      +.     .+...+..++|+|++.+|++|+.|+.|++|+.....++..+..         ....+...|.+++|+|++.+|
T Consensus       704 ~~-----gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l  778 (793)
T PLN00181        704 FM-----GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL  778 (793)
T ss_pred             Ec-----CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence            32     2344588999999999999999999999999876544322210         012355679999999999999


Q ss_pred             EEccCCCeEEEecc
Q 016522          359 CTGSWDTNLKVSLH  372 (388)
Q Consensus       359 ~s~~~dg~v~iw~~  372 (388)
                      ++|+.||.|+||..
T Consensus       779 va~~~dG~I~i~~~  792 (793)
T PLN00181        779 VAANSTGNIKILEM  792 (793)
T ss_pred             EEecCCCcEEEEec
Confidence            99999999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-40  Score=277.47  Aligned_cols=291  Identities=23%  Similarity=0.374  Sum_probs=266.0

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      ...+++..|+..|.++.|+|...+++++-.+|.|.|||.++...+..+.....+|++..|-+..+.+++|+.|..|+||+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence            34456777999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      .++..       ....+..|.+.|.+++.+|.. .++++++.|-.|++||.+.+ .+..++     .+|...|.+++|+|
T Consensus        84 ynt~e-------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   84 YNTGE-------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYVMQVAFNP  150 (794)
T ss_pred             cccce-------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEE-----cCcceEEEEEEecC
Confidence            99865       678899999999999999986 68999999999999999876 566677     89999999999999


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      .+.+.|++++-|++|++|.+..+ .+..++.+|...|+|+.|-+  |..+|++|+.|..++|||..+..+++++..+.  
T Consensus       151 kD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt--  227 (794)
T KOG0276|consen  151 KDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT--  227 (794)
T ss_pred             CCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc--
Confidence            99999999999999999999988 88999999999999999998  45699999999999999999999999885544  


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                         ..|+.+.|+|.-..+++|+.||+++||+..+-+...++    ...-++|.|++-.+.+..++.|...|.|.+=.
T Consensus       228 ---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l  297 (794)
T KOG0276|consen  228 ---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL  297 (794)
T ss_pred             ---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence               34999999999999999999999999999998888887    56678999999999888899999888876643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-40  Score=281.97  Aligned_cols=333  Identities=23%  Similarity=0.297  Sum_probs=275.8

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAF  117 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~  117 (388)
                      ..+..+.....|+.....+.+.|+||.+.|.++.|+|+-+  .|++|..|++|++||+.+... +.....|.+.|++++|
T Consensus       121 AtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~  200 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAF  200 (775)
T ss_pred             EeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeee
Confidence            4456678888999999999999999999999999999765  589999999999999986554 7888899999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCC---------------------------------------------------C-
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDK---------------------------------------------------D-  145 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~---------------------------------------------------~-  145 (388)
                      ++++..+++++.|..+.+||+...+..                                                   . 
T Consensus       201 ~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~  280 (775)
T KOG0319|consen  201 SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD  280 (775)
T ss_pred             ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence            999999999999999999997542200                                                   0 


Q ss_pred             C------------------------------------------------------------------------CCceeEE
Q 016522          146 G------------------------------------------------------------------------NLPVSRM  153 (388)
Q Consensus       146 ~------------------------------------------------------------------------~~~~~~~  153 (388)
                      .                                                                        .......
T Consensus       281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i  360 (775)
T KOG0319|consen  281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQI  360 (775)
T ss_pred             chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEE
Confidence            0                                                                        0111234


Q ss_pred             ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      +.+|...|.++....+| .+|++|+.|.++++|.++++...... .....+|...|.+++++.....+|++++.|+++++
T Consensus       361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            66788888888855555 68999999999999988544322221 12227899999999998877889999999999999


Q ss_pred             EECCCCC--c--ceE----EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          234 WDTRVAS--R--AVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       234 ~d~~~~~--~--~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                      |++...+  .  ...    ....|...|++++++|+.+++++||.|.+.+||++........+..     |...+.++.|
T Consensus       439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-----H~RGvw~V~F  513 (775)
T KOG0319|consen  439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-----HTRGVWCVSF  513 (775)
T ss_pred             ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-----CccceEEEEe
Confidence            9998621  1  111    3357999999999999999999999999999999998888887754     4456999999


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecccccc
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCL  384 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~l  384 (388)
                      +|..+.+++++.|++|+||.+.+..++.++    .+|...|..+.|-.+|+.|++++.||.+++|+......++.+..+
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~----eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTF----EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeee----cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            999999999999999999999999999999    899999999999999999999999999999998776555554433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-41  Score=270.10  Aligned_cols=265  Identities=22%  Similarity=0.399  Sum_probs=231.9

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPT  120 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~  120 (388)
                      .+++.+.--.|+...+.....+++|.++|+++.|+++|.++++|+.+|.|++|+..- ..+..+..|. ..|++++|+|+
T Consensus       113 tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpn  191 (464)
T KOG0284|consen  113 TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPN  191 (464)
T ss_pred             eecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCC
Confidence            344445555576666666677889999999999999999999999999999999654 4445555544 88999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      ...|++++.||+|+|||....+       ....+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.++.++   
T Consensus       192 DskF~t~SdDg~ikiWdf~~~k-------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl---  260 (464)
T KOG0284|consen  192 DSKFLTCSDDGTIKIWDFRMPK-------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL---  260 (464)
T ss_pred             CceeEEecCCCeEEEEeccCCc-------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh---
Confidence            9999999999999999998765       445679999999999999985 78999999999999999999999999   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (388)
                        ..|...|..+.|+| ++++|++++.|..+++||++.. +.+..+++|...++++.|+| ...+|.+|+.||.|..|.+
T Consensus       261 --h~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v  336 (464)
T KOG0284|consen  261 --HGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV  336 (464)
T ss_pred             --hhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence              89999999999999 7799999999999999999976 78889999999999999999 7788999999999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      ...+++..+..    .+...|.+++|+|-|..|++|+.|.++++|.-
T Consensus       337 ~~~~p~~~i~~----AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  337 GLEEPLGEIPP----AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccccccCCCc----ccccceeeeeccccceeEeecCCCcceeeecc
Confidence            86666655543    34557999999999999999999999999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.3e-40  Score=282.11  Aligned_cols=220  Identities=28%  Similarity=0.492  Sum_probs=206.4

Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL  129 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  129 (388)
                      ...++......++|.||.++|..+.|+|+.++|+++|.|++|++|.+.+...+..+++|..+|.++.|+|.|-+||+++.
T Consensus       434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC
Confidence            34555666677789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      |++.++|..+...       +.+.+.+|.+.|.|+.|+|+. .++++|+.|.+|++||+.+|..++.|     .+|.++|
T Consensus       514 D~tArLWs~d~~~-------PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~~~V  580 (707)
T KOG0263|consen  514 DQTARLWSTDHNK-------PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF-----TGHKGPV  580 (707)
T ss_pred             CceeeeeecccCC-------chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe-----cCCCCce
Confidence            9999999998744       678899999999999999986 79999999999999999999999999     8999999


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      .+++++| ++.+|++|+.||.|.+||+..+ ..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+.....
T Consensus       581 ~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  581 TALAFSP-CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEEEcC-CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            9999999 9999999999999999999988 88899999999999999999999999999999999999876433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.2e-39  Score=259.65  Aligned_cols=293  Identities=21%  Similarity=0.342  Sum_probs=253.2

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (388)
                      +-.....+..|.+.|..+.|-++...|++|+.|..|++|+....+  ...++.+..++|+.+.|.++++++++++.|+.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            445667888999999999999998999999999999999987665  667788888999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ++|+++...       ...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+..+.      -....+..|.
T Consensus       244 r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~------l~~S~cnDI~  309 (459)
T KOG0288|consen  244 RLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV------LPGSQCNDIV  309 (459)
T ss_pred             eeeeccchh-------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc------cccccccceE
Confidence            999999855       778899999999999998865 34999999999999999998887775      3345566776


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      ..   ...+++|..|++|++||.+.. .+......+. .|+++..++++..|.+++.|..+.+.|+++......+.....
T Consensus       310 ~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~  384 (459)
T KOG0288|consen  310 CS---ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF  384 (459)
T ss_pred             ec---ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence            65   357889999999999999988 7777777655 899999999999999999999999999999887777655432


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC-CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                       ....-.+.+.|||++.|+++|+.||.|+||++.+++....+.   ..+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~---~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS---LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence             233348999999999999999999999999999999988884   22333 699999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-38  Score=239.20  Aligned_cols=288  Identities=18%  Similarity=0.267  Sum_probs=243.9

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      .|+||..+++.+.|+.+|++|++++.|.+..+|-..+|+.+.++.+|.+.|.|++.+.+.+++++|+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEe-----eCCCeEEEEecCC-------CceEEEeecccccCCccCe
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~~i  209 (388)
                      +       ....++ ...+|..+.|+++|. +++..     +..+.|.++|++.       ..+...+     ..+.+.+
T Consensus        85 k-------~la~~k-~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~~ski  150 (327)
T KOG0643|consen   85 K-------QLATWK-TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTPDSKI  150 (327)
T ss_pred             c-------EEEEee-cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCCccce
Confidence            7       333333 457899999999874 44433     3457899999983       3445555     5677899


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.+-|.| -+.++++|..||.|..||.+++...+.....|...|+.++++|+..++++++.|.+-++||..+...++++.
T Consensus       151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999999 889999999999999999999878888888999999999999999999999999999999999999998886


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcE--------------EEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--------------YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--------------~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      ...      ++++.+++|...+++.|+.....              ++|++-..+.+..+    ++|-++|++++|+|+|
T Consensus       230 te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv----kGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  230 TER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV----KGHFGPINSVAFHPDG  299 (327)
T ss_pred             ecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc----cccccCcceeEECCCC
Confidence            643      48999999988877776543322              22333233334444    7899999999999999


Q ss_pred             CeEEEccCCCeEEEeccce
Q 016522          356 SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       356 ~~l~s~~~dg~v~iw~~~~  374 (388)
                      +..++|+.||.|++.....
T Consensus       300 ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccCCCCceEEEEEecc
Confidence            9999999999999986543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-38  Score=265.86  Aligned_cols=267  Identities=21%  Similarity=0.311  Sum_probs=242.9

Q ss_pred             cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ....--++.+..|+-.+...++.+.--.-+|.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|++++.+|
T Consensus        28 ~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP  107 (794)
T KOG0276|consen   28 ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP  107 (794)
T ss_pred             EEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC
Confidence            34445567788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      ...++++++.|-.|++|+.+.      .+.+.+++.+|...|.+++|+|...+.+++++-|++|++|.+....+..++  
T Consensus       108 t~P~vLtsSDDm~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--  179 (794)
T KOG0276|consen  108 TLPYVLTSSDDMTIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--  179 (794)
T ss_pred             CCCeEEecCCccEEEEeeccC------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--
Confidence            999999999999999999986      566889999999999999999998899999999999999999999998888  


Q ss_pred             ccccCCccCeEEEEeeC-CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          200 EFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                         .+|...|+|+++.+ .+..+|++|+.|.++++||..+. .+++++.+|...|..+.|+|.-.++++|++||+++||+
T Consensus       180 ---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  180 ---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             ---eccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence               89999999999987 23469999999999999999987 99999999999999999999999999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      ..+.+...++.....     .+.+++-.+.++.+++|..+|.|.+
T Consensus       256 s~Ty~lE~tLn~gle-----RvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  256 SKTYKLEKTLNYGLE-----RVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CcceehhhhhhcCCc-----eEEEEeecCCCCeEEEeccCCcEEE
Confidence            988777766644333     4899998888888999988876543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=250.30  Aligned_cols=304  Identities=20%  Similarity=0.291  Sum_probs=262.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCc------------------------------ccccccCCCCCcccC
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDV------------------------------AGYSRSQGRAPVSFG   53 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~   53 (388)
                      ++.++++.+.+++..++....++.+....-....+                              .....+.++....|+
T Consensus        57 Sv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D  136 (406)
T KOG0295|consen   57 SVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFD  136 (406)
T ss_pred             ccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEE
Confidence            46677888887777777665444432211111110                              113344677888899


Q ss_pred             CCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           54 PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        54 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      ..+.++.+.|+||++.|.+++|+..|++||+++.|=.+++||..+ .+++....+|...|.+++|-|.|.++++++.|.+
T Consensus       137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            999999999999999999999999999999999998899999977 5677788899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |+.|++.++.       ...++.+|...|..+..+.|| .++++++.|.+|++|-+.++++...+     ..|.-+|.++
T Consensus       217 ik~We~~tg~-------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l-----R~hEh~vEci  283 (406)
T KOG0295|consen  217 IKAWECDTGY-------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL-----REHEHPVECI  283 (406)
T ss_pred             eeEEecccce-------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh-----hccccceEEE
Confidence            9999999876       789999999999999999997 78999999999999999999888888     7899999999


Q ss_pred             EeeCC--------------CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          213 SISGS--------------NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       213 ~~~~~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      +|.|.              .+.++++++.|++|++||+.++ .++.++.+|...|..++|+|.|+||+++..|+++++||
T Consensus       284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            99762              2368999999999999999999 89999999999999999999999999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +++.++...+..+.     ..++++.|+.+..++++|+-|..+++|..
T Consensus       363 l~~~~cmk~~~ah~-----hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  363 LKNLQCMKTLEAHE-----HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eccceeeeccCCCc-----ceeEEEecCCCCceEEeccccceeeeeec
Confidence            99999998886433     35999999999999999999999999963

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.9e-37  Score=250.57  Aligned_cols=295  Identities=17%  Similarity=0.265  Sum_probs=253.5

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCC--
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD--  130 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  130 (388)
                      ..+..+..+.+|..+++-..|+|.|-|+|+|...|+|+|||....+.  ..+++.-.++|..++|+++++.|++.++.  
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre  126 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE  126 (603)
T ss_pred             CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence            34455667889999999999999999999999999999999866443  34566778899999999999999887653  


Q ss_pred             --CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          131 --SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       131 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                        |.+.+||..+         ..-.+.+|...|.++.|-|.-+..+++|+.|+.|.+|+-.--+....+     ..|..-
T Consensus       127 rfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-----r~HskF  192 (603)
T KOG0318|consen  127 RFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-----REHSKF  192 (603)
T ss_pred             ceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-----cccccc
Confidence              4566777655         566789999999999999998888999999999999986655555555     689999


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      |.++.|+| ++.+|++.+.||++.+||-.++ +.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+..
T Consensus       193 V~~VRysP-DG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             eeeEEECC-CCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            99999999 7999999999999999999888 7777776   89999999999999999999999999999999999998


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      .++......  ......+.|-  +..|++.+.+|.|.+++.....++..+    .+|...|++++.++|+++|++|+.||
T Consensus       271 ~t~~~~~~v--~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i----~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  271 STWPMGSTV--EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI----SGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EEeecCCch--hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee----cccccceeEEEEcCCCCEEEeeccCc
Confidence            888664431  1223444564  568999999999999999999988877    89999999999999999999999999


Q ss_pred             eEEEeccc
Q 016522          366 NLKVSLHY  373 (388)
Q Consensus       366 ~v~iw~~~  373 (388)
                      .|.-|+..
T Consensus       343 ~I~~W~~~  350 (603)
T KOG0318|consen  343 HINSWDSG  350 (603)
T ss_pred             eEEEEecC
Confidence            99999854

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.4e-38  Score=266.83  Aligned_cols=292  Identities=21%  Similarity=0.360  Sum_probs=256.8

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      -++.||+..|.+++++.+...+++|+. +.+++|+..+.+++.++...  .+.+..|.|.++++++|...|.+.+||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            467899999999999999877777764 68999999999999888655  789999999999999999999999999988


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-----ce--EEEeecccccCCccCeEEEE
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LR--TSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-----~~--~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ..       .......|.+.|.+++.+|++ ..+++|+.|.+|++||..--     ..  ...+...........|.|+.
T Consensus       444 ~~-------l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  444 AS-------LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             hh-------hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            55       566778999999999999997 56999999999999997521     11  11111111134567899999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      ++| ++.+|+++--|.++++|-+++. +....+.+|.-||.|+..+||++++++|+.|..|++|-+.-|.+-+.+..+..
T Consensus       516 ~Sp-dgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  516 VSP-DGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             EcC-CCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            999 9999999999999999999988 78888999999999999999999999999999999999999999888865443


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                           .|.++.|-|....+++++.|+.|+-||-...+.+..+    .+|...|.|++.+|+|.++++++.|.+|++|...
T Consensus       594 -----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  594 -----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             -----ceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence                 5999999999999999999999999999999999999    8999999999999999999999999999999865


Q ss_pred             e
Q 016522          374 Y  374 (388)
Q Consensus       374 ~  374 (388)
                      -
T Consensus       665 d  665 (888)
T KOG0306|consen  665 D  665 (888)
T ss_pred             C
Confidence            4

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-36  Score=232.11  Aligned_cols=296  Identities=19%  Similarity=0.312  Sum_probs=251.1

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC--CCcE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVC  133 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i  133 (388)
                      .+++.+.|..-.+.|+++.|+++|.+|++++.|.++++||..+++.+.++..+...+..++|......++.++.  |.+|
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            34556677777889999999999999999999999999999999999999999888999999887777777776  8899


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      +..++.+++       ..+.+.+|...|++++.+|-+ ..+++++.|++|++||++..++...+.     .  ..-..++
T Consensus        83 ryLsl~dNk-------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~--~~~pi~A  147 (311)
T KOG1446|consen   83 RYLSLHDNK-------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-----L--SGRPIAA  147 (311)
T ss_pred             EEEEeecCc-------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe-----c--CCCccee
Confidence            999999876       889999999999999999986 679999999999999999888877762     2  2334567


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecc---cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.| .+-++|++.....|++||+|.- +.+...+...   ....+.+.|+|||++|+.++..+.+.+.|.-+|.....+.
T Consensus       148 fDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  148 FDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             ECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence            888 8889999888889999999975 4555555433   5678999999999999999999999999999999888876


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      ........  -...+|+||++++++|+.||+|.+|+++++..+..+.   ..+.+++.++.|+|.-.+++++  +..+.+
T Consensus       227 ~~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~mf~sa--~s~l~f  299 (311)
T KOG1446|consen  227 GYPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYAMFVSA--SSNLVF  299 (311)
T ss_pred             eccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCceeeeeec--CceEEE
Confidence            65443222  2577899999999999999999999999999999884   2278999999999987666665  578999


Q ss_pred             eccce
Q 016522          370 SLHYY  374 (388)
Q Consensus       370 w~~~~  374 (388)
                      |.+..
T Consensus       300 w~p~~  304 (311)
T KOG1446|consen  300 WLPDE  304 (311)
T ss_pred             Eeccc
Confidence            98763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.3e-39  Score=254.42  Aligned_cols=270  Identities=24%  Similarity=0.445  Sum_probs=235.6

Q ss_pred             ccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522           39 AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  118 (388)
                      ...++.++..+..|+.....+.+.|.||++.|.|+.|.  .+.|++|+.|.+|++||+++++++.++-.|...|..+.|+
T Consensus       209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~  286 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS  286 (499)
T ss_pred             hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence            34677889999999999999999999999999999996  4599999999999999999999999999999999999996


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                        ..++++++.|.++.|||+..+.    ...+...+.+|...|+.+.|..   +++++++.|.+|++|++.++..+.++ 
T Consensus       287 --ng~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl-  356 (499)
T KOG0281|consen  287 --NGYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL-  356 (499)
T ss_pred             --CCEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh-
Confidence              5689999999999999999855    3446677889999999999974   58999999999999999999999999 


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                          .+|...|.|+.+   .++++++|+.|.+|++||+..+ .+++.+++|+.-|.++.|  |.+.+++|+.||+|++||
T Consensus       357 ----~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  357 ----NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             ----hcccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence                899999999887   5689999999999999999988 899999999999999999  577899999999999999


Q ss_pred             CCCCceeeEee----eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          279 IRTGHQLQVYY----QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       279 ~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      +..+.......    ......+.+.|..+.|.  ...+++++.|.+|.|||..++.+-
T Consensus       427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence            98765442221    11123455578888884  567888999999999998776543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-37  Score=238.07  Aligned_cols=305  Identities=23%  Similarity=0.324  Sum_probs=259.0

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ..++++.|.||++.|+.++.......+.+++.|.+.+||.++++.++.++.+|.+.|.+++|++.+.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            45678899999999999999887789999999999999999999999999999999999999999999999999999999


Q ss_pred             EeC------CCCCCC-------------------C--------CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          136 FNL------NSPTDK-------------------D--------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       136 w~~------~~~~~~-------------------~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      |..      ..+...                   .        .-..+...+.+|.+.|.+..|...| ..+++++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecccc
Confidence            982      221100                   0        0012345678899999999999876 67999999999


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      ..+||++++..+..+     .+|....+.++-+| ...++++++.|.+.++||++..-..+..|++|...|+++.|..+.
T Consensus       296 AnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  296 ANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             ceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence            999999999999998     89999999999999 889999999999999999997767888999999999999999654


Q ss_pred             CEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  341 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (388)
                       .+++|+.|.+|++||+++.... .++..      .++++.++.+..++.|+.-..+..|++||++..+..........+
T Consensus       370 -~vVSgSDDrTvKvWdLrNMRsplATIRt------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  370 -RVVSGSDDRTVKVWDLRNMRSPLATIRT------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             -ceeecCCCceEEEeeeccccCcceeeec------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence             5899999999999999986544 33322      234899999999999999999999999999765544333334478


Q ss_pred             cCCCeeEEEECCCC--CeEEEccCCCeEEEeccce
Q 016522          342 HEGRITCLGLSADG--SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       342 ~~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~  374 (388)
                      |...|+|++|..+.  .-|+++|.|..+.=|....
T Consensus       443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            99999999998643  4689999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-38  Score=271.30  Aligned_cols=299  Identities=20%  Similarity=0.317  Sum_probs=258.6

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      .|...+..|..++|+|...+++++-..|.|++||..-+..+..+..|.++|+.++|+|++.+|++|+.|..|+||+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                      +       +..++.+|-+.|..+.|++.- ..+++++.|.+|+||+..+++++..+     .+|...|.|..|+| ...+
T Consensus        84 r-------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFhp-tEDl  149 (1202)
T KOG0292|consen   84 R-------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFHP-TEDL  149 (1202)
T ss_pred             e-------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccCC-ccce
Confidence            5       788899999999999999985 57999999999999999999999999     89999999999999 7789


Q ss_pred             EEEeeCCCceEEEECCCCC----------------------------cceEEEecccCCeeEEEEccCCCEEEEeeCCCc
Q 016522          222 FVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (388)
                      +++++-|.+|++||+....                            .....+.+|...|+-++|+|.-.+|++|+.|..
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq  229 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ  229 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence            9999999999999975210                            112456789999999999999999999999999


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      |++|.+...+.-   ......+|...|+++-|+|..+++++.+.|++|+|||+...+.+.++    ....+.-+.++-+|
T Consensus       230 VKlWrmnetKaW---EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----rrendRFW~laahP  302 (1202)
T KOG0292|consen  230 VKLWRMNETKAW---EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----RRENDRFWILAAHP  302 (1202)
T ss_pred             eeEEEeccccce---eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----eccCCeEEEEEecC
Confidence            999998754322   22222445667999999999999999999999999999999999998    56778999999999


Q ss_pred             CCCeEEEccCCCeEEEeccceeeeeccccccc
Q 016522          354 DGSALCTGSWDTNLKVSLHYYIFVLMPCHCLK  385 (388)
Q Consensus       354 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~l~  385 (388)
                      ..+++++|. |+-+.||...-   -+|+++++
T Consensus       303 ~lNLfAAgH-DsGm~VFkleR---Erpa~~v~  330 (1202)
T KOG0292|consen  303 ELNLFAAGH-DSGMIVFKLER---ERPAYAVN  330 (1202)
T ss_pred             Ccceeeeec-CCceEEEEEcc---cCceEEEc
Confidence            998777665 55566665542   24555544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3e-37  Score=231.87  Aligned_cols=284  Identities=19%  Similarity=0.240  Sum_probs=244.1

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--eeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEe
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~  137 (388)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+| +...|++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            77889999999999999999999999999999999987755443  467888899999988 568899999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ++.++       +........+.+ -+.|+|+| .+++.++.|..|...|.++.+.....      .....+..++|+. 
T Consensus        94 ~r~~k-------~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------~~~~e~ne~~w~~-  157 (313)
T KOG1407|consen   94 IRSGK-------CTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------QFKFEVNEISWNN-  157 (313)
T ss_pred             eccCc-------EEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehh------cccceeeeeeecC-
Confidence            99866       444444444444 47899997 68999999999999999988877764      5566788999995 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      .+++|+...-.|.|.|...... +++..+++|.....||.|+|+|++||+|+.|-.+.+||+...-+...+....     
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld-----  231 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD-----  231 (313)
T ss_pred             CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc-----
Confidence            6667666666799999999877 8999999999999999999999999999999999999999888888875543     


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC---------CeEE
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---------TNLK  368 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------g~v~  368 (388)
                      -+|..+.|+.+|++||+|++|..|-|=++.+|..+..+     .+.++-..++|+|...+||-++.|         |.|+
T Consensus       232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vK  306 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVK  306 (313)
T ss_pred             CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeE
Confidence            35999999999999999999999999999999999987     688999999999999999887765         5666


Q ss_pred             Eec
Q 016522          369 VSL  371 (388)
Q Consensus       369 iw~  371 (388)
                      +|-
T Consensus       307 iFG  309 (313)
T KOG1407|consen  307 IFG  309 (313)
T ss_pred             Eec
Confidence            653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=259.16  Aligned_cols=321  Identities=21%  Similarity=0.271  Sum_probs=262.1

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ..+-.++.+..|+.......-+|.||+.+|+++.|...|.+|++||.|+.|.+||+-...-...+.+|...|+..-|..+
T Consensus        81 AVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~  160 (888)
T KOG0306|consen   81 AVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG  160 (888)
T ss_pred             EEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC
Confidence            45556778888998888888999999999999999999999999999999999999887778888888888887777777


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCC----------------------------------------C----------------
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTD----------------------------------------K----------------  144 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~----------------------------------------~----------------  144 (388)
                      .+++++.+.|+.|++||+++...                                        .                
T Consensus       161 ~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~  240 (888)
T KOG0306|consen  161 DSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI  240 (888)
T ss_pred             CeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence            77777777777777777765320                                        0                


Q ss_pred             ------------------------------------------------------C-------------------------
Q 016522          145 ------------------------------------------------------D-------------------------  145 (388)
Q Consensus       145 ------------------------------------------------------~-------------------------  145 (388)
                                                                            .                         
T Consensus       241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~  320 (888)
T KOG0306|consen  241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS  320 (888)
T ss_pred             eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence                                                                  0                         


Q ss_pred             -------------CC---------------Cc------------eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522          146 -------------GN---------------LP------------VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (388)
Q Consensus       146 -------------~~---------------~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  185 (388)
                                   .+               +.            ....+.+|...|.+++++.+.  .++..+..+.+++
T Consensus       321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~Siki  398 (888)
T KOG0306|consen  321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKI  398 (888)
T ss_pred             hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEE
Confidence                         00               00            012345788889999999864  4555556688999


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      |+..+.++++++.     .  ..+.+..|.| +++++++|...|.+.+||+... ..+....+|.+.|.+++.+||+..+
T Consensus       399 Wn~~t~kciRTi~-----~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  399 WNRDTLKCIRTIT-----C--GYILASKFVP-GDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             EEccCcceeEEec-----c--ccEEEEEecC-CCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCce
Confidence            9999999999982     2  3788999999 8899999999999999999987 7788888999999999999999999


Q ss_pred             EEeeCCCcEEEEECCC-----CceeeEee--eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC
Q 016522          266 GTGSDDGTCRLFDIRT-----GHQLQVYY--QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  338 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~-----~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (388)
                      ++|+.|.+|++||..-     +...+.+.  ....-.-...|.++.+||||++|+++--|.++.||-+.+.+...++   
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---  546 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---  546 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---
Confidence            9999999999999742     11111111  1111112235999999999999999999999999999999999888   


Q ss_pred             CCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          339 QNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       339 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                       .+|.-||.||..+||+++++|||.|.+|+||-..+.-
T Consensus       547 -YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD  583 (888)
T KOG0306|consen  547 -YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD  583 (888)
T ss_pred             -cccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence             7999999999999999999999999999999876643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.5e-38  Score=234.11  Aligned_cols=287  Identities=20%  Similarity=0.297  Sum_probs=251.1

Q ss_pred             eccccccCCeeEEEeCC---CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           61 RTLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      .+..||+.+|..++|+|   +|-+|++++.||.=.+-+-++|.-+.++.+|.+.|.....+.+...-++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            36689999999999986   888999999999999999999999999999999999999999988899999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      .-++.       .... ..|+..|..++|+.+. ++|++|+.+..++|||++..+. ...+     .+|.+.|..+.|..
T Consensus        88 a~tgd-------elhs-f~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~-----~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   88 AVTGD-------ELHS-FEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEI-----SGHTGGIRTVLWCH  153 (334)
T ss_pred             hhhhh-------hhhh-hhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhh-----cCCCCcceeEEEec
Confidence            98865       2222 3588899999999986 6799999999999999987643 3334     78999999999998


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                       ..+.+++++.|++||+||.+++ ..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+...++.+..+..   
T Consensus       154 -eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---  226 (334)
T KOG0278|consen  154 -EDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---  226 (334)
T ss_pred             -cCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---
Confidence             6778888899999999999998 6777776 46789999999999877665 456899999999888888765443   


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                         |.+...+|+...+++|+.|..++.||..+++.+..+.   ++|.++|.|+.|+|||..-++|+.||+|++|....
T Consensus       227 ---V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  227 ---VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ---cccccccCCCceEEecCcceEEEEEeccCCceeeecc---cCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence               8899999999999999999999999999999887753   79999999999999999999999999999998654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=243.45  Aligned_cols=249  Identities=23%  Similarity=0.384  Sum_probs=228.4

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +....+.+|.++|.|+++.|.+..|++|+.|++|+|||+.++.       +..++.+|...|..+++++.. .++++++.
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~rH-pYlFs~ge  213 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSKRH-PYLFSAGE  213 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeecccC-ceEEEecC
Confidence            3456678899999999999999999999999999999999977       788899999999999999986 68999999


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      |+.|+.||++..+.++.+     .+|-..|.|++.+| .-..|++|+.|.++++||+++. ..+..+.+|..+|.++.+.
T Consensus       214 dk~VKCwDLe~nkvIR~Y-----hGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHY-----HGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhHHHh-----ccccceeEEEeccc-cceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEee
Confidence            999999999999999998     89999999999999 7789999999999999999988 8899999999999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                      |-...+++|+.|++|++||++.++....+..+..     .+.+++.+|....+|+++.| .|+-|++..+..+..+    
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl----  356 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL----  356 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----
Confidence            9778899999999999999999998888765443     49999999999999999877 6999999999998887    


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .+|..-|++++.+.|| ++++|+++|.+.+|+...
T Consensus       357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             ccccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence            8999999999998877 789999999999998543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-38  Score=248.95  Aligned_cols=277  Identities=23%  Similarity=0.373  Sum_probs=236.6

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      ....|.|+.+.  ...+++|..|++|+|||..+......+.+|.+.|.|+.|.  .+.+++|+.|.+|+|||++++.   
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge---  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE---  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence            44679999985  3489999999999999999999999999999999999985  5599999999999999999977   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                          +..++..|...|..+.|+.   .++++++.|.++.+||+.....+...  ....+|...|+.+.|+.   ++++++
T Consensus       269 ----~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~r--rVLvGHrAaVNvVdfd~---kyIVsA  336 (499)
T KOG0281|consen  269 ----PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDFDD---KYIVSA  336 (499)
T ss_pred             ----hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHH--HHHhhhhhheeeecccc---ceEEEe
Confidence                7788899999999999984   58999999999999999876532211  22268999999999964   599999


Q ss_pred             eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                      +.|.+|++|++.+. ..++++.+|...|-|+.+  .++++++|+.|.+|++||+..|.++..+..+..     -|.++.|
T Consensus       337 SgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-----LvRciRF  408 (499)
T KOG0281|consen  337 SGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-----LVRCIRF  408 (499)
T ss_pred             cCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH-----hhhheee
Confidence            99999999999998 899999999999999998  689999999999999999999999988855443     4999999


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccceEEeeccC-----CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +  .+.+++|..||+|++||+..+........     ....|.+.|..+.|.  ...+++++.|.+|-||+..
T Consensus       409 d--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  409 D--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             c--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence            4  67899999999999999987654321110     114688999999995  5689999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-37  Score=229.21  Aligned_cols=282  Identities=23%  Similarity=0.322  Sum_probs=233.5

Q ss_pred             eEEEeCC-CCCeEEEEe-------CCCcEEEEECCCCCeeeEee--eCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q 016522           71 YSLDWTS-ERNRIVSAS-------QDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        71 ~~~~~~~-~~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~  139 (388)
                      .++.||| -.++||.+.       ..|++.|-++..++-+..+.  .-...+..++|+++ .+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5788999 234554432       46889999986555444433  23456999999995 4678889999999999966


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      .+.      .++..++.|...|.++.|++.....+++++-|++|++|+...++.+.++     .+|...|....|+|..+
T Consensus        92 ~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----~gh~~~Iy~a~~sp~~~  160 (311)
T KOG0277|consen   92 MPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-----NGHNSCIYQAAFSPHIP  160 (311)
T ss_pred             CCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-----cCCccEEEEEecCCCCC
Confidence            543      2577889999999999999987788999999999999999999999999     89999999999999999


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                      +++++++.||.+++||++.+.+... +..|...|.++.|+. +.+.+++|+.|+.|++||+++.+......    ..+.-
T Consensus       161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL----~gh~~  235 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL----NGHGL  235 (311)
T ss_pred             CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee----cCCce
Confidence            9999999999999999998855544 889999999999998 77889999999999999999866432222    33445


Q ss_pred             CeEEEEecCCCC-EEEEEecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEecc
Q 016522          299 HVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       299 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~  372 (388)
                      .|..+.|||... .|++++.|-+++|||...+.. +.+.    ..|+.-|..+.|++ ++.++|+++.|+.++||++
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~----~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV----DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh----hccceEEeccccccccCceeeecccccceeeecc
Confidence            699999999765 889999999999999875443 3333    67889999999998 6779999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=8.6e-37  Score=250.16  Aligned_cols=312  Identities=18%  Similarity=0.225  Sum_probs=246.5

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe----eeEe-eeCCccEEEEEECCCCCEEEEeeCC
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAI-KLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      +....-.|++|+..|+++++.|.|.+|++|+.|.+|++||+.....    ...+ +.....|.++.|++.|..|++.+..
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            3445567899999999999999999999999999999999865332    1112 3345679999999999999999999


Q ss_pred             CcEEEEeCCCCCC-----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccC
Q 016522          131 SVCSIFNLNSPTD-----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSG  204 (388)
Q Consensus       131 g~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~  204 (388)
                      ...+|+|-.....     ...-+.-....++|...++|.+|+|.....+++++.||++++||+...+ ....+......+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            9999999765321     0011122334578999999999999998999999999999999998653 344444443456


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                      ..-.++.++|++ +++++|+|+.||.|.+|+.+...  .....-.+|..  .|+||+|+++|++|++-+.|+++++||++
T Consensus       316 ~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  316 KRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             cccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            667889999999 88999999999999999975431  23445567877  89999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      ..+........  .....+-+.++|||+.++|++|++      .|.+++||..+...+..+    ......|..+.|+|.
T Consensus       395 q~kkpL~~~tg--L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki----~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  395 QFKKPLNVRTG--LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI----DISTASVVRCLWHPK  468 (641)
T ss_pred             ccccchhhhcC--CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe----cCCCceEEEEeecch
Confidence            86544322211  112234578899999999999864      468999999999999888    455788999999999


Q ss_pred             CCeEEEccCCCeEEEeccce
Q 016522          355 GSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       355 ~~~l~s~~~dg~v~iw~~~~  374 (388)
                      -+.|++|+.||.++||.-..
T Consensus       469 LNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             hhheeeecCCCceEEEECcc
Confidence            88999999999999986443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=246.88  Aligned_cols=281  Identities=25%  Similarity=0.386  Sum_probs=241.6

Q ss_pred             cCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      .+.|.+++|+|... -+|+++. -.+.||+..+.....++.-....+.++.|..||++|++|+..|.|+|||+.+..   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence            35799999999554 3444443 479999998888777777777779999999999999999999999999965522   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                          ..+.+.+|..++..+.|+|.++..+++|+.|+.+++||+.+......+     .+|.+.|.|.+|+|.++.++++|
T Consensus       102 ----iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  102 ----ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             ----HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccccCCCeEEEec
Confidence                667889999999999999999899999999999999999998875566     79999999999999889999999


Q ss_pred             eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                      +.||.|++||++.....+..+. |..+|..+.+-|.|..+++++. ..+++||+-+|........    +|...|+|+++
T Consensus       173 sYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~----~H~KtVTcL~l  246 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF----NHNKTVTCLRL  246 (487)
T ss_pred             CCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh----cccceEEEEEe
Confidence            9999999999998754555554 8999999999999999999875 5799999997665544433    13335999999


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ..++..|++|+-|+.|++||+.+.+.+..+     .-.++|.+++.+|+++.++.|..||.+.+=.
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecCCCceEEEecccceeeeeh
Confidence            999999999999999999999999999887     4678999999999999999999999988763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2e-36  Score=238.93  Aligned_cols=286  Identities=22%  Similarity=0.323  Sum_probs=237.1

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC---CEEEEeeCCCcEEEEeCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      |.+-|.++...  ++.|++|+.||.+++|| ..|+....+.+|.++|.+++|....   ..|++++.|.++++|.++.+.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            89999999887  56999999999999999 5789999999999999999885433   459999999999999998765


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-------------------------ceEEEe
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------------------------LRTSVF  197 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-------------------------~~~~~~  197 (388)
                      ..   ........+|...|.++...++| ..+++|+.|..|.+|+..+.                         .++..+
T Consensus       181 ~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  181 NK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             hh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            32   22333445999999999999997 67999999999999993221                         122222


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                           .+|..+|.++.|++  ...+++++.|.+|+.||+.++ .....+.. ...++++..+|..++|++|+.|..|++|
T Consensus       257 -----~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  257 -----EGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             -----cccccceeeEEEcC--CCceEeecccceEEEEEeecc-cceeeeec-CcceeEeecccccceeeecCCCCceeec
Confidence                 68999999999996  678899999999999999988 55555553 5679999999999999999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      |.+++.--.....  -..|...|.++.|+|... .|++|+.|+++++||+++.+ ++..+    .+|.+.|.++.|+ ++
T Consensus       328 DPR~~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----~~h~DKvl~vdW~-~~  400 (423)
T KOG0313|consen  328 DPRTGDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----AGHNDKVLSVDWN-EG  400 (423)
T ss_pred             CCCCCCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----ccCCceEEEEecc-CC
Confidence            9998643222211  134556899999999876 67889999999999999877 88888    7999999999998 56


Q ss_pred             CeEEEccCCCeEEEeccce
Q 016522          356 SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       356 ~~l~s~~~dg~v~iw~~~~  374 (388)
                      ..|++||.|.+|+|+....
T Consensus       401 ~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  401 GLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             ceEEeccCcceEEEecccc
Confidence            6899999999999987543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.8e-38  Score=242.04  Aligned_cols=286  Identities=21%  Similarity=0.345  Sum_probs=249.9

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe--------eeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      |.++-+-|..|+|||++|++|+.||.|.+||..+|+....+        ..+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45567889999999999999999999999999988765433        3467889999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      .+.++.       +.+.+. .|...|+|+.|+.++ ..+++++.|.++++.-+.+|+++..+     .+|.+.|+...|.
T Consensus       291 ri~tG~-------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEf-----rGHsSyvn~a~ft  357 (508)
T KOG0275|consen  291 RIETGQ-------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEF-----RGHSSYVNEATFT  357 (508)
T ss_pred             EEecch-------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHh-----cCccccccceEEc
Confidence            999976       445554 899999999999997 56999999999999999999999999     8999999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      + +++.+++++.||+|++|+..+. .++.++..  ...+|+++..-| +...++++...+++.|.++. |+.+..+....
T Consensus       358 ~-dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk  434 (508)
T KOG0275|consen  358 D-DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK  434 (508)
T ss_pred             C-CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence            8 9999999999999999999887 77777664  345788888887 66788999999999999976 66777665432


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                        ...+...+.+.+|.|.++++.+.|+.++.|.+.+|+....+    ..|+..|..++-+|..+.|++-+.||.+++|.+
T Consensus       435 --REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  435 --REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             --ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhhcCC
Confidence              23334677789999999999999999999999999999988    789999999999999999999999999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.3e-38  Score=245.33  Aligned_cols=295  Identities=18%  Similarity=0.208  Sum_probs=242.1

Q ss_pred             eeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      .+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+.++..++..|.+.|..+++..  ..+++++.|.+|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            345779999999999999977 7899999999999999999999999999999999999987  6788999999999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ++.+        ...++.+ .+.+..+.-+..+ ..++|+|.+  |.|||.+...++..+     .-....|.++.|+|.
T Consensus       136 ~~~~--------p~~tilg-~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~sm-----swG~Dti~svkfNpv  198 (433)
T KOG0268|consen  136 IDGP--------PLHTILG-KSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSM-----SWGADSISSVKFNPV  198 (433)
T ss_pred             ccCC--------cceeeec-ccccccccccccc-ccccccCce--eeecccccCCcccee-----ecCCCceeEEecCCC
Confidence            8862        3333333 3455666666554 568888765  899999988888888     566788999999998


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      ...+|+++..|+.|.+||+++. .+++.... ...-+.|+|+|.+-.++++++|..++.||++.........    ..+.
T Consensus       199 ETsILas~~sDrsIvLyD~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~----~dhv  272 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH----KDHV  272 (433)
T ss_pred             cchheeeeccCCceEEEecccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh----cccc
Confidence            8899999999999999999998 55555442 3455789999988889999999999999998765443322    3455


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeee
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFV  377 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  377 (388)
                      +.|.++.|+|.|+-+++|+.|.+|+||..+.+...-.+.   ...-..|.|+.|+.|.+++++|+.|+.|++|..+-...
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            579999999999999999999999999998776554442   12235799999999999999999999999998765555


Q ss_pred             eccc
Q 016522          378 LMPC  381 (388)
Q Consensus       378 ~~~~  381 (388)
                      +.++
T Consensus       350 lgv~  353 (433)
T KOG0268|consen  350 LGVI  353 (433)
T ss_pred             cCCC
Confidence            5444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-36  Score=253.05  Aligned_cols=274  Identities=24%  Similarity=0.408  Sum_probs=238.6

Q ss_pred             EEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE
Q 016522           73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR  152 (388)
Q Consensus        73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  152 (388)
                      ++|+. .+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+       ...
T Consensus       183 ldWss-~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~~  253 (484)
T KOG0305|consen  183 LDWSS-ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KTR  253 (484)
T ss_pred             hhccc-CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-------ccc
Confidence            56773 446777654 479999999998777667668889999999999999999999999999998755       455


Q ss_pred             Eecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522          153 MLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (388)
Q Consensus       153 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  230 (388)
                      .+.+ |...|.+++|..   ..+.+|+.|+.|..+|++..+.... +     .+|...|..+.|++ ++.++++|+.|+.
T Consensus       254 ~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~-----~~H~qeVCgLkws~-d~~~lASGgnDN~  324 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTL-----QGHRQEVCGLKWSP-DGNQLASGGNDNV  324 (484)
T ss_pred             cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhh-----hcccceeeeeEECC-CCCeeccCCCccc
Confidence            5666 999999999983   5699999999999999998866555 3     78999999999999 9999999999999


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      +.|||.... .+...+..|...|.+++|+| ...+||+|+  .|++|++||..++..+......      ..|+.+.|++
T Consensus       325 ~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg------sQVcsL~Wsk  397 (484)
T KOG0305|consen  325 VFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG------SQVCSLIWSK  397 (484)
T ss_pred             eEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC------CceeeEEEcC
Confidence            999999766 88889999999999999999 677889875  6999999999999988876543      3499999999


Q ss_pred             CCCEEEE--EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          308 SGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       308 ~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ..+-|++  |..++.|.||+..+.+.+..+    .+|...|..++++|||..+++|+.|.++++|+.+..
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9876665  556779999999999998888    899999999999999999999999999999998763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.8e-36  Score=240.65  Aligned_cols=290  Identities=26%  Similarity=0.420  Sum_probs=245.0

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee----E-------------e-eeCCccEEEEEECCCC
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----A-------------I-KLPCAWVMTCAFSPTG  121 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~  121 (388)
                      ...+..|.-+|.|++++|++++.++++.+|+|.-|++.+++...    .             - +.|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            67788899999999999999999999999999999998776331    0             0 2566779999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ++|++|+.|..|.||+.++..       ....+.+|.+.|.+++|-.. ...+++++.|+.|++|++.....+.++    
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetl----  282 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETL----  282 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHH----
Confidence            999999999999999999865       66778999999999999875 467999999999999999998888887    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                       .+|...|.++.... ....+-+|+.|+++++|++..  .....+.++.+.+.|++|- +...+++|+.+|.|.+|++.+
T Consensus       283 -yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  283 -YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             -hCCccceeeechhc-ccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecc
Confidence             89999999999886 677788888999999999953  4555678889999999998 556799999999999999999


Q ss_pred             CceeeEeeeccCCCCC-------CCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccCCCCCcCCCeeEEE
Q 016522          282 GHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      .+++......++....       .+|++++..|...++|+|+.+|.|++|-+..+    .++..+     ...+-|++++
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNsl~  432 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNSLA  432 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEEEE
Confidence            9998888766654333       38999999999999999999999999998877    333343     3668899999


Q ss_pred             ECCCCCeEEEc-cCCCeEEEec
Q 016522          351 LSADGSALCTG-SWDTNLKVSL  371 (388)
Q Consensus       351 ~~~~~~~l~s~-~~dg~v~iw~  371 (388)
                      |+++|+.|++| +....+-=|-
T Consensus       433 f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  433 FSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             EccCCCEEEEecccccccceee
Confidence            99999965554 5555555554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.2e-36  Score=263.13  Aligned_cols=268  Identities=26%  Similarity=0.415  Sum_probs=233.1

Q ss_pred             ccccCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCccEEEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAF  117 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~  117 (388)
                      .....+.....|.+...+  ..+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..+.++.+|...|++++|
T Consensus       175 ~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f  254 (456)
T KOG0266|consen  175 AAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAF  254 (456)
T ss_pred             EEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEe
Confidence            344567778888887777  88888999999999999999999999999999999999 556889999999999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce--EE
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TS  195 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~  195 (388)
                      +|+++++++|+.|++|++||++++.       ....+.+|.+.|++++|++++ +++++++.|+.|++||+.++..  ..
T Consensus       255 ~p~g~~i~Sgs~D~tvriWd~~~~~-------~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~  326 (456)
T KOG0266|consen  255 SPDGNLLVSGSDDGTVRIWDVRTGE-------CVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLK  326 (456)
T ss_pred             cCCCCEEEEecCCCcEEEEeccCCe-------EEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeee
Confidence            9999999999999999999999855       789999999999999999997 7899999999999999999983  44


Q ss_pred             EeecccccCCcc--CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCe---eEEEEccCCCEEEEeeC
Q 016522          196 VFGGEFQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV---NTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       196 ~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~  270 (388)
                      .+     ..+..  .++++.|+| ++.++++++.|+.+++||++.. .....+.+|...+   .+...++.+.++++|+.
T Consensus       327 ~~-----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  327 LL-----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             cc-----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence            44     23333  599999999 9999999999999999999988 7888888887753   34455679999999999


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe--cCCcEEEEEcc
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL  327 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~  327 (388)
                      |+.|.+||+.++..+..+..+.    ...+..+.++|..+++++++  .|+.+++|...
T Consensus       400 d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  400 DGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999877777765431    34589999999999999998  68899999753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=229.23  Aligned_cols=300  Identities=20%  Similarity=0.280  Sum_probs=250.1

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC------------C------CeeeEeeeCCccEEEEEECCCCC
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------S------QKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ..+..|++++.+.+|+|||.++|||+.|..|+|.|++.            +      -.++++..|...|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            45677999999999999999999999999999999851            1      13566777889999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      .|++|+.|++|++||+.....+     ..........+|.++.|+|.| .+++.|..-..+++||+++-++.....+.  
T Consensus       186 ILiS~srD~tvKlFDfsK~saK-----rA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd--  257 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPD--  257 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHH-----HHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcc--
Confidence            9999999999999999874411     111122345689999999997 67899999999999999998887665433  


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccC-CeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                      ..|.+.|+++.+++ .+++.++++.||.|++||--.. +++.++. .|.+ .|.+..|..+++++++.+.|..+++|.+.
T Consensus       258 ~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  258 DQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cccccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            68999999999998 8999999999999999998776 6766654 4554 68999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      +++.+..+......+....-+...|+....|++.-.+ .+.+.-||.++...+..+.   .+|++.+..+.-+|.+.-++
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---lgHn~a~R~i~HSP~~p~Fm  412 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS---LGHNGAVRWIVHSPVEPAFM  412 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc---cCCCCCceEEEeCCCCCcee
Confidence            9999999877544333444566778888888777654 5689999999887766554   68999999999999999999


Q ss_pred             EccCCCeEEEeccc
Q 016522          360 TGSWDTNLKVSLHY  373 (388)
Q Consensus       360 s~~~dg~v~iw~~~  373 (388)
                      +|+.|..+++|...
T Consensus       413 TcsdD~raRFWyrr  426 (430)
T KOG0640|consen  413 TCSDDFRARFWYRR  426 (430)
T ss_pred             eecccceeeeeeec
Confidence            99999999999643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.6e-35  Score=231.53  Aligned_cols=270  Identities=18%  Similarity=0.307  Sum_probs=228.0

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      .+..+...-.|+..+......+.||++.|+++.|+.+|.+||||+.+|.|+||+..++.....+......+.-+.|+|.+
T Consensus        81 TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a  160 (399)
T KOG0296|consen   81 TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA  160 (399)
T ss_pred             ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc
Confidence            34455666778888889999999999999999999999999999999999999999999998888777789999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ..|++|+.||.+.+|.+.+..       ..+.+.+|+.++++-.|.|+| +.++++..||+|++||+.+++++..+...-
T Consensus       161 ~illAG~~DGsvWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e  232 (399)
T KOG0296|consen  161 HILLAGSTDGSVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAE  232 (399)
T ss_pred             cEEEeecCCCcEEEEECCCcc-------eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccc
Confidence            999999999999999998753       678899999999999999997 679999999999999999998877764100


Q ss_pred             ----------------------------------------------ccCCccCeEEEEeeCC--CCcEEEEeeCCCceEE
Q 016522          202 ----------------------------------------------QSGHTADVLSVSISGS--NSRMFVSGSCDSTARL  233 (388)
Q Consensus       202 ----------------------------------------------~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i  233 (388)
                                                                    ...+...+.++.+.|.  .-.++|+|+.||+|.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i  312 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI  312 (399)
T ss_pred             cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence                                                          0011222222332221  3357889999999999


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  313 (388)
                      ||+...  .++..-.|..+|..+.|.+ ..+|++++.+|.|+.||.++|+....+..+     ..+|.+++++|++++++
T Consensus       313 yD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH-----~~~Il~f~ls~~~~~vv  384 (399)
T KOG0296|consen  313 YDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH-----QMGILDFALSPQKRLVV  384 (399)
T ss_pred             Eecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC-----chheeEEEEcCCCcEEE
Confidence            999854  4555556999999999998 789999999999999999999999988554     44599999999999999


Q ss_pred             EEecCCcEEEEEcc
Q 016522          314 AGYSNGDCYVWDTL  327 (388)
Q Consensus       314 ~~~~dg~i~i~d~~  327 (388)
                      +++.|+..+||+..
T Consensus       385 T~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  385 TVSDDNTALVFEVP  398 (399)
T ss_pred             EecCCCeEEEEecC
Confidence            99999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=6e-35  Score=234.45  Aligned_cols=283  Identities=20%  Similarity=0.327  Sum_probs=249.5

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      -.++++...|..+.++||+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||......     
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence            368899988887899999999999999999999999999999999999999999999999999999999987744     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                        .......|..+|+.+..+|.| .||++++.||+..+.|++++..+.....   ....-.+++.+|+| ++.+|.+|..
T Consensus       295 --~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~  367 (506)
T KOG0289|consen  295 --EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTP  367 (506)
T ss_pred             --CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCC
Confidence              445667899999999999997 6899999999999999999988877632   12445689999999 9999999999


Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      ||.|++||+... ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+..+++......    .+.++.|++
T Consensus       368 d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD~  442 (506)
T KOG0289|consen  368 DGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFDQ  442 (506)
T ss_pred             CceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEcC
Confidence            999999999988 688899999999999999999999999999999999999998888777654332    589999999


Q ss_pred             CCCEEEEEecCCcEEEEEcc--cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          308 SGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .|.+|++++.+=.|++++-.  ....+..+    ..|.+..+++.|....++++++|.|..++++.
T Consensus       443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  443 SGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             CCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeecccceEEeeccchhheEEee
Confidence            99999999877666666632  45556666    67888999999999999999999999988875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=257.24  Aligned_cols=299  Identities=19%  Similarity=0.306  Sum_probs=221.8

Q ss_pred             Cceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEE-------------CC--
Q 016522           56 DLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-------------SP--  119 (388)
Q Consensus        56 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-------------~~--  119 (388)
                      .+...+.+. +|.++|+++.|++||+|||+||.||.|+||.+...+...   .+...-.++.+             ++  
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCcccccccc
Confidence            344556677 899999999999999999999999999999986533311   11111111111             11  


Q ss_pred             -CCC--EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522          120 -TGQ--SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       120 -~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                       .++  ..-.+..... .+......   .-...+...+.+|.+.|.++.|+.+  ++|++++.|.+|++|++....++..
T Consensus       332 ~~~~~s~~~~~~~s~~-~~~p~~~f---~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~  405 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPC-VLLPLKAF---VFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKV  405 (712)
T ss_pred             ccccccccccccCCcc-ccCCCccc---cccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeE
Confidence             000  1111111112 11111110   0112356678999999999999985  5899999999999999999999999


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (388)
                      |      .|...|+|++|+|.+.++|++|+-||.++||++...  .+..+..-..-|++++|.|||++.++|+.+|.+++
T Consensus       406 F------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~f  477 (712)
T KOG0283|consen  406 F------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRF  477 (712)
T ss_pred             E------ecCCeeEEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEE
Confidence            8      899999999999999999999999999999999854  34444444578999999999999999999999999


Q ss_pred             EECCCCceeeEeeeccC---CCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          277 FDIRTGHQLQVYYQQHG---ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      |+....+..........   ......|+.+.|.|... .+++.+.|..|+|||.++..++..+..+...  ..-....|+
T Consensus       478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs  555 (712)
T KOG0283|consen  478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFS  555 (712)
T ss_pred             EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEc
Confidence            99988776655543222   11122699999998654 5778889999999999888888888533222  223566889


Q ss_pred             CCCCeEEEccCCCeEEEeccc
Q 016522          353 ADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       353 ~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .||++|++|+.|..|+||...
T Consensus       556 ~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  556 SDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cCCCEEEEeecCceEEEEeCC
Confidence            999999999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.8e-34  Score=268.54  Aligned_cols=268  Identities=18%  Similarity=0.268  Sum_probs=217.1

Q ss_pred             CCcEEEEECCCCCeeeE-----eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC-ceeEEecccccce
Q 016522           88 DGRLIVWNALTSQKTHA-----IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL-PVSRMLSGHKGYV  161 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~v  161 (388)
                      +|.+++|+..+......     +..|...|.+++|+|+|+++++|+.|+.|++|++.......... .....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            67788888776554433     33478889999999999999999999999999986521111111 1112222 34679


Q ss_pred             EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc
Q 016522          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  241 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  241 (388)
                      .+++|++....++++++.||.|++||+.+++.+..+     ..|...|++++|+|.++.+|++|+.||.|++||++.. .
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~  609 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-V  609 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-c
Confidence            999999876678999999999999999999888887     7899999999999878899999999999999999877 6


Q ss_pred             ceEEEecccCCeeEEEEc-cCCCEEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          242 AVRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      .+..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++... ...+.     .+...|.++.|. ++.+|++++.|+
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~  682 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTDN  682 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----CCCCCEEEEEEe-CCCEEEEEECCC
Confidence            66666644 678999995 4799999999999999999987653 33332     344469999997 678999999999


Q ss_pred             cEEEEEcccc------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          320 DCYVWDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       320 ~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .|++||+...      ..+..+    .+|...+.+++|++++.+|++|+.||.|++|...
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            9999998743      455666    7899999999999999999999999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.7e-35  Score=225.68  Aligned_cols=254  Identities=25%  Similarity=0.349  Sum_probs=216.0

Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (388)
                      +..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|+.....      .-...+++|++.|+.+.|.+++ +.+++++.|.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk  112 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTDK  112 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCCc
Confidence            44567899999999999999999999999999999976533      2345677999999999999997 6899999999


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  261 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (388)
                      +|+.||.++++....+     ..|..-++++.....+..++.+++.||++++||+|+. ..++++. ...+++++.|..+
T Consensus       113 ~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~  185 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDT  185 (338)
T ss_pred             eEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEeccc
Confidence            9999999999999999     8999999999876667788889999999999999976 6666664 3567999999999


Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccC
Q 016522          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGS  337 (388)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~  337 (388)
                      +..+++|+-|+.|++||++.+.....+..+     ..+|+.+..+|+|.++.+-+.|.++++||++..    +.+..+..
T Consensus       186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-----~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGH-----ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             ccceeeccccCceeeeccccCcceEEeecc-----cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence            999999999999999999999888887554     445999999999999999999999999998743    33444432


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .....+.....++|+|++..+.+|+.|..+++|+..+
T Consensus       261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             chhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence            2122234566789999999999999999999999654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-35  Score=254.51  Aligned_cols=273  Identities=22%  Similarity=0.311  Sum_probs=234.9

Q ss_pred             cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ...+--.+.+..|+-.-..++..|.+|.++|..++|+|.+.++++|+.|-+|++|+..+.+++.++.+|-..|+.+.|++
T Consensus        24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh  103 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH  103 (1202)
T ss_pred             EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence            34444567778898888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE---
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV---  196 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~---  196 (388)
                      .-..+++++.|.+|+||++.+.+       +...+.+|+..|.|..|+|.. .++++++-|.+|++||+..-.....   
T Consensus       104 eyPWIlSASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg  175 (1202)
T KOG0292|consen  104 EYPWILSASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPG  175 (1202)
T ss_pred             CCceEEEccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCC
Confidence            99999999999999999999876       889999999999999999985 5799999999999999864211100   


Q ss_pred             ---------------------eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCee
Q 016522          197 ---------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVN  254 (388)
Q Consensus       197 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~  254 (388)
                                           .-.....+|...|+-++|+| .-.++++|+.|..|++|.+...+ -.+.+..+|.+.|.
T Consensus       176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs  254 (1202)
T KOG0292|consen  176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS  254 (1202)
T ss_pred             CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence                                 01122378999999999999 77899999999999999987652 24567789999999


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      ++-|+|..+++++.++|++|++||+...+.++++...+.     ..+.++-+|..+++++|. |+-+.+|.+.
T Consensus       255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-----RFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-----RFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             eEEecCccceeEecCCCccEEEEecccccceeeeeccCC-----eEEEEEecCCcceeeeec-CCceEEEEEc
Confidence            999999999999999999999999999999999876554     488999999998888875 4445555543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-36  Score=222.99  Aligned_cols=257  Identities=21%  Similarity=0.377  Sum_probs=218.8

Q ss_pred             CCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECC-CCCEEEEeeC
Q 016522           53 GPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGL  129 (388)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  129 (388)
                      ++...+.+..+. -.+.+..++|+++ .+.+++++.||++++||... ..+++.++.|...|.++.|++ +++.+++++.
T Consensus        47 ~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   47 DPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             CCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence            345555555555 4668999999995 46889999999999999643 457888899999999999998 5677888999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      |++|++|+...+.       ...++.+|...|....|+|..++++++++.||.+++||++.......+     ..|..+|
T Consensus       126 D~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-----~ah~~Ei  193 (311)
T KOG0277|consen  126 DGTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-----EAHNSEI  193 (311)
T ss_pred             CCceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-----Eecccee
Confidence            9999999998765       677899999999999999998999999999999999999876544446     6888999


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      .++.|+..+.+++++|+.|+.|+.||+++...++..+.+|.-.|..++|+| ...+|++++.|-+++|||...+......
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~  273 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET  273 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhh
Confidence            999999989999999999999999999999899999999999999999999 5578999999999999998865544333


Q ss_pred             eeccCCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEc
Q 016522          289 YQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  326 (388)
                      ...    |...+..+.|++- ..++|..+.|+.++||+.
T Consensus       274 ~~~----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  274 VDH----HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhc----cceEEeccccccccCceeeecccccceeeecc
Confidence            332    3345888889875 459999999999999984

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.1e-33  Score=247.75  Aligned_cols=275  Identities=14%  Similarity=0.151  Sum_probs=214.8

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-------------eEeeeCCccEEEEEECC-CCCEEEEeeCCCc
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-------------HAIKLPCAWVMTCAFSP-TGQSVACGGLDSV  132 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  132 (388)
                      -..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+.
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            345666667777667777777777777765433221             23677899999999999 8899999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |++||+...............+.+|...|.+++|+|++.++|++++.|+.|++||++++.....+     ..|...|.++
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-----~~h~~~V~sl  174 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-----KCHSDQITSL  174 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----cCCCCceEEE
Confidence            99999976432111223456788999999999999987678999999999999999999888777     6889999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC-eeEEEEccCCCEEEEee----CCCcEEEEECCCCceeeE
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~  287 (388)
                      +|+| ++.+|++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++......
T Consensus       175 a~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        175 EWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EEEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            9999 8899999999999999999987 677788888765 45788999888877654    478999999987654332


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      ....   .....+....|++++++|++++ .|+.|++||+.+++......   ..+..++..++|.|.
T Consensus       253 ~~~~---d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        253 TVDL---DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK  314 (493)
T ss_pred             Eecc---CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence            2211   1222466678999999998887 49999999999988776653   335567888888885

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-34  Score=217.41  Aligned_cols=270  Identities=20%  Similarity=0.263  Sum_probs=221.9

Q ss_pred             cccccCCCCCcccCCC---Cceeeecc-ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCccEE
Q 016522           40 GYSRSQGRAPVSFGPT---DLVCCRTL-QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVM  113 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~  113 (388)
                      ..+.+.+..++.|+..   ...+...| .+|+..|.+++|+|.|++|++||.|.++.||.-..+  +.+..+.+|...|.
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence            3455667778888766   46777666 469999999999999999999999999999986543  57888999999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-C-
Q 016522          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G-  191 (388)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~-  191 (388)
                      +++|+++|++||+++.|+.|-||.+...    .++.....+..|...|..+.|+|.. .+|++++.|.+|++|+-.. . 
T Consensus       110 ~Vaws~sG~~LATCSRDKSVWiWe~ded----dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd  184 (312)
T KOG0645|consen  110 CVAWSASGNYLATCSRDKSVWIWEIDED----DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD  184 (312)
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEEecCC----CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC
Confidence            9999999999999999999999999843    4677889999999999999999985 6899999999999998773 2 


Q ss_pred             -ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522          192 -LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       192 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (388)
                       .+...+     .+|...|.+++|++ .+..|++++.|++++||.....     .-..|..++..+.|.  ...|++++.
T Consensus       185 W~c~~tl-----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~gg  251 (312)
T KOG0645|consen  185 WECVQTL-----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGG  251 (312)
T ss_pred             eeEEEEe-----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccC
Confidence             456677     78999999999998 7899999999999999986633     122367889999998  557999999


Q ss_pred             CCcEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEcc
Q 016522          271 DGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       271 dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  327 (388)
                      |+.|++|.-...-  +...........|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus       252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999866431  1111111122334456999999995 6699999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.6e-34  Score=239.73  Aligned_cols=263  Identities=32%  Similarity=0.542  Sum_probs=230.5

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ...+.....|+.........+.+|...+.++.|+|++++|++++.||.|++||+.+++....+..+...+.++.|+++++
T Consensus        27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  106 (289)
T cd00200          27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR  106 (289)
T ss_pred             eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence            34467778888888878888999999999999999999999999999999999999888888888988999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      ++++++.+|.+.+|++.+..       ....+..|...+.++.|+|++ .++++++.||.|++||+++++....+     
T Consensus       107 ~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~-----  173 (289)
T cd00200         107 ILSSSSRDKTIKVWDVETGK-------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATL-----  173 (289)
T ss_pred             EEEEecCCCeEEEEECCCcE-------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeE-----
Confidence            99988889999999998543       455666888999999999984 67777777999999999988887777     


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ..+...+.++.|+| +++.+++++.+|.|++||++.. ..+..+..|...+.++.|+|++.++++++.||.|++||+.++
T Consensus       174 ~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         174 TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            57778999999998 7778888888999999999876 677777788889999999999888888888999999999988


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +....+..     +...+.+++|+|+++++++++.||.+++|+
T Consensus       252 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 ECVQTLSG-----HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eeEEEccc-----cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            77776653     334599999999999999999999999996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.9e-35  Score=224.56  Aligned_cols=309  Identities=18%  Similarity=0.269  Sum_probs=231.2

Q ss_pred             CcccCCCCcee-----eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee----eEeeeCCccEEEEEECC
Q 016522           49 PVSFGPTDLVC-----CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        49 ~~~~~~~~~~~-----~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~  119 (388)
                      ...|++.+...     +..|+||.+.|++++|+.||++|+|++.|++|++|++......    .......+..+.++|.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            45566665544     3468999999999999999999999999999999998763321    11122334578999999


Q ss_pred             CCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeE-----EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522          120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      |-+.+++.. ....+++|.+..............     ....|.-.+..+-.... ..++++++.|..|.+|+++ |+.
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~  220 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQL  220 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cce
Confidence            987666554 456899999876554322222211     22345566666655554 4789999999999999998 888


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-------cceEEEecccCCeeEEEEccCCCEEE
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      +..+     ......-+..+.+| +++++++++..-.|++|.+--.+       ..+..+.+|.+.|..++|+|+...++
T Consensus       221 L~~i-----dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  221 LQSI-----DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             eeee-----ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            8777     44555566778898 99999999999999999864321       34567889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCC-------ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          267 TGSDDGTCRLFDIRTG-------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                      +.+.||++++||.+-.       +.+......... ..+....++.+|+|+.||++. ...+++|..++++....+.   
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e---  369 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE---  369 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH---
Confidence            9999999999997531       122222111111 122345899999999988774 4589999999988877765   


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ..|...|++++|+++|++++++| |..+++..
T Consensus       370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  370 DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            78999999999999999999998 77788865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-35  Score=215.49  Aligned_cols=247  Identities=23%  Similarity=0.340  Sum_probs=220.0

Q ss_pred             eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      ....+..+.++|..+.|+-+|+|.++++.|.+|++|+...+.       +.+++.+|...|..++.+.++ ..+++|+.|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dn-skf~s~GgD   80 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDN-SKFASCGGD   80 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccc-cccccCCCC
Confidence            455677889999999999999999999999999999998766       889999999999999999986 569999999


Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeEEEEc
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~  259 (388)
                      ..|.+||+.+|+..+.+     .+|...|+.+.|+. +...+++|+.|.++++||.+.. .++++.+......|.++...
T Consensus        81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~  154 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA  154 (307)
T ss_pred             ceEEEEEcccCeeeeec-----ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence            99999999999999999     89999999999997 8899999999999999999865 36788888888899999885


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                        +..|++|+.||+++.||++.|....-+..       .+|++++|+++++..++++.|+++++.|-.+++.+..+    
T Consensus       155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g-------~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY----  221 (307)
T KOG0316|consen  155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFG-------HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY----  221 (307)
T ss_pred             --ccEEEeeccCCcEEEEEeecceeehhhcC-------CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh----
Confidence              67899999999999999999876654432       35999999999999999999999999999999999988    


Q ss_pred             CCcCCCe--eEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          340 NSHEGRI--TCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       340 ~~~~~~v--~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++|...=  ...+++.....+++|+.||.|.+|+...
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            7777543  4556777788999999999999998643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.4e-34  Score=257.18  Aligned_cols=293  Identities=20%  Similarity=0.287  Sum_probs=242.9

Q ss_pred             ccCCeeEEEeCCCCCeEEEEe--CCCcEEEEECCC------------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALT------------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      +...|.+++.+|+|..++||+  .||.++||+.+.            .+.+.+...|.+.|.|+.|+|||++||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            345799999999999999999  999999998632            334566778999999999999999999999999


Q ss_pred             cEEEEeCCC-----------CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          132 VCSIFNLNS-----------PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       132 ~i~vw~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      .|.||....           +......+.....+.+|.+.|.+++|+|++ .++++++.|++|.+||..+.+.+..+   
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl---  167 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL---  167 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee---
Confidence            999999883           111223466778899999999999999985 89999999999999999999988888   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeC----
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSD----  270 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~----  270 (388)
                        .+|...|..+.|.| -+++|++-+.|++|++|++... ...+.+..+-      .-...+.|+|||++|++...    
T Consensus       168 --~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  168 --RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             --ecccccccceEECC-ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence              89999999999999 8999999999999999997764 4555554432      34778999999999998642    


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-------------CC----EEEEEecCCcEEEEEcccceEEe
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-------------GR----LLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                      -.++.|.+-.+.+.-..+..+     ..++.++.|+|.             ..    .+|+|+.|++|.||.....+++.
T Consensus       244 ~~~~~IieR~tWk~~~~LvGH-----~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  244 KSTIAIIERGTWKVDKDLVGH-----SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             cceeEEEecCCceeeeeeecC-----CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            336888887666666666443     346999999881             11    67889999999999998888776


Q ss_pred             eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...   .-....|.+++|+|||..|++++.||+|.+.....
T Consensus       319 vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  319 VIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             hhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            654   44567899999999999999999999999987654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.7e-36  Score=242.10  Aligned_cols=266  Identities=20%  Similarity=0.298  Sum_probs=228.0

Q ss_pred             ccccCCCCCcccCCCC-ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           41 YSRSQGRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      .+.+.+..+..|+... ..++++|.||+.+|.+++|+++|..+++++.|+.+++||+++|+....+.... .++|+.|+|
T Consensus       231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~p  309 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHP  309 (503)
T ss_pred             EecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCC
Confidence            4455667777788776 89999999999999999999999999999999999999999999998887654 489999999


Q ss_pred             CC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          120 TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       120 ~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      ++ +.+++|+.|+.|+.||+++++       +.+.+..|-+.|..+.|.++| ..+++++.|+.++||+.+.+..+....
T Consensus       310 d~~n~fl~G~sd~ki~~wDiRs~k-------vvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~  381 (503)
T KOG0282|consen  310 DNQNIFLVGGSDKKIRQWDIRSGK-------VVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIA  381 (503)
T ss_pred             CCCcEEEEecCCCcEEEEeccchH-------HHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhc
Confidence            98 889999999999999999976       778888999999999999987 679999999999999999887665542


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                          ....-...++..+| +++++++-+.|..|.+|.+...-  .....+.+|..  .-..+.|||||.+|++|+.||.+
T Consensus       382 ----~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  382 ----DPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             ----chhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence                34445677888999 88999999999999999876431  23345667754  45678999999999999999999


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEE
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWD  325 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d  325 (388)
                      .+||.++-+.+..+..+.     .++..+.|+|... .+|+++.||.|++||
T Consensus       457 ~~wdwkt~kl~~~lkah~-----~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  457 NFWDWKTTKLVSKLKAHD-----QPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeechhhhhhhccccCC-----cceEEEEecCCCcceeEecccCceeEecC
Confidence            999999988888875543     3599999999765 899999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-32  Score=202.54  Aligned_cols=301  Identities=21%  Similarity=0.293  Sum_probs=239.4

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC------CCC-----e----eeEeeeCCccEEEEEECCC
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQ-----K----THAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~~-----~----~~~~~~~~~~v~~~~~~~~  120 (388)
                      .+.++..|. -+..|.+++|+|.|.+.++|+...+.+|-...      .+.     +    ...-+.|.+.|.|.+|+|+
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            455666665 56789999999999999999999999887432      111     1    1222457889999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEee-CCCeEEEEecCCCceEEE
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS-GDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~i~d~~~~~~~~~  196 (388)
                      |.++++|+.|..|++..++.....  ..-....+..|.+.|..++|..+   +..++++++ .|..|++-|..+++....
T Consensus       101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999887754321  11134457789999999999764   345666654 578899999999999888


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--c-----cCCeeEEEEccCCCEEEEee
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----EGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~  269 (388)
                      +     .+|.+.|.++- +. ++-++++|+.|.+|++||++.+ ..+..+..  |     .+.|.+++..|.|++|++|.
T Consensus       179 ~-----sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  179 L-----SGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             e-----cCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence            8     79999998874 32 7789999999999999999977 56655532  2     35689999999999999999


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeE
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITC  348 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~  348 (388)
                      .|....+||++.++.++.+..+.     ..|.++.|+|...|+++++.|.+|++-|+... ....+.. ....|.+.+..
T Consensus       251 ~dssc~lydirg~r~iq~f~phs-----adir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~ehkdk~i~  324 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQRFHPHS-----ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAEHKDKAIQ  324 (350)
T ss_pred             CCCceEEEEeeCCceeeeeCCCc-----cceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEeccCceEE
Confidence            99999999999999999986544     45999999999999999999999999998632 1111111 11578899999


Q ss_pred             EEECCCCCeEEEccCCCeEEEeccc
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +.|+|..--+++.+.|.++.+|.+.
T Consensus       325 ~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  325 CRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEecCccceeeeccCcceEEEeccC
Confidence            9999999889999999999999764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=217.17  Aligned_cols=276  Identities=20%  Similarity=0.328  Sum_probs=224.4

Q ss_pred             cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC-CCee-eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           65 GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        65 ~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      .-.+.|.+++||| ...+++.+|.||+||+|+++. |..+ .....+.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3567899999999 556777999999999999976 3332 344568899999999999999999999999999999986


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      +        ...+..|.++|.++.|.+... ..|++|+.|.+|+.||++....+..+      .....+.++..-   ..
T Consensus       105 Q--------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRvYa~Dv~---~p  167 (347)
T KOG0647|consen  105 Q--------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERVYAADVL---YP  167 (347)
T ss_pred             C--------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee------eccceeeehhcc---Cc
Confidence            5        566788999999999998542 36899999999999999998888886      456678877763   36


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC--ceeeEeeeccCC---
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGE---  294 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~---  294 (388)
                      +++++..+..|.+|+++++....+.... -.-.+.|++..++....+.|+-+|.+.|..+..+  +.-..+..+...   
T Consensus       168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            8889999999999999876444333322 2345889999998888899999999999999886  334444444421   


Q ss_pred             -CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                       .....|++++|+|....|++++.||+..+||-.....+...    ..|..+|++.+|+.+|.+++=+
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEE
Confidence             12456899999999999999999999999998877777776    6899999999999999977644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=247.05  Aligned_cols=289  Identities=24%  Similarity=0.395  Sum_probs=250.2

Q ss_pred             ccCCCCceeeecccc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE-eeeCCccEEEEEECCCCCEEEEee
Q 016522           51 SFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-IKLPCAWVMTCAFSPTGQSVACGG  128 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~  128 (388)
                      .|.+........+.+ |...+.+..|.  ..++++++.|++|++||..++..+.. +.+|.+.|.++++..-+.++++|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS  268 (537)
T KOG0274|consen  191 NWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS  268 (537)
T ss_pred             cccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe
Confidence            455444444455554 56689999998  45899999999999999999999888 999999999999988889999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .|.++++||..++.       ....+.+|.+.|.++...+   ..+++|+.|.+|++|++.++..+..+     .+|..+
T Consensus       269 ~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h~~~  333 (537)
T KOG0274|consen  269 TDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLL-----RGHTGP  333 (537)
T ss_pred             cCCcEEeEecCCCc-------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEe-----cccccc
Confidence            99999999998876       8899999999999998875   46888999999999999999999998     669999


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC-ceeeE
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQLQV  287 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~  287 (388)
                      |.++..+   +.++++|+.||+|.+||+.+. +++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..
T Consensus       334 V~~v~~~---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  334 VNCVQLD---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             EEEEEec---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence            9999986   579999999999999999977 999999999999999988654 89999999999999999999 77777


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC-cCCCeeEEEECCCCCeEEEccCCCe
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                      +..+..     -+..+.  ..+++|++++.|+.|++||..+++.+..+    .+ |.+.|+.+++.  ...+++++.||.
T Consensus       409 l~~h~~-----~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~----~~~~~~~v~~l~~~--~~~il~s~~~~~  475 (537)
T KOG0274|consen  409 LQGHTS-----LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTL----EGRHVGGVSALALG--KEEILCSSDDGS  475 (537)
T ss_pred             hcCCcc-----cccccc--cccceeEeccccccEEEeecccCceeeee----ccCCcccEEEeecC--cceEEEEecCCe
Confidence            654332     244443  46789999999999999999999999998    45 67889999886  457899999999


Q ss_pred             EEEeccce
Q 016522          367 LKVSLHYY  374 (388)
Q Consensus       367 v~iw~~~~  374 (388)
                      +++|+...
T Consensus       476 ~~l~dl~~  483 (537)
T KOG0274|consen  476 VKLWDLRS  483 (537)
T ss_pred             eEEEeccc
Confidence            99997654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=7.6e-35  Score=217.78  Aligned_cols=270  Identities=25%  Similarity=0.443  Sum_probs=231.3

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      .+...+..|..-+-.+..-+.+|.||+++|+....+.+..+-|+++.|-+-++||..+|..++.+. |..-|.+++|+.|
T Consensus        33 isa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d  111 (334)
T KOG0278|consen   33 ISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD  111 (334)
T ss_pred             EEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc
Confidence            344456666666666777788999999999999999998899999999999999999999998876 5666999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      .++|++|+.+..++|||++.++.      ....+.+|.+.|..+.|... ++.+++++.|++|++||.+++..+..+   
T Consensus       112 s~~lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL---  181 (334)
T KOG0278|consen  112 SNYLLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSL---  181 (334)
T ss_pred             chhhhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEE---
Confidence            99999999999999999998653      45667899999999999987 478999999999999999999999987   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                         ....+|+++.+++ ++.++.+ ...+.|.+||.... ..++.+. -...|.+.+++|+...+++|+.|..++.||..
T Consensus       182 ---~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  182 ---EFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             ---ecCCCCcceeecc-CCCEEEE-ecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEecc
Confidence               5667899999998 7666654 45788999999877 6666665 35678999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      ++..+..+.    ..+.++|.++.|+|+|...++|+.||+|++|.+..++..
T Consensus       255 TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  255 TGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            999988852    334557999999999999999999999999998766544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2e-33  Score=222.08  Aligned_cols=270  Identities=24%  Similarity=0.371  Sum_probs=225.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCC---CeEEEEeCCCcEEEEECCCCCee----eEeeeCCccEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVM  113 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~  113 (388)
                      ..+..++..+.|+.. .+..+++.||.++|.+++|....   ..|++++.|.++++|.++.++..    ....+|...|.
T Consensus       119 ltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~  197 (423)
T KOG0313|consen  119 LTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD  197 (423)
T ss_pred             EEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence            555667778888754 68889999999999998886533   36999999999999998776543    33458999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCC------------------CCCCCCceeEEecccccceEEEEEEeCCCceEE
Q 016522          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPT------------------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI  175 (388)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (388)
                      ++...++|..+++|+.|..+.+|+.....                  .......+...+.+|..+|.++.|++.  ..++
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~y  275 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIY  275 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceE
Confidence            99999999999999999999999943211                  011223456678999999999999983  5799


Q ss_pred             EeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCe
Q 016522          176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDV  253 (388)
Q Consensus       176 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i  253 (388)
                      +++.|.+|+.||+.++.....+      .....++++..+| ..++|++|+.|..+++||.+++..  ..+++.+|.+.|
T Consensus       276 S~SwDHTIk~WDletg~~~~~~------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV  348 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTL------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV  348 (423)
T ss_pred             eecccceEEEEEeecccceeee------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence            9999999999999999988886      4567899999999 889999999999999999998743  456788999999


Q ss_pred             eEEEEcc-CCCEEEEeeCCCcEEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          254 NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       254 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      .++.|+| +...|++|+.|+++++||+++.+ ++..+..+     ...|.++.|+ ++.+|++|+.|.+|+|+..
T Consensus       349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-----~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-----NDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----CceEEEEecc-CCceEEeccCcceEEEecc
Confidence            9999999 56678999999999999999987 67666543     3459999997 5679999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-34  Score=231.68  Aligned_cols=259  Identities=23%  Similarity=0.340  Sum_probs=224.8

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEE
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVA  125 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~  125 (388)
                      .....|+.......+++.-..+.|.+++|..||++||.|...|.|+|||..+...+..+..|..++..+.|+|++ ..++
T Consensus        48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~  127 (487)
T KOG0310|consen   48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLV  127 (487)
T ss_pred             cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEE
Confidence            334456667777777788888999999999999999999999999999977777788899999999999999955 5677


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSG  204 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~  204 (388)
                      +|+.|+.+++||+.+..       ....+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+      .
T Consensus       128 s~sDd~v~k~~d~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------n  194 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------N  194 (487)
T ss_pred             ecCCCceEEEEEcCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------c
Confidence            78889999999999854       466789999999999999998889999999999999999987 555554      8


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      |..+|..+.+-| .+.++++++ ...+++||+..+.+.+..+..|...|+|+.+..++..|++++-|+.+++||+.+.+.
T Consensus       195 hg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  195 HGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             CCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence            999999999999 777888776 568999999988777777777999999999999999999999999999999888777


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +..+...      ++|.+++.+|++..+++|..||.+.+-+.
T Consensus       273 v~s~~~~------~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  273 VHSWKYP------GPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             EEeeecc------cceeeEEecCCCceEEEecccceeeeehh
Confidence            7766442      35999999999999999999998877643

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.3e-32  Score=238.16  Aligned_cols=257  Identities=16%  Similarity=0.221  Sum_probs=200.6

Q ss_pred             EeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCCCC-CCceeEEecccccceE
Q 016522           85 ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDG-NLPVSRMLSGHKGYVS  162 (388)
Q Consensus        85 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~v~  162 (388)
                      |+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|++|++........ .......+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667889999998888888889999999999999996 78999999999999999986431100 1123446788999999


Q ss_pred             EEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc
Q 016522          163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (388)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (388)
                      +++|+|++..++++++.|+.|++||+++++....+      .+...|.+++|+| ++.+|++++.|+.|++||++++ ..
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~  201 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EI  201 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cE
Confidence            99999998667789999999999999998876665      3457899999999 8899999999999999999987 77


Q ss_pred             eEEEecccCCeeEE-----EEccCCCEEEEeeCCC----cEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          243 VRTFHGHEGDVNTV-----KFFPDGNRFGTGSDDG----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       243 ~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      +..+.+|.+.+...     .|++++.+|++++.|+    .|++||++. ..++......   .....+......++|.++
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld---~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID---NASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec---CCccceEEeeeCCCCCEE
Confidence            78888998765433     3458889999988774    799999996 4445443221   122223344445568899


Q ss_pred             EEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      ++|+.|+.|++|++..+. +..+..  ..+..++.+++|.|..
T Consensus       279 lsGkGD~tIr~~e~~~~~-~~~l~~--~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGS-IRKVNE--YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEECCCeEEEEEccCCc-EEeecc--cccCCCccceEEcccc
Confidence            999999999999997764 333322  2366788999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=8.7e-33  Score=242.29  Aligned_cols=268  Identities=26%  Similarity=0.428  Sum_probs=237.2

Q ss_pred             ccccCCCCCcccCCCCceeeec-cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ..++.+.....|+..+...+.. |.||.+.|.++++...+++|++|+.|.++++||..+|++...+.+|...|.++... 
T Consensus       222 ~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-  300 (537)
T KOG0274|consen  222 KSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-  300 (537)
T ss_pred             EecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-
Confidence            3556667777899999999888 99999999999998878899999999999999999999999999999999888764 


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                       +.++++|+.|.+|++|+++++.       ....+.+|.++|.++...   ..++++|+.||+|++||+.+++++..+  
T Consensus       301 -~~~~~sgs~D~tVkVW~v~n~~-------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--  367 (537)
T KOG0274|consen  301 -PFLLVSGSRDNTVKVWDVTNGA-------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--  367 (537)
T ss_pred             -CceEeeccCCceEEEEeccCcc-------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--
Confidence             5578889999999999999766       677888899999999998   368999999999999999999999999  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                         .+|...|.++.+.+ . ..+++|+.|++|++||+++..+++..+.+|..-+..+.+  .+++|++++.|++|++||.
T Consensus       368 ---~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  368 ---SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDA  440 (537)
T ss_pred             ---cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeec
Confidence               89999999998865 3 899999999999999999876788999999998877766  5789999999999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      .+++++..+...    +...+..+++.  ...+++++.||.+.+||+++++....+
T Consensus       441 ~~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  441 EEGECLRTLEGR----HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccCceeeeeccC----CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            999999988663    23357877765  468888999999999999999988766

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-34  Score=226.46  Aligned_cols=265  Identities=18%  Similarity=0.303  Sum_probs=218.0

Q ss_pred             cccCCCCCcccCC---CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-CccEEEEEE
Q 016522           42 SRSQGRAPVSFGP---TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAF  117 (388)
Q Consensus        42 ~~~~~~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~  117 (388)
                      +.+.+.....|..   ...+..+++.||..+|..+.||||.++|++++.|..+.+||+.+|.....+... ...+.+++|
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            3344455555533   346779999999999999999999999999999999999999999998877644 567999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      .|||..+++|+.|+.+..||++...        .....+ ....|.+++..+|| ..+++.+.|..|++++.++......
T Consensus       321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--------~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~l  391 (519)
T KOG0293|consen  321 CPDGFRFVTGSPDRTIIMWDLDGNI--------LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGL  391 (519)
T ss_pred             ccCCceeEecCCCCcEEEecCCcch--------hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhcc
Confidence            9999999999999999999998743        111111 12468999999998 5688888999999999988766654


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC--eeEEEEcc-CCCEEEEeeCCCc
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFP-DGNRFGTGSDDGT  273 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~  273 (388)
                      .      ....+|++++.+. +++++++.-.+..+++||+... ..++.+.+|...  +..-+|-- +..++++|++|+.
T Consensus       392 i------se~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  392 I------SEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             c------cccCceeEEEEcC-CCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence            3      4567899999997 8899999999999999999966 788888888764  34445544 5689999999999


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEccc
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  328 (388)
                      |+||+..+++++..+..+.     ..|++++|+|... ++|+++.||+|+||....
T Consensus       464 vyIWhr~sgkll~~LsGHs-----~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  464 VYIWHRISGKLLAVLSGHS-----KTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEEEEccCCceeEeecCCc-----ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999999999985544     4599999999776 889999999999997653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-33  Score=226.21  Aligned_cols=256  Identities=17%  Similarity=0.324  Sum_probs=214.5

Q ss_pred             cccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC----------eeeEeeeCCccEEEEEECCC-CCEEEEeeCCCc
Q 016522           65 GHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ----------KTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSV  132 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  132 (388)
                      -|.+.|+.+.+.|+.. .+|+.+..+.|.|||..+-.          +-..+.+|...-.++.|++. .-.|++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4999999999999664 66778889999999985422          22367788877788999984 467899999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC--CceEEEeecccccCCccCeE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~i~  210 (388)
                      |++||+...............+.+|...|..++|++....++++++.|+.+.|||+++  .+.....     ..|...+.
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-----~ah~~~vn  276 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-----KAHSAEVN  276 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-----cccCCcee
Confidence            9999999866544456677889999999999999999888999999999999999995  3333443     78999999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceee---
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ---  286 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---  286 (388)
                      |++|+|.++.+||+|+.|++|.+||+|+...++..+.+|...|.++.|+| ....|++++.|+.+.+||+..-...+   
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            99999999999999999999999999999899999999999999999999 56788999999999999996532222   


Q ss_pred             --------EeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcc
Q 016522          287 --------VYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       287 --------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  327 (388)
                              .+..+  .+|...|..+.|+|+.. .|++...|+.+.||.+.
T Consensus       357 da~dgppEllF~H--gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 DAEDGPPELLFIH--GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhccCCcceeEEe--cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                    11121  34667799999999988 66778899999999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-32  Score=209.28  Aligned_cols=273  Identities=22%  Similarity=0.335  Sum_probs=222.4

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      .+.|++|.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.++.    
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~----   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN----   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence            5679999999999999999999999999998875555444 778899999987 5678999999999999999865    


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                          ...+..|..+|.|+.+.+. ...+++|+.|++|++||.+.......+      .....|.++...   ++.|++|+
T Consensus        87 ----~~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~------d~~kkVy~~~v~---g~~LvVg~  152 (323)
T KOG1036|consen   87 ----EDQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTF------DQGKKVYCMDVS---GNRLVVGT  152 (323)
T ss_pred             ----ceeeccCCCceEEEEeecc-CCeEEEcccCccEEEEecccccccccc------ccCceEEEEecc---CCEEEEee
Confidence                4567789999999999986 467999999999999999985555554      344588888764   57889999


Q ss_pred             CCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC----ceeeEeeeccC----CCCC
Q 016522          227 CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG----HQLQVYYQQHG----ENEI  297 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~----~~~~  297 (388)
                      .+..+.+||+++...+.+.. ..-...+.++++.|++.-+++++-||.|.+=.++..    .....+..+..    ....
T Consensus       153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            99999999999885555322 234457899999998888999999999988776655    22233333222    1223


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  363 (388)
                      .+|++++|+|-...+++|+.||.|.+||+.+.+.+..+    ..-...|..++|+.+|..||+|+.
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence            47999999999999999999999999999999999888    455678999999999999999873

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.7e-32  Score=235.82  Aligned_cols=229  Identities=17%  Similarity=0.268  Sum_probs=184.4

Q ss_pred             ccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCc
Q 016522           62 TLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSV  132 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  132 (388)
                      .+.||.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+.+|...|.+++|+|++ .+|++|+.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8889999999999999999765       3466788899999999999985 69999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC-eEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD-VLS  211 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-i~~  211 (388)
                      |++||+.++.       ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+     ..|... ...
T Consensus       150 VrIWDl~tg~-------~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl-----~~H~~~~~~~  216 (493)
T PTZ00421        150 VNVWDVERGK-------AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSV-----EAHASAKSQR  216 (493)
T ss_pred             EEEEECCCCe-------EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEE-----ecCCCCcceE
Confidence            9999998754       566778899999999999987 68999999999999999999888777     566554 346


Q ss_pred             EEeeCCCCcEEEEee----CCCceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEee-CCCcEEEEECCCCcee
Q 016522          212 VSISGSNSRMFVSGS----CDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL  285 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  285 (388)
                      +.|.+ +...+++++    .|+.|++||+++...++.....+. ..+....|++++++|++++ .|+.|++||+.+++..
T Consensus       217 ~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        217 CLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             EEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            77887 444555443    478999999997755665554333 3455677899999999887 5999999999998866


Q ss_pred             eEeeeccCCCCCCCeEEEEecCC
Q 016522          286 QVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                      ......    ...+...++|.|.
T Consensus       296 ~~~~~~----s~~~~~g~~~~pk  314 (493)
T PTZ00421        296 FCSSYS----SVEPHKGLCMMPK  314 (493)
T ss_pred             EEeecc----CCCCCcceEeccc
Confidence            554322    2234677888774

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-32  Score=206.79  Aligned_cols=278  Identities=18%  Similarity=0.251  Sum_probs=223.0

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ++-..+..|..|-..+...+-++.||++.|+|++.+-+.+.++||+.|.++++||+++|+.+..++.. .+|..+.|+++
T Consensus        26 FscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~  104 (327)
T KOG0643|consen   26 FSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFG  104 (327)
T ss_pred             EEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccC
Confidence            45567888999999999999999999999999999999999999999999999999999999998865 45999999999


Q ss_pred             CCEEEEeeC-----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE
Q 016522          121 GQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS  195 (388)
Q Consensus       121 ~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  195 (388)
                      |++++....     .+.|.++|++..........+...+..+...++.+.|.|.+ .+|++|..||.|.+||.+++....
T Consensus       105 gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  105 GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELV  183 (327)
T ss_pred             CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceee
Confidence            998887754     46899999986543333333456667778999999999986 689999999999999999985544


Q ss_pred             EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc--
Q 016522          196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT--  273 (388)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--  273 (388)
                      .-.    ..|...|+.+.+++ +..++++++.|.+-++||.++. ..++++. ...||++.+++|....++.|+....  
T Consensus       184 ~s~----~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~d  256 (327)
T KOG0643|consen  184 DSD----EEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMD  256 (327)
T ss_pred             ech----hhhccccccccccC-CcceEEecccCccceeeeccce-eeEEEee-ecccccceecccccceEEecCCceeee
Confidence            432    67889999999999 8999999999999999999987 6666665 5679999999997777776654322  


Q ss_pred             EEEEECCCCceeeEe-------eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          274 CRLFDIRTGHQLQVY-------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       274 i~i~d~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      |.--+.+.++-...+       ....-..|.++|++++|+|+|+..++|+.||.|++.-..
T Consensus       257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            222222223211111       111124566789999999999999999999999987543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=226.08  Aligned_cols=327  Identities=15%  Similarity=0.207  Sum_probs=261.8

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ..+++.+....|+....+.+++++++.+.|+++.=+|--+.+|.|..+|+|.++++..++.+.+++...++|+.+.|..|
T Consensus       176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD  255 (910)
T KOG1539|consen  176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD  255 (910)
T ss_pred             EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence            44566777888999999999999999999999999998889999999999999999999999999988899999999999


Q ss_pred             CCE-EEEeeCCCcEEEEeCCCCCCC----------------------------------------CCCCceeEEeccccc
Q 016522          121 GQS-VACGGLDSVCSIFNLNSPTDK----------------------------------------DGNLPVSRMLSGHKG  159 (388)
Q Consensus       121 ~~~-l~~~~~dg~i~vw~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~  159 (388)
                      |.. +++|+..|.+.+||++..+..                                        .+.....+.-.+|..
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            965 556667799999999874410                                        111223344568999


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc---------------eEE-------------E---------------
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL---------------RTS-------------V---------------  196 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---------------~~~-------------~---------------  196 (388)
                      +..|+.|.......+.+++.|++.+.+++....               ...             .               
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            999999986666788899999887777643210               000             0               


Q ss_pred             -----------------------eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---eccc
Q 016522          197 -----------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHE  250 (388)
Q Consensus       197 -----------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~  250 (388)
                                             +...........+++++.++ .+++.+.|...|.|-+|++..+ .....+   ..|.
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~  493 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHK  493 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC-eeecccccCcccc
Confidence                                   00000011336788899998 8999999999999999999987 555555   5799


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC------------------------------------C
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG------------------------------------E  294 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~  294 (388)
                      ++|++++...-++.+++++.+|.+++||..+......+.....                                    .
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            9999999998889999999999999999987654333322111                                    1


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-CeEEEeccc
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVSLHY  373 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~  373 (388)
                      +|...|++++|||||++|++++.|++|++||+.++..+-.+     .-..+.+++.|+|+|.+|||...| .-|++|.-.
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            46678999999999999999999999999999999998776     457789999999999999999998 779999854


Q ss_pred             e
Q 016522          374 Y  374 (388)
Q Consensus       374 ~  374 (388)
                      .
T Consensus       649 s  649 (910)
T KOG1539|consen  649 S  649 (910)
T ss_pred             h
Confidence            3

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-30  Score=201.78  Aligned_cols=255  Identities=20%  Similarity=0.256  Sum_probs=208.0

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +..+.++.....|.++.|+++|.++++++.|..+++||..+++       ..+++..++-.+..++|.... +.++.++.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~-~~~i~sSt   76 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHS-NTVIHSST   76 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCC-ceEEEccC
Confidence            3444555567889999999999999999999999999999876       677777777788888888775 45565555


Q ss_pred             --CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEE
Q 016522          180 --DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (388)
Q Consensus       180 --dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (388)
                        |.+|+..++.+.+.++.|     .+|...|++++.+| .+..+++++.|++|++||++.. ++...+...  .-..++
T Consensus        77 k~d~tIryLsl~dNkylRYF-----~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~--~~pi~A  147 (311)
T KOG1446|consen   77 KEDDTIRYLSLHDNKYLRYF-----PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLS--GRPIAA  147 (311)
T ss_pred             CCCCceEEEEeecCceEEEc-----CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-CCceEEecC--CCccee
Confidence              889999999999999999     89999999999999 6689999999999999999966 554444433  334589


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCCC--ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      |+|+|-++|++...+.|++||++..  .+...+...  .+.....+.+.|+|||++|+.++..+.+++.|.-+|....++
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence            9999999999998889999999875  233333332  133456899999999999999999999999999999988887


Q ss_pred             cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .........+ ...+|+||++++++|+.||+|.+|+...
T Consensus       226 s~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  226 SGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             eeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            5432232223 5678999999999999999999999743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-32  Score=228.42  Aligned_cols=282  Identities=26%  Similarity=0.404  Sum_probs=234.7

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee--eEeeeCCccEEE-EEECC-CCCEEEEeeCCC
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMT-CAFSP-TGQSVACGGLDS  131 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg  131 (388)
                      ..+..+.+.||+..|..+++.+.. .++++|.||++++|+-...+.+  +.+..|.+.|.. +++.+ ++-.+++|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            457788999999999999987654 8999999999999997555443  446667777776 77775 556799999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      .|.+|...+..       +...+.+|...|.++....++  .+++|+.|.++++|-+..  +...+     .+|...|.+
T Consensus        82 ~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l-----~gH~asVWA  145 (745)
T KOG0301|consen   82 TIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSL-----QGHTASVWA  145 (745)
T ss_pred             eEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhccc-----CCcchheee
Confidence            99999998755       678899999999999887765  399999999999998654  44445     799999999


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      +...| ++ .+++|+.|.+|++|.-.   +.++++.+|.+.|+.+++-+++ .|++++.||.|++|++ ++..+..+.. 
T Consensus       146 v~~l~-e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g-  217 (745)
T KOG0301|consen  146 VASLP-EN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG-  217 (745)
T ss_pred             eeecC-CC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec-
Confidence            99998 44 88999999999999853   7899999999999999999765 5889999999999999 6777777643 


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                          |...+.++...+++..++++++|++++||+..  ++...+    .-....|+++.+-++|. |++|++||.|+||.
T Consensus       218 ----htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I----~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  218 ----HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI----TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             ----cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE----ecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence                44569999988888999999999999999976  555555    33445899999888886 88899999999998


Q ss_pred             cc
Q 016522          372 HY  373 (388)
Q Consensus       372 ~~  373 (388)
                      ..
T Consensus       287 ~~  288 (745)
T KOG0301|consen  287 VD  288 (745)
T ss_pred             ec
Confidence            65

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.4e-33  Score=232.82  Aligned_cols=296  Identities=21%  Similarity=0.366  Sum_probs=240.3

Q ss_pred             ccCCee---EEEeCC-CCCeEEEEeCCCcEEEEECCCCC------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           66 HAGKVY---SLDWTS-ERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        66 h~~~v~---~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      |...|.   ++..+. .+++|+|||.||.|++|+.....      ....+..|..+|..++...+++.|++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            455555   455544 56689999999999999875432      36677889999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce--EEEeec----ccccCCccCe
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG----EFQSGHTADV  209 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~----~~~~~~~~~i  209 (388)
                      |+.....     ..+...+..|.+.|.|+++-.....++++||-|+.|.+||++++..  +..+..    ....++...|
T Consensus       100 W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si  174 (735)
T KOG0308|consen  100 WNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI  174 (735)
T ss_pred             eecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence            9998642     2366788899999999999444457899999999999999998732  222211    1113788899


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      .+++.++ .+..+++|+..+.+++||.++. ..+..+.+|...|..+..++||..+++++.||+|++||+...+++.++.
T Consensus       175 YSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  175 YSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             eeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            9999998 7789999999999999999998 6777888999999999999999999999999999999999999999976


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      .+..     .+.++..+|+-.++++|+.||.|+.=|+.+......+    -....+|..+..+.+.+-+-+++.|+.|+=
T Consensus       253 vH~e-----~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l~~~~~~~~~WvtTtds~I~r  323 (735)
T KOG0308|consen  253 VHKE-----GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKLHLHEHDNSVWVTTTDSSIKR  323 (735)
T ss_pred             eccC-----ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhhhhccccCCceeeecccccee
Confidence            5443     4999999999999999999999999999884322222    234567888888765555688889999999


Q ss_pred             eccceeee
Q 016522          370 SLHYYIFV  377 (388)
Q Consensus       370 w~~~~~~~  377 (388)
                      |.......
T Consensus       324 W~~~~~~~  331 (735)
T KOG0308|consen  324 WKLEPDIA  331 (735)
T ss_pred             cCCccccc
Confidence            98665443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-33  Score=237.89  Aligned_cols=284  Identities=19%  Similarity=0.271  Sum_probs=229.6

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee----eEeeeC---CccEEEEEECC-CCCEEEEeeCCCcEEEEeCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLP---CAWVMTCAFSP-TGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~  139 (388)
                      ....+|+.+++-..++.++.. .++||.+......    ..+...   ...+..+.|.. +.++||+++.+|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            356678888998889888864 7888876543221    111111   12355677865 56899999999999999998


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      ...    ..+....+..|...++++.|++...++|++|+.||.|++||++......++     .+....|..+.|+|..+
T Consensus       119 k~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-----~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  119 KSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-----RSNSESIRDVKFSPGYG  189 (839)
T ss_pred             ccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-----cccchhhhceeeccCCC
Confidence            631    223556788999999999999999999999999999999999999888888     67889999999999999


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      +.|+++...|.+++||+|.+.++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+........    ...+
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----Tiap  265 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----TIAP  265 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----ecce
Confidence            999999999999999999999999999999999999999999999999999999999999875544333222    2346


Q ss_pred             eEEEEecCCCC-EEEEEec--CCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEE
Q 016522          300 VTSIAFSISGR-LLFAGYS--NGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV  369 (388)
Q Consensus       300 i~~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~i  369 (388)
                      +.++.|-|... .|++++.  |-.|+|||++..-.. .++    ..|...++.++|.. |...|.+++.||.|..
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~----~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF----LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceee----eccCccccceeccCCCceeeEeecCccHHHH
Confidence            99999999887 4555543  668999999765433 444    78999999999976 5678999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-31  Score=226.79  Aligned_cols=259  Identities=16%  Similarity=0.288  Sum_probs=222.7

Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEee
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGG  128 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  128 (388)
                      -.|+...........-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|.  +..+.+|+
T Consensus       200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  200 YLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             EEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec
Confidence            3466665555555555588999999999999999999999999999999999999998 99999999998  77899999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .++.|..+|++....      ....+.+|...|..+.|++++ .++++|+.|+.+.|||.........+     ..|...
T Consensus       278 r~~~I~~~dvR~~~~------~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aA  345 (484)
T KOG0305|consen  278 RDGKILNHDVRISQH------VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTF-----TEHTAA  345 (484)
T ss_pred             CCCcEEEEEEecchh------hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEE-----ecccee
Confidence            999999999998552      222488999999999999997 78999999999999999888888888     799999


Q ss_pred             eEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe--eCCCcEEEEECCCCce
Q 016522          209 VLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~  284 (388)
                      |.+++|+|....+||+|+  .|+.|++||..++ ..+.... ..+.|..|.|++..+-|+++  ..++.|.||+..+.+.
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence            999999999999999964  6999999999977 5555554 46789999999988777764  4577899999999877


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      +..+..     |...|..++++|||..+++|+.|.++++|++-..
T Consensus       424 ~~~l~g-----H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  424 VAELLG-----HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeecC-----CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            777744     4556999999999999999999999999998654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=214.04  Aligned_cols=253  Identities=23%  Similarity=0.296  Sum_probs=214.4

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC-CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ...+.|..|+|||++|++|+.||.|.||+..+++-. .-.+.....+.-+...|.|+.|+.+. .++++|+.||.|++|.
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWR  291 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEE
Confidence            355789999999999999999999999999987632 12233334455678999999999986 6899999999999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (388)
                      +++|.+++.|.    ..|...|+|+.|+. ++..+++++.|.++++--+..+ +.++.+.+|.+.|+...|.++|.++++
T Consensus       292 i~tG~ClRrFd----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  292 IETGQCLRRFD----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EecchHHHHhh----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEE
Confidence            99999999884    58999999999998 7778889999999999999988 899999999999999999999999999


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (388)
                      ++.||+|++|+..+.+++.++....   ...+|..+..-|.+. .++++...++|+|.++ .|+.+.++..- +...+..
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSG-kREgGdF  440 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSG-KREGGDF  440 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccC-CccCCce
Confidence            9999999999999999998887643   344688887777654 8888888899999997 46666666432 2334556


Q ss_pred             eEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          347 TCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       347 ~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .+.+.+|.|.++...+.|+.++-|.+.
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEee
Confidence            677889999999999999999988753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.7e-32  Score=202.89  Aligned_cols=248  Identities=19%  Similarity=0.282  Sum_probs=211.5

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      ..++.|...+.+++|+.+|..|++|+.|+.+.+|+++...     ........+|.+.|-.++|+|..+..+++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            4456788889999999999999999999999999998743     23445667899999999999998899999999999


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      |++||++.+++....      .....=.-+.|+| ++.++++++.|..|.+.|.++. +.....+ ....+.-++|+.++
T Consensus        89 ir~wd~r~~k~~~~i------~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~n  159 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARI------ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSN  159 (313)
T ss_pred             EEEEEeccCcEEEEe------eccCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCC
Confidence            999999999999887      2333445678999 8889999999999999999876 4443333 44567889999888


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      ++++.....|+|.|......+++..+..+.     ....|+.|+|+|+++|+|+.|-.+.+||+...-++..+    ..+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~-----snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----sRl  230 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHP-----SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI----SRL  230 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCC-----cceEEEEECCCCceEeeccccceeeccChhHhhhheee----ccc
Confidence            888888888999999999888888886544     44899999999999999999999999999988888877    688


Q ss_pred             CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          343 EGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .-+|..+.|+.||++||+|+.|..|-|=...
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecc
Confidence            9999999999999999999999999775443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-31  Score=203.37  Aligned_cols=266  Identities=21%  Similarity=0.299  Sum_probs=215.3

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC--EEEEeeCCCcE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACGGLDSVC  133 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i  133 (388)
                      .+.+...+.+|.++|++++.+  +.++|+||.|-+|+|||+.+......+-.|.+.|+++.|.+.-.  .|++|+.||.|
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            456678899999999999985  77999999999999999999999999999999999999998765  89999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      .+|+...       +.....+++|.+.|+.++.+|.+ .+.++.+.|+.++.||+-+|+.-...+      .....+.+.
T Consensus       110 ~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~------L~~~at~v~  175 (362)
T KOG0294|consen  110 IIWRVGS-------WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLN------LKNKATLVS  175 (362)
T ss_pred             EEEEcCC-------eEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeec------cCCcceeeE
Confidence            9999876       45888999999999999999987 788899999999999999988766653      223344599


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      |+| .+.+|+.+..+ .|-+|.+... .....+. ....+.++.|. ++..|++|+.|+.|.+||..+..+...+..+. 
T Consensus       176 w~~-~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~-  249 (362)
T KOG0294|consen  176 WSP-QGDHFVVSGRN-KIDIYQLDNA-SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE-  249 (362)
T ss_pred             EcC-CCCEEEEEecc-EEEEEecccH-hHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch-
Confidence            998 77777777755 5889998866 4433333 22456777776 67789999999999999999877777775433 


Q ss_pred             CCCCCCeEEEEe--cCCCCEEEEEecCCcEEEEEcccc-----eEEeeccCCCCCcCCCeeEEEEC
Q 016522          294 ENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       294 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                          ..|-.+.+  .|++.+|+++++||.|++||+...     +.+..+     ....+++|+...
T Consensus       250 ----~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~-----n~~~RltCl~~~  306 (362)
T KOG0294|consen  250 ----NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL-----NTNVRLTCLRVK  306 (362)
T ss_pred             ----hheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe-----ecCCccceeeeh
Confidence                35777774  567889999999999999998765     344443     225567777654

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.8e-30  Score=228.52  Aligned_cols=245  Identities=16%  Similarity=0.186  Sum_probs=185.9

Q ss_pred             CCCCcccCCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC--------eeeEeeeCCccEEEEE
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ--------KTHAIKLPCAWVMTCA  116 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~  116 (388)
                      ......|++.....+..+.+|.++|.+++|+|+ +++|++|+.||+|++||+.++.        .+..+..|...|.+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            344556776666788899999999999999996 7899999999999999997642        3346778999999999


Q ss_pred             ECCCCCE-EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE
Q 016522          117 FSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS  195 (388)
Q Consensus       117 ~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  195 (388)
                      |+|++.. +++++.|+.|++||+.++.       ....+. |...|.+++|+|+| .+|++++.|+.|++||++++..+.
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~-------~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEK-------RAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCc-------EEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEE
Confidence            9999876 4688999999999998754       233333 56789999999997 678999999999999999998888


Q ss_pred             EeecccccCCccCeEEEE-----eeCCCCcEEEEeeCCC----ceEEEECCCCCcceEEEeccc--CCeeEEEEccCCCE
Q 016522          196 VFGGEFQSGHTADVLSVS-----ISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNR  264 (388)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~  264 (388)
                      .+     ..|.+.+.+..     |++ ++.++++++.|+    .|++||++....++..+..+.  +.+...-..+++.+
T Consensus       204 tl-----~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l  277 (568)
T PTZ00420        204 SF-----HIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI  277 (568)
T ss_pred             EE-----ecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence            77     57776554333     335 667788877664    799999997656666554322  33333333446889


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      +++|+.|+.|++|++..+.. ..+..   .....+..+++|.|..
T Consensus       278 ~lsGkGD~tIr~~e~~~~~~-~~l~~---~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSLGSI-RKVNE---YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEECCCeEEEEEccCCcE-Eeecc---cccCCCccceEEcccc
Confidence            99999999999999987642 22221   1233467889999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.1e-33  Score=217.43  Aligned_cols=269  Identities=20%  Similarity=0.306  Sum_probs=229.9

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      .+++.++.+..|+.....+..+|++|.+.|..+++..  ..+++++.|.+|+.|.++. .+..++.+. ..+..+.-+..
T Consensus        83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~  158 (433)
T KOG0268|consen   83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRK  158 (433)
T ss_pred             hccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccc
Confidence            6677889999999999999999999999999999987  5789999999999999765 355555544 34777777777


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      +..++++|.  .|.|||.+...       +...+.-....|.++.|+|....+|++++.|+.|.+||++.+.++...   
T Consensus       159 ~~~FaTcGe--~i~IWD~~R~~-------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV---  226 (433)
T KOG0268|consen  159 NSVFATCGE--QIDIWDEQRDN-------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV---  226 (433)
T ss_pred             cccccccCc--eeeecccccCC-------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee---
Confidence            888999876  49999997644       456666667889999999998888999999999999999999888776   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                         .....-+.|+|+| +...|++|++|..++.||++....++....+|.+.|.++.|+|.|+-+++||.|.+|+||..+
T Consensus       227 ---i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  227 ---ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ---eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence               3344567899999 888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                      .+.....+....    ...|.++.||.|.+|+++|+.|+.|++|...-.+.+.
T Consensus       303 ~~~SRdiYhtkR----Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  303 HGHSRDIYHTKR----MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             CCcchhhhhHhh----hheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            887665554322    2259999999999999999999999999876554443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.9e-31  Score=226.15  Aligned_cols=302  Identities=18%  Similarity=0.266  Sum_probs=240.3

Q ss_pred             CceeeeccccccCCeeEEEeCCC-----------CCeEEEEeCCCcEEEEECCCCCeeeEee------------------
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSE-----------RNRIVSASQDGRLIVWNALTSQKTHAIK------------------  106 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~-----------~~~l~t~~~dg~v~iwd~~~~~~~~~~~------------------  106 (388)
                      ....++.+.-|...|+.+.--|.           ...++|++.|++|++||+..+..-..+.                  
T Consensus       358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~  437 (1080)
T KOG1408|consen  358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ  437 (1080)
T ss_pred             cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence            33444556668888888876662           1358899999999999986532111110                  


Q ss_pred             -------------------eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522          107 -------------------LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus       107 -------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                                         .....+.+++.+|+|++|++|..-|.++||++....       ....+..|...|.|+.|+
T Consensus       438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeec
Confidence                               012458999999999999999999999999998743       566788999999999998


Q ss_pred             eC--CCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcce
Q 016522          168 PD--EDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAV  243 (388)
Q Consensus       168 ~~--~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  243 (388)
                      ..  +..+|++++.|..|.+||.... ..+.++     .+|...|+++.|...+ ...+++++.|..|.+--.+.. ...
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl-----d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g  584 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL-----DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSG  584 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccchhhhh-----cccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCc
Confidence            63  3467999999999999998765 334444     7899999999998633 256888888887754433322 222


Q ss_pred             EEEecc-----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          244 RTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       244 ~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      ..+..|     ...+..++..|..+++++++.|..|+|||+.+++..+.+...+.  +.+....+...|.|.|+++.+.|
T Consensus       585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--HEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc--CCCceEEEEECCCccEEEEeecC
Confidence            223222     34678899999999999999999999999999999999977654  33457889999999999999999


Q ss_pred             CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      .++.++|..+++++..+    .+|...|+.+.|.+|.+.|++.+.||.|.||.....+
T Consensus       663 ktl~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  663 KTLCFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             CceEEEEeccchhhhhh----cCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence            99999999999999998    8999999999999999999999999999999876544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.3e-30  Score=199.81  Aligned_cols=292  Identities=22%  Similarity=0.301  Sum_probs=226.8

Q ss_pred             ccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCe----------ee-----EeeeCCccEEEEEECC-CCCEEEE
Q 016522           64 QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK----------TH-----AIKLPCAWVMTCAFSP-TGQSVAC  126 (388)
Q Consensus        64 ~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~----------~~-----~~~~~~~~v~~~~~~~-~~~~l~~  126 (388)
                      +.|.+.|+++...+ .|+++++|+.||.|.+||++....          ..     .-..|.-.|..+.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            34889999999988 788999999999999999965431          11     1134667799999998 6678888


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC--CceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      ++.|.+++|||.++.+       ....+ ...+.|.+-+++|-.  .-++++|..|-.|++.|+.+|.....+     .+
T Consensus       120 sSFDhtlKVWDtnTlQ-------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sG  186 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQ-------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SG  186 (397)
T ss_pred             ccccceEEEeecccce-------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----cc
Confidence            9999999999999854       22222 233556666666632  245778888899999999999999999     89


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--------------ecccCCeeEEEEccCCCEEEEeeC
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~  270 (388)
                      |...|.++.|+|...-.|++|+.||.|++||++....+...+              ..|.+.++.++|..++.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            999999999999888899999999999999998664444333              356678999999999999999999


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCC--CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      |..+++|+..+|+...........+.  ...+. +. +.+...++.--.++.+.++++-.+..+..+    ..|-..|.|
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c  340 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINC  340 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeE
Confidence            99999999988765433222111110  11111 22 233344444445689999999999999998    789889999


Q ss_pred             EEECCCCCeEEEccCCCeEEEeccce
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .++-|+-+...+|..|+.+..|.+..
T Consensus       341 ~~~~~~fq~~~tg~~d~ni~~w~p~l  366 (397)
T KOG4283|consen  341 AAYRPDFEQCFTGDMNGNIYMWSPAL  366 (397)
T ss_pred             EeecCchhhhhccccCCccccccccc
Confidence            99999999999999999999999843

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-30  Score=200.45  Aligned_cols=269  Identities=17%  Similarity=0.244  Sum_probs=216.0

Q ss_pred             eEEEEeCCCcEEEEECCCC------------CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           81 RIVSASQDGRLIVWNALTS------------QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .|++|+....|.-+++...            .++..+..|.+.+++++.  ++.++++|+.|-+|+|||+....      
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~------   74 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK------   74 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh------
Confidence            3566776666665654321            235566789999999998  48999999999999999999855      


Q ss_pred             ceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                       ....+..|.+.|+++.|.+.- ...|++|+.||.|.+|+...-..+..+     ..|...|+.++++| .+++.++.+.
T Consensus        75 -qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-----K~H~~~Vt~lsiHP-S~KLALsVg~  147 (362)
T KOG0294|consen   75 -QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-----KAHKGQVTDLSIHP-SGKLALSVGG  147 (362)
T ss_pred             -hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----cccccccceeEecC-CCceEEEEcC
Confidence             456677899999999999863 236999999999999999998888888     89999999999999 8889899999


Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      |+.+++||+-.++.....--.+  ..+.+.|+|.|.+++.++.+ .|-+|.+.+......+...      ..+.++.|. 
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~------~r~l~~~~l-  217 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP------KRILCATFL-  217 (362)
T ss_pred             CceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc------ccceeeeec-
Confidence            9999999998774332222222  23449999999999988875 5899999887666555332      135666665 


Q ss_pred             CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE--CCCCCeEEEccCCCeEEEeccceeeee
Q 016522          308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKVSLHYYIFVL  378 (388)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~iw~~~~~~~~  378 (388)
                      ++.+|++|..|+.|.+||..+..+...+    .+|..+|.++.+  .|++.+|+|++.||.|+||+.......
T Consensus       218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  218 DGSELLVGGDNEWISLKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             CCceEEEecCCceEEEeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence            5678999999999999999998888888    899999999984  467899999999999999998876433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=100.00  E-value=2e-31  Score=218.37  Aligned_cols=289  Identities=19%  Similarity=0.345  Sum_probs=237.5

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEee--eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      +.+.+|. |..-|.++..+...+++.||+. |.|+|||+....   ++..+.  .....|+++...|||+.|++|+.-.+
T Consensus       411 rq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast  488 (705)
T KOG0639|consen  411 RQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST  488 (705)
T ss_pred             Hhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence            3444444 8899999999999999999885 789999986532   233332  24567999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +.|||+..+...     +...+....-....++.+||. ++.+++..||.|.|||+.+...++.+     .+|...+.||
T Consensus       489 lsiWDLAapTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf-----qGhtDGascI  557 (705)
T KOG0639|consen  489 LSIWDLAAPTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASCI  557 (705)
T ss_pred             eeeeeccCCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc-----cCCCCCceeE
Confidence            999999985521     223333334456778999985 78889999999999999999999999     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      .+++ ++..|-+|+-|.+|+.||++.+. .+... ...+.|.++..+|++.++++|-.++.+.+......+..+..    
T Consensus       558 dis~-dGtklWTGGlDntvRcWDlregr-qlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh----  630 (705)
T KOG0639|consen  558 DISK-DGTKLWTGGLDNTVRCWDLREGR-QLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH----  630 (705)
T ss_pred             EecC-CCceeecCCCccceeehhhhhhh-hhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeec----
Confidence            9998 88999999999999999999873 33332 24678999999999999999999999999887654443322    


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                        .+.+.|.++.|.+.|+++++.+.|+.+..|...-|..+...     ...+.|.++.++.|.++|+||+.|....||..
T Consensus       631 --lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  631 --LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             --ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence              23446999999999999999999999999999988888775     45678999999999999999999999998865


Q ss_pred             c
Q 016522          373 Y  373 (388)
Q Consensus       373 ~  373 (388)
                      .
T Consensus       704 ~  704 (705)
T KOG0639|consen  704 I  704 (705)
T ss_pred             e
Confidence            4

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=7.7e-31  Score=212.28  Aligned_cols=262  Identities=22%  Similarity=0.280  Sum_probs=208.3

Q ss_pred             eCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC---CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          107 LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       107 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      .|.+.|..+.+-|+. ..+++++..+.+.|||........   ++..+...+.+|...-.+++|++.....+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            477788899998865 556667888999999998754322   1445566888999988899999988888999999999


Q ss_pred             EEEEecCCCceE--EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC-CCcceEEEecccCCeeEEEEc
Q 016522          183 CVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       183 v~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      |++||+......  .........+|...|..++|++.+..+|++++.|+.+.|||+|. ..++.....+|.++|+|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999865431  01111122789999999999999999999999999999999996 336777888999999999999


Q ss_pred             c-CCCEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe---
Q 016522          260 P-DGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL---  333 (388)
Q Consensus       260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---  333 (388)
                      | ++..||+|+.|++|.+||+|+.... ..+     ..+...|..+.|+|... .||+++.|+.+.+||+..-....   
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTF-----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceec-----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9 7788999999999999999986552 233     34455699999999866 88999999999999986422211   


Q ss_pred             -------eccCCCCCcCCCeeEEEECCCC-CeEEEccCCCeEEEeccc
Q 016522          334 -------NLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       334 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~  373 (388)
                             .+...-.+|...|..+.|+|+. -.|++.+.|+.+.||.+.
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                   1111226899999999999965 467889999999999876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-30  Score=209.10  Aligned_cols=287  Identities=16%  Similarity=0.240  Sum_probs=233.4

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD  143 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~  143 (388)
                      .+.|++|.|+|....|++|+.||+++||.+.  ....++.+.....+|.+.+|.|+|. .+++++.....+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3689999999999999999999999999874  3556788888889999999999998 899999999999999988552


Q ss_pred             CCCCCceeEEeccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          144 KDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       144 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                      .     ......++ ...+.....++++ ++|+..+..|.|.+....+++.+..+      ...+.+..++|+. ++..|
T Consensus       293 ~-----k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~------KieG~v~~~~fsS-dsk~l  359 (514)
T KOG2055|consen  293 T-----KLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF------KIEGVVSDFTFSS-DSKEL  359 (514)
T ss_pred             c-----cccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee------eeccEEeeEEEec-CCcEE
Confidence            2     22223333 2456677888986 68999999999999999999988887      5678899999997 77888


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCC------CceeeEeeeccCCC
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT------GHQLQVYYQQHGEN  295 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~  295 (388)
                      ++++.+|.|.+||++.. .++..+....+ .-++++.++++.+||+|+..|.|.|||..+      .+++..+.     +
T Consensus       360 ~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-----N  433 (514)
T KOG2055|consen  360 LASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-----N  433 (514)
T ss_pred             EEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----h
Confidence            88888999999999988 77777664322 235677778999999999999999999654      23333332     2


Q ss_pred             CCCCeEEEEecCCCCEEEEEec--CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          296 EIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      -...|+++.|+|++..||.++.  +..+++-.+.+......+... ...-+.|+||+|+|.|.+|+.|..+|.|.+|...
T Consensus       434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            3345999999999999988876  568999999888888777543 4445679999999999999999999999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=4.1e-30  Score=206.81  Aligned_cols=259  Identities=20%  Similarity=0.305  Sum_probs=218.2

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (388)
                      ....|+-...+.+..|+||.-.|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||+++
T Consensus       242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA  321 (506)
T KOG0289|consen  242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA  321 (506)
T ss_pred             ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence            45567777788899999999999999999999999999999999999998888888889999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +.||...+.|++++.       ......  ...-.+++.+|+||| .+|.+|..||.|+|||+.++.....|     .+|
T Consensus       322 s~d~~w~Fsd~~~g~-------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~F-----pgh  388 (506)
T KOG0289|consen  322 SNDGTWAFSDISSGS-------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKF-----PGH  388 (506)
T ss_pred             cCCceEEEEEccCCc-------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccC-----CCC
Confidence            999999999999865       222222  223458999999997 78999999999999999999988888     789


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEeeCCCcEEEEECC--CC
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR--TG  282 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~  282 (388)
                      .++|..++|+. +|.+|++++.|+.|++||+|.. +.+.++.... ..+.++.|.+.|.+|+.++.|=+|++++-.  ..
T Consensus       389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             CCceeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            99999999997 9999999999999999999987 5666655432 369999999999999999887666666633  23


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      .++..+..     +.+..+.+.|.....++++++.|..++++.+
T Consensus       467 ~~~~~~~~-----~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  467 TEIKELAD-----HSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeehhhh-----cccccceeeecccceEEeeccchhheEEeec
Confidence            33433322     3345789999999999999999999888754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=4.4e-31  Score=196.97  Aligned_cols=258  Identities=19%  Similarity=0.244  Sum_probs=206.6

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF  136 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  136 (388)
                      .-..|++.|.++...-.|++|||++.|++|+|+.....   ..+.++.+|.++|..++|..  .|.+|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34579999999999999999999999999999998764   45788999999999999965  89999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      .-+.+.     +........|...|++++|.|.+ +-.|++++.||.|.|.+.+....-.  ...+...|.-.+++++|.
T Consensus        86 ke~~g~-----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~--t~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   86 KEENGR-----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT--TSKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             ecCCCc-----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc--chhhhhccccccceeeec
Confidence            988753     44556677899999999999964 2458899999999999987651111  111226899999999999


Q ss_pred             CCC--C-----------cEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCC----CEEEEeeCCCcEEEE
Q 016522          216 GSN--S-----------RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLF  277 (388)
Q Consensus       216 ~~~--~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~  277 (388)
                      |..  +           +.|++|+.|..|+||+..... ...+.+.+|.+.|+.++|.|.-    .+|+++++||++.||
T Consensus       159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            841  1           569999999999999998752 3345589999999999999943    579999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ..+...........  ......+..+.||..|+.|++++.|+.|.+|.-+.
T Consensus       239 t~~~e~e~wk~tll--~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLL--EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCccCccccccc--ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            87633222111111  12334589999999999999999999999997543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=2.4e-30  Score=230.50  Aligned_cols=258  Identities=19%  Similarity=0.263  Sum_probs=216.1

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC------------------CCeeeEeeeCCccEEEEEEC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------------SQKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~  118 (388)
                      .+.+.+...|.+.|+|+.|+|||.+||+|+.|+.|.||....                  .+....+.+|...|..++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            455667788999999999999999999999999999998762                  12567788999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      |++.+|++++.|++|.+|+..+.       .....+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.....+.
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             CCccEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeec
Confidence            99999999999999999999874       3788999999999999999997 789999999999999987766666664


Q ss_pred             cccc-cCCccCeEEEEeeCCCCcEEEEeeC----CCceEEEECCCCCcceEEEecccCCeeEEEEccC-----CC-----
Q 016522          199 GEFQ-SGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GN-----  263 (388)
Q Consensus       199 ~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~-----  263 (388)
                      ..+. ......+..+.|+| ++.+|++...    -..+.|.+-.+. +.-..+-+|..++.++.|+|.     .+     
T Consensus       211 ~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             cchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence            4332 34455678999999 8899988543    236788887655 677788999999999999981     12     


Q ss_pred             -------EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          264 -------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       264 -------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                             .+|+|+.|++|.||.....+++........    ..|..++|+|||..|++++.||+|.++.+..
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~----~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN----KSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc----CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                   678999999999999987777765543322    3599999999999999999999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=8.1e-31  Score=209.52  Aligned_cols=259  Identities=22%  Similarity=0.332  Sum_probs=216.7

Q ss_pred             cCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           44 SQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      ..+..+..|+....+  ...+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++.+|...|+++.|....
T Consensus       194 g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~  273 (459)
T KOG0288|consen  194 GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH  273 (459)
T ss_pred             chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc
Confidence            345566677766555  788999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ..+++|+.|.+|+.||+....       +.+... ....+.+++..+   ..+++|..|++|++||+++.......    
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~-------C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv----  338 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAY-------CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSV----  338 (459)
T ss_pred             cceeeccccchhhhhhhhhhh-------eecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEe----
Confidence            779999999999999998743       222221 224455566553   46899999999999999999988887    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                        ...+.|+++..++ ++..+++++.|.++.+.|+++. .....+.+.    ....+.+.|||++.|+++|+.||.|+||
T Consensus       339 --~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  339 --PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             --ecCcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEE
Confidence              3445999999998 7788888899999999999987 555555432    2348899999999999999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                      ++.+++..........+   ..|++++|+|.|..|++++.++.+.+|
T Consensus       415 ~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  415 SVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence            99999988877654332   269999999999999999999999998

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.3e-29  Score=182.83  Aligned_cols=258  Identities=21%  Similarity=0.316  Sum_probs=203.5

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--CC---eeeEeeeCCccEEEEEECC----CCCEEEEee
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQ---KTHAIKLPCAWVMTCAFSP----TGQSVACGG  128 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--~~---~~~~~~~~~~~v~~~~~~~----~~~~l~~~~  128 (388)
                      ..++.-+.|++.|.|.+|+|+|.+|++|+.|.+|++.-+..  .+   ....+..|.+.|..++|-.    .+..|++++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence            44566778999999999999999999999999999875533  22   2345778999999999954    245566654


Q ss_pred             C-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC--C
Q 016522          129 L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--H  205 (388)
Q Consensus       129 ~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~  205 (388)
                      . |..|++-|...+.       ....+.+|.+-|.++--..  +.++++|+.|.+|++||++-..++..+...+..+  .
T Consensus       160 agdc~iy~tdc~~g~-------~~~a~sghtghilalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQ-------GFHALSGHTGHILALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE  230 (350)
T ss_pred             CCcceEEEeecCCCC-------cceeecCCcccEEEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence            3 4556666665544       5678899999998764333  4689999999999999999998888875443222  2


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      ...|.++++.| .+.+|++|-.|....+||++.+ +.++.+..|...|.++.|+|...++++++.|..|++-|+... ..
T Consensus       231 ssavaav~vdp-sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la  307 (350)
T KOG0641|consen  231 SSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LA  307 (350)
T ss_pred             cceeEEEEECC-CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hh
Confidence            36789999999 8999999999999999999988 999999999999999999999999999999999999998642 22


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      ..+.......+...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       308 ~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  308 HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            211111112344457888999999889999999999999763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.8e-29  Score=218.88  Aligned_cols=280  Identities=16%  Similarity=0.266  Sum_probs=229.7

Q ss_pred             ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC-CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      .+|+..-+.++|.|+|.+|++++.||.|++|+.... +...++..+...|.+++-.  +.+|++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            368999999999999999999999999999998766 5555555567777777654  4599999999999999998865


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                             ....+....-++.+++++.+| .+++.|+.|-.|++.+..+......+     .+|..+|.++.++| ++++|
T Consensus        88 -------~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p-~~~fL  153 (933)
T KOG1274|consen   88 -------EDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDP-KGNFL  153 (933)
T ss_pred             -------ccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcC-CCCEE
Confidence                   223444556789999999987 68999999999999999999888888     89999999999999 99999


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEec--------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHG--------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      |+.+.||.|++||+..+ .....+.+        ....+..++|+|++..++..+.|+.|++|+..++.....+....  
T Consensus       154 Avss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~--  230 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL--  230 (933)
T ss_pred             EEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc--
Confidence            99999999999999876 44333322        13457789999998889999999999999999988887776533  


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                       ....++.+.|+|+|+|||+++.||.|.|||..+-+.        ......|.+++|.|++.-+-.-...|...+|-
T Consensus       231 -~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  231 -SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             -cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence             233489999999999999999999999999987221        23456899999999988766655666666654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.3e-29  Score=211.88  Aligned_cols=308  Identities=17%  Similarity=0.239  Sum_probs=232.3

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE--EE
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS--VA  125 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~  125 (388)
                      .|....|.+..+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|.++.++.... .|.|++|+|.++.  ||
T Consensus       381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             ChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEE
Confidence            34456667778888999999999999999999999999999999999999999999988765 5999999997643  44


Q ss_pred             EeeCCCcEEEEeCCCCCCC----------------C--------------CCCceeEEecccccceEEEEEEeCCCceEE
Q 016522          126 CGGLDSVCSIFNLNSPTDK----------------D--------------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLI  175 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~----------------~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (388)
                      ++ ....+.+.+..-+...                .              ....-......|...|..+.|+..|+ +|+
T Consensus       460 vA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-Yla  537 (733)
T KOG0650|consen  460 VA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLA  537 (733)
T ss_pred             EE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEE
Confidence            43 3334555554322100                0              00001234446788999999999984 677


Q ss_pred             EeeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522          176 TSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (388)
Q Consensus       176 ~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (388)
                      +...+   ..|.|+++........|     ....+.+.++.|+| ...+|++++ ...|++||+... ..++.+......
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF-----~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~kw  609 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPF-----RKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSKW  609 (733)
T ss_pred             EeccCCCcceEEEEecccccccCch-----hhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHH-HHHHHHhcCCee
Confidence            65543   46999999887766666     56678899999999 555666665 468999999875 667777666778


Q ss_pred             eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE------c
Q 016522          253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD------T  326 (388)
Q Consensus       253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d------~  326 (388)
                      |..++.+|.|..|+.|+.|+.+..||+.-..........    |...+++++|++.-.++++|+.||.+.||.      +
T Consensus       610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~----H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL----HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh----hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence            999999999999999999999999999866443332222    223599999999999999999999999985      2


Q ss_pred             ccceEEeeccCCCCCcCCC----eeEEEECCCCCeEEEccCCCeEEEec
Q 016522          327 LLAKVVLNLGSLQNSHEGR----ITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ..+..+..+..+ .+|...    |..+.|+|....|+++|.||+|++|.
T Consensus       686 ~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  686 LQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             hcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            222222222211 667655    88999999999999999999999983

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.9e-30  Score=212.08  Aligned_cols=268  Identities=20%  Similarity=0.234  Sum_probs=201.8

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      .....++.|...|.++++.|.|..|++|+.|..|++||+.........+  ..........|.++.|++.|+ .|++.+.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~ys~Tg~-~iLvvsg  234 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF--RQLQPCETHQINSLQYSVTGD-QILVVSG  234 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh--hccCcccccccceeeecCCCC-eEEEEec
Confidence            3445667788889999999999999999999999999998754322222  222234456799999999985 4666666


Q ss_pred             CCeEEEEecCCCceEEEeec-------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----
Q 016522          180 DQTCVLWDITTGLRTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----  247 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  247 (388)
                      ....+++|-...........       ....+|...++|.+|+|.+...|++++.||++++||+...+.....+.     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            67899999654443333221       123689999999999999999999999999999999998765555554     


Q ss_pred             cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +..-+++.++|+|++++||+|+.||.|.+|+.........+...........|+++.||++|++|++-+.|+++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            23347899999999999999999999999998665444443333223334469999999999999999999999999998


Q ss_pred             cce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------CCeEEEecc
Q 016522          328 LAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKVSLH  372 (388)
Q Consensus       328 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~  372 (388)
                      ..+ ++.....+  ....+-+.++|+|+.++|++|..      .|.+.+|+.
T Consensus       395 q~kkpL~~~tgL--~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  395 QFKKPLNVRTGL--PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             ccccchhhhcCC--CccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            754 33333211  12235578999999999999863      467777764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.7e-29  Score=190.56  Aligned_cols=280  Identities=16%  Similarity=0.267  Sum_probs=208.5

Q ss_pred             ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEEe
Q 016522           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~  137 (388)
                      .+|.+-|.|+.|.+.|+++||++.|++|+|||..+.    ......+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            479999999999999999999999999999996443    35566788999999999955  689999999999999999


Q ss_pred             CCCCCC--CCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecc--c------ccCCc
Q 016522          138 LNSPTD--KDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGE--F------QSGHT  206 (388)
Q Consensus       138 ~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~------~~~~~  206 (388)
                      -.....  ....+....++....+.|+++.|.|.. +-.+++++.||.++||+......+......  +      +..+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            743222  223455667778888999999999963 245899999999999987665433332211  1      12466


Q ss_pred             cCeEEEEeeCC--CCcEEEEeeCC-----CceEEEECCCCC---cceEEEecccCCeeEEEEccC----CCEEEEeeCCC
Q 016522          207 ADVLSVSISGS--NSRMFVSGSCD-----STARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDG  272 (388)
Q Consensus       207 ~~i~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg  272 (388)
                      .+..|+.|+|.  ...+|++|+.+     +.+.||......   ..+..+.+|..+|+.|+|.|+    -.+||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            77889999873  35678888866     588999876553   245567789999999999994    45799999999


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                       |+||.+........- .   .     +    ..|+        .-+.   +   .-+.+..+    ..|.+.|..+.|+
T Consensus       250 -v~I~~v~~~~s~i~~-e---e-----~----~~~~--------~~~~---l---~v~~vs~~----~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEE-E---E-----V----LAPD--------LMTD---L---PVEKVSEL----DDHNGEVWRVRWN  297 (361)
T ss_pred             -EEEEEEeeccchhhh-h---c-----c----cCCC--------Cccc---c---ceEEeeec----cCCCCceEEEEEe
Confidence             999998743211100 0   0     0    0111        0011   1   12334445    7899999999999


Q ss_pred             CCCCeEEEccCCCeEEEecccee
Q 016522          353 ADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       353 ~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      -.|..|++.|.||.|++|...|.
T Consensus       298 mtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  298 MTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             eeeeEEeecCCCceeeehhhhhh
Confidence            99999999999999999997763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.4e-29  Score=193.72  Aligned_cols=290  Identities=11%  Similarity=0.154  Sum_probs=220.2

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...-..+..|..+|++++|+++|+.|++++.|..|.+||+..+.       
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-------   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-------   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence            7899999999999999999999999999999889999999999999999999999999999999999999865       


Q ss_pred             eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (388)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  229 (388)
                      +...+. ..++|+.+.|+|...+..++.-.+..-.+-++..+.. ..++............+..|.+ .++++++|...|
T Consensus        99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKG  175 (405)
T KOG1273|consen   99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKG  175 (405)
T ss_pred             ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcc
Confidence            333332 4688999999998777666665555555555554221 1121111011111222334666 899999999999


Q ss_pred             ceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee------eEeeeccCCCCCCCeEE
Q 016522          230 TARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGENEIPHVTS  302 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~i~~  302 (388)
                      .+.++|..+. +++..++... ..|..+.++..|+.|+..+.|..|+.|+++.--..      .........-....-.+
T Consensus       176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            9999999987 7777777655 67899999999999999999999999998631111      00000000011123567


Q ss_pred             EEecCCCCEEEEEecC-CcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          303 IAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       303 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ++|+.+|.|+++|+.. ..++||....|..+..+    .+.. ....++.|+|-...+++- ..|.|+||.....
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL----hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL----HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeee----cCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence            8999999999888753 47999999999999998    4555 567899999988888877 7899999986543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.5e-30  Score=217.19  Aligned_cols=321  Identities=19%  Similarity=0.244  Sum_probs=255.0

Q ss_pred             cccccCCCCCcccCCCCce------eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCcc
Q 016522           40 GYSRSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAW  111 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~  111 (388)
                      .+.+.+++....|+.....      ....++.|.+-|+.++...+++.|+++|.|-+|++|+...+  -+..++..|...
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY  119 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY  119 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence            5777888888888664332      47889999999999999999999999999999999999877  577888999999


Q ss_pred             EEEEEE-CCCCCEEEEeeCCCcEEEEeCCCCCC----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          112 VMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       112 v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      |.|+++ .++...+|+||-|+.|.+||++.+..    .....+......++..+|.+++.++.| ..+++|+..+.+++|
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLW  198 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEe
Confidence            999999 88899999999999999999997632    011122222223889999999999987 789999999999999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      |.++++.+..+     .+|...|..+..++ ++..+++++.||+|++||+... +++.++..|...|.++..+|+-..++
T Consensus       199 Dprt~~kimkL-----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  199 DPRTCKKIMKL-----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             ccccccceeee-----eccccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEE
Confidence            99999999888     79999999999998 8999999999999999999987 89999999999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC--------
Q 016522          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--------  338 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------  338 (388)
                      +|+.||.|..=|+++......+....     .++..+..+...+-+-+++.|+.|.-|...-...+......        
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~d-----aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~  346 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKED-----APVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSN  346 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCC-----CchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCC
Confidence            99999999999999864443333222     23666766655555577778888888864321111100000        


Q ss_pred             ------------CCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          339 ------------QNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       339 ------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                                  ......+|..-+.-.|.++++|=...|.+.+|+.-
T Consensus       347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl  393 (735)
T KOG0308|consen  347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL  393 (735)
T ss_pred             CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence                        00111234445555678899999999999999853

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.97  E-value=6e-29  Score=201.45  Aligned_cols=306  Identities=16%  Similarity=0.189  Sum_probs=229.9

Q ss_pred             CCCCceeeeccccccCCeeEEEeCCCC--CeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECC-CCCEEE
Q 016522           53 GPTDLVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSP-TGQSVA  125 (388)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~  125 (388)
                      +..........+-|.++|++++|+|..  +.+|+|..-|.|-+||+.+    ...+..+..|..+|.++.|+| +...++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            334556667778899999999999955  4888999999999999953    233556678999999999999 457899


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSG  204 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~  204 (388)
                      +.+.||+|++-|++....     ............+..+.|+.+. ..++.+..=|...+||.+++.. ...+     .-
T Consensus       252 ssSyDGtiR~~D~~~~i~-----e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~-----~l  320 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNIS-----EEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENL-----RL  320 (498)
T ss_pred             eeccCceeeeeeecchhh-----HHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhh-----hh
Confidence            999999999999987441     1222233345567778888775 4577777778999999998765 3333     56


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--c-ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--R-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-  280 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  280 (388)
                      |...|.+++++|-...+|++++.|++.+|||+|...  . ++.....|...|.+..|||.+-.|++.+.|..|+|||.. 
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence            788999999999999999999999999999998652  1 234555799999999999987779999999999999983 


Q ss_pred             ---CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE-EEECCCCC
Q 016522          281 ---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGS  356 (388)
Q Consensus       281 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~  356 (388)
                         ...+...+......+.--......|.|+..++++|-.-..|-|+|-..++.+..+.   ......|.+ ..|+|-+.
T Consensus       401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~  477 (498)
T KOG4328|consen  401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRD  477 (498)
T ss_pred             ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc---Cccccccccceeeccccc
Confidence               33344444332221111123456799999999999999999999999998888763   222224444 47999887


Q ss_pred             eEEE-ccCCCeEEEecc
Q 016522          357 ALCT-GSWDTNLKVSLH  372 (388)
Q Consensus       357 ~l~s-~~~dg~v~iw~~  372 (388)
                      .+++ ++..|.|.||.-
T Consensus       478 ~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  478 TLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ceeccCCccceEEEEec
Confidence            4444 556788888854

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-29  Score=195.89  Aligned_cols=267  Identities=24%  Similarity=0.356  Sum_probs=225.4

Q ss_pred             CCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC------CC--------------------
Q 016522           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA------LT--------------------   98 (388)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~------~~--------------------   98 (388)
                      .+.....|......|+.++.||.+.|+++.|++.+.++++++.|++-.||..      ..                    
T Consensus       168 ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~  247 (481)
T KOG0300|consen  168 ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN  247 (481)
T ss_pred             cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence            4556677999999999999999999999999999999999999999999962      10                    


Q ss_pred             --------------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522           99 --------------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (388)
Q Consensus        99 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (388)
                                    ..++..+.+|.+.|.++.|-..|+.+++++.|.+..+||++++.       +...+.+|....+.+
T Consensus       248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------~v~~LtGHd~ELtHc  320 (481)
T KOG0300|consen  248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------VVNILTGHDSELTHC  320 (481)
T ss_pred             cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-------eeccccCcchhcccc
Confidence                          01345667788999999999999999999999999999999976       788999999999999


Q ss_pred             EEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522          165 QYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  243 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (388)
                      +-+|.. .++++++.|.+.++||++.. ..+..|     .+|...|++..|.-  +..+++|+.|.+|++||+++...++
T Consensus       321 stHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF-----QGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRspl  392 (481)
T KOG0300|consen  321 STHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF-----QGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPL  392 (481)
T ss_pred             ccCCcc-eEEEEeccCceeEeccchhhcceeeee-----cccccceeEEEEec--CCceeecCCCceEEEeeeccccCcc
Confidence            999985 78999999999999999854 345556     79999999999984  4568999999999999999998888


Q ss_pred             EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcE
Q 016522          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDC  321 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i  321 (388)
                      .++. ..++++.++.+..+..|+.-..+..|++||+... .+..+.......|...|+|++|..+..  -|++++.|..+
T Consensus       393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v  470 (481)
T KOG0300|consen  393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV  470 (481)
T ss_pred             eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence            8877 4678999999988889999999999999999754 444444334455667799999986543  57788899999


Q ss_pred             EEEEccc
Q 016522          322 YVWDTLL  328 (388)
Q Consensus       322 ~i~d~~~  328 (388)
                      .-|++..
T Consensus       471 ~gW~in~  477 (481)
T KOG0300|consen  471 AGWKINT  477 (481)
T ss_pred             eeeEecc
Confidence            9998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3e-29  Score=203.27  Aligned_cols=259  Identities=21%  Similarity=0.275  Sum_probs=213.6

Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce----------eEEe-cccccceEEEEEEeCC
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV----------SRML-SGHKGYVSCCQYVPDE  170 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~-~~~~~~v~~~~~~~~~  170 (388)
                      ...+..|.-++.+++++|++++.++++.+|+|.=|++.++......++.          ...- ..|...+.+++.+++|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4556678889999999999999999999999999999987643111111          1111 4889999999999997


Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                       .+|++|+.|..|.||+.++.+.+..+     .+|.+.|.+++|-. +.+-+++++.|+.+++|++... ..+.++.+|.
T Consensus       215 -kylatgg~d~~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHq  286 (479)
T KOG0299|consen  215 -KYLATGGRDRHVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL-SYVETLYGHQ  286 (479)
T ss_pred             -cEEEecCCCceEEEecCcccchhhcc-----cccccceeeeeeec-CccceeeeecCCceEEEehhHh-HHHHHHhCCc
Confidence             78999999999999999999999998     89999999999987 7788999999999999999987 7888899999


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      +.|.+|....-++.+-+|+.|+++++|++.....+ .+...     ...+-|++|- +...+++|+.||.|.+|++...+
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~-----~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGG-----EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEecccccee-eeeCC-----CCCeeeEEEe-cccceeeccCCceEEEeeecccC
Confidence            99999998888888888889999999999543333 22222     2348888886 45688999999999999999998


Q ss_pred             EEeeccCCCCC--------cCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          331 VVLNLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       331 ~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ++.+.......        +...|++++..|...++++|+.+|.|++|....+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            88776521111        1127899999999999999999999999997765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.5e-30  Score=189.89  Aligned_cols=260  Identities=17%  Similarity=0.204  Sum_probs=204.5

Q ss_pred             eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeCCCeEE
Q 016522          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCV  184 (388)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~  184 (388)
                      ..|...|..+.....|+.|++++.|++|+|+..+....    ......+.+|.++|..++|.. .-+.+|++++.||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            45777788888888899999999999999999987542    347788999999999999965 3347899999999999


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCC--CcceEEEecccCCeeEEEEccC
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPD  261 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~  261 (388)
                      ||.-+++.-.....   ...|...+++++|.|.+ +-.|++++.||.|.+.+.+..  ....+....|.-.|++++|.|.
T Consensus        84 iWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   84 IWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             EEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            99988874332221   16899999999999844 567889999999999998765  2234456789999999999994


Q ss_pred             ---C-----------CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC----CEEEEEecCCcEEE
Q 016522          262 ---G-----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYV  323 (388)
Q Consensus       262 ---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i  323 (388)
                         |           +.|++|+.|+.|+||+..++.-....   ....|...++.++|.|.-    .+||+++.||++.|
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence               4           56999999999999999876322211   124567789999999975    38999999999999


Q ss_pred             EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      |............ +.......+..+.|+..|+.|++++.|+.|.+|.....-
T Consensus       238 wt~~~e~e~wk~t-ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  238 WTKDEEYEPWKKT-LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             EEecCccCccccc-ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence            9865321111111 114466789999999999999999999999999876643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=3.2e-27  Score=200.22  Aligned_cols=275  Identities=17%  Similarity=0.161  Sum_probs=202.8

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      ++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..++.       ....+..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~   72 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSG   72 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCC
Confidence            35788999999999999999998888876544 6789999999876 566788999999998754       33333333


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-ceEEEEC
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDT  236 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~  236 (388)
                      .. +..++|+|+++.++++++.++.|++||+.+...+..+.      ....+.+++++| ++.+++++..++ .+.+||.
T Consensus        73 ~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        73 PD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence            33 46789999985555666778999999999887766652      233467899999 778888877765 5677898


Q ss_pred             CCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCC--CCCCCeEEEEecCCCCEEE
Q 016522          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~  313 (388)
                      .+. ....... ....+.+++|+|++++|+++ ..++.|++||+.+++....+......  ........++|+|++++++
T Consensus       145 ~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       145 KTY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             CCC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence            765 3433332 23456789999999988654 46899999999998776655322111  0111245688999999865


Q ss_pred             EE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc-cCCCeEEEeccceee
Q 016522          314 AG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVSLHYYIF  376 (388)
Q Consensus       314 ~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~  376 (388)
                      ++ ..++.+.+||+.+++....+     .+...+.+++|+|+|++|+++ +.+|.|.+|+.....
T Consensus       223 ~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEVLDYL-----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEEEE-----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            54 45668999999988877654     234578999999999999886 569999999976533

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=203.41  Aligned_cols=272  Identities=19%  Similarity=0.266  Sum_probs=215.4

Q ss_pred             EeCC-CcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522           85 ASQD-GRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (388)
Q Consensus        85 ~~~d-g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (388)
                      ++.| ..+.+||+.+|....++++. ...-.++..- .+.+++++.. ...+.+|.+......       ....--.++|
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~-------~q~~v~Pg~v   84 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQV-------VQYIVLPGPV   84 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhh-------hhhcccccce
Confidence            3334 45999999999999888876 3222222221 2356666544 458999998764311       1222335789


Q ss_pred             EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---
Q 016522          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---  238 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---  238 (388)
                      .+++-+|.| .+++.|+..|.|++|.+.+|..+..+     ..|-..|+++.|+. ++.+|++|+.||.|.+|++..   
T Consensus        85 ~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   85 HALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             eeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc
Confidence            999999987 67777879999999999999999888     79999999999997 999999999999999997632   


Q ss_pred             -----CCcceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522          239 -----ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       239 -----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (388)
                           ...++..+..|.-+|+.+...+.  ..+|++++.|.++++||+..+..+..+....      .+.+++.+|.++.
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~  231 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERV  231 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccE
Confidence                 23678889999999999988764  4689999999999999999998888776543      3899999999999


Q ss_pred             EEEEecCCcEEEEEcccce----------------EEeeccCCCCCcCC--CeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          312 LFAGYSNGDCYVWDTLLAK----------------VVLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +++|+.+|.|.+.++....                .+..+    .+|.+  +|+|++++.||.+|++|+.||.|.||+.+
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~----~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL----VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccceeeee----ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            9999999999998875433                12222    57877  99999999999999999999999999987


Q ss_pred             eeeeeccc
Q 016522          374 YIFVLMPC  381 (388)
Q Consensus       374 ~~~~~~~~  381 (388)
                      ....++.+
T Consensus       308 S~Q~iRtl  315 (476)
T KOG0646|consen  308 SKQCIRTL  315 (476)
T ss_pred             hHHHHHHH
Confidence            65544433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=195.00  Aligned_cols=225  Identities=24%  Similarity=0.382  Sum_probs=190.9

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC------C-----CCCCCCCceeEEecccccceEEEEEEeCCC
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS------P-----TDKDGNLPVSRMLSGHKGYVSCCQYVPDED  171 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~------~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (388)
                      ..+..|.+++.+-+|++||.++++|+.|-.|++.|++.      .     .......++++++..|..+|+++.|+|.. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence            45677999999999999999999999999999999982      1     11223457889999999999999999985 


Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE---Eec
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---FHG  248 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~  248 (388)
                      .+|++|+.|++|+++|+........+..   .....++.++.|+| .+.++++|..-.++++||+.+. ++...   -..
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~-QcfvsanPd~q  259 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQ  259 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHH---hhccceeeeEeecC-CCceEEEecCCCceeEEeccce-eEeeecCcccc
Confidence            8999999999999999976543333211   24456899999999 8899999999999999999876 44333   246


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      |.+.|+++.+++.+++.++++.||.|++||--+++++.++...++.   ..|++..|..+|+|+++.+.|..+++|.+.+
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            8899999999999999999999999999999999999888765543   4699999999999999999999999999999


Q ss_pred             ceEEeecc
Q 016522          329 AKVVLNLG  336 (388)
Q Consensus       329 ~~~~~~~~  336 (388)
                      ++.+..+.
T Consensus       337 ~R~l~~Yt  344 (430)
T KOG0640|consen  337 GRMLKEYT  344 (430)
T ss_pred             CceEEEEe
Confidence            99988774

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=5.5e-27  Score=192.47  Aligned_cols=305  Identities=16%  Similarity=0.243  Sum_probs=228.9

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee---e-CCccEEEEEECCCCCEEEE
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---L-PCAWVMTCAFSPTGQSVAC  126 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~  126 (388)
                      .|+=.........+.-+..|....|+|.+..|+.....|.+.+|+.+.+.......   . ....|.|++|.++|+ +++
T Consensus       184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT  262 (626)
T KOG2106|consen  184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT  262 (626)
T ss_pred             hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence            44444444445555566789999999966655555556899999998877654432   1 225699999999987 778


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-----------EE
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----------TS  195 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-----------~~  195 (388)
                      |..+|.|.||+..+..       ..+....|.+.|.+++...+|  .|++|+.|+.|..||-.-.+.           ++
T Consensus       263 gDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iR  333 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIR  333 (626)
T ss_pred             ecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCee
Confidence            9999999999997644       455555999999999999986  478899999999998321100           00


Q ss_pred             Ee-----------------ec-------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC
Q 016522          196 VF-----------------GG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (388)
Q Consensus       196 ~~-----------------~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (388)
                      ..                 ..       ....+|......++.+| ..+.+++++.|+.+++|+ . . ++.-. ..-..
T Consensus       334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~-~-k~~wt-~~~~d  408 (626)
T KOG2106|consen  334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-D-H-KLEWT-KIIED  408 (626)
T ss_pred             EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-C-C-ceeEE-EEecC
Confidence            00                 00       01146777888999999 778899999999999999 2 2 33322 23467


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-  330 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  330 (388)
                      ++.|+.|+|.| .++.|+..|...+.|.++...+.....      ..+++.+.|+|+|.+||+|+.|+.|++|-+.... 
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence            89999999999 999999999999999988544443322      3359999999999999999999999999887543 


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP  380 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~  380 (388)
                      ......   ..+..+|+.+.|++|+++|.+-+.|-.|-.|.+.......+
T Consensus       482 ~y~r~~---k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts  528 (626)
T KOG2106|consen  482 KYSRVG---KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS  528 (626)
T ss_pred             EEEEee---eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence            333332   44558999999999999999999999999997665444333

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=189.09  Aligned_cols=250  Identities=17%  Similarity=0.196  Sum_probs=195.5

Q ss_pred             eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522          106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (388)
Q Consensus       106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  184 (388)
                      ..+...|.+++||| ...++++|+.||+|++|+++....     ...+....|.++|.+++|+.+| ..+++|+.|+.++
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k   97 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAK   97 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCC-ceEEeeccCCceE
Confidence            34567799999999 556667999999999999987321     1235667899999999999998 6799999999999


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCCC--cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      +||+.+++....      ..|..+|.++.|-+ ..  ..|++|+.|.+|+.||+|.. .++.++.- ...+.++..  ..
T Consensus        98 ~wDL~S~Q~~~v------~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L-PeRvYa~Dv--~~  166 (347)
T KOG0647|consen   98 LWDLASGQVSQV------AAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL-PERVYAADV--LY  166 (347)
T ss_pred             EEEccCCCeeee------eecccceeEEEEec-CCCcceeEecccccceeecccCCC-Ceeeeeec-cceeeehhc--cC
Confidence            999999966655      58999999999987 43  48999999999999999987 67766663 445666554  45


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE--EeeccCCCC
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLGSLQN  340 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~  340 (388)
                      .+++++..+..|.+|+++.+........   ......+.+++..++..-.+.|+-+|.+.|..+..+.+  -.++    +
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~---SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF----k  239 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIE---SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF----K  239 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhc---CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE----E
Confidence            6788889999999999977644332221   11223488999989888889999999999998887633  2223    3


Q ss_pred             CcC---------CCeeEEEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522          341 SHE---------GRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLM  379 (388)
Q Consensus       341 ~~~---------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~  379 (388)
                      .|.         ..|++|+|+|....|+|+|.||++.+|+.....++.
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk  287 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK  287 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence            443         368999999998899999999999999975544443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.8e-29  Score=201.61  Aligned_cols=249  Identities=17%  Similarity=0.234  Sum_probs=206.4

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC--
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--  143 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--  143 (388)
                      -.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|...|+|+.|+-||.+|++|+.||.|.+|.+..--.  
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            456899999999999999998999999999999999999999999999999999999999999999999999865321  


Q ss_pred             CCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          144 KDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                      ......+...+..|.-+|+++...+.| +..+++++.|.++++||+..+..+..+      ..+..+.+++.+| .+..+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------~fp~si~av~lDp-ae~~~  232 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------TFPSSIKAVALDP-AERVV  232 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------ecCCcceeEEEcc-cccEE
Confidence            222455678889999999999988752 457999999999999999999888886      5678899999999 77889


Q ss_pred             EEeeCCCceEEEECCCCC---------------cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          223 VSGSCDSTARLWDTRVAS---------------RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      ++|+.+|.|.+.++....               ..+..+.+|.+  +|+|++++-||.+|++|+.||.++|||+.+.+++
T Consensus       233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            999999999998876442               23556778888  9999999999999999999999999999999888


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEc
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT  326 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  326 (388)
                      +++....+     +|+.+.+.|-.+-.+.+ .....+-.|++
T Consensus       313 Rtl~~~kg-----pVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  313 RTLQTSKG-----PVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             HHHhhhcc-----ccceeEeeccccceecccccCccCCchHh
Confidence            88764333     48888886654433332 22334444443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=3.8e-27  Score=193.38  Aligned_cols=301  Identities=18%  Similarity=0.264  Sum_probs=238.1

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCC--CCCeEEEE--eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      .-++.|+...+..++.+-.....|+|++|++  .|.+|+..  +.+..+.+||...+......+..+..|....|+|.+.
T Consensus       134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~  213 (626)
T KOG2106|consen  134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP  213 (626)
T ss_pred             CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC
Confidence            3456799999999999998888999999998  34455443  4556789999999999888888889899999999887


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      .+++....|.+..|+.+.+.-.    .....+. ..+..|.|++|.++|+  +++|..+|.|.||+..+.......    
T Consensus       214 nliit~Gk~H~~Fw~~~~~~l~----k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~----  283 (626)
T KOG2106|consen  214 NLIITCGKGHLYFWTLRGGSLV----KRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQV----  283 (626)
T ss_pred             cEEEEeCCceEEEEEccCCceE----EEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEe----
Confidence            7777777899999998875411    1111222 2247899999999874  899999999999999877766665    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC---------------------------------------cc
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------------------------------RA  242 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~  242 (388)
                       ..|.+.|.+++... ++. |++|+.|..|..||-.-.+                                       ..
T Consensus       284 -~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  284 -HAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             -eecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence             58999999999985 554 5569999999999832110                                       01


Q ss_pred             eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  322 (388)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (388)
                      .....+|......++.+|+.+.+++++.|+.+++|+  ..+.........      +..++.|+|.| .+|+|+..|...
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEE
Confidence            112346777888999999999999999999999999  444444433322      47899999999 999999999999


Q ss_pred             EEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +.|..+...+..-     ....++++++|+|+|.+||.|+.|+.|+||...-
T Consensus       432 V~d~e~~~lv~~~-----~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  432 VLDTETQDLVTIH-----TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             EEecccceeEEEE-----ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            9999986655543     3388999999999999999999999999998643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.6e-28  Score=187.56  Aligned_cols=248  Identities=17%  Similarity=0.235  Sum_probs=198.2

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      +...|..+.|+|.+..|+++++||.+++|+.....        ......|..++.+++|.++  ..+++|+.||.|+.+|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence            45679999999999999999999999999998742        2334468899999999984  5699999999999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (388)
                      +.++.....      ..|...+.++...+ ..+.+++|+.|++|++||.+.. .....+.. ...|.++..  .++.|++
T Consensus        82 ln~~~~~~i------gth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~-~kkVy~~~v--~g~~LvV  150 (323)
T KOG1036|consen   82 LNTGNEDQI------GTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-VVVGTFDQ-GKKVYCMDV--SGNRLVV  150 (323)
T ss_pred             ecCCcceee------ccCCCceEEEEeec-cCCeEEEcccCccEEEEecccc-cccccccc-CceEEEEec--cCCEEEE
Confidence            999876655      58999999999998 7788999999999999999964 44444442 347888777  4778999


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccCCCCCcC
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHE  343 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~  343 (388)
                      |+.|..+.+||+++.........   ..-...+.++++-|++.=.++++-||+|.+=.+...    +....+    +.|.
T Consensus       151 g~~~r~v~iyDLRn~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF----kCHr  223 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF----KCHR  223 (323)
T ss_pred             eecCceEEEEEcccccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE----Eeee
Confidence            99999999999998765543222   223345899999998888899999999887665544    222222    3443


Q ss_pred             ---------CCeeEEEECCCCCeEEEccCCCeEEEeccceeeeeccccc
Q 016522          344 ---------GRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC  383 (388)
Q Consensus       344 ---------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  383 (388)
                               .+|++|+|+|-...|+|||.||.|.+|+......+..++.
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence                     4799999999988999999999999999887666655544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.5e-28  Score=207.46  Aligned_cols=258  Identities=22%  Similarity=0.336  Sum_probs=220.5

Q ss_pred             ccccccCCCCCcccCCCCcee--eeccccccCCeeE-EEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE
Q 016522           39 AGYSRSQGRAPVSFGPTDLVC--CRTLQGHAGKVYS-LDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT  114 (388)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~v~~-~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  114 (388)
                      -..+.++++....|.+...+.  .+.+.+|.+-|.+ ++|-+ ++-+|++|+.|++|.+|...+..+...+++|...|.+
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~  106 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS  106 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence            346677788899998864433  3678889998888 88886 4457999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      +....++. +++|+.|.++++|....         +...+.+|...|+++...|.+  .++||+.|.+|++|.-  ++..
T Consensus       107 ls~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l  172 (745)
T KOG0301|consen  107 LSIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLL  172 (745)
T ss_pred             eecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchh
Confidence            99888887 99999999999999876         556699999999999999975  7999999999999985  6777


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                      .++     .+|.+.|..+++-+ + ..|++++.||.|++|++. + ..+..+.+|.+-+.+++..+++..++++++|+++
T Consensus       173 ~tf-----~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  173 KTF-----SGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             hhh-----ccchhheeeeEEec-C-CCeEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence            888     79999999999996 3 357899999999999994 3 7889999999999999988888999999999999


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +||+..  .+.+.+..+..     .|+++.+-++|. |++|++||.|+||...
T Consensus       244 riW~~~--e~~q~I~lPtt-----siWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  244 RIWKKD--ECVQVITLPTT-----SIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeecC--ceEEEEecCcc-----ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            999976  56666544332     388888887776 5678899999999754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=5.5e-27  Score=203.35  Aligned_cols=292  Identities=21%  Similarity=0.260  Sum_probs=237.5

Q ss_pred             CCeeEEEeCCCC--CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSER--NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      +.|+++. +|.-  +.++.|+.+|.+.+|++.+++.+.+++.+...|+++.-+|--+.++.|..+|.|.++++..++   
T Consensus       160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk---  235 (910)
T KOG1539|consen  160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK---  235 (910)
T ss_pred             CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc---
Confidence            3488874 6643  678999999999999999999999999999999999999999999999999999999999865   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                          ....++...+.|+.++|..||..++++|+..|.+.+||++..+......    ..|.+.+....+.| +...++++
T Consensus       236 ----il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~----nah~~sv~~~~fl~-~epVl~ta  306 (910)
T KOG1539|consen  236 ----ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR----NAHYGSVTGATFLP-GEPVLVTA  306 (910)
T ss_pred             ----EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee----ccccCCcccceecC-CCceEeec
Confidence                5666665569999999999999999999999999999999988777763    47888888888888 77888888


Q ss_pred             eCCCceEEEECCCCC---cceEEEe-------------------------------------------------------
Q 016522          226 SCDSTARLWDTRVAS---RAVRTFH-------------------------------------------------------  247 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~---~~~~~~~-------------------------------------------------------  247 (388)
                      +.|..+++|=.+++.   +.++.-.                                                       
T Consensus       307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~  386 (910)
T KOG1539|consen  307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN  386 (910)
T ss_pred             cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence            888887777332110   0000000                                                       


Q ss_pred             -----------------------------------------------------cc------cCCeeEEEEccCCCEEEEe
Q 016522          248 -----------------------------------------------------GH------EGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       248 -----------------------------------------------------~~------~~~i~~~~~~~~~~~l~~~  268 (388)
                                                                           .+      ...+++++.++.|++.+.|
T Consensus       387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG  466 (910)
T KOG1539|consen  387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG  466 (910)
T ss_pred             ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence                                                                 01      1346788888889999999


Q ss_pred             eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-----------
Q 016522          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----------  337 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------  337 (388)
                      +..|.|-+|++.+|-....+..  .+.+..+|+.++.+.-++.+++++.+|.+.+||......+..+..           
T Consensus       467 ~S~G~Id~fNmQSGi~r~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr  544 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIHRKSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR  544 (910)
T ss_pred             ccCCeEEEEEcccCeeeccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence            9999999999999987777742  234566799999999999999999999999999877664443321           


Q ss_pred             --------------------------CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          338 --------------------------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       338 --------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                                                ...+|.+.|++++|||||+.|++++.|++|++|+...
T Consensus       545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence                                      0135999999999999999999999999999999643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.3e-28  Score=200.25  Aligned_cols=287  Identities=18%  Similarity=0.252  Sum_probs=224.9

Q ss_pred             CCCCcccCCCCceeeeccccccC--CeeEEEeCCCCCeEEE--EeCCCcEEEEECCCC--CeeeEeeeCCccEEEEEECC
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAG--KVYSLDWTSERNRIVS--ASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t--~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ......|+...+.....+..|+.  .+.++.|+.... |++  .+.|..+++|.-...  +....-+.....-.|++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            34555666666655555555543  488999987653 544  456778999964322  22222222233455666666


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      ...++++|+..+.|+|||++...       +.+.+++|...|+++.|+... .+|++++..|.|.|..+.++.....|. 
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~-  160 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT-  160 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee-
Confidence            67999999999999999998643       677889999999999999874 789999999999999999998888773 


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEE
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  278 (388)
                         .+....+.-+.++|....+|.+++.+|.|.+||.............|..+...|+|+| +..+|++.+.|..|.+||
T Consensus       161 ---~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  161 ---IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             ---cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence               3345566789999988889999999999999999877555566678999999999999 677889999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      .+.......+...+      +.+.++|+++|.+|++|+..|.|+.||++..+ ++..+    ..|...|++++|-+..
T Consensus       238 ~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  238 IRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----SAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccccceeeecC------CcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----eecccceeEEEeeecc
Confidence            99776666654432      48999999999999999999999999998654 55555    7899999999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.5e-27  Score=202.81  Aligned_cols=300  Identities=21%  Similarity=0.251  Sum_probs=234.9

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEee-----eCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIK-----LPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (388)
                      .+.||.+-|.++.|+|.+..|++++.|.++.+|...+.  --+...+     +.........|+|+++.+++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            45599999999999999999999999999999986554  2222222     2234578899999999999999999999


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEE
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      +|....    ...+.......+|.+.|.+++|.|.| .++++.+.|.+-+++-.-..+ .-..+..  +.-|.-.++|++
T Consensus       342 lWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaR--PQiHGyDl~c~~  414 (764)
T KOG1063|consen  342 LWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIAR--PQIHGYDLTCLS  414 (764)
T ss_pred             EEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecc--cccccccceeee
Confidence            999332    23445566778999999999999997 589999999999998765222 2222222  256888999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCC------------------------------------------------------
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVA------------------------------------------------------  239 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~------------------------------------------------------  239 (388)
                      +-+ ....|++|.....+|+|+....                                                      
T Consensus       415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            987 5778899999999999975410                                                      


Q ss_pred             ---------------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCceeeEeeeccC
Q 016522          240 ---------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       240 ---------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~  293 (388)
                                           ...+..+.+|...|.+++.+|+++++|+++...     .|++|+..+......+..   
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---  570 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG---  570 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc---
Confidence                                 011233457888999999999999999988643     599999998887776643   


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                        |.-.|+.++|||||++|++.+.|.++.+|........ ..+. ..+.|..-|.+..|+|++.+++|++.|.+|+||..
T Consensus       571 --HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  571 --HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA-CLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             --cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc-cccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence              4446999999999999999999999999987543221 1111 12789999999999999999999999999999987


Q ss_pred             cee
Q 016522          373 YYI  375 (388)
Q Consensus       373 ~~~  375 (388)
                      ...
T Consensus       648 ~~~  650 (764)
T KOG1063|consen  648 PDL  650 (764)
T ss_pred             cCc
Confidence            543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.96  E-value=9.5e-28  Score=186.75  Aligned_cols=299  Identities=21%  Similarity=0.281  Sum_probs=224.2

Q ss_pred             eccccccCCeeEEEeCC-----CCCeEEEEeCCCcEEEEECCCCCe---eeEee--eCCccEEEEEECCC----CCEEEE
Q 016522           61 RTLQGHAGKVYSLDWTS-----ERNRIVSASQDGRLIVWNALTSQK---THAIK--LPCAWVMTCAFSPT----GQSVAC  126 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~--~~~~~v~~~~~~~~----~~~l~~  126 (388)
                      +....|+.+|..++|++     +...+||++. ..+.+|.....-.   ++.+.  .+......++|+-+    ..++++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34556889999999985     2246666665 4788888754332   22222  24566778888653    468999


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  206 (388)
                      |+.-|.|+|.|+.++.       ....+.+|...|+.+.++|+..+++++++.|..|++|++++..++..+...  .+|.
T Consensus       111 ~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHr  181 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHR  181 (385)
T ss_pred             ecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--cccc
Confidence            9999999999999865       778899999999999999998899999999999999999999999999655  6899


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC------------------------cc---eEEEecccCCeeEEEEc
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------RA---VRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~~---~~~~~~~~~~i~~~~~~  259 (388)
                      ..|.++.|++ ++.++++++.|.+|.+|++....                        ..   ..+-..|...|.|+.|.
T Consensus       182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~  260 (385)
T KOG1034|consen  182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF  260 (385)
T ss_pred             CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence            9999999999 78899999999999999998321                        00   01223467777788885


Q ss_pred             cCCCEEEEeeCCCcEEEEECCC-CceeeEe----------eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRT-GHQLQVY----------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                        |+++++-+.++.|..|.... .+.....          ....-+...-+....+|+|-+++||.|...|.|++||++.
T Consensus       261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN  338 (385)
T ss_pred             --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence              68999999999999998722 1111111          0000011111234456778889999999999999999998


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .++...-..........|...+|+.||.+|+..++|++|--|+.
T Consensus       339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            77642211111233467999999999999999999999988864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=6e-26  Score=192.44  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=205.0

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ..+.....|++.+.+....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++
T Consensus         8 ~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~   85 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGK   85 (300)
T ss_pred             cCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCC
Confidence            4456777888888888888887654 6789999999876 5677889999999999888776665444 57889999999


Q ss_pred             EEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-eEEEEecCCCceEEEeecc
Q 016522          123 SVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       123 ~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~  200 (388)
                      .++++ +.++.+++||+.+..       ....+. +...+.+++|+|++ .+++++..++ .+.+||..++.......  
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~--  154 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRK-------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL--  154 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCe-------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence            77655 568999999998643       233332 22346789999987 5666666654 57788998877655441  


Q ss_pred             cccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEeccc-----C--CeeEEEEccCCCEEEE-eeCC
Q 016522          201 FQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHE-----G--DVNTVKFFPDGNRFGT-GSDD  271 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~-~~~d  271 (388)
                          ....+.+++|+| ++.++ +++..++.|++||+.+. +.+..+..+.     .  ....++|+|+++++++ .+.+
T Consensus       155 ----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       155 ----VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             ----cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence                223456789998 55655 55556999999999876 4444443221     1  2356889999998655 4456


Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      +.+.+||+++++........      ..+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+    .. ....+.++
T Consensus       229 ~~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~----~~-~~~~~~~~  297 (300)
T TIGR03866       229 NRVAVVDAKTYEVLDYLLVG------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI----KV-GRLPWGVV  297 (300)
T ss_pred             CeEEEEECCCCcEEEEEEeC------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----Ec-ccccceeE
Confidence            78999999988776554321      247899999999999886 45899999999999998888    33 35568888


Q ss_pred             ECC
Q 016522          351 LSA  353 (388)
Q Consensus       351 ~~~  353 (388)
                      ++|
T Consensus       298 ~~~  300 (300)
T TIGR03866       298 VRP  300 (300)
T ss_pred             eCC
Confidence            765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-28  Score=209.02  Aligned_cols=214  Identities=17%  Similarity=0.304  Sum_probs=178.0

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCS  134 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  134 (388)
                      ..++++.|.||.+.|.++.|+.++ +|++++.|.+|++|++...+++..|. |...|+|++|+| |.+||++|+-||.|+
T Consensus       358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR  435 (712)
T KOG0283|consen  358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR  435 (712)
T ss_pred             cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence            457889999999999999999875 99999999999999999989888776 778899999999 789999999999999


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc---cCCccCeEE
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLS  211 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~i~~  211 (388)
                      ||++...+       + .....-..-|++++|.|+| +..+.|+.+|.+++|+....+....+.....   ......|+.
T Consensus       436 iWsI~d~~-------V-v~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG  506 (712)
T KOG0283|consen  436 LWSISDKK-------V-VDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG  506 (712)
T ss_pred             EeecCcCe-------e-EeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence            99998744       2 2333344889999999997 6899999999999999988776655432111   122238999


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      +.+.|.+...+++.+.|..|+|||.+.. ..+..++++..  .-....|+.||++|++++.|..|++|+...
T Consensus       507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  507 LQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            9999977777888899999999999776 67777776543  235678999999999999999999999743

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.7e-29  Score=215.55  Aligned_cols=257  Identities=22%  Similarity=0.417  Sum_probs=222.9

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      ..+++....+-.+++||...      +..|...+.++..-..++.+++|+.|-.+-+|.+....       ....+.+|.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~he   70 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHE   70 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------hhheeeccC
Confidence            33445555566777887532      34567778888877788999999999999999988744       344589999


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (388)
                      .+|.++.|++.. .++++|+.+|+|++||++..+.+..+     .+|...+.++.|+| -+.+++.|+.|+.+.+||.+.
T Consensus        71 spIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-----tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk  143 (825)
T KOG0267|consen   71 SPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-----TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK  143 (825)
T ss_pred             CcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-----hccccCcceeeecc-ceEEeccccccccceehhhhc
Confidence            999999999985 78999999999999999999988888     89999999999999 888999999999999999997


Q ss_pred             CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      . .+...+.+|...+..+.|+|+|++++.++.|..++|||+..|+....|..+.+     .+..+.|+|..-.++.|+.|
T Consensus       144 ~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-----~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  144 K-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-----KVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             c-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-----cccccccCchhhhhccCCCC
Confidence            6 78889999999999999999999999999999999999999999888865444     48889999999999999999


Q ss_pred             CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      +++++||+++.+.+...    ......|.+.+|+|++..+++|..+.
T Consensus       218 ~tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeeccceeEEeecc----CCccCCceeeeecCCceeeecCchhh
Confidence            99999999999998887    55678999999999999888886554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=201.59  Aligned_cols=293  Identities=16%  Similarity=0.194  Sum_probs=211.1

Q ss_pred             EEeCC---CCCeEEEEeCCCcEEEEECCCCCe------eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522           73 LDWTS---ERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD  143 (388)
Q Consensus        73 ~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  143 (388)
                      ..|++   ....|+.+.+||.|.++|......      ......|...|..+.|.|....|++++.|.++++||+.....
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            55655   335899999999999999765332      245567999999999999778899999999999999998652


Q ss_pred             CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE--EEe------------------ec--cc
Q 016522          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--SVF------------------GG--EF  201 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~------------------~~--~~  201 (388)
                      .     -...+.+|.+.|.+++|.|.+...|++|+.||.|.|||++....-  ..+                  ..  ..
T Consensus       135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            1     223478999999999999999999999999999999998754300  000                  00  00


Q ss_pred             ccCCccCeEE---EEeeCCCCcEEEEeeC-CCceEEEECCCCCcce-------EEEecc---cCCeeEEEEccCCCEEEE
Q 016522          202 QSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRAV-------RTFHGH---EGDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       202 ~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~~~~~---~~~i~~~~~~~~~~~l~~  267 (388)
                      ...+...|.+   +.+.. +...|++++. |+.|++||++......       ..+..|   ...+.++.....|.+|++
T Consensus       210 ~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             cccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            0223333443   33443 6677888777 9999999999763221       112223   335777888878899998


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                      .+.|+.|++|++.....-......+.... .....-..+|++.++++|+.|...++|.+.+.+....+.   .+|.-.|+
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt  364 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVT  364 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEE
Confidence            88899999999987543322221111111 112334578999999999999999999998766543332   78999999


Q ss_pred             EEEECCC-CCeEEEccCCCeEEEecccee
Q 016522          348 CLGLSAD-GSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       348 ~~~~~~~-~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      +++|.|. -.-+++++.|..++||..+..
T Consensus       365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  365 TVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999883 335788899999999997543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.5e-27  Score=205.02  Aligned_cols=250  Identities=17%  Similarity=0.256  Sum_probs=209.8

Q ss_pred             eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (388)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  185 (388)
                      ..|....+.++|.|+|.+|++++.||.|++|+.....+      ....+..+...|.+++...   .+|++|+.+++|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETIDISGELVSSIACYS---NHFLTGSEQNTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence            35777789999999999999999999999999887521      1122222667777776653   47999999999999


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      |.+..+..-..+     ....-++.+++++. ++++++.|+.|-.|++.++... .....+.+|.++|.++.|+|++++|
T Consensus        81 y~fps~~~~~iL-----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   81 YKFPSGEEDTIL-----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             eeCCCCCcccee-----eeeeccceEEEEec-CCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE
Confidence            999988766555     56677899999998 8999999999999999999887 7788999999999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      |+.+.||.|++||+.++.....+......   .....++.++|+|+|..+++...|+.|.+|+..+++....+..  ..+
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~--~~~  231 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD--KLS  231 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc--ccc
Confidence            99999999999999998777665433222   1234578899999988888888999999999999998887753  345


Q ss_pred             CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          343 EGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ...+.++.|+|+|+|||+++.||.|.||+..
T Consensus       232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            5559999999999999999999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.6e-26  Score=191.75  Aligned_cols=227  Identities=19%  Similarity=0.288  Sum_probs=185.4

Q ss_pred             CCCCcccCCCCc-eeeeccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           46 GRAPVSFGPTDL-VCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        46 ~~~~~~~~~~~~-~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      ++.+-.|++... -+..++.|+.+ .|-+++|++ +.+|++.+.+|.|.-||+.++++...+....+.|.+++.+|.+..
T Consensus        46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~  124 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTI  124 (691)
T ss_pred             CCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccce
Confidence            455566887644 45567777764 899999995 458889999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc-
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-  202 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-  202 (388)
                      ++.|+.||.+..++...+     .+.....+...++.|.+++|+|++ ..+++|+.||.|++||..++........... 
T Consensus       125 l~IgcddGvl~~~s~~p~-----~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~  198 (691)
T KOG2048|consen  125 LAIGCDDGVLYDFSIGPD-----KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR  198 (691)
T ss_pred             EEeecCCceEEEEecCCc-----eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence            999999997666666552     344555666678999999999996 6699999999999999999887763321111 


Q ss_pred             --cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          203 --SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       203 --~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                        .....-|.++.+-  ....+++|...|+|.+||...+ ..++.+..|...|.+++..++++++++++.|+.|..|...
T Consensus       199 l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  199 LSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             cccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence              1233446777776  4568999999999999999988 8889999999999999999999999999999998888765


Q ss_pred             CC
Q 016522          281 TG  282 (388)
Q Consensus       281 ~~  282 (388)
                      +.
T Consensus       276 ~~  277 (691)
T KOG2048|consen  276 TN  277 (691)
T ss_pred             CC
Confidence            43

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.5e-27  Score=200.34  Aligned_cols=299  Identities=15%  Similarity=0.203  Sum_probs=234.5

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEeeeCCccEEEEEECCC-----------CCEEEEeeCCCcEEE
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSPT-----------GQSVACGGLDSVCSI  135 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~v  135 (388)
                      ..++.|.|....|.+...|..++|||+...+.+   ..+-.|...|..+.--|.           ...|.+++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            346778988889999999999999999876544   344567777777766551           235899999999999


Q ss_pred             EeCCCCCCCCC------------------CCce------------eEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522          136 FNLNSPTDKDG------------------NLPV------------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (388)
Q Consensus       136 w~~~~~~~~~~------------------~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  185 (388)
                      |++........                  +...            ..........+.+++.+|+| ++|++|..-|.+++
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRV  485 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEE
Confidence            99987331100                  0000            00111234568999999997 68999999999999


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-  262 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  262 (388)
                      ||+........+     ..|...|.|+.++.+  ..++|++++.|..|++||....-.+++++.+|...|+++.|.-+| 
T Consensus       486 y~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  486 YDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL  560 (1080)
T ss_pred             EEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence            999988887777     799999999999853  357899999999999999988778899999999999999998866 


Q ss_pred             -CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC
Q 016522          263 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  341 (388)
Q Consensus       263 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (388)
                       ..+++++.|..|.+--.+.......+...........+..++..|..+++++++.|..|+|||+.+++....+... ..
T Consensus       561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~  639 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RD  639 (1080)
T ss_pred             ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-cc
Confidence             6788999998765433332222233333333333446899999999999999999999999999999999988644 56


Q ss_pred             cCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          342 HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      |++....+...|.|.||++.+.|.++.++++...
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            7788889999999999999999999999987653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.2e-26  Score=197.24  Aligned_cols=320  Identities=17%  Similarity=0.257  Sum_probs=232.0

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCC---eEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~  115 (388)
                      .+......+..|+|.+......+.||..+|+|+.|-|...   ++++|+.||.|++|.++....  +..+.+|.  ..++
T Consensus        28 vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~  105 (764)
T KOG1063|consen   28 VAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECV  105 (764)
T ss_pred             EEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEE
Confidence            4445566778899999999999999999999999999877   899999999999999984433  34444444  5555


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCc
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +++.......+...|+.+.+|+.+...     ..+...+.-  ......|++..++ +..+++.|+.+..|.++.-...+
T Consensus       106 cv~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~  180 (764)
T KOG1063|consen  106 CVVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADS  180 (764)
T ss_pred             EEEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcc
Confidence            565554445555789999999994422     111222211  1223355666663 33446677788888888766443


Q ss_pred             --eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC--------------------cce-----
Q 016522          193 --RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS--------------------RAV-----  243 (388)
Q Consensus       193 --~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--------------------~~~-----  243 (388)
                        ....+     .+|.+.|.+++|....  .-+++++++|..|+||.+....                    ...     
T Consensus       181 f~~v~el-----~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~  255 (764)
T KOG1063|consen  181 FARVAEL-----EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY  255 (764)
T ss_pred             eeEEEEe-----eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence              33344     7999999999997533  4578899999999999875332                    011     


Q ss_pred             -----EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee--eccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          244 -----RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY--QQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       244 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                           ..+.+|.+.|.++.|+|.+..|++++.|.++.+|...+..-+..-.  ...............|+|+++.+++-+
T Consensus       256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g  335 (764)
T KOG1063|consen  256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG  335 (764)
T ss_pred             EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence                 1124899999999999999999999999999999877653332222  111112234578899999999999999


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ..|..++|..... ..........+|.+.|++++|+|.|.+|++.|.|.+-|++...
T Consensus       336 ~~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  336 RTGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             ccCcEEEEeccCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence            9999999983332 2222233338999999999999999999999999999998865

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.9e-26  Score=191.37  Aligned_cols=289  Identities=18%  Similarity=0.247  Sum_probs=228.7

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      .+.--..+|.++||+.+.+.||.+-.||.|-+|++..+=. ...+.+ .+..|.+++|+ ++..|++.+.+|.|.-||+.
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence            3333457899999999999999999999999999977433 333444 34679999999 55567788889999999999


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      +.+       .........+.|++++.+|.+ ..++.|+.||.+..++...++.......   ....+.+.+++|+| .+
T Consensus        99 ~lk-------~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~~-~~  166 (691)
T KOG2048|consen   99 TLK-------QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWNP-TG  166 (691)
T ss_pred             cCc-------eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEecC-Cc
Confidence            865       566777788999999999986 6799999999888888877765544322   34568999999999 88


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEe----c----ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFH----G----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      ..+++|+.||.|++||...+. .+....    +    ...-|.++.|-.+ ..|++|...|+|.+||...+..++.+..+
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             cEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            889999999999999998873 333111    1    1223667777644 56999999999999999999998888665


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ...     |.+++.++++.++++++.|+.|..|...+++...........|...|.+++..++  .|++||.|..+.+-.
T Consensus       245 ~ad-----Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  245 DAD-----VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             hcc-----eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            554     9999999999999999999999999887765422222233678889999999877  899999999998765


Q ss_pred             c
Q 016522          372 H  372 (388)
Q Consensus       372 ~  372 (388)
                      .
T Consensus       318 s  318 (691)
T KOG2048|consen  318 S  318 (691)
T ss_pred             c
Confidence            3

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.8e-27  Score=192.32  Aligned_cols=249  Identities=16%  Similarity=0.235  Sum_probs=197.3

Q ss_pred             eeEEEeCC-------CCCeEEEEeCCCcEEEEECCCCCe---------------------eeEeeeCCccEEEEEECCC-
Q 016522           70 VYSLDWTS-------ERNRIVSASQDGRLIVWNALTSQK---------------------THAIKLPCAWVMTCAFSPT-  120 (388)
Q Consensus        70 v~~~~~~~-------~~~~l~t~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~-  120 (388)
                      -.|++|..       .|+++|.|+.|..|.|||+.-...                     -....+|...|.+++|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       357999999999999999742111                     1112356777888888774 


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      ...||+|+.|.+|++||+.+++       +..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.+........   
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---  325 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---  325 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---
Confidence            4678999999999999999977       677788899999999999999999999999999999999953322222   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (388)
                        -...+.|-.++|.|.....+++++.||+|+-+|+|+..+++.++.+|.++|.+|++++ ...++++++.|+.|++|++
T Consensus       326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence              2456789999999988999999999999999999999999999999999999999998 4567899999999999998


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                      ....+........   ..+...|.++.|+-. +++.|+..+.++|||+.+...+.
T Consensus       404 ~~~~~~~v~~~~~---~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  404 DVDSPKSVKEHSF---KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cCCCCcccccccc---cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            7655433322211   112366777778765 67788888899999998776553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.1e-29  Score=212.62  Aligned_cols=239  Identities=22%  Similarity=0.396  Sum_probs=216.5

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      +.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            45667999999999877888999999999999999998888888999999999999999999999999999999999997


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      ..       ..+.+.+|...+..+.|+|.+ .+.++|+.|+.+++||++...+...+     .+|...+..+.|+| ++.
T Consensus       102 Ak-------~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~-----~s~~~vv~~l~lsP-~Gr  167 (825)
T KOG0267|consen  102 AK-------IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY-----KSHTRVVDVLRLSP-DGR  167 (825)
T ss_pred             hh-------hhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee-----cCCcceeEEEeecC-CCc
Confidence            55       677899999999999999997 67899999999999999988888888     67999999999999 999


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (388)
                      +++.|+.|..+++||...+ +....|..|.+.+..+.|+|..-++++|+.|+++++||+++...+......     ...|
T Consensus       168 ~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v  241 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGV  241 (825)
T ss_pred             eeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCc
Confidence            9999999999999999988 888999999999999999999999999999999999999987666554332     3459


Q ss_pred             EEEEecCCCCEEEEEecCC
Q 016522          301 TSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg  319 (388)
                      .+.+|+|++..+++|....
T Consensus       242 ~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  242 RSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeecCCceeeecCchhh
Confidence            9999999999999887654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=183.58  Aligned_cols=256  Identities=20%  Similarity=0.306  Sum_probs=196.9

Q ss_pred             ceeeeccccccCCeeEEEeCCCC--CeEEEEeCCCcEEEEECC----------------CCCeeeEeeeCCccEEEEEEC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNAL----------------TSQKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~  118 (388)
                      ++.-....+|.+.++.+.-++-+  .+.++=+..|.|.||++.                ..+++.++.+|...=..++||
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            44445566788999998888765  466677789999999973                235678888898888999999


Q ss_pred             CCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522          119 PTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       119 ~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  197 (388)
                      |-. ..|++|..-+.|++|...++.-...    ...+.+|+..|..++|+|.....|++|+.||+|+|||++.+.....+
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeec----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            933 4588888889999999988553222    23456799999999999999899999999999999999998433332


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC--CcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcE
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC  274 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  274 (388)
                      ..   ..|.+.|+.|.|+. ...+|++|+.||+++|||+|+-  ..++..++-|..+|++|.|+| +...|++++.|.+|
T Consensus       297 ~~---kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  297 ST---KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             Ee---eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence            21   68999999999998 5559999999999999999864  367889999999999999999 56678899999999


Q ss_pred             EEEECCCCce----------------eeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEE
Q 016522          275 RLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVW  324 (388)
Q Consensus       275 ~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~  324 (388)
                      .+||+.-...                .+.+..+.+   ...+..+.|++.-. ++++.+.|| +.||
T Consensus       373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG---Qke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG---QKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEEEeeccCChhhhccccccchhcCCceeEEEecc---hhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9999854221                111122111   12367788988765 777777776 4444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.5e-26  Score=175.66  Aligned_cols=219  Identities=25%  Similarity=0.349  Sum_probs=176.9

Q ss_pred             eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCc--------eeEEecccccceEEEEEEeCCCceEEE
Q 016522          106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLP--------VSRMLSGHKGYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus       106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (388)
                      ..|.+.|.++...+ .|+++++|+.||.|.+||++..........        -.....+|+-.|.++.|.|-...++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            34667788888877 789999999999999999987552211111        111234688899999999987788999


Q ss_pred             eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCee
Q 016522          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN  254 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~  254 (388)
                      ++.|.++++||..+.+....|      ..++.|.+-+++|.  ...++++|..+-.|++.|+..+ ..-..+.+|...|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVL  192 (397)
T ss_pred             ccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceE
Confidence            999999999999999888877      55677888888873  3467888999999999999998 88899999999999


Q ss_pred             EEEEccCCC-EEEEeeCCCcEEEEECCCC-ceeeEeeecc---------CCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          255 TVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQH---------GENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       255 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      ++.|+|... .|++|+.||.|++||++.. .+...+..+.         ...+.+.+..++|+.++.++++.+.|..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            999999655 5789999999999999865 3443333322         2345667999999999999999999999999


Q ss_pred             EEcccceE
Q 016522          324 WDTLLAKV  331 (388)
Q Consensus       324 ~d~~~~~~  331 (388)
                      |+..+|+.
T Consensus       273 wn~~~G~n  280 (397)
T KOG4283|consen  273 WNMESGRN  280 (397)
T ss_pred             eecccCcc
Confidence            99887653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.4e-28  Score=206.76  Aligned_cols=231  Identities=21%  Similarity=0.309  Sum_probs=194.8

Q ss_pred             cCCCCCcccCCCC---ceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           44 SQGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        44 ~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      +..+.+..|+...   .+.+..|..|+..|++++|++- .++|++||.||+|++||+...+...++......|+.+.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            3456677788776   6777889999999999999984 46899999999999999999999999999999999999999


Q ss_pred             -CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          120 -TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       120 -~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                       .+..|+++...|.+.+||++.+.      .....+..|.++|.|+.|+|++ .+||+||.|+.|+|||+.++.......
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~------r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~t  259 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPD------RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHT  259 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCch------hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeE
Confidence             67889999999999999999865      2556788999999999999964 799999999999999998764433321


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeC--CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCR  275 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  275 (388)
                          -....++.++.|-|.....|++++.  |-.|+|||++.+--+...+..|...++.++|.. |...+.+++.||.|.
T Consensus       260 ----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  260 ----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence                2455789999999988888888764  678999999988888999999999999999976 566788999999887


Q ss_pred             EEECCCCcee
Q 016522          276 LFDIRTGHQL  285 (388)
Q Consensus       276 i~d~~~~~~~  285 (388)
                      .-.+++....
T Consensus       336 qh~~knat~p  345 (839)
T KOG0269|consen  336 QHLFKNATTP  345 (839)
T ss_pred             HhhhhcccCh
Confidence            7666654433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=174.84  Aligned_cols=297  Identities=13%  Similarity=0.184  Sum_probs=214.6

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCS  134 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  134 (388)
                      ++.+...|++|.+.|+++.|..++ +|.+|..-|.|++|++.+......++ .+...|+.+.--|+ ..+.+-+.|+.+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI   80 (323)
T ss_pred             CCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence            345667788999999999999877 58999999999999999999888888 66778888888887 5688888999999


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-e-----------EEEEecCCCceEEEeecccc
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-T-----------CVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~-----------v~i~d~~~~~~~~~~~~~~~  202 (388)
                      +|++....          ...-|.-.++++.|++..   +...+... .           +.+-|......+... ....
T Consensus        81 lw~ia~s~----------~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~-dd~~  146 (323)
T KOG0322|consen   81 LWTIAYSA----------FISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA-DDSE  146 (323)
T ss_pred             EEEccCcc----------eEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEcc-Cchh
Confidence            99998632          233344455555555421   22221111 1           222222222222222 1112


Q ss_pred             cCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCCc---------ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522          203 SGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASR---------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      ....+.+++..+....  .-++++|.++|.+.+||+....+         .......|..+|.++.|.+....=++|+.+
T Consensus       147 ~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~  226 (323)
T KOG0322|consen  147 RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD  226 (323)
T ss_pred             ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence            3455667777754323  34577889999999999987522         223345688999999999876667888888


Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (388)
                      ..+..|++............. .-....+..+.+-||++.+|+++.|++|+||+.++..++..+    ..|.+.|++++|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAf  301 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAF  301 (323)
T ss_pred             ccceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEe
Confidence            899999986542111111100 011224888999999999999999999999999999999999    789999999999


Q ss_pred             CCCCCeEEEccCCCeEEEeccc
Q 016522          352 SADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       352 ~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +|+..++|+++.|+.|.+|..|
T Consensus       302 spd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             CCCCchhhhccCCceEEeeecC
Confidence            9999999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-25  Score=180.01  Aligned_cols=287  Identities=23%  Similarity=0.298  Sum_probs=209.1

Q ss_pred             EEEeCCCCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeC----CccEEEEEECC-------CCCEEEEeeCCCcEEE
Q 016522           72 SLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLP----CAWVMTCAFSP-------TGQSVACGGLDSVCSI  135 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~~~~dg~i~v  135 (388)
                      .+..-|..++++++-.+.     .|++|+-....   .+-.|    .....|++|..       .|+++|.|+.|..|.|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            455667666777765433     24455532211   11112    13346777743       3689999999999999


Q ss_pred             EeCCCCCCCCCC--------------CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          136 FNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       136 w~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ||+.-.......              ........+|+..|.+++|+..-.+.|++|+.|.+|++||+.++++...+    
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~----  282 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI----  282 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh----
Confidence            999753211000              00111234789999999999988889999999999999999999999998    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  280 (388)
                       ..|...|.++.|+|..+.+|++|+.|+++.+.|.|.....-..+. ..+.|-.++|.| ....++++..||.|+-+|+|
T Consensus       283 -~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  283 -THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             -hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence             689999999999999999999999999999999996533333333 467899999999 45678888899999999999


Q ss_pred             CC-ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC-Ce
Q 016522          281 TG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SA  357 (388)
Q Consensus       281 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  357 (388)
                      .. +++.++..+..     +|+++++++... ++++++.|+.|.+|++....+......  .-.-+...|+++.|+- -.
T Consensus       361 ~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  361 NPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             CCCCceeEEEeccC-----CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--cccccceeecccCCCcceE
Confidence            86 66666655443     599999998765 788899999999999875444222110  1112346677777754 46


Q ss_pred             EEEccCCCeEEEeccce
Q 016522          358 LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       358 l~s~~~dg~v~iw~~~~  374 (388)
                      ++.||..+.++||+...
T Consensus       434 la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  434 LAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             EEecCccceEEEeeccc
Confidence            78888899999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=172.96  Aligned_cols=280  Identities=19%  Similarity=0.284  Sum_probs=207.6

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCC------------CeeeEee-eCCccEEEEEEC-------CCCCEEEEeeC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTS------------QKTHAIK-LPCAWVMTCAFS-------PTGQSVACGGL  129 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~  129 (388)
                      ...+.|+|||..|++-+.|..+.+|++...            +....++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            456889999999999999999999987321            0111122 123457777774       67789999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccc---eEEEEEEeCCCceEEEeeCCCeEEEEec-CCCceEEEeec--cccc
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY---VSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGG--EFQS  203 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~--~~~~  203 (388)
                      +.-|++||.-+++.+     .......|...   ..+++|+|||. +|++ +....|+++|+ +.|..-..+..  ....
T Consensus       132 ~~PIh~wdaftG~lr-----aSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLR-----ASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             cCceeeeeccccccc-----cchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence            999999999886622     22233334433   35799999985 4554 55678999999 44432222211  1113


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG  282 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  282 (388)
                      +..+-+.+++++|.+...+++|+....+-||.-... .++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||++..
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            557788999999999999999999999999987766 888899999999999999999999999984 678999999875


Q ss_pred             cee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522          283 HQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       283 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      ... ..+..+.. +.. .-.-....|++++|++|+.||.|++||++. +..+..+    ..+...++.++++|--.++++
T Consensus       284 ~~pv~~L~rhv~-~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~----~~~sd~vNgvslnP~mpilat  357 (406)
T KOG2919|consen  284 RDPVYALERHVG-DTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT----GNYSDTVNGVSLNPIMPILAT  357 (406)
T ss_pred             cchhhhhhhhcc-Ccc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc----ccccccccceecCcccceeee
Confidence            433 33322222 111 123345678999999999999999999988 6656666    678999999999999888888


Q ss_pred             ccC
Q 016522          361 GSW  363 (388)
Q Consensus       361 ~~~  363 (388)
                      ++.
T Consensus       358 ssG  360 (406)
T KOG2919|consen  358 SSG  360 (406)
T ss_pred             ccC
Confidence            764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.2e-26  Score=178.03  Aligned_cols=281  Identities=15%  Similarity=0.216  Sum_probs=206.0

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      +.+|++-..|.|++||..+++.+..++++...+..++|..  ....+.+++.||.|++||++...+.     ......++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----ARISWTQQ  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----hheeccCC
Confidence            5789999999999999999999999999999999999977  5678999999999999999985422     23334444


Q ss_pred             c-cceEEEEEEeCCCceEEEee----CCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCce
Q 016522          158 K-GYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  231 (388)
Q Consensus       158 ~-~~v~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  231 (388)
                      . .+..+++....+ +++++|+    .+-.|.+||++..+. +..+.    ..|...|+++.|+|.+.++|++|+.||.|
T Consensus       116 ~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  116 SGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             CCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceE
Confidence            4 466666665443 6677764    367899999998876 44442    68999999999999999999999999999


Q ss_pred             EEEECCCCCc--ceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCCCeE
Q 016522          232 RLWDTRVASR--AVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVT  301 (388)
Q Consensus       232 ~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~  301 (388)
                      .+||+.....  .+...-.|...|.++.|..++ +.|.+-+..+...+|+++.+.+...+......       .....+.
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            9999986522  233334477889999999766 45888889999999999988765544332110       0111122


Q ss_pred             EEEecC-CCCEEEEEec-CCcEEEEEcc---cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          302 SIAFSI-SGRLLFAGYS-NGDCYVWDTL---LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       302 ~~~~~~-~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .. .+| ++...+.++. -|...++-+.   ++........+..+|..-|.++.|...+.++.|||.||.+.+|.
T Consensus       271 ~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  271 NE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             ec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            22 223 3334444444 5555555433   33333333333356888899999999999999999999999998

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=208.31  Aligned_cols=259  Identities=16%  Similarity=0.248  Sum_probs=211.3

Q ss_pred             eeeeccccccCCeeEEEeCCCCCe----EEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEEEEECCCCC-EEEE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNR----IVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQ-SVAC  126 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~----l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~  126 (388)
                      +.+..+. -...-+.++|.+.|..    ||.|..||.|.+||...-      ..+.+...|.+.|..+.|++... .||+
T Consensus        56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS  134 (1049)
T KOG0307|consen   56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS  134 (1049)
T ss_pred             ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec
Confidence            4444444 2346889999997765    899999999999997652      23566778999999999999654 9999


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  206 (388)
                      |+.||.|.|||+........     ..-....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..   ....
T Consensus       135 Ga~~geI~iWDlnn~~tP~~-----~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~  206 (1049)
T KOG0307|consen  135 GADDGEILIWDLNKPETPFT-----PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGR  206 (1049)
T ss_pred             cCCCCcEEEeccCCcCCCCC-----CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCc
Confidence            99999999999998542211     112335678999999998778899999999999999999877776631   1222


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCC
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ..+..+.|+|++...+++++.|.   .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            45789999998888888887764   699999999989999999999999999999954 89999999999999999999


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccce
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  330 (388)
                      +.+..+..     ...++..+.|+|... .+++++-||.|.||.+....
T Consensus       287 Evl~~~p~-----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGELPA-----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeecCC-----CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99888754     334799999999887 88889999999999987654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.7e-26  Score=189.72  Aligned_cols=237  Identities=19%  Similarity=0.274  Sum_probs=204.7

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      ..-|.++...|||+.|++|+.-.++.|||+............  .....+++.+||.+..+++..||.|.|||+.+..  
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence            456889999999999999999999999999876654443333  3457788999999999999999999999998755  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                           ..+.+++|.+.+.||..+++| ..|-+|+-|++|+-||++++..+...      .....|.++.++| .+.++++
T Consensus       543 -----~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh------dF~SQIfSLg~cP-~~dWlav  609 (705)
T KOG0639|consen  543 -----LVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH------DFSSQIFSLGYCP-TGDWLAV  609 (705)
T ss_pred             -----eeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh------hhhhhheecccCC-Cccceee
Confidence                 788999999999999999998 66999999999999999998877664      6778899999999 8899999


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                      |-.++.+.+......  ....+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+....      ..+.|.++.
T Consensus       610 GMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------E~SsVlsCD  681 (705)
T KOG0639|consen  610 GMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCD  681 (705)
T ss_pred             ecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------ccCcceeee
Confidence            999999998887644  455677799999999999999999999999999999988887665542      334599999


Q ss_pred             ecCCCCEEEEEecCCcEEEEEc
Q 016522          305 FSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      ++.|.++|++|+.|....+|.+
T Consensus       682 IS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  682 ISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eccCceEEEecCCCcceEEEEE
Confidence            9999999999999998888864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=2.1e-25  Score=176.80  Aligned_cols=255  Identities=21%  Similarity=0.304  Sum_probs=190.9

Q ss_pred             CCccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCC---------CCCCCCceeEEecccccceEEEEEEeCCCceEEE
Q 016522          108 PCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus       108 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (388)
                      |.+.+..+.-++-+  .+.++-+..|.|.||++...-         ..........++.+|...=..++|+|-....+++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            45566777666654  455556778999999987522         1223455677888999999999999965556889


Q ss_pred             eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeE
Q 016522          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNT  255 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~  255 (388)
                      |..-+.|++|...++....--..  ..+|...|-.++|+|....+|++|+.||+|+|||+|.+ ++.....+.|.+.|+.
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~P--f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRP--FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             CccccceEeeeeccCceeecCcc--ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            98889999999988754332211  15799999999999999999999999999999999987 3344455889999999


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEECCCC---ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceE
Q 016522          256 VKFFPDGNRFGTGSDDGTCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      |.|+.+..+|++|+.||+++|||++.-   +++..+..+     ..+|+++.|+|... .|++++.|..|.+||+....-
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-----k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-----KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-----cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999998889999999999999999864   455566443     44699999999654 888889999999999863221


Q ss_pred             --------Eee---ccC-CCCCc--CCCeeEEEECCC-CCeEEEccCCCeEEEe
Q 016522          332 --------VLN---LGS-LQNSH--EGRITCLGLSAD-GSALCTGSWDTNLKVS  370 (388)
Q Consensus       332 --------~~~---~~~-~~~~~--~~~v~~~~~~~~-~~~l~s~~~dg~v~iw  370 (388)
                              ...   +.. +..-|  ...+..+.|++. ..+|++.+.|| +.||
T Consensus       383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence                    001   100 01223  356888999984 34788888888 4444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.7e-27  Score=209.04  Aligned_cols=290  Identities=16%  Similarity=0.261  Sum_probs=222.9

Q ss_pred             eEEEeCCCCC-eEEEE----------eCCCcEEEEECC--CCC----eeeEeeeCCccEEEEEECCCCCE----EEEeeC
Q 016522           71 YSLDWTSERN-RIVSA----------SQDGRLIVWNAL--TSQ----KTHAIKLPCAWVMTCAFSPTGQS----VACGGL  129 (388)
Q Consensus        71 ~~~~~~~~~~-~l~t~----------~~dg~v~iwd~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~  129 (388)
                      -.++|+|.+. ++++|          +.+.++-||.+.  +.+    .+..+. .......++|.+.|..    |+.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence            3578888875 55544          335566666543  222    222222 2345889999997765    888999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      ||.|.+||...-. .............|.+.|..+.|++..++++++|+.||.|.|||+.+.+......   .....+.|
T Consensus        89 dG~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI  164 (1049)
T KOG0307|consen   89 DGNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEI  164 (1049)
T ss_pred             CCceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccc
Confidence            9999999988631 2334556777889999999999999998899999999999999998855444432   13467889


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--CeeEEEEccCC-CEEEEeeCCC---cEEEEECCCCc
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDG-NRFGTGSDDG---TCRLFDIRTGH  283 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~  283 (388)
                      .+++|+.....+|++++.+|.+.|||++.. +++..+..+.+  .+..++|+|+. ..|++++.|.   .|.+||+|...
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            999999878899999999999999999987 66666665544  47789999965 4566666554   59999998755


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEc
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG  361 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~  361 (388)
                      .......    .|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+    ......+..+.|+|... .++.+
T Consensus       244 sP~k~~~----~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~----p~~~nW~fdv~w~pr~P~~~A~a  315 (1049)
T KOG0307|consen  244 SPLKILE----GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL----PAQGNWCFDVQWCPRNPSVMAAA  315 (1049)
T ss_pred             Cchhhhc----ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec----CCCCcceeeeeecCCCcchhhhh
Confidence            4433332    344469999999977 68999999999999999999999999    56678899999999554 88899


Q ss_pred             cCCCeEEEeccce
Q 016522          362 SWDTNLKVSLHYY  374 (388)
Q Consensus       362 ~~dg~v~iw~~~~  374 (388)
                      +.||.|.|+....
T Consensus       316 sfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  316 SFDGKISIYSLQG  328 (1049)
T ss_pred             eeccceeeeeeec
Confidence            9999999998643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=181.44  Aligned_cols=272  Identities=18%  Similarity=0.159  Sum_probs=203.6

Q ss_pred             ECCCCCeeeEeeeCCccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc
Q 016522           95 NALTSQKTHAIKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT  172 (388)
Q Consensus        95 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  172 (388)
                      |+.+-.....++.+.++|++++|+|..  +++++|..-|.|-+||+.+..   ....-...+..|..+|.++.|+|.+..
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---KDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---CccCceEEeccCCccccceEecCCChh
Confidence            334444556667788999999999954  688899999999999997422   122345667889999999999999888


Q ss_pred             eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (388)
Q Consensus       173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (388)
                      .+++.+.||+|+.-|++.+.....+..   ......+..+.++. +...++.+..=|...+||++..+.....+..|...
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhc---CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence            999999999999999988754433311   12445567777776 44455556666699999999997778888889999


Q ss_pred             eeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc----
Q 016522          253 VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL----  327 (388)
Q Consensus       253 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----  327 (388)
                      |.+++++| ...+|++++.|++.+|||++........ ......|...|.+..|||++..|++.+.|..|+|||..    
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            99999999 5667999999999999999875444320 11123455679999999998889999999999999973    


Q ss_pred             cceEEeeccC--CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          328 LAKVVLNLGS--LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       328 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ...+...+.-  ....|- .....+|.|+..++++|-.-..|-|++....
T Consensus       404 ~~~p~~~I~Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  404 KDEPLGTIPHNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             cCCccceeeccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            2333333210  000111 2345689999999999999988999986543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.2e-25  Score=177.02  Aligned_cols=300  Identities=15%  Similarity=0.180  Sum_probs=229.1

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC------CCCeeeEeee-CCccEEEEEECCCCCEEEEeeCC
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      -+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++      +.+++..... |...|.|++|.....++++|+.+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3456788999999999999999999999999999999974      3455554433 44789999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEeccc---ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT  206 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~  206 (388)
                      ++|..-|+++..        ......|   .+.|..+..+|. ++.+++.+.++.|.+||++... ....+.   .....
T Consensus       127 ~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~  194 (609)
T KOG4227|consen  127 GTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSG  194 (609)
T ss_pred             ceeEeeecccce--------eeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee---ecCCC
Confidence            999999999844        1222233   458999999998 5889999999999999998765 222221   14556


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                      .....+.|+|....+|++.+..+-+.+||.+....++....+..      ..-.++.|+|+|+.|.+.-....-.+||+-
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            77889999998899999999999999999998765554433222      223578899999999988777777889987


Q ss_pred             CCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-----------------------eEEeec
Q 016522          281 TGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----------------------KVVLNL  335 (388)
Q Consensus       281 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~  335 (388)
                      +..+......+..  .-....+.+++|..+- -+++|+.+-.|++|.+...                       +.+..+
T Consensus       275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence            7544332222111  1122346777886554 4899999999999986421                       111222


Q ss_pred             cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                          ++|.+-++.+.|+|...+|++.|....++||.++-
T Consensus       354 ----rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  354 ----RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             ----ecccccccceeecCCcceEeccchhhheecccccc
Confidence                78999999999999999999999999999999764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=184.44  Aligned_cols=229  Identities=26%  Similarity=0.377  Sum_probs=173.9

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECC--CCCEEEEeeCCCcE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSVC  133 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i  133 (388)
                      +.....|.||++.|+|++|+.+|.+|++|+.|-.+.|||....++++.+. +|.+.|.++.|-|  +.+.+++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            45667899999999999999999999999999999999999888888774 7889999999988  56789999999999


Q ss_pred             EEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe---eccc--ccCC
Q 016522          134 SIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF---GGEF--QSGH  205 (388)
Q Consensus       134 ~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~--~~~~  205 (388)
                      +++|+...+..   .+.......+..|...|..++..|++++.+.+++.||+++-+|++....-..-   ....  ....
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            99999864321   12223445567899999999999999899999999999999999874211100   0000  0122


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------------ceEEEe-ccc-----------CCeeEE
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------------AVRTFH-GHE-----------GDVNTV  256 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-----------~~i~~~  256 (388)
                      --...++.++|.+..+|++|+.|-..++||.+...+                 ++..+. +|.           ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            245678999999999999999999999999542210                 122221 121           114668


Q ss_pred             EEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      +|+|+|.-|++.-....|+++|+..++..
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            89999988777666668999998765433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.94  E-value=7.2e-25  Score=175.41  Aligned_cols=289  Identities=21%  Similarity=0.300  Sum_probs=212.9

Q ss_pred             cCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC---------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        67 ~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      ..+|..+.|.++.. .|+||+.|..|++|.+..+.         ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35899999999776 99999999999999875432         233456788999999999999999999999999999


Q ss_pred             eCCCCC---------CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          137 NLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       137 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      ....-.         .....+...+.+.+|...|..++|+|++ .++++++.|..+++||+..++....+     ..|..
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~-----~dh~~  166 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL-----DDHEH  166 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec-----ccccc
Confidence            987211         0122355677788999999999999996 78999999999999999999999988     89999


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-------------------ccc----CCeeEEEEccCCCE
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------------------GHE----GDVNTVKFFPDGNR  264 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~----~~i~~~~~~~~~~~  264 (388)
                      .+..++|.| .++++++-+.|...+.+++... +.+....                   -|.    .-...++|+|+|.+
T Consensus       167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccceeecch-hhhhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            999999999 8889999888887777766533 1111100                   011    12456889999999


Q ss_pred             EEEeeC----CCc-----EEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecC------------------CCCEEEEEe
Q 016522          265 FGTGSD----DGT-----CRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSI------------------SGRLLFAGY  316 (388)
Q Consensus       265 l~~~~~----dg~-----i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~  316 (388)
                      +++.+.    ++.     .++|+-...+ +...+     +....+...+.|+|                  -+-.+|+++
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l-----p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt  319 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL-----PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT  319 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeec-----CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence            988642    222     2333322111 11111     11111233333333                  233455665


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      . ..|++||.++..++....   .-|-..|++++|++||..|+..+.||...+-..
T Consensus       320 ~-~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  320 K-NSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             c-ceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence            4 489999999988887775   678899999999999999999999998776543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.8e-25  Score=169.50  Aligned_cols=264  Identities=18%  Similarity=0.248  Sum_probs=188.9

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      ..+++|...|++++|+.||++|++++.|+.|++|+++.-..+...........   +-.+.+.|.||...++++.-...+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEccCCE
Confidence            35678999999999999999999999999999999987432211111111112   245678999998887888888888


Q ss_pred             EEEEecCCCce---EEEe----ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeE
Q 016522          183 CVLWDITTGLR---TSVF----GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT  255 (388)
Q Consensus       183 v~i~d~~~~~~---~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~  255 (388)
                      +++|.+...+.   ...+    ..++...|...+..+-... +..++++++.|..|.+|+++ + +.+..+......-+.
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C-ceeeeeccccccccc
Confidence            99997654321   1111    1123356667777777665 88999999999999999998 4 788888877777888


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc---
Q 016522          256 VKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---  329 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  329 (388)
                      .+.+|+|+++++++.--.|++|.+--   |............+|.+.|..++|+++...+++.+.||++++||+.-.   
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            99999999999999988999998632   221111111222456778999999999999999999999999997532   


Q ss_pred             -e---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          330 -K---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       330 -~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                       +   .+.........-.+....++++|+|+.|+.+. ...++++...
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se  360 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE  360 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc
Confidence             1   11111111122334455899999999877654 5667777643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=185.22  Aligned_cols=274  Identities=13%  Similarity=0.213  Sum_probs=216.5

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.+++|+.+|+.+++|+.|..|.+|...-.       
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-------   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-------   85 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence            79999999999988877654 7999999999999999999999999999999999999999999999986642       


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                        -.....|.+.|.||.|+|-. +.+++++-. ..-+|.........       ......+.+.+|.. ++.+++.|-.+
T Consensus        86 --G~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-------~kss~R~~~CsWtn-DGqylalG~~n  153 (1081)
T KOG1538|consen   86 --GILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-------HKSSSRIICCSWTN-DGQYLALGMFN  153 (1081)
T ss_pred             --ceeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-------hhhheeEEEeeecC-CCcEEEEeccC
Confidence              22335799999999999975 667777653 35678766543322       23456788899997 99999999999


Q ss_pred             CceEEEECCCCCcce--EEEecccCCeeEEEEccCC-----CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          229 STARLWDTRVASRAV--RTFHGHEGDVNTVKFFPDG-----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       229 g~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      |+|.+-+-... ..+  ..-.+.+++|.+++|+|..     ..+++.....++.+|.+. |+.+..-....     -...
T Consensus       154 GTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~-----FdP~  226 (1081)
T KOG1538|consen  154 GTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALN-----FDPC  226 (1081)
T ss_pred             ceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCC-----CCch
Confidence            99999865433 222  2223467899999999942     467888888888888876 34333221111     1257


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |+.+.++|.++..|+.|+.+.+|. +.|-.+.++    ......|+.++..|++++++.|+.||+|.-|+.-+
T Consensus       227 CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  227 CISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             hheeccCCcEEEEccCCCceEEEe-ecCeEEeec----cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            888999999999999999999997 466667776    45677899999999999999999999999887544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.3e-24  Score=190.11  Aligned_cols=304  Identities=15%  Similarity=0.210  Sum_probs=225.1

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSP--TGQSVACGGLDSVCSIF  136 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  136 (388)
                      ...+...+-..+.|+|-...++++...-.|++||.+.++....+..+   ...|+.+.+-.  |..++++|+.||.|+||
T Consensus      1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence            33445557778899998889999997789999999999988777654   35688888855  55789999999999999


Q ss_pred             eCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          137 NLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      +-......  ...+.....       +..+.-.-+.|.... .+|+++|.-..|+|||.........++    .+....+
T Consensus      1139 k~y~~~~~--~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP----~~s~t~v 1211 (1387)
T KOG1517|consen 1139 KDYADKWK--KPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP----YGSSTLV 1211 (1387)
T ss_pred             cccccccC--CceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc----cCCCccc
Confidence            87654311  111222111       111112345676665 456666668899999999888877765    4567778


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCC--eeEEEEccCCCE-EEEeeCCCcEEEEECCCCce
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~  284 (388)
                      +++..+...++.+++|..||.|++||.|....  .+...+.|+..  |..+.+.+.|-- |++|+.||.|++||++....
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            88888776789999999999999999987644  67788889887  999999986654 99999999999999998522


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc---CCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      ...+.....-...+..+++..+++...+|+|+. +.|.||++.. +.+..+.   .+.....+.+.|++|+|..-+||+|
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            222221111111224899999999999999988 8999999754 3332221   2223345678999999999999999


Q ss_pred             cCCCeEEEeccce
Q 016522          362 SWDTNLKVSLHYY  374 (388)
Q Consensus       362 ~~dg~v~iw~~~~  374 (388)
                      +.|..|.||....
T Consensus      1370 ~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEK 1382 (1387)
T ss_pred             cCCceEEEeecCC
Confidence            9999999998764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=167.43  Aligned_cols=243  Identities=19%  Similarity=0.234  Sum_probs=189.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      ..|+.|++.|.+||+|+.||.|.+||+.+..       ..+.+.+|..+|++++|+++| +.|++++.|..|.+||+..+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence            7899999999999999999999999999854       678889999999999999997 78999999999999999999


Q ss_pred             ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc---cCCeeEEEEccCCCEEEEe
Q 016522          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---EGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~  268 (388)
                      .+...+      ...++|....|+|.+.+.+++.-.+..-.+.++..+...+......   +....+..|.+.|+++++|
T Consensus        98 s~l~ri------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   98 SPLKRI------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             CceeEE------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence            988887      5678999999999888887777666666666665432221111111   1112334688899999999


Q ss_pred             eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE---------eeccCCC
Q 016522          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---------LNLGSLQ  339 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~  339 (388)
                      ...|.+.++|..+.+++..+....    ...|..+.++..|++++.-+.|..|+.|+++.--..         ..++-  
T Consensus       172 tsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD--  245 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD--  245 (405)
T ss_pred             cCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH--
Confidence            999999999999998887776543    234889999999999999999999999997631111         11100  


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522          340 NSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHYY  374 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~  374 (388)
                      --....-.+++|+.+|.|++.|+. -..++||....
T Consensus       246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             HHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            011234568899999999988874 57789997543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=180.81  Aligned_cols=263  Identities=16%  Similarity=0.244  Sum_probs=187.9

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--eeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEe
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFN  137 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~  137 (388)
                      +....|..+|..+.|-|....|++++.|.++++||+.+.+....  +.+|...|.+++|.|.. ..|++|+.||.|.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            56678999999999999777999999999999999999888776  88999999999999954 6788999999999999


Q ss_pred             CCCCCCC--------------C---CCCc---eeEEecccccceEE---EEEEeCCCceEEEeeC-CCeEEEEecCCCce
Q 016522          138 LNSPTDK--------------D---GNLP---VSRMLSGHKGYVSC---CQYVPDEDTHLITSSG-DQTCVLWDITTGLR  193 (388)
Q Consensus       138 ~~~~~~~--------------~---~~~~---~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~  193 (388)
                      ++.....              .   ...+   -......+...|.+   +.+..|. ..|++++. |+.|++||+++...
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence            9764310              0   0000   01112234444444   4455554 56888777 99999999998755


Q ss_pred             EEEeecc------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCC--eeEEEEccCCCE
Q 016522          194 TSVFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGD--VNTVKFFPDGNR  264 (388)
Q Consensus       194 ~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~  264 (388)
                      .......      ........+.++.... .+.+|++.+.|+.|++|++.... .++..+.++...  -..-..+|++.+
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            4333211      0111234567777776 55666667779999999998653 234444443322  223356889999


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  329 (388)
                      +++|+.|....+|.+.+.+........    +...|++++|.|... -+++++.|..+++|++..+
T Consensus       332 l~SgSsd~~ayiw~vs~~e~~~~~l~G----ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPEAPPALLLG----HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeccCCCcceeeeeecCccCChhhhhC----cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            999999999999999887655544432    334599999987543 4566699999999998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=174.07  Aligned_cols=244  Identities=19%  Similarity=0.298  Sum_probs=200.1

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      .+.|+++.|+|....+++++.||.+++|.++....     +....+.-...+|.+.+|.|+|...+++++.....+.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            36799999999999999999999999999987442     2455555667899999999998768999999999999999


Q ss_pred             CCCceEEEeecccccCC-ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522          189 TTGLRTSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  267 (388)
                      .+.+....-+.   .++ ...+..+.+++ ++++++..+..|.|.+....+. ..+..+. -++.|..++|+.+++.|++
T Consensus       288 e~ak~~k~~~~---~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  288 ETAKVTKLKPP---YGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             cccccccccCC---CCcccchhheeEecC-CCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEE
Confidence            98866544322   122 34577788888 8889999999999999998877 6777766 4678999999999999999


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc------ceEEeeccCCCCC
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNS  341 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~  341 (388)
                      ++.+|.|.+||++...++..+......    .-++++.++++.|+|+|+..|.|.|||.++      .+++..+    ..
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dN  433 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DN  433 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hh
Confidence            999999999999999888887664432    357888999999999999999999999653      3455555    44


Q ss_pred             cCCCeeEEEECCCCCeEEEccC--CCeEEEec
Q 016522          342 HEGRITCLGLSADGSALCTGSW--DTNLKVSL  371 (388)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~s~~~--dg~v~iw~  371 (388)
                      -...|++|.|++|+++|+.++.  +..+++-+
T Consensus       434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             hheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            5678999999999999998874  56677654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-25  Score=181.68  Aligned_cols=311  Identities=17%  Similarity=0.305  Sum_probs=240.0

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECC--CCCEEEEeeCCCc
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP--TGQSVACGGLDSV  132 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~  132 (388)
                      .+.....|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++.....+ .+|...|..-.|-|  +.+.+++++.||.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            45566788999999999999999999999999999999999998877666 46888888888887  4477999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc---Ce
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DV  209 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~i  209 (388)
                      +++=.+....    ...-...+..|.++|..++.-|+...-|.+++.|+.+.-+|++.+.....+...  ..+..   ..
T Consensus       211 vr~s~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L  284 (559)
T KOG1334|consen  211 VRVSEILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGL  284 (559)
T ss_pred             eeeeeecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceee
Confidence            9998776533    122345677899999999999998888999999999999999988655544311  23333   67


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-----eEEEec------ccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHG------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      ..++..|.+.+.+++|+.|..+++||.+...+.     +..+..      ....|++++|+.++.-|.++..|-.|+++.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            889999988899999999999999998754221     222222      234699999998777777777888899995


Q ss_pred             CCCCce----------eeEeeeccCCCCCCCeEEEEe-cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522          279 IRTGHQ----------LQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       279 ~~~~~~----------~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                      -..+.-          ........+......|..+-| -|...|+++|+.-|.|.||+-.+++.+.-+    .+...-|+
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~VVN  440 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHVVN  440 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccceEe
Confidence            432211          000000111222334666664 678889999999999999999999888777    55556999


Q ss_pred             EEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          348 CLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       348 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      ||.-+|--..||+.|-|.-|+||.+....
T Consensus       441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ccCCCCCCchhhccCCccceeeecCCccc
Confidence            99999999999999999999999985433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1.1e-24  Score=184.18  Aligned_cols=126  Identities=19%  Similarity=0.287  Sum_probs=105.0

Q ss_pred             eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCee------eEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKT------HAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      +.+..|.+|.+.|+.+.|+| +..+|||++.|..|+||.+..+...      ..+...+-.|.++.|+|...-|+..+..
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence            34567889999999999999 4458999999999999998744221      2223344568899999988878888889


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      |++++||+.+.+       ....+.+|...|.++.|+.|| .++++++.|..|+|||.+..
T Consensus       150 g~v~i~D~stqk-------~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~  202 (1012)
T KOG1445|consen  150 GSVYITDISTQK-------TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRAS  202 (1012)
T ss_pred             ceEEEEEcccCc-------eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccC
Confidence            999999999866       567788999999999999997 78999999999999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.93  E-value=7.6e-23  Score=184.90  Aligned_cols=318  Identities=18%  Similarity=0.226  Sum_probs=221.6

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCC-------eeeEeeeCCccEEEEEECC
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~  119 (388)
                      -+..|+|. +..+..|..|+..|..++.+++. .+++|||.||+|++||...-.       ...++......+.++...+
T Consensus      1030 p~~gW~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1030 PPPGWNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCCCCCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            34446665 47788899999999999998765 899999999999999985421       2233444567899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceE-EEEEEeCCCc-eEEEeeCCCeEEEEecCCCceEEE
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVS-CCQYVPDEDT-HLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      .+..+|+++.||.|.+.+++............+....+ .+.+. .-+|...... .++.+..-+.|..||++.......
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            99999999999999999998732111111122222222 22333 3344433333 688888899999999998766655


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccC---CCEEEEee--C
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPD---GNRFGTGS--D  270 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~--~  270 (388)
                      ...   ....+.|++++.+| .+++++.|+..|.+.+||+|-. .++..+ .++..+++.+..+|-   ....++++  .
T Consensus      1189 lk~---~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1189 LKN---QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred             hhc---CccccceeEEEecC-CceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence            532   34567899999999 8889999999999999999987 555444 345678888888772   24454444  4


Q ss_pred             CCcEEEEECCCCceeeEeeeccCC--------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe-ec
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL-NL  335 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~  335 (388)
                      .+.|.+|++.+|.....+....+.              ...-.....++...+.++.+|+.|..|+.||....+... ..
T Consensus      1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~ 1343 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAV 1343 (1431)
T ss_pred             CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccc
Confidence            678999999998777666554111              011112233444456699999999999999975433220 00


Q ss_pred             c---------------------------------------------------CCCCCcCCCeeEEEECCC-CCeEEEccC
Q 016522          336 G---------------------------------------------------SLQNSHEGRITCLGLSAD-GSALCTGSW  363 (388)
Q Consensus       336 ~---------------------------------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~  363 (388)
                      .                                                   .....|..+|++|++... ..+|++++.
T Consensus      1344 ~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~ 1423 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSR 1423 (1431)
T ss_pred             cCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecC
Confidence            0                                                   001237788999988653 458999999


Q ss_pred             CCeEEEec
Q 016522          364 DTNLKVSL  371 (388)
Q Consensus       364 dg~v~iw~  371 (388)
                      ||.|+||.
T Consensus      1424 dG~IkiWk 1431 (1431)
T KOG1240|consen 1424 DGVIKIWK 1431 (1431)
T ss_pred             CCeeeecC
Confidence            99999994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=8.5e-24  Score=173.67  Aligned_cols=265  Identities=16%  Similarity=0.178  Sum_probs=199.2

Q ss_pred             CCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCE-EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (388)
                      ..++++||+...+....+..+  ...+.++.|.....+ +++.+.|..+++|.-...   ..+.+......+.  .-.|+
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~---~~~Vp~~~k~~gd--~~~Cv   85 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK---TPEVPRVRKLTGD--NAFCV   85 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC---CCccceeeccccc--hHHHH
Confidence            347999998765554444333  234888999876642 233456778899987653   2334444444443  33344


Q ss_pred             EEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE
Q 016522          165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  244 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  244 (388)
                      +..... .++++|+..+.|+|||++...+.+.+     .+|...|+++.++. ...++++++..|.|.+..+.++ ....
T Consensus        86 ~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~-~~tt  157 (673)
T KOG4378|consen   86 ACASQS-LYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK-QKTT  157 (673)
T ss_pred             hhhhcc-eeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC-cccc
Confidence            444433 68999999999999999966666655     79999999999997 7889999999999999999877 4444


Q ss_pred             EEecc-cCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcE
Q 016522          245 TFHGH-EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDC  321 (388)
Q Consensus       245 ~~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i  321 (388)
                      .+... ...|.-+.|+|..+ +|.+++.+|.|.+||+....+...+..    .|..+...++|+|... +|++.+.|.+|
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~----~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE----AHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh----hccCCcCcceecCCccceEEEecccceE
Confidence            45433 34566899999655 566788999999999988777766544    3445789999999876 77888999999


Q ss_pred             EEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++||....+....+     .-..+.+.++|+++|.+|+.|...|.|..|+...
T Consensus       234 ~~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  234 NIYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             EEeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            99999877776665     3456899999999999999999999999998654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.92  E-value=2.3e-22  Score=175.59  Aligned_cols=276  Identities=19%  Similarity=0.205  Sum_probs=202.2

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      +.+.+|++.........-.....|+++.|+| +..+++.|..+|.|.+||+..+.... ..........|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence            4799999987744444444556799999999 56778888899999999999866321 223344556799999999998


Q ss_pred             eCCC-ceEEEeeCCCeEEEEecCCCceE-EEeeccc------ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEE---C
Q 016522          168 PDED-THLITSSGDQTCVLWDITTGLRT-SVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD---T  236 (388)
Q Consensus       168 ~~~~-~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d---~  236 (388)
                      .+.. .-+++++.||.|..|+++.-... .......      .......+++++|.+.+.+.|++|+.+|.|.--+   .
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7532 23889999999999987754321 1111110      1234456899999999999999999999988733   2


Q ss_pred             CCCC----cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCC-
Q 016522          237 RVAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR-  310 (388)
Q Consensus       237 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  310 (388)
                      +...    +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+...     ...+++++|||... 
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~-----~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS-----PDYVTDVAWSPTRPA  455 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-----cceeeeeEEcCcCce
Confidence            2222    2244566789999999999966666555559999999987 55555444332     23499999999876 


Q ss_pred             EEEEEecCCcEEEEEcccce--EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          311 LLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .++++..||.+.+||+....  ++.+.    ..+....+.+.|+++|+.|+.|...|.+.+|....
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~----~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQ----KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccc----cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            77888889999999987543  34433    34466778888999999999999999999998754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.4e-24  Score=177.39  Aligned_cols=266  Identities=24%  Similarity=0.331  Sum_probs=202.0

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      ...++..|.+.|++++|.|-...|++++.||++.+|++..        -+++.++++|.++|.|+++.+++..+++|+-|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            3347888999999999999999999999999999999932        34678899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCC---ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          131 SVCSIFNLNSPTDKDGNL---PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      |+|+.|++..........   .....+.+|.+.|+.+++++.. ..|++++.||+|+.|+...... .++..   ....+
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~---~~e~g  440 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGE---PKEHG  440 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCC---ccccC
Confidence            999999887433322222   4556788999999999999985 5699999999999999877666 34422   12233


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                      ...++.+-.......++...-+.-.+++.... ..+..+..       ....+..+.++|...+.+++..|+.|+++|..
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            44555555433333444333333334444333 22222221       12346778999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ++..+.....+..     .++++++.|+|.+|++|+.|+.+++|.+....++...
T Consensus       520 ~~~~l~s~~a~~~-----svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  520 TGKILHSMVAHKD-----SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ccccchheeeccc-----eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            9998877755443     4999999999999999999999999998776666554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=160.31  Aligned_cols=262  Identities=16%  Similarity=0.255  Sum_probs=193.9

Q ss_pred             eeccccccCCeeEEEeCCCC-CeEEEEeCC-------CcEEEEECCCC---------CeeeEee-eCCccEEEEEECCCC
Q 016522           60 CRTLQGHAGKVYSLDWTSER-NRIVSASQD-------GRLIVWNALTS---------QKTHAIK-LPCAWVMTCAFSPTG  121 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~-~~l~t~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~  121 (388)
                      .+.|..|.+.|..++-+|-. +.|+|+..+       -.+.||.+...         +.+..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            46788899999999999954 566665442       24679987542         2233333 334579999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ..+++-. |..|.+|++........+..... ...+....++-+|+|..+...+....|+++..||+++......+.   
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~---  210 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE---  210 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh---
Confidence            9998876 78899999998664322222221 223566788889999433334555678999999999887776664   


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  280 (388)
                       ..|...+..+.|+|....+|++++.||.|++||.|..+.++..+.+|...|.++.|+| ..++|++|+.|..|.+|...
T Consensus       211 -dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  211 -DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             -hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence             6888999999999988889999999999999999999999999999999999999999 56788899999999999764


Q ss_pred             CCceeeEee------------------------eccCCCCCCCeEEEEecCCCCE-EEEEecCCcEEEEEcc
Q 016522          281 TGHQLQVYY------------------------QQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTL  327 (388)
Q Consensus       281 ~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~  327 (388)
                      .-.....+.                        ...-..+...|.+++|+.-..+ +|+-+.||++.|=.+.
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            321100000                        0011235567999999987774 5666789998876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=5.4e-23  Score=157.90  Aligned_cols=246  Identities=15%  Similarity=0.247  Sum_probs=188.5

Q ss_pred             cccCCeeEEEeCCCC-----CeEEEEeCCCcEEEEECCCCCeee----E-----eeeCCccEEEEEECC-CCCEEEEeeC
Q 016522           65 GHAGKVYSLDWTSER-----NRIVSASQDGRLIVWNALTSQKTH----A-----IKLPCAWVMTCAFSP-TGQSVACGGL  129 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~-----~~l~t~~~dg~v~iwd~~~~~~~~----~-----~~~~~~~v~~~~~~~-~~~~l~~~~~  129 (388)
                      .|.-+++.+.|.|+.     ++|||.+  ..+++|.+...+...    .     -..+.+++++..|+. +.+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            488899999999976     3566654  379999886322111    1     123557899999987 6789999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      |-++.|||++.+.    ...+...+-.|..+|.+++|...+...+++.+.||.|++||++...-...+...  .....+.
T Consensus       172 DTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pL  245 (364)
T KOG0290|consen  172 DTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPL  245 (364)
T ss_pred             cCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcc
Confidence            9999999999852    122567788999999999999988889999999999999999987665555321  2225678


Q ss_pred             EEEEeeCCCCcEEEEeeCC-CceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          210 LSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      ..++|++.+.+++++-..| ..|.+.|+|.+..++..+.+|.+.|++++|.| ....|++++.|....+||+.+.-....
T Consensus       246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG  325 (364)
T ss_pred             eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence            8999999899999886655 57999999999999999999999999999999 667899999999999999976433111


Q ss_pred             eeeccCCCCCCCeEEEEecCC-CCEEEEEecC
Q 016522          288 YYQQHGENEIPHVTSIAFSIS-GRLLFAGYSN  318 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  318 (388)
                      ......-.....|..+.|++. +.+++++...
T Consensus       326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             CCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            110000112345999999964 5588777543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=1.2e-20  Score=168.47  Aligned_cols=292  Identities=32%  Similarity=0.536  Sum_probs=231.6

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-eeeEeeeCCc-cEEEEEE-CCCCC-EEEEeeC-CCcEEEE
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCA-WVMTCAF-SPTGQ-SVACGGL-DSVCSIF  136 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~~~~-dg~i~vw  136 (388)
                      .+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999998887 6666666443 6777777 88887 5555444 9999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      +...      .......+..|...|..+.|+|++. .+++++. |+.+++|+...+.....+     ..|...+.+++++
T Consensus       140 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~  207 (466)
T COG2319         140 DLST------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS  207 (466)
T ss_pred             EecC------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEee-----ccCCCceEEEEEc
Confidence            9986      1126777889999999999999974 6777775 999999999987777777     6689999999999


Q ss_pred             CCCCc-EEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-eeEeeecc
Q 016522          216 GSNSR-MFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH  292 (388)
Q Consensus       216 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  292 (388)
                      | ++. ++++++.|+.+++||.... .... .+..|.... ...|+|++.++++++.|+.+++|++..... ....    
T Consensus       208 ~-~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----  280 (466)
T COG2319         208 P-DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----  280 (466)
T ss_pred             C-CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence            7 555 5555599999999998855 5555 577787775 448999998999999999999999987765 3333    


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc-cCCCeEEEec
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVSL  371 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~  371 (388)
                       ..+...+.++.|+|++..+++++.|+.+.+||...........  ...|...+..+.|.+++..++.+ ..|+.+.+|.
T Consensus       281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence             2234569999999988888889889899999988877666552  13677789999994332556655 6889999988


Q ss_pred             ccee
Q 016522          372 HYYI  375 (388)
Q Consensus       372 ~~~~  375 (388)
                      ....
T Consensus       358 ~~~~  361 (466)
T COG2319         358 LRTG  361 (466)
T ss_pred             cCCC
Confidence            6653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=6.6e-23  Score=174.49  Aligned_cols=260  Identities=15%  Similarity=0.258  Sum_probs=199.6

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      ..+.....|++.+.....+|+||++-|+|++|+.||+++|+|+.|..|.+|+-.- +-+. -..|...|.|+.|+|-...
T Consensus        30 AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L-kYSH~D~IQCMsFNP~~h~  107 (1081)
T KOG1538|consen   30 AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL-KYSHNDAIQCMSFNPITHQ  107 (1081)
T ss_pred             ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee-eeccCCeeeEeecCchHHH
Confidence            3456677899999999999999999999999999999999999999999998432 2111 2358888999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      |++++-+ ..-+|..+...         .........+.+++|..|| ++++.|-.+|+|.+-+-.. +....+..+  .
T Consensus       108 LasCsLs-dFglWS~~qK~---------V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~g-Eek~~I~Rp--g  173 (1081)
T KOG1538|consen  108 LASCSLS-DFGLWSPEQKS---------VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNG-EEKVKIERP--G  173 (1081)
T ss_pred             hhhcchh-hccccChhhhh---------HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCC-CcceEEeCC--C
Confidence            9988754 46688876522         1111224578899999997 7899999999999987543 333333221  4


Q ss_pred             CCccCeEEEEeeCCC----CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          204 GHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                      +...+|.+++|+|..    ...+++.....++.+|.+..  +.+..-..-.-...|+.+.|+|.++..|+.|+.+.+|. 
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-  250 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-  250 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-
Confidence            678899999999843    35677777777888887752  33332233334567899999999999999999999997 


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +.|-.+.+...     ...+|..++..|++++++.|+.||+|..|++-
T Consensus       251 R~GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  251 RDGVRLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ecCeEEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            55666655533     34479999999999999999999999998753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=5.9e-20  Score=163.95  Aligned_cols=302  Identities=33%  Similarity=0.551  Sum_probs=238.8

Q ss_pred             CCCCcccCCCC-ceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC-
Q 016522           46 GRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-  122 (388)
Q Consensus        46 ~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  122 (388)
                      +.....|+... ......+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|...+.+++|+|++. 
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            55777788887 8888999999999999999999998888886 99999999999888889999999999999999998 


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE  200 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~  200 (388)
                      .+++++.|+.|++||...+.       ... .+..|.... ...|++++ .++++++.|+.+++|+...... ...+   
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~---  280 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGK-------LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL---  280 (466)
T ss_pred             EEEEecCCCcEEEEECCCCc-------EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---
Confidence            55555999999999777432       344 577787775 44899987 6788999999999999987765 3333   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEccCCCEEEEe-eCCCcEEEE
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLF  277 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  277 (388)
                        ..|...+.++.+.| .+..+++++.|+.+.+||.... .......  .|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus       281 --~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  356 (466)
T COG2319         281 --SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW  356 (466)
T ss_pred             --ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence              46789999999998 6677777888899999998876 4444443  777789999994332456555 688899999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ++...........  ..    .+..+.+.+ ...+.. +..++.+.+|+...........    .+...+....+++++.
T Consensus       357 ~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  425 (466)
T COG2319         357 DLRTGKPLKTLEG--HS----NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD----GHTSRVTSLDFSPDGK  425 (466)
T ss_pred             ecCCCceeEEecC--Cc----eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc----CCCCcEEEEEECCCCc
Confidence            9988772222111  11    178888888 543333 6789999999999888877662    2227899999999999


Q ss_pred             eEEEccCCCeEEEeccce
Q 016522          357 ALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~~  374 (388)
                      .+++++.++.+++|....
T Consensus       426 ~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         426 SLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEEecCCCcEEEEeccC
Confidence            999999999999998765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=187.37  Aligned_cols=257  Identities=21%  Similarity=0.344  Sum_probs=199.8

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      .++.++.|.||..+|+|+.|...|.++++|+.|..|+||..+++.+....++|.+.|+.++.+.+.-++++++.|..|++
T Consensus       179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE-----
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-----  210 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~-----  210 (388)
                      |.+..+.       +...+.+|.+.|++++|+|-     .+.+.||++++||.+-...... +.........-+.     
T Consensus       259 Wrl~~~~-------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~-prp~~~~~~~~~~s~~~~  325 (1113)
T KOG0644|consen  259 WRLPDGA-------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYV-PRPLKFTEKDLVDSILFE  325 (1113)
T ss_pred             EecCCCc-------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccC-CCCCCcccccceeeeecc
Confidence            9999865       67788999999999999984     3788999999999871111110 0000001111111     


Q ss_pred             ---------------------EEEeeCCCC-----------cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE
Q 016522          211 ---------------------SVSISGSNS-----------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  258 (388)
Q Consensus       211 ---------------------~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~  258 (388)
                                           +++|.. +.           .+.+++-.+-.+.+|++..+ .....+.+|...+..+.+
T Consensus       326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~  403 (1113)
T KOG0644|consen  326 NNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDV  403 (1113)
T ss_pred             ccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeee
Confidence                                 122221 11           22222333445677777766 667777889999999999


Q ss_pred             cc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          259 FP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       259 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      +| +.....+++.||...|||+-.+.+++.+...+.     .+....||++|..++....-|.++|.....++..
T Consensus       404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-----kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-----KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             cCCCcHhhhhccCCCceEeeecccCCcceeeecccc-----eeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            99 555667889999999999999999888875443     3778899999999999999999999976555443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=1.5e-21  Score=149.98  Aligned_cols=280  Identities=20%  Similarity=0.244  Sum_probs=196.8

Q ss_pred             CCCcEEEEECCCCCe---eeEeeeCCccEEEEEECCCCC-EEEEeeCC-------CcEEEEeCCCCCCCCC--CCceeEE
Q 016522           87 QDGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQ-SVACGGLD-------SVCSIFNLNSPTDKDG--NLPVSRM  153 (388)
Q Consensus        87 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------g~i~vw~~~~~~~~~~--~~~~~~~  153 (388)
                      .|+.|.+.++.....   ...+..+.+.|..++-+|..+ .|+++..+       -.+.||.+..+.....  .+.....
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            467787777654332   234566778899999999654 44544331       2578999987543211  1222233


Q ss_pred             ec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeC-CCCcEEEEeeCCCc
Q 016522          154 LS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDST  230 (388)
Q Consensus       154 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~  230 (388)
                      +. .+-+.|.|+.|.|++++ +++-. |..|.+|++..+.. ...........+....++-+|+| .+++.+++ ..|++
T Consensus       118 Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~t  194 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDST  194 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCc
Confidence            33 45568999999998754 44443 88999999998766 44444433345677788899999 45666655 45899


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      +..||+|+..+....-.+|...|..+.|+|+.+ +|++++.||.|++||.+..+......    +.|...+.++.|+|..
T Consensus       195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----PGHSHWVWAVRFNPEH  270 (370)
T ss_pred             EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----CCCceEEEEEEecCcc
Confidence            999999988666667778999999999999655 67899999999999998765433222    4566689999999975


Q ss_pred             C-EEEEEecCCcEEEEEcccce---------------------EEeeccC----CCCCcCCCeeEEEECC-CCCeEEEcc
Q 016522          310 R-LLFAGYSNGDCYVWDTLLAK---------------------VVLNLGS----LQNSHEGRITCLGLSA-DGSALCTGS  362 (388)
Q Consensus       310 ~-~l~~~~~dg~i~i~d~~~~~---------------------~~~~~~~----~~~~~~~~v~~~~~~~-~~~~l~s~~  362 (388)
                      . +|++|+.|..|.+|....-.                     ....+.-    ....|++.|.+++|+. |.-.+|+-+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            4 88899999999999643211                     0000100    1146899999999987 556778899


Q ss_pred             CCCeEEEeccc
Q 016522          363 WDTNLKVSLHY  373 (388)
Q Consensus       363 ~dg~v~iw~~~  373 (388)
                      .||.+.|-...
T Consensus       351 YDGRviIs~V~  361 (370)
T KOG1007|consen  351 YDGRVIISSVP  361 (370)
T ss_pred             cCceEEeecCC
Confidence            99999987653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=5.7e-22  Score=158.45  Aligned_cols=215  Identities=20%  Similarity=0.269  Sum_probs=168.2

Q ss_pred             EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee--cccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (388)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  229 (388)
                      ....+|+++|..++|+|-+++.+++|+.|.+|.||++..+.....+.  .....+|...|.-+.|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            35679999999999999999999999999999999998764332221  1122799999999999999999999999999


Q ss_pred             ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      +|.+|++.++ ..+..+. |...|.+++|+.||.+|++.+.|..|+|||.++++.+..-..+.+.    .-..+.|-.+|
T Consensus       155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~----k~~Raifl~~g  228 (472)
T KOG0303|consen  155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA----KPARAIFLASG  228 (472)
T ss_pred             eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC----CcceeEEeccC
Confidence            9999999998 5555666 9999999999999999999999999999999999988877444332    24566677888


Q ss_pred             CEEEEEe---cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEEEeccce
Q 016522          310 RLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVSLHYY  374 (388)
Q Consensus       310 ~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~  374 (388)
                      .++-+|.   ++..+-+||..+.+....+..  -..++.|.---|.+|..++..+| .|+.|+.|....
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            8655554   356899999766443322211  12344566666788888776655 699999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8.7e-23  Score=170.26  Aligned_cols=265  Identities=18%  Similarity=0.281  Sum_probs=194.9

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (388)
                      .++..|...++.++|+|....|++++.||.+.+|+++.. ...........++.+|.++|.|+++.+++ ..+++|+.||
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg  366 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDG  366 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCc
Confidence            355677888999999999999999999999999999442 12234566788899999999999999987 6799999999


Q ss_pred             eEEEEecCCC------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCe
Q 016522          182 TCVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDV  253 (388)
Q Consensus       182 ~v~i~d~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i  253 (388)
                      +|+.|++...      .....+.. ...+|.+.+..+++++ ....|++++.||+++.|+......  ..+..  ..+..
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~P  442 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYP  442 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhcc-ceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc--cccCCccccCCc
Confidence            9999965422      11111111 1268999999999998 677799999999999999876633  22222  22233


Q ss_pred             eEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          254 NTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       254 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      .++.+-... .+.++...-+.-.+++.........+.....  ......+..+.++|.+.+.+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            455554322 2222222233333444444444443332211  1222457888999999999999999999999999999


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      ++...    ..|...++++++.|+|.+|++++.||.+++|......
T Consensus       523 ~l~s~----~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  523 ILHSM----VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cchhe----eeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            99888    7899999999999999999999999999999875433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3e-22  Score=168.23  Aligned_cols=252  Identities=15%  Similarity=0.208  Sum_probs=196.8

Q ss_pred             eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      +...+.+|.+.|.++...|.|..|++|+.||+|+||.+.++.       +..... ..+.|.|++|+|.++..++++...
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence            345568899999999999999999999999999999999876       444433 346899999999877666666665


Q ss_pred             CeEEEEecCCCceEE----------------------Eeec----------ccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          181 QTCVLWDITTGLRTS----------------------VFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       181 g~v~i~d~~~~~~~~----------------------~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      ..+.|.+..-|..+.                      .+..          .....|...|..+.|+. .|.+|++...+
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~  542 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPD  542 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccC
Confidence            556666543331100                      0000          01135778899999998 88999987654


Q ss_pred             ---CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          229 ---STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       229 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                         ..|.|+++... .....+....+.|.++.|+|...+|++++. ..|+|||+.....++.+....     ..|..+++
T Consensus       543 ~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-----kwiS~msi  615 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-----KWISSMSI  615 (733)
T ss_pred             CCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-----eeeeeeee
Confidence               47888988765 344555556678999999999888888876 579999999877766664433     35999999


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +|.|..|++|+.|+.+..||+.-. ++..++    ..|...+++++|++.-.++++|+.||.+.|+.-
T Consensus       616 hp~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             cCCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            999999999999999999999754 456666    789999999999999999999999999999973

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=4.8e-22  Score=154.93  Aligned_cols=239  Identities=21%  Similarity=0.376  Sum_probs=185.7

Q ss_pred             CCeeEEEeC-------CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-----ccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           68 GKVYSLDWT-------SERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        68 ~~v~~~~~~-------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ..|...+|-       |+.+++++.+.+.-|++||.-+|+....+..-.     ....+++|+|||.+|++| ....|++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            356666664       567899999999999999999999888776532     346789999999999987 4679999


Q ss_pred             EeCCCCCCCCCCCc-eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          136 FNLNSPTDKDGNLP-VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       136 w~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      +|+..+........ ..+-..+..+.|.+++|+|.....++.|+....+-||.-..+.+...+     .+|.+.|+.+.|
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----ggh~gGvThL~~  258 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----GGHGGGVTHLQW  258 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----cccCCCeeeEEe
Confidence            99955332211111 111133457889999999988778999999999999988888888887     799999999999


Q ss_pred             eCCCCcEEEEee-CCCceEEEECCCCCcceEEEecccC-CeeEEEE--ccCCCEEEEeeCCCcEEEEECCC-CceeeEee
Q 016522          215 SGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF--FPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYY  289 (388)
Q Consensus       215 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~  289 (388)
                      .+ +++.|++|. .+..|..||+|....++..+..|.. .-..|-|  .|++++|++|+.||.|++||+.+ +..+..+.
T Consensus       259 ~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~  337 (406)
T KOG2919|consen  259 CE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG  337 (406)
T ss_pred             cc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence            99 666666665 4779999999998888888888876 4445555  57899999999999999999988 55444443


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      .     +...++.++++|--.++|+++..
T Consensus       338 ~-----~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  338 N-----YSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             c-----ccccccceecCcccceeeeccCc
Confidence            2     33458999999998888877643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=1.6e-21  Score=170.38  Aligned_cols=259  Identities=17%  Similarity=0.215  Sum_probs=190.9

Q ss_pred             ccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCe--eeE----eeeCCccEEEEEECCCC--CEEEEeeCCCcEEEE
Q 016522           66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK--THA----IKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIF  136 (388)
Q Consensus        66 h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw  136 (388)
                      -...|+|+.|+| +.+++|.|..+|.|.+||+..+..  ...    ...|..+++.+.|..+.  .-|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            456899999999 567888999999999999987665  222    23577889999996644  449999999999999


Q ss_pred             eCCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE--Ee-ecccccCCccC
Q 016522          137 NLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF-GGEFQSGHTAD  208 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~-~~~~~~~~~~~  208 (388)
                      +++.-..+..........     ......++++.|.+...+.++.|+.+|.|.--+-.......  .+ .......|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            987644221111111111     12235688999999888999999999998873322211111  11 01112578999


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      |.++.++|.....|++++ |.++++|.......++..+..+...+++++||| ....|+++..||.|.+||+........
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            999999998777887777 999999998844478888888888899999999 456788888999999999976544333


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .....   .....+.+.|+++|+.|++|...|.+++|++..
T Consensus       480 ~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  480 LSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            32211   133477888999999999999999999999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.90  E-value=3.8e-22  Score=165.61  Aligned_cols=264  Identities=20%  Similarity=0.320  Sum_probs=193.3

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE-ECC-------CCCEEEEeeCCCcEEEE
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA-FSP-------TGQSVACGGLDSVCSIF  136 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~-------~~~~l~~~~~dg~i~vw  136 (388)
                      .|...|.|+.|+.....+.++ .|..+.+|.-.+......+..+...+.... .-+       ....|+.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            367778899999877655554 555666665444444444433333222211 111       23578889999999998


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      +-..        .+.+....|.+.+.+-.|+|+| .-|++++.||.|++|.- +|....++     .....+|.|++|.|
T Consensus        91 ~k~~--------rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRStl-----~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   91 NKSA--------RVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRSTV-----VQNEESIRCARWAP  155 (737)
T ss_pred             cccc--------hhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHHH-----hhcCceeEEEEECC
Confidence            7554        2456678999999999999998 45999999999999984 45444444     46678899999999


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                      +..+.+++.+  +.+.+=.+... ..+..+++|.+-|.++.|+|..+++++|++|-..++||.. |..+..-     ..+
T Consensus       156 ~S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-----~~~  226 (737)
T KOG1524|consen  156 NSNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-----AAE  226 (737)
T ss_pred             CCCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-----Chh
Confidence            7777776654  66777666655 5566788999999999999999999999999999999965 4554443     234


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      ..+|++++|+|+ +.++.++.+ .++            +.   ....+.|..++|++||..++.|...|.+.+=
T Consensus       227 ey~ITSva~npd-~~~~v~S~n-t~R------------~~---~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  227 EYAITSVAFNPE-KDYLLWSYN-TAR------------FS---SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ccceeeeeeccc-cceeeeeee-eee------------ec---CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            456999999999 666666543 333            21   4567889999999999999999999988663

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=8.2e-23  Score=159.45  Aligned_cols=253  Identities=17%  Similarity=0.273  Sum_probs=190.0

Q ss_pred             ccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCC
Q 016522           66 HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        66 h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~  140 (388)
                      |...-..++|+-+    ..++|.|+.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6777888888764    3489999999999999999999999999999999999999965 7899999999999999998


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe----------------------e
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF----------------------G  198 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----------------------~  198 (388)
                      ..    ...+..-..+|.+.|.++.|+++|+ ++++++.|.++++|++...+....+                      +
T Consensus       168 ~~----Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  168 DV----CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             Ce----EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence            54    1112223468999999999999985 8999999999999999843211110                      0


Q ss_pred             c-ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-------------eEEEecccCCeeE--EEEccCC
Q 016522          199 G-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-------------VRTFHGHEGDVNT--VKFFPDG  262 (388)
Q Consensus       199 ~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~i~~--~~~~~~~  262 (388)
                      . .....|...|-|+.|.   ++++++-+-++.|..|......+.             +..+.-....|.-  .+|+|-+
T Consensus       243 ~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~  319 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ  319 (385)
T ss_pred             cccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence            0 0113456666677664   378888888999999987322111             2222222333443  4556778


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +.||.|.+.|.|.+||++...+....... .......|...+|+.||.+|+..++|+.|.-||..
T Consensus       320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  320 KMLALGNQSGKVYVWDLDNNEPPKCTTLT-HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHhhccCCCcEEEEECCCCCCccCceEE-eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            89999999999999999987764222211 12334569999999999999999999999999853

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3e-21  Score=149.49  Aligned_cols=213  Identities=20%  Similarity=0.282  Sum_probs=160.6

Q ss_pred             EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc----eEEEeecccccCCccCeEEEEee-CCCCcEEEEeeC
Q 016522          153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----RTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC  227 (388)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~  227 (388)
                      .-.+|.+-|.++.|.+.| +.+++|+.|++|+|||.++..    +....     ..|.+.|..+.|. |.-|+.+++++.
T Consensus         8 i~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-----rah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-----RAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             cccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-----EecCCcEEEEEecCccccceEEEEec
Confidence            346788999999999997 679999999999999976543    33444     6899999999995 456889999999


Q ss_pred             CCceEEEECCCC--------CcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeecc-----
Q 016522          228 DSTARLWDTRVA--------SRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----  292 (388)
Q Consensus       228 dg~i~i~d~~~~--------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  292 (388)
                      |+++.||.-...        .....++....+.|+.+.|.|  -|-.+++++.||.++||+......+......+     
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            999999975311        023345566778899999999  57789999999999999987654443332211     


Q ss_pred             ---CCCCCCCeEEEEecCC---CCEEEEEecC-----CcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCC----CC
Q 016522          293 ---GENEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GS  356 (388)
Q Consensus       293 ---~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~  356 (388)
                         ...+..+..|+.|+|.   ..+||+|+.+     +.++||....+. .......+ .+|..+|++++|.|+    -.
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCcee
Confidence               1124456789999975   3488888766     478999876543 22222222 689999999999995    35


Q ss_pred             eEEEccCCCeEEEeccc
Q 016522          357 ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~  373 (388)
                      +||+++.|| |+||...
T Consensus       241 ~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVK  256 (361)
T ss_pred             eEEEeecCc-EEEEEEe
Confidence            899999999 9999876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=7e-20  Score=156.63  Aligned_cols=281  Identities=12%  Similarity=0.111  Sum_probs=178.0

Q ss_pred             EEEEeCCCcEEEEECCC-CC--eeeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           82 IVSASQDGRLIVWNALT-SQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      +++...++.|.+||+.+ ++  .+..+.. .+....++++|++++|++++ .++.|.+|+++...    .+....... .
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g----~l~~~~~~~-~   78 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG----ALTFAAESP-L   78 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC----ceEEeeeec-C
Confidence            34456789999999964 33  3344433 35577899999999987764 47889999997311    111222221 2


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEE
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWD  235 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d  235 (388)
                      .+....++++|+++.++++...++.|.+|++.+.. ...... .  ..+.....+++++| +++++ ++...++.|.+||
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~--~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I--IEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e--ccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEE
Confidence            23456899999985555555568999999997432 111110 0  12234467788999 55555 5566679999999


Q ss_pred             CCCCCcceE----EEe-cccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCC--Cce--eeEeeeccC-CCCCCCeEEEE
Q 016522          236 TRVASRAVR----TFH-GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRT--GHQ--LQVYYQQHG-ENEIPHVTSIA  304 (388)
Q Consensus       236 ~~~~~~~~~----~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~-~~~~~~i~~~~  304 (388)
                      +........    ... ........+.|+|++++++++.. ++.|.+|++..  ++.  ...+..... .........+.
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            976422210    011 12334678999999999988876 89999999974  222  222211100 01112344688


Q ss_pred             ecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccc
Q 016522          305 FSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHY  373 (388)
Q Consensus       305 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~  373 (388)
                      ++|++++++++.. ++.|.+|++........+...... ......++++|||++|++++. ++.|.+|...
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999999999864 679999998643211111000011 134568899999999998775 8999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=7.4e-21  Score=146.24  Aligned_cols=298  Identities=15%  Similarity=0.205  Sum_probs=204.9

Q ss_pred             eeeeccccccCCeeEEEeCC--C-CCeEEEEeC----CCcEEEEEC--CCCCeeeEe-eeCCccEEEEEECCCC-----C
Q 016522           58 VCCRTLQGHAGKVYSLDWTS--E-RNRIVSASQ----DGRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTG-----Q  122 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~--~-~~~l~t~~~----dg~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~  122 (388)
                      +.+..+..+ -.+.++.|+.  + +.+||.|+-    .+.|.|-.+  ++++.+..- ..|.-+++.+.|.|+.     +
T Consensus        36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence            444455543 3688999984  2 347888873    456666544  344443332 2466789999999976     3


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCC--CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEe
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVF  197 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~  197 (388)
                      +||+++  ..+++|.+.........  ......-..+..++++..|+.-..+++.+++-|-+..|||++++..   ...+
T Consensus       115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            455543  47999999853211110  0011122346679999999998889999999999999999999733   2223


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEcc-CCCEEEEeeCC-Cc
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP-DGNRFGTGSDD-GT  273 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d-g~  273 (388)
                           -.|..+|..++|.....+.|++.+.||.+++||+|........+...  ..+...++|++ |.+++|+-..| ..
T Consensus       193 -----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  193 -----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             -----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence                 58999999999998778899999999999999999775444444432  45788999998 66788876655 46


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeecc-CCCCCcCCCeeEEEE
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGL  351 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~  351 (388)
                      |.|.|++.........    .+|...|+.++|.|... .|++++.|..+.+||+...-...... .+.-.-.+.|+.+.|
T Consensus       268 V~iLDiR~P~tpva~L----~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W  343 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARL----RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW  343 (364)
T ss_pred             EEEEEecCCCcceehh----hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee
Confidence            9999998754333222    34556799999999755 99999999999999987532211000 011235678999999


Q ss_pred             CC-CCCeEEEccCCCeEE
Q 016522          352 SA-DGSALCTGSWDTNLK  368 (388)
Q Consensus       352 ~~-~~~~l~s~~~dg~v~  368 (388)
                      ++ .+..++.+. ++.+.
T Consensus       344 s~~~~Dwiai~~-~kkle  360 (364)
T KOG0290|consen  344 SSSQPDWIAICF-GKKLE  360 (364)
T ss_pred             cccCCCEEEEEe-cCeee
Confidence            96 455666554 44443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.89  E-value=2.4e-19  Score=142.51  Aligned_cols=240  Identities=15%  Similarity=0.223  Sum_probs=179.9

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC--CcEEEEeCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDK  144 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~  144 (388)
                      ...+..+.|+.+...|..|+.|| .++|+.+..............|.-+-|+.  .++|..+.+  +.++++++....  
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~--   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT--   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc--
Confidence            34577788999999999999987 67888766555433344444566666654  455554443  458888887633  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                           ....+ ....+|.++.++.   +.|+++-.+. |+|||+++.+.+.++...  ..+...+.++.+++ .+.+++-
T Consensus        80 -----~ICe~-~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~-~n~ylAy  146 (391)
T KOG2110|consen   80 -----TICEI-FFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNN-ANCYLAY  146 (391)
T ss_pred             -----eEEEE-ecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCC-CCceEEe
Confidence                 12111 2346788888876   3466655544 999999999988887421  24556677777766 4556654


Q ss_pred             --eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          225 --GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       225 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                        ....|.|.+||..+. +++..+..|.+++-+++|+++|.+||+++..|+ ||+|.+.+|+.+..+.....   ...|.
T Consensus       147 p~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~Iy  222 (391)
T KOG2110|consen  147 PGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIY  222 (391)
T ss_pred             cCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEE
Confidence              234689999999988 889999999999999999999999999999997 89999999999998876433   34589


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      +++|+|++.+|++.++.++|++|.+..
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEecc
Confidence            999999999999999999999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=2.6e-21  Score=154.69  Aligned_cols=217  Identities=18%  Similarity=0.245  Sum_probs=175.6

Q ss_pred             EeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          104 AIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       104 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      .+.+|.++|..++|+| +...||+|+.|.+|.||.+..+............+.+|...|--++|+|.-.+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4567999999999999 567899999999999999987664444455678899999999999999998899999999999


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccC
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD  261 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~  261 (388)
                      |.+||+.+++.+..+      .|...|.+++|+. ++.+|++.+.|..|++||.+++ ..+..-.+|.+ .-..+.|-.+
T Consensus       156 v~iWnv~tgeali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEEEeccCCceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEecc
Confidence            999999999988886      4999999999998 9999999999999999999988 77777777876 3556778778


Q ss_pred             CCEEEEee---CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-EecCCcEEEEEcccceE
Q 016522          262 GNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       262 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~  331 (388)
                      +.++-+|-   .+.++-+||..+......+...   .....|.---|+++.++++. |-.|+.|+-|.+....+
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEe---ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            88555543   4678999998765554333221   22234666668888886654 55699999999877654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=5.5e-23  Score=167.51  Aligned_cols=278  Identities=17%  Similarity=0.231  Sum_probs=218.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      .-.-..+.++.+|+.|+.|+..|.|..+|..+++....+..... |.++.|-.+.+++|++- ...++|||-...     
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt-----  201 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT-----  201 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcchHHHHhhh-hceEEEecCCCc-----
Confidence            33567789999999999999999999999999999888876654 99999998888888774 567999997652     


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                         ....++.| ..|..+.|.|.. .+|++++..|.++.-|+.+|+.+..+     ....+.+..++-+| -+..+-+|.
T Consensus       202 ---ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~qNP-~NaVih~Gh  270 (545)
T KOG1272|consen  202 ---ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQNP-YNAVIHLGH  270 (545)
T ss_pred             ---EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHH-----HccCCccchhhcCC-ccceEEEcC
Confidence               23334433 568889999974 77889999999999999999999888     66778888899998 777899999


Q ss_pred             CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .+|+|.+|..... .++..+..|.++|.+|++.++|+|+++.+.|..++|||++....+.++....      +...+++|
T Consensus       271 snGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~S  343 (545)
T KOG1272|consen  271 SNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLS  343 (545)
T ss_pred             CCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC------Cccccccc
Confidence            9999999999887 7777788899999999999999999999999999999999988777765532      26778887


Q ss_pred             CCCCEEEEEecCCcEEEEEc-ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          307 ISGRLLFAGYSNGDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ..| +||.+ ....|.||.- ..+..-.....+.....++|..+.|.|-...|-.|...|.-.|-.
T Consensus       344 qkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV  407 (545)
T KOG1272|consen  344 QKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV  407 (545)
T ss_pred             ccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence            554 45544 4457999952 221111111112234456899999999777777777666555543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.5e-20  Score=163.58  Aligned_cols=298  Identities=16%  Similarity=0.193  Sum_probs=213.9

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      .|.-.++|.+++|+++++|+|..||.|.+|.--.    ......+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999996322    233456778889999999999999999999999999999998


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc------ccCCccCeEEEEe
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSI  214 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~~~~i~~~~~  214 (388)
                      ++        .+.+..-.++|..+.++|++ .+.+....|+.|.+....+......+....      .....+-.+.+++
T Consensus       283 ~~--------kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  283 GK--------KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             CC--------cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            65        33445567899999999997 567777889999998876654444432211      1123455677888


Q ss_pred             eCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----------cccCCeeEEEEccCCCEEEEeeC--------CC--c
Q 016522          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----------GHEGDVNTVKFFPDGNRFGTGSD--------DG--T  273 (388)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~--------dg--~  273 (388)
                      +| ..+.++-.+..|.|.+||+-+. ..+..+.           .+...+++++.+-.|.++++.-.        ||  .
T Consensus       354 dp-r~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~  431 (792)
T KOG1963|consen  354 DP-RTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS  431 (792)
T ss_pred             cC-CCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence            88 6677788888999999999876 3333332           12234677788878999988642        33  5


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEec-CCCC-EEEEEecCCcEEEEEccc------ceEEeeccCCCCCcCCC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-ISGR-LLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSHEGR  345 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~  345 (388)
                      +++|-......-..+...-..+|...+...++. +... ..++++.||.++||-+..      .............|..+
T Consensus       432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~  511 (792)
T KOG1963|consen  432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP  511 (792)
T ss_pred             EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence            788877655544444333223333344444443 3333 788999999999998733      22222222222458899


Q ss_pred             eeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          346 ITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       346 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +++++|+.||. +++.+.|+.|.+|++..
T Consensus       512 i~a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  512 ITALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence            99999999996 56667899999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.7e-20  Score=137.25  Aligned_cols=277  Identities=14%  Similarity=0.187  Sum_probs=198.2

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCC----------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      .|.+-+++|.+++|+.|+.+|.|.+..+.+          ...+...+.|.+++..++|.  ..+|++|+ ||.|+=|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            467778999999999999999999998743          22345558899999999998  45666665 599999998


Q ss_pred             CCCCCCCCCCce-eEEecc-----cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          139 NSPTDKDGNLPV-SRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       139 ~~~~~~~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +...+.....+. ......     .-..|++|-..|..+. ++.++.|+.++-||+++|+....+     .+|.+.+.++
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~-----rGHtDYvH~v  162 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY-----RGHTDYVHSV  162 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE-----cCCcceeeee
Confidence            764321111000 011111     2246888999988644 666669999999999999999999     8999999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---------cc-CCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      .--. ....+++|++||++++||.++. +.+..+..         |. ..|.+++-  +..++++|+. ..+.+|.++..
T Consensus       163 v~R~-~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss  237 (325)
T KOG0649|consen  163 VGRN-ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS  237 (325)
T ss_pred             eecc-cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence            8855 4556889999999999999988 55555432         22 23556665  4668887764 57999999999


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC-CCeEEEc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTG  361 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~  361 (388)
                      ++...+....      ++..+.|..  +.+++++....|.-|.+. +..-...    .......++..|+.. -++|-.+
T Consensus       238 e~t~vfpipa------~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~i----p~~s~~c~s~s~~~~p~k~~s~a  304 (325)
T KOG0649|consen  238 ESTCVFPIPA------RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANI----PVESTACYSASWQTSPIKFISIA  304 (325)
T ss_pred             CceEEEeccc------ceeEeeeec--ceEEEeccccceeeeeec-cEEEEec----cCCccceeeecccCCceEEEEec
Confidence            9888886533      367777754  467777778889999863 4444444    233334556666543 3566677


Q ss_pred             cCCCeEEEecc
Q 016522          362 SWDTNLKVSLH  372 (388)
Q Consensus       362 ~~dg~v~iw~~  372 (388)
                      +....+.|+..
T Consensus       305 g~s~~~~i~~~  315 (325)
T KOG0649|consen  305 GFSNKLHILKD  315 (325)
T ss_pred             ccceeeeeeec
Confidence            88888888753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.6e-20  Score=138.98  Aligned_cols=247  Identities=16%  Similarity=0.185  Sum_probs=180.2

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      |.+-+|+|.+++|++|..+|.|.+..+.+....   ..........++|.++|..++|..   .+|++|+. |.|+-|..
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeee
Confidence            556689999999999999999999998763211   111223445589999999999994   45666654 99999876


Q ss_pred             CCCce------EEEeecccc--cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          189 TTGLR------TSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       189 ~~~~~------~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      +....      ......++.  ...-..|+++...|..+.+|.+| -|+.++-||+.++ +..+.+++|...|.++.--.
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence            54322      111111111  12235688999999666666655 6999999999998 89999999999999999855


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC-----CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ....+++|++||++++||+++++.+..+.....++     ....|-+++.  +..+|++|+ ...+.+|+++..++...+
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF  243 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence            55679999999999999999999998876544332     2234555554  455888875 447999999998888776


Q ss_pred             cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                           .-..+|..+.|..|  .+++++....|.-|.+..
T Consensus       244 -----pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  244 -----PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -----ecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence                 34567888888654  677787777777776543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.88  E-value=4.4e-20  Score=143.93  Aligned_cols=211  Identities=17%  Similarity=0.259  Sum_probs=173.3

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      -..+|+|.+|++|+..+|.+.....|.||.....   +..+++..|+..|+.++|+|..+.|++++.|..-+||....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence            3468999999999999999999999999987654   467888999999999999999999999999999999998532 


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                         +.+.....+..++...+++.|+|.+ +.|++|+....|.||-++....-. ....+...+.+.|++++|+| ++-++
T Consensus        88 ---~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-VsKhikkPirStv~sldWhp-nnVLl  161 (361)
T KOG1523|consen   88 ---GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-VSKHIKKPIRSTVTSLDWHP-NNVLL  161 (361)
T ss_pred             ---CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-hhhhhCCccccceeeeeccC-Cccee
Confidence               3455667778899999999999986 679999999999999887654322 22233367888999999999 88999


Q ss_pred             EEeeCCCceEEEECCC-----C------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          223 VSGSCDSTARLWDTRV-----A------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~-----~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ++|+.|+..++|..--     .            ...+..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999996421     1            01223333456789999999999999999999999999977654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-21  Score=152.27  Aligned_cols=274  Identities=14%  Similarity=0.202  Sum_probs=194.6

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCC--CCCeEEEEeCCCcEEEEECCCCCeeeEeee--CC-ccEEEEEE
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PC-AWVMTCAF  117 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~-~~v~~~~~  117 (388)
                      +-.+..+..|++.+.+.+..|++|...++.+.|..  ....+.+++.||+|++||++.......+..  +. .+..+++.
T Consensus        46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   46 SLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL  125 (376)
T ss_pred             EecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence            34567788899999999999999999999999987  456899999999999999988766555433  32 45677777


Q ss_pred             CCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522          118 SPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       118 ~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      ...++.+++|..    +-.+.+||++..+.     .+......|.+.|+++.|+|..+++|++|+.||.|.+||++....
T Consensus       126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             cCcCCeEEeccccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            778888888854    66899999998542     144456789999999999999999999999999999999976532


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------------cCCeeEEEEcc-
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFP-  260 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~-  260 (388)
                      -..+...  ..+...|.++.|....-+.+.+-+..++..+|++..+. ....+...            ...+... .+| 
T Consensus       201 eDaL~~v--iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~  276 (376)
T KOG1188|consen  201 EDALLHV--INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINE-HSPG  276 (376)
T ss_pred             hhhHHHh--hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeec-ccCC
Confidence            1111100  35778899999997555678888889999999998773 32222211            0011111 123 


Q ss_pred             CCCEEEEeeC-CCcEEEEECC---CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          261 DGNRFGTGSD-DGTCRLFDIR---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       261 ~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +...++.++. -|...++-+.   ++......... ...+..-|+++.|...+.++++|+.||.+.+|..
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l-~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL-QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccc-cCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            4445555444 5555555443   22222211111 1223445888899888999999999999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-19  Score=157.69  Aligned_cols=317  Identities=15%  Similarity=0.172  Sum_probs=224.2

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCC---CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC---C
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP---T  120 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~  120 (388)
                      ..+..|...+..+++.|.+|..+++.+.+.|..   .++++++.||.|++||...++.+.++..+.. +..+.+.|   +
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~  115 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQAD  115 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhC
Confidence            445667888889999999999999999998854   4778999999999999999999888876544 44444422   1


Q ss_pred             CCEEE-EeeCCCcE------------EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          121 GQSVA-CGGLDSVC------------SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       121 ~~~l~-~~~~dg~i------------~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ...++ .+..|..+            +-+.+.+-.     .........|.. -.++.+++.| . +.....+..+.+|+
T Consensus       116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-----~~~~d~~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~  187 (792)
T KOG1963|consen  116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-----SAKGDFLKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYF  187 (792)
T ss_pred             ccceeEeecccceeeeecccccccceeeeEeeecc-----ccchhhhhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEE
Confidence            11222 22222211            111111100     001111222222 3456777765 3 44455566789999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---CCcceEEEecccCCeeEEEEccCCCE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                      ..++. ...........|...+++.+++| +++++++|..||.|.+|.--.   .......+.-|...|++++|+++|.+
T Consensus       188 v~~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~  265 (792)
T KOG1963|consen  188 VPKHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY  265 (792)
T ss_pred             ecccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence            88766 33333334456777799999999 999999999999999996432   22455677789999999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC---
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS---  341 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  341 (388)
                      |++|+..|.+.+|.+.+++ . .+.+    .-.++|..+.++||+.+.+....|+.|.+....+.+...++..+...   
T Consensus       266 LlSGG~E~VLv~Wq~~T~~-k-qfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGK-K-QFLP----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             EeecccceEEEEEeecCCC-c-cccc----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence            9999999999999999988 3 3322    23346999999999999999999999999988766655554332222   


Q ss_pred             ----cCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522          342 ----HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP  380 (388)
Q Consensus       342 ----~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~  380 (388)
                          ..+-.+.++++|.-+.++-.+..|.|.+|+.+.+..+..
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~  382 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK  382 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence                345578899999777889999999999999876554433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=3.7e-20  Score=148.66  Aligned_cols=261  Identities=15%  Similarity=0.232  Sum_probs=193.1

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--------C--------CCeeeEeeeCCccEEEEEECC
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--------T--------SQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      .......|..|..+|+++.|+|+|+.||+|+.+|.|.+|...        +        ......+.+|...|..++|+|
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            345677899999999999999999999999999999999765        2        122345567888999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee-
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG-  198 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-  198 (388)
                      ++.++++++.|..+++||+..+.       ....+..|...+..++|.|-+ +++++-+.|...+.+.+.......... 
T Consensus       134 d~~~l~s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~  205 (434)
T KOG1009|consen  134 DSNFLVSGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL  205 (434)
T ss_pred             CCceeeeeeccceEEEEEeccce-------eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee
Confidence            99999999999999999999876       788889999999999999986 778888888877777766544333221 


Q ss_pred             ----cccccC-------------CccCeEEEEeeCCCCcEEEEeeC----C-----CceEEEECCCCCcceEEEecccCC
Q 016522          199 ----GEFQSG-------------HTADVLSVSISGSNSRMFVSGSC----D-----STARLWDTRVASRAVRTFHGHEGD  252 (388)
Q Consensus       199 ----~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~  252 (388)
                          ......             ...-...++|+| ++.++++...    +     ...++|+-....++...+.....+
T Consensus       206 ~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~  284 (434)
T KOG1009|consen  206 DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKP  284 (434)
T ss_pred             eEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcc
Confidence                000011             112234567887 7778776431    1     234566655555667777666666


Q ss_pred             eeEEEEccC------------------CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          253 VNTVKFFPD------------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       253 i~~~~~~~~------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      ...+.|+|-                  +-.++.++ .+.|.+||..+..++......    |...++.++|+++|.+++.
T Consensus       285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~ni----hy~~iTDiaws~dg~~l~v  359 (434)
T KOG1009|consen  285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI----HYSAITDIAWSDDGSVLLV  359 (434)
T ss_pred             eEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeee----eeeeecceeecCCCcEEEE
Confidence            666666651                  12344444 458999999888777766443    3346999999999999999


Q ss_pred             EecCCcEEEEEcccce
Q 016522          315 GYSNGDCYVWDTLLAK  330 (388)
Q Consensus       315 ~~~dg~i~i~d~~~~~  330 (388)
                      .+.||...+..+...+
T Consensus       360 SS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  360 SSTDGFCSLVTFEPWE  375 (434)
T ss_pred             eccCCceEEEEEcchh
Confidence            9999987776665544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=3.5e-18  Score=146.17  Aligned_cols=272  Identities=10%  Similarity=0.108  Sum_probs=173.3

Q ss_pred             CCCcccCCC---CceeeeccccccCCeeEEEeCCCCCeEEEEe-CCCcEEEEECCC-CCe--eeEeeeCCccEEEEEECC
Q 016522           47 RAPVSFGPT---DLVCCRTLQGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALT-SQK--THAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        47 ~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~  119 (388)
                      ..+..|+..   .+..+.++. +.+....++++|++++|++++ .++.|.+|++.. +..  ..... .......++|+|
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~   89 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH   89 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence            444455442   334555555 346688899999999887664 578999999863 332  22222 223567899999


Q ss_pred             CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe-
Q 016522          120 TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-  197 (388)
Q Consensus       120 ~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-  197 (388)
                      +++++++++. ++.|.+|+++.....   ........ +......++++|++..++++...++.|.+||+.+...+... 
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            9999888765 789999999742211   01122222 22345678899998666677778899999999864322110 


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCC---cceEEEeccc------CCeeEEEEccCCCEEEE
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVAS---RAVRTFHGHE------GDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~---~~~~~~~~~~------~~i~~~~~~~~~~~l~~  267 (388)
                      ..............+.|+| ++++++++.. ++.|.+||++...   ..+..+..+.      .....+.++|+++++++
T Consensus       166 ~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        166 PAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             CCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence            0000012234467889998 7777766665 8999999997421   1223332211      12336889999999998


Q ss_pred             eeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcc
Q 016522          268 GSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL  327 (388)
Q Consensus       268 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  327 (388)
                      +.. ++.|.+|++........+......  ......+.++|+|++|+++.. ++.|.+|++.
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            854 789999998654322222111111  113567899999999998776 8899999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.3e-19  Score=145.07  Aligned_cols=201  Identities=21%  Similarity=0.264  Sum_probs=154.3

Q ss_pred             EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc
Q 016522          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  241 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  241 (388)
                      .+++|+.+| ..+++++.||++++|+..+...+...     ..|...|.++.|+| ++++|++-+.| ..++|+.+++ .
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g-~  218 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG-A  218 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC-c
Confidence            678999986 68999999999999997776666665     68999999999999 99999999999 9999999988 5


Q ss_pred             ceEEEec--ccCCeeEEEEccCC---CE--EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          242 AVRTFHG--HEGDVNTVKFFPDG---NR--FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       242 ~~~~~~~--~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      .+.....  .......+.|+.++   .+  ++....-+.|+.|++...+.-..............|++++.+++|++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            5544442  23345677887766   22  23333455677777654333211111111112235999999999999999


Q ss_pred             EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |+.||.|.|++..+.+.+...+   +.|...|+.+.|+||.+++++.+.|....|.....
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk---~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK---EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh---hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999998888777665   78999999999999999999999999988876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.8e-18  Score=137.30  Aligned_cols=293  Identities=17%  Similarity=0.219  Sum_probs=195.7

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      -.+..++|++.-..+|++..|-.|++||-.. .....++ .....|++++|-|.+ +.|++|+.. -|.+|..+......
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            4688899999777889999999999999766 4444443 345679999999965 556666654 58899987543211


Q ss_pred             CC-------CceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          146 GN-------LPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       146 ~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ..       ........+| .+|++|.|.+||. .++++ -.|..|.|||..++..+...     ....+.+.-+.|+| 
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSP-  248 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSP-  248 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcC-
Confidence            11       0111223344 7899999999985 45555 45778999999999877765     45567788999999 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee-------
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-------  290 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------  290 (388)
                      ++.+|++++.|+..++|.........+...+ .+.|...+|+|+|..|+.... |.-++|.+.-......+..       
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee
Confidence            8889999999999999976655344444443 458999999999987665443 3445555432111111110       


Q ss_pred             ------------ccCCCCCCCeEEEEecCCCCEEEEEecCC--------cEEEEEcccceEEeecc-CCCCCcCCCeeEE
Q 016522          291 ------------QHGENEIPHVTSIAFSISGRLLFAGYSNG--------DCYVWDTLLAKVVLNLG-SLQNSHEGRITCL  349 (388)
Q Consensus       291 ------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~  349 (388)
                                  .......+.+.+++|+|.|.+||+....+        .|.+||....-.+.-.. .+  ........+
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~--i~ge~P~~I  404 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM--IGGEYPAYI  404 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc--ccCCCCceE
Confidence                        00011234578999999999999976544        36678866544332221 11  111225566


Q ss_pred             EECC---CCCeEEEccCCCeEEEeccce
Q 016522          350 GLSA---DGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       350 ~~~~---~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +|+|   ++.+|..+=..|.+.-|...+
T Consensus       405 sF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  405 SFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             EeeecccCCcEEEEEeccCceEeeeeEE
Confidence            7766   677888888888888776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2.7e-19  Score=157.59  Aligned_cols=236  Identities=15%  Similarity=0.178  Sum_probs=164.1

Q ss_pred             CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (388)
                      +..|.+||..... ...+..+...+...+|+|+|+.|+.++.+   ..|++||+.++..     .......+|   ....
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~~l~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----KVVASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----EEEecCCCc---cCce
Confidence            4689999976544 55566677789999999999999987654   3699999986431     122223333   3468


Q ss_pred             EEEeCCCceEEEeeCCCeEEEE--ecCCCceEEEeecccccCCccCeEEEEeeCCCCcE-EEEeeCCCceEEEECCCCCc
Q 016522          165 QYVPDEDTHLITSSGDQTCVLW--DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM-FVSGSCDSTARLWDTRVASR  241 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~  241 (388)
                      +|+|+|..++++.+.+|.+.||  |+.++.... +     ..+...+....|+| ++.. ++++..+|...+|+++....
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----t~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----TSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-e-----ccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            9999985544555678865554  666655433 3     34556678899999 5554 44555678889998765433


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcE
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (388)
                      ....+ .+..  ....|+|+|++|+..+.++ +.+||+.++........ . .     ...+.|+|+|++|+.++.++..
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~-~-----~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F-L-----DESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C-C-----CCCceECCCCCEEEEEEcCCCc
Confidence            33333 3333  4578999999998887765 66699988765432211 1 1     2457799999999999999988


Q ss_pred             EEEEcc--cceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          322 YVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       322 ~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      .+|++.  +++....+    ..|.+.+...+|+|-
T Consensus       396 ~~l~~~~~~G~~~~~l----~~~~g~~~~p~wsp~  426 (429)
T PRK01742        396 KVLQLVSADGRFKARL----PGSDGQVKFPAWSPY  426 (429)
T ss_pred             eEEEEEECCCCceEEc----cCCCCCCCCcccCCC
Confidence            888753  56777777    677888899999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=6.3e-20  Score=155.67  Aligned_cols=236  Identities=16%  Similarity=0.242  Sum_probs=181.6

Q ss_pred             EeCCCcEEEEECCCCCeee-E-e--eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           85 ASQDGRLIVWNALTSQKTH-A-I--KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        85 ~~~dg~v~iwd~~~~~~~~-~-~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      ++..|.|-||++.....+- . +  -.....|+.+.|.| |...|++++.||.|++|.+..+............+..|..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            4567899999987643221 1 1  12345699999999 7789999999999999999987766667778888999999


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      .|+++.|+|--...|++++.|-+|++||+.+.+....+     .+|.+.|..++|+| +++.+++.+.||+|++|..+..
T Consensus       679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC
Confidence            99999999987788999999999999999999988888     89999999999999 9999999999999999999988


Q ss_pred             CcceEEEecccC-CeeEEEEccCCCEEEEeeCCC----cEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCCCC-E
Q 016522          240 SRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGR-L  311 (388)
Q Consensus       240 ~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  311 (388)
                      ..++..-.+..+ .--.|.|.-+|+++++.+.|.    .|.+||..+-.  .+.+......+    .+.--.+.+|.. +
T Consensus       753 e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~YD~Ds~~l  828 (1012)
T KOG1445|consen  753 EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPHYDYDSNVL  828 (1012)
T ss_pred             CCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----ccccccccCCCceE
Confidence            777765554322 234577888999998887664    58899876533  22222111111    122223556655 6


Q ss_pred             EEEEecCCcEEEEEcccce
Q 016522          312 LFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~  330 (388)
                      +++|-.|..|++|.+-...
T Consensus       829 fltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  829 FLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             EEecCCCceEEEEEecCCC
Confidence            6777789999999875443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=144.97  Aligned_cols=250  Identities=20%  Similarity=0.267  Sum_probs=171.2

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe----eeEeeeCCccEEEEEE-----CCCCCEEEEeeCCCcEEEEeCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAIKLPCAWVMTCAF-----SPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      .+....++-.|++|+-.-. ..+.+|+...+..    +..........+|-+|     .|.+--++.|-..|.+.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            4555556667777766543 3688888764322    2111122233445455     3466678888889999998876


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      ....   .........-.+..|+|+.|.|.++..++.+-.+|.+++||..-.           .+...  .+....+ ++
T Consensus       204 ~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~--p~~~~~k-~~  266 (636)
T KOG2394|consen  204 NFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATA--PSYQALK-DG  266 (636)
T ss_pred             hhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCC--CcccccC-CC
Confidence            5210   000011111234789999999998899999999999999997211           01101  1111112 34


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      ..+....       |.-.....++..+.--.+.|+..+|+|||++||+.+.||.++|||..+.+.+.......+     .
T Consensus       267 ~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----G  334 (636)
T KOG2394|consen  267 DQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----G  334 (636)
T ss_pred             CeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----c
Confidence            4443322       221122245555555567899999999999999999999999999998877766644443     4


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      ..|++|+|||+||++|++|.-|.||.+..++.+..-    ++|.+.|+.++|+
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFD  383 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeec
Confidence            899999999999999999999999999999999888    8999999999998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=1.7e-18  Score=135.12  Aligned_cols=247  Identities=15%  Similarity=0.186  Sum_probs=184.1

Q ss_pred             EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (388)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  183 (388)
                      .+..-..+|+|.+|++|+..++++..+..|.||.....+    .+....++..|...|+.++|.|.. +.|++++.|..-
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna   79 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA   79 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence            344455789999999999999999999999999988643    355778899999999999999986 569999999999


Q ss_pred             EEEec-CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEc
Q 016522          184 VLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       184 ~i~d~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~  259 (388)
                      ++|.. ..++-..++..   ..++...+++.|+| +++.|++|+....|.+|-+.....   ....-..+.+.|++++|+
T Consensus        80 yVw~~~~~~~WkptlvL---lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh  155 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVL---LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH  155 (361)
T ss_pred             cccccCCCCeeccceeE---EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence            99998 44433222211   57889999999999 889999999999999998765421   122334567889999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCc--------------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGH--------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      |++-+|++|+.|+..++|..--..              +...+.... ....+.+..+.|+|+|..|+-.+.|+.+.+-|
T Consensus       156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            999999999999999999752110              000000000 12345799999999999999999999999999


Q ss_pred             cccce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          326 TLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       326 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      ..... .+..+    ....-+..++.|-.+.. ++.++.|.
T Consensus       235 a~~p~~~v~~~----~~~~lP~ls~~~ise~~-vv~ag~~c  270 (361)
T KOG1523|consen  235 AAGPSERVQSV----ATAQLPLLSVSWISENS-VVAAGYDC  270 (361)
T ss_pred             cCCCchhccch----hhccCCceeeEeecCCc-eeecCCCC
Confidence            76654 33333    22236777777765443 45555553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1e-18  Score=136.95  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=198.8

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCce
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      -.+|+|+|+++|+++.- .+.|=|.++-+..+.+.. -..|.-+.|..+..+++++ ..++.|.+|++..+.       .
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------W   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-------e
Confidence            35799999999999876 777778777665544433 2457888999988877765 567899999998855       5


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---  227 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---  227 (388)
                      ...+......+..++|+|+|..++.+...+-.|.+|.+.+.+....-      -....+..++|+| ++++.+..+.   
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~------~pK~~~kg~~f~~-dg~f~ai~sRrDC  156 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP------HPKTNVKGYAFHP-DGQFCAILSRRDC  156 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec------ccccCceeEEECC-CCceeeeeecccH
Confidence            56667777889999999999888889999999999999887665542      2233456777777 6666555432   


Q ss_pred             ---------------------------------CCceEEEECCCCCcceEEEecc-cCCeeEEEEccCCCEEEEeeCCCc
Q 016522          228 ---------------------------------DSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGT  273 (388)
Q Consensus       228 ---------------------------------dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~  273 (388)
                                                       +..+.+||.--.   ...+.-| .-.+..++|+|.+++|++|+.|+.
T Consensus       157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~  233 (447)
T KOG4497|consen  157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM  233 (447)
T ss_pred             HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeeeeeccceeEEEeccccceEEeeccchh
Confidence                                             122445543211   1111112 246888999999999999999999


Q ss_pred             EEEEECCCCceeeEeee-------------------------------------------------------------cc
Q 016522          274 CRLFDIRTGHQLQVYYQ-------------------------------------------------------------QH  292 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~-------------------------------------------------------------~~  292 (388)
                      +++.+--+.+....+..                                                             ..
T Consensus       234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD  313 (447)
T KOG4497|consen  234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD  313 (447)
T ss_pred             hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence            98866432221111100                                                             00


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEec--CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      .++....+.-++|++|..++++-.+  -+.+.+||++..+....+     ....+|....|+|....|+.+.....+++|
T Consensus       314 ~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  314 FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            0122334677999999999988754  357999999888776665     345689999999999899988888899999


Q ss_pred             ccce
Q 016522          371 LHYY  374 (388)
Q Consensus       371 ~~~~  374 (388)
                      .+..
T Consensus       389 ~psg  392 (447)
T KOG4497|consen  389 APSG  392 (447)
T ss_pred             cCCC
Confidence            9765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=150.14  Aligned_cols=208  Identities=21%  Similarity=0.361  Sum_probs=167.3

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      ..|+.++.||.+.+-+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-...        +..++.....
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCc
Confidence            4788889999999988 567778888999999999999999999999999999999996651        3344556678


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      +|.|++|.|+..+.+++.+.  .+.|=-+.....+..+     ..|.+-|.++.|++ ..+++++|++|-..++||-.  
T Consensus       147 ~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~--  216 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRW-----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ--  216 (737)
T ss_pred             eeEEEEECCCCCceEEecCC--eEEEeecccccceeEE-----eccCcEEEEeecCc-cccceeecCCceeEEeeccc--
Confidence            99999999998777766554  4555555555555555     68999999999999 88999999999999999976  


Q ss_pred             CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      ...+..-..|+.+|++++|+|+ ..++.++.. ++++            .    ....+.|..++||+||..+++|+..|
T Consensus       217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~------------~----~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF------------S----SPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             CcccccCChhccceeeeeeccc-cceeeeeee-eeee------------c----CCCccceEEEEEcCCCceeeccccCc
Confidence            3677777889999999999999 666666542 3441            1    11223589999999999999999999


Q ss_pred             cEEEE
Q 016522          320 DCYVW  324 (388)
Q Consensus       320 ~i~i~  324 (388)
                      .+.+=
T Consensus       279 ~v~~A  283 (737)
T KOG1524|consen  279 QLIVA  283 (737)
T ss_pred             eEEEe
Confidence            77653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.4e-19  Score=146.22  Aligned_cols=204  Identities=18%  Similarity=0.262  Sum_probs=154.2

Q ss_pred             eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      .+++|+++|..|++++.||++|+|++.+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++....     
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a-----  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA-----  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh-----
Confidence            789999999999999999999999998888888888899999999999999999999999 89999999863111     


Q ss_pred             eEEecccccceEEEEEEeCC---CceEEE-eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          151 SRMLSGHKGYVSCCQYVPDE---DTHLIT-SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~---~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                      ...-...+.....+.|+.++   .-++++ ...-+.|+.||+.....-..+...........|.++++++ ++++++.|+
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT  300 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT  300 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence            11112233345556776653   112333 2334556666654332211111111133456899999998 999999999


Q ss_pred             CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      .||.|.+++..........-+.|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999887555556678999999999999999999999998888877654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-18  Score=156.09  Aligned_cols=271  Identities=15%  Similarity=0.197  Sum_probs=189.3

Q ss_pred             CCCCcccCCCCceeeecccccc---CCeeEEEeCC--CCCeEEEEeCCCcEEEEECC-CC----CeeeEeee-------C
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHA---GKVYSLDWTS--ERNRIVSASQDGRLIVWNAL-TS----QKTHAIKL-------P  108 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~---~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~-~~----~~~~~~~~-------~  108 (388)
                      +..+..|+-...++...|..+.   ..|+.+.+-.  |..++++|+.||.|+||+-. ++    +.+.....       .
T Consensus      1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred             cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence            3444556666666666665443   4688888866  44589999999999999642 22    22222211       1


Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      .+.-.-+.|.....+|+++|.-..|+|||.....      .......+....|+++.-.-..++++++|..||.|++||.
T Consensus      1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred             CCCCeeeehhhhCCeEEecCCeeEEEEEecccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeec
Confidence            1112445677777778877778999999998733      2233334455677777766655689999999999999998


Q ss_pred             CCCce---EEEeecccccCCccC--eEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEeccc--C-CeeEEEEc
Q 016522          189 TTGLR---TSVFGGEFQSGHTAD--VLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHE--G-DVNTVKFF  259 (388)
Q Consensus       189 ~~~~~---~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~-~i~~~~~~  259 (388)
                      +....   +...     ..|...  |..+.+.+.+-..+++|+.+|.|++||+|.. .........|.  + ..+++..+
T Consensus      1239 R~a~~ds~v~~~-----R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1239 RMAPPDSLVCVY-----REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred             ccCCccccceee-----cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence            86543   3333     566666  9999998844456999999999999999984 23333333333  3 58999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      +....+|+|+. +.|+||++.. +.+..+....  .......+.+++|+|..-.+|+|+.|..|.||.....
T Consensus      1314 ~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99999999998 8999999864 3333332211  1122345799999999999999999999999986543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.83  E-value=2.2e-16  Score=134.69  Aligned_cols=281  Identities=16%  Similarity=0.117  Sum_probs=183.2

Q ss_pred             EEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522           82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (388)
                      +++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+       ....+.... ..
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~-~~   80 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGG-NP   80 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SS-EE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCC-Cc
Confidence            3556678999999999999999998776655567899999999999999999999999865       555555443 45


Q ss_pred             EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      ..++++++|...+++...++.+.++|.++.+.+..++.....  .....+.++..+|....++++.-..+.|.+.|....
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            779999998655556678999999999999988887532111  144567788888845446666566688988898776


Q ss_pred             CcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCC------------------------
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE------------------------  294 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------  294 (388)
                      ..................|+|++++++++ ..++.|-++|..+++....+.....+                        
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~  240 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY  240 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred             cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence            34433344345567889999999987765 45678889998877655433211000                        


Q ss_pred             --------------------------CCCCCeEEEEecCCCCEEEEE----ecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522          295 --------------------------NEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (388)
Q Consensus       295 --------------------------~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (388)
                                                ....+ ..+..+|+++++.+.    ...+.|.++|..+.+....+.   .....
T Consensus       241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~  316 (369)
T PF02239_consen  241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGK  316 (369)
T ss_dssp             SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT-
T ss_pred             eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCC
Confidence                                      00112 446678999999987    445799999999998887773   12223


Q ss_pred             CeeEEEECCCCCeEEEccCC--CeEEEeccce
Q 016522          345 RITCLGLSADGSALCTGSWD--TNLKVSLHYY  374 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~d--g~v~iw~~~~  374 (388)
                      .+..+.|+++|+.+..+..+  |.|.||+...
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             cEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            58999999999977666544  3699998654

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=1.2e-16  Score=124.86  Aligned_cols=240  Identities=15%  Similarity=0.184  Sum_probs=166.2

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-eeCC------CcEEEEeCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLD------SVCSIFNLNSP  141 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~vw~~~~~  141 (388)
                      ....++|+.|...+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+. |+.+      ..+.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999999988776 899998764443333333332222222223344443 3332      47999993321


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      .       .... .....+|.++.+.++   .+++.- .+.|.+|...+ .+.+..+..   ...+....+++-.. +..
T Consensus        86 ~-------~i~e-l~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et---~~NPkGlC~~~~~~-~k~  149 (346)
T KOG2111|consen   86 R-------CIIE-LSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIET---RSNPKGLCSLCPTS-NKS  149 (346)
T ss_pred             c-------EEEE-EEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeec---ccCCCceEeecCCC-Cce
Confidence            1       2222 234678999999874   244443 57899999884 455555522   12233344444333 333


Q ss_pred             EEEE-eeCCCceEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEEECCCCceeeEeeeccCCCCC
Q 016522          221 MFVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       221 ~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      +|+. |..-|.|++-|+..... +...+.+|.+.|.|++.+-+|.++|++|..|+ |+|||..+++.+..+.....   .
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~  226 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---R  226 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---h
Confidence            4443 55679999999987633 35788899999999999999999999999997 89999999999999876433   3


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ..|.+++|||+..+||+++..|+++||.+..
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            4599999999999999999999999998765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=138.88  Aligned_cols=264  Identities=16%  Similarity=0.154  Sum_probs=187.7

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      ..+..|.+.|.++.|+.++++|++|+.|..+++|.++..-......++...-..|...|.|++|... +..+++|+.+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcce
Confidence            3456788999999999999999999999999999987532111111222233456789999999986 478999999999


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ecccCCeeEEEEcc
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFP  260 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~  260 (388)
                      |...|+++.+.+..+..   ....+.|..+..+| -.+.|++.+.+|.|.+||.+....+...+  .........+.|+|
T Consensus       129 VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANE---NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             eEeeecccceeeeeecc---cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            99999999998888732   23456899999999 57899999999999999998764333332  22345677899999


Q ss_pred             -CCCEEEEeeCCCcEEEEECCCCceeeEeee-ccC-CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE-Eeecc
Q 016522          261 -DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLG  336 (388)
Q Consensus       261 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~  336 (388)
                       ...+|++.+..+-+-+||.+.......... ..+ +........+.|+|+|..+.+--....-.+||+-+.++ +....
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence             567788888889999999986543211111 000 11111246788999999887765555666788766433 33321


Q ss_pred             CCC--CCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          337 SLQ--NSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       337 ~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      -..  ......+.+++|..|- .+++|+.+-.|++|..
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKL  321 (609)
T ss_pred             CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEec
Confidence            000  0122357788887655 4999999999999985

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=7.8e-18  Score=134.94  Aligned_cols=274  Identities=15%  Similarity=0.122  Sum_probs=202.1

Q ss_pred             cccCCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCeeeEe------eeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           65 GHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      .-...|+.++|.-+++  .|...+.+..+..+.+.........      .....+|..++..  ...|++|-.+|.+.+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            3556788999987664  4554546777777777665544332      3344556555443  4467778889999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecc----cccCCccCeE
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGE----FQSGHTADVL  210 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~----~~~~~~~~i~  210 (388)
                      ....+.....   ....+..+ ..+..+.-++..+.++++|+..  ..+.+||++..+.+..-...    .....+-.++
T Consensus       131 ~~k~~d~hss---~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  131 HDKSGDLHSS---KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             eccCCccccc---cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            9986542211   12222222 4566677777777788889999  88999999988554433110    0011234467


Q ss_pred             EEEeeCCC--CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          211 SVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       211 ~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      ++.|.+ .  ...|++++.-+.+++||.+...+++..+.--+.+++++...|+++.+++|..-|.+..||++.++.....
T Consensus       207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            788887 4  7889999999999999999998999999999999999999999999999999999999999999888773


Q ss_pred             eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      ..    ...+.++++..+|.++++++++-|..|+|+|+.+.+++...     .....++++-+.++
T Consensus       286 ~k----g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  286 LK----GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD  342 (412)
T ss_pred             cC----CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence            32    22335999999999999999999999999999997777654     34556777777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.8e-19  Score=146.33  Aligned_cols=225  Identities=19%  Similarity=0.276  Sum_probs=168.5

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEee
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSS  178 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~  178 (388)
                      .....+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+      .....-.+|...|.++.|.|. ++.++++|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            3456688999999999999999999999999999999987533      244455799999999999995 456788999


Q ss_pred             CCCeEEEEecCCC----------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--
Q 016522          179 GDQTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--  246 (388)
Q Consensus       179 ~dg~v~i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  246 (388)
                      .|..|+++|+...          .....+     ..|...|..++..|.+.+.+.++++||+|+-+|++.+..+-...  
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~  189 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC  189 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence            9999999999852          222233     57888999999999777999999999999999999753222211  


Q ss_pred             -------ecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCc------------------eeeEeeeccCCCC----
Q 016522          247 -------HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH------------------QLQVYYQQHGENE----  296 (388)
Q Consensus       247 -------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~----  296 (388)
                             ...--...++..+| +..+|++|+.|-..++||.+...                  ++..+...+..+.    
T Consensus       190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence                   11223467899999 66789999999999999953211                  1111211111010    


Q ss_pred             ---CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          297 ---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       297 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                         ...++.++|+|+|.-|++.-....|+++|+..++....+
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence               112677899999998887777779999999887766554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=6.8e-17  Score=128.73  Aligned_cols=235  Identities=12%  Similarity=0.107  Sum_probs=175.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEec
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDI  188 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~  188 (388)
                      .+..+.|+.+...|..|+.|| .++|+.+....       ..........|.-+-|+.   .+++..+.+  +.++++++
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             ceeeeeeccceeEEEccCCCc-eeEEecCchHH-------hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence            456667999999999999988 47887765321       111122234455666664   345444433  45999999


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEE
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l  265 (388)
                      +.+..+..+      ....+|.++.++.   +.|+++-.+ .|+|||++.. +.+.++..   +...+.++++++.+.++
T Consensus        76 Kk~~~ICe~------~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   76 KKKTTICEI------FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYL  144 (391)
T ss_pred             ccCceEEEE------ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCCceE
Confidence            988888776      4567899998853   456655544 4999999988 66665543   44456666777677788


Q ss_pred             EEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc-EEEEEcccceEEeeccCCCCCc
Q 016522          266 GTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       266 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      +.-+  ..|.|.+||+.+-++...+..+.     +.+.+++|+++|.+||+++..|+ |+||.+.+++.+.++..-  .-
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~-----~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~  217 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPVNTINAHK-----GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TY  217 (391)
T ss_pred             EecCCCCCceEEEEEcccceeeeEEEecC-----CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ce
Confidence            8643  46899999999999988886544     45999999999999999999995 799999999999998531  12


Q ss_pred             CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      -..|.+++|+|++++|++.+..++|+||....
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            35689999999999999999999999998654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=131.29  Aligned_cols=277  Identities=17%  Similarity=0.154  Sum_probs=186.9

Q ss_pred             CcccccccCCCCCcccCCCCceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522           37 DVAGYSRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC  115 (388)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  115 (388)
                      +...+++...+.+..|...+.+....++ .|+..|+.+.-.|+ ..|.+-+.|+.+.+|++.-+..+..   |.-.+.++
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nsl  100 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSL  100 (323)
T ss_pred             chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeecccc
Confidence            3345677788888999999988888898 67789999999987 5788999999999999876544332   22334444


Q ss_pred             EECC-----CCC----EEEEeeCCC-cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC--ceEEEeeCCCeE
Q 016522          116 AFSP-----TGQ----SVACGGLDS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTC  183 (388)
Q Consensus       116 ~~~~-----~~~----~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v  183 (388)
                      .|++     .++    .++.-+... .+.+-|.....   ..........+..+.++|..+.-+..  -++++|..+|.|
T Consensus       101 gFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv  177 (323)
T KOG0322|consen  101 GFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV  177 (323)
T ss_pred             ccccceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence            4433     111    111111100 01111111100   00000011123446677776543322  346788899999


Q ss_pred             EEEecCCCceEEEeecc-----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--e-EEEecccCCeeE
Q 016522          184 VLWDITTGLRTSVFGGE-----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--V-RTFHGHEGDVNT  255 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~-~~~~~~~~~i~~  255 (388)
                      .+||+.++..+..++..     ....|..++.++.+.+ ..+.=++|+.+..+..|++......  + ......+-.|..
T Consensus       178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g  256 (323)
T KOG0322|consen  178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG  256 (323)
T ss_pred             EEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence            99999997443333211     0156889999999987 4455567888888999988644111  1 122223346888


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +.+-||++.+|+++.|+.|++|+.++..++..+..+.     ..|.+++|+|+.+.+|+++.|++|.+|++
T Consensus       257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-----agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-----AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999998886544     35999999999999999999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-17  Score=139.12  Aligned_cols=278  Identities=13%  Similarity=0.176  Sum_probs=201.7

Q ss_pred             ccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      |...-+.|..+|||+|+ |||...-.|++||+........-......|.-.-.+.|-..++.-..|..|.+-......  
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h--  127 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH--  127 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee--
Confidence            67778899999999975 567777899999998766554444444556555566665556655667776654332210  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                           ....+   ...-.+++++.-.-. |+.++....|+-++++.|..+..+     ....+.++++..++ ...+|++
T Consensus       128 -----y~~RI---P~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~-~hgLla~  192 (703)
T KOG2321|consen  128 -----YRTRI---PKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINE-EHGLLAC  192 (703)
T ss_pred             -----eeeec---CcCCccccccCCCcc-EEEeecCcceEEEEcccccccccc-----ccccccceeeeecC-ccceEEe
Confidence                 01111   112234555543323 555555567999999999988888     56668899999998 7789999


Q ss_pred             eeCCCceEEEECCCCCcceEEEe------cccC-----CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          225 GSCDSTARLWDTRVASRAVRTFH------GHEG-----DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      |+.+|.|..||.+.. ..+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++......  
T Consensus       193 Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~--  269 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG--  269 (703)
T ss_pred             cccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC--
Confidence            999999999999876 3333332      2333     3999999999999999999999999999998887665432  


Q ss_pred             CCCCCCeEEEEecCCC--CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          294 ENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                        ...+|..+.|.+.+  +.+++. ....++|||-.+++....+.     ....++.+++-|++-++++|..++.+..|.
T Consensus       270 --~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  270 --YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHTYY  341 (703)
T ss_pred             --CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-----ccCCcCceeeecCCceEEEecCCCcceeEE
Confidence              33468999997763  345444 45589999999999998873     345599999999999999999988886654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=2.9e-17  Score=149.46  Aligned_cols=272  Identities=15%  Similarity=0.108  Sum_probs=187.4

Q ss_pred             CCCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEE
Q 016522           98 TSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus        98 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (388)
                      .|..+..+..|...+..++.++.. .+|++|+.||+|++|+...-....+......++....+.+.++...+.+ ..++.
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence            466777888888888888887654 9999999999999999987554434444555555567889999999887 56888


Q ss_pred             eeCCCeEEEEecCCCc--eEEEeecccc-cCCccCeEEE-EeeCCCCc-EEEEeeCCCceEEEECCCCCcceE--EEecc
Q 016522          177 SSGDQTCVLWDITTGL--RTSVFGGEFQ-SGHTADVLSV-SISGSNSR-MFVSGSCDSTARLWDTRVASRAVR--TFHGH  249 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~--~~~~~~~~~~-~~~~~~i~~~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~  249 (388)
                      ++.||.|.+.++....  .......... ....+.+.++ ++...... .++.+...+.|..||++.. ....  .....
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLR 1194 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCcc
Confidence            8999999999987621  1111111110 1222333333 33332334 7888899999999999876 3222  22334


Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEe--cCCcEEEE
Q 016522          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGY--SNGDCYVW  324 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~i~i~  324 (388)
                      .+.|++++.+|.++++++|+..|.+.+||++-+.++..+.....    .++..+..+|-.   .+.++++  ..+.|.+|
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc----CCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            57899999999999999999999999999998888777654332    357777766533   3444444  46789999


Q ss_pred             EcccceEEeeccCC-----------CC----CcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          325 DTLLAKVVLNLGSL-----------QN----SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       325 d~~~~~~~~~~~~~-----------~~----~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ++.++.....+...           ..    .+.-.....++..-+.++.+|+.|..|+.|++...
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            99887655444311           00    11222233344445668999999999999998653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.2e-16  Score=140.37  Aligned_cols=234  Identities=15%  Similarity=0.112  Sum_probs=156.4

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.+||...... ..+..+...+...+|+|||+.|+..+.   +..+.+|++.++.        ...+....+.+....|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--------~~~l~~~~~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEccCCCCCcCCeEE
Confidence            688888765443 444456667999999999999887543   3578999987643        1122222333456899


Q ss_pred             EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEE--ECCCCCc
Q 016522          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLW--DTRVASR  241 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~  241 (388)
                      +|+|..++++.+.+|  .|.+||+.++......      .+...+....|+| +++.|+..+ .+|...+|  |+..+  
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g--  321 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG--  321 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc------CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--
Confidence            999866555555555  5889999887655433      3345678899999 666555444 44555555  55443  


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      ....+..+........|+|||++|+..+.+   ..|.+||+.++.... +....      ......|+|||++|+.++.+
T Consensus       322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~------~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF------LDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC------CCCCceECCCCCEEEEEEcC
Confidence            334444444456678999999999876643   358889998876432 22111      12456799999999998877


Q ss_pred             Cc---EEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          319 GD---CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       319 g~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      +.   ++++++ ++.....+    ..|.+.+...+|+|
T Consensus       395 ~~~~~l~~~~~-~G~~~~~l----~~~~~~~~~p~Wsp  427 (429)
T PRK03629        395 GMGSVLNLVST-DGRFKARL----PATDGQVKFPAWSP  427 (429)
T ss_pred             CCceEEEEEEC-CCCCeEEC----ccCCCCcCCcccCC
Confidence            64   677777 45555555    56778888999987

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.5e-17  Score=146.51  Aligned_cols=234  Identities=16%  Similarity=0.158  Sum_probs=154.2

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (388)
                      ....|+..... .+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.... ....+....++|+|||+.|
T Consensus       185 ~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        185 EVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEE
Confidence            34444543333 45677788899999999999999887654   3699999988764322 2222234578999999988


Q ss_pred             EEee-CCCcEEEE--eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          125 ACGG-LDSVCSIF--NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       125 ~~~~-~dg~i~vw--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      +.++ .+|.+.||  |+.++.        ...+..+...+....|+|+|..+++++..+|...+|++.........    
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----  330 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----  330 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----
Confidence            8765 67876666  544322        23455566778889999998665666667888888876543221122    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-  280 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  280 (388)
                       ..+..  ....|+| +++.++..+.++ +.+||+.++ ... .+... .....+.|+|+|++|+.++.++...+|++. 
T Consensus       331 -l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        331 -VGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             -ecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence             11222  3567998 777777776654 666998876 322 22211 134568899999999999999988888753 


Q ss_pred             -CCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522          281 -TGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                       ++.....+....     ..+...+|+|-
T Consensus       403 ~~G~~~~~l~~~~-----g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPGSD-----GQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccCCC-----CCCCCcccCCC
Confidence             466555553322     23677888874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=2.8e-19  Score=156.16  Aligned_cols=243  Identities=21%  Similarity=0.320  Sum_probs=181.2

Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (388)
                      +..+.+|...|.|..|...|.++++|+.|..++||..++..       +.....+|.+.|+.++.+..+ .++++++.|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~  254 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNN-TMIAAASNDK  254 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhh-hhhhhcccCc
Confidence            44556788899999999999999999999999999988755       677889999999999999874 6789999999


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE--EEec-ccCCeeEEEE
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHG-HEGDVNTVKF  258 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~-~~~~i~~~~~  258 (388)
                      .|++|.+.++..+..+     .+|.+.|++++|+|     +.+.+.||++++||.+-......  .... ....+.++.|
T Consensus       255 vIrvWrl~~~~pvsvL-----rghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             eEEEEecCCCchHHHH-----hccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence            9999999999999988     89999999999999     33788899999999882100000  0000 0011222222


Q ss_pred             ccCCCEEE-------------------------------------EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          259 FPDGNRFG-------------------------------------TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       259 ~~~~~~l~-------------------------------------~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      ..++.-++                                     +.-.+-.+.+|++.++........     +...+.
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-----hsd~~y  399 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-----HSDEVY  399 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-----ccccee
Confidence            22222222                                     222344566677666655555433     344588


Q ss_pred             EEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          302 SIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       302 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .+.++|-+. ...+++.||+..|||+-.+.++....   .+| +.+..-+|++||..++....-|.+.|..
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---IGH-GKLVDGKFSQDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeecccCCcceeee---ccc-ceeeccccCCCCceEecCCCCCceEEec
Confidence            899999776 44568899999999999988887764   344 5667789999999998888888888875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=2.5e-16  Score=123.82  Aligned_cols=277  Identities=17%  Similarity=0.214  Sum_probs=194.2

Q ss_pred             cCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~  144 (388)
                      -+.|.-+.|..|..+++ ....|+.|.+|++...+-...+.....++.++.|+|+|+.+ .+...+-.|.||.+.+.+  
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--  125 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--  125 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--
Confidence            35788899998886655 55678899999999999999999899999999999999655 556678999999998843  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeC------------------------------------CCeEEEEec
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------------------------------------DQTCVLWDI  188 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------------------------dg~v~i~d~  188 (388)
                            ...+.-.+..+..++|+|+| ++.+..+.                                    ++.+.+||-
T Consensus       126 ------~~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  126 ------GYLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             ------eEEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence                  12222334455777888886 34333321                                    223445553


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC----------------------------
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----------------------------  240 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------------  240 (388)
                      --...+..+      ...-.+..+.|+| .++++++|+.|+.+++.+--+.+                            
T Consensus       199 ~Leykv~aY------e~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  199 VLEYKVYAY------ERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             hhhheeeee------eeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence            222222221      2345688899999 88999999999999886532110                            


Q ss_pred             -------------------------------cceEEEe------cccCCeeEEEEccCCCEEEEeeC--CCcEEEEECCC
Q 016522          241 -------------------------------RAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRT  281 (388)
Q Consensus       241 -------------------------------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  281 (388)
                                                     ..+..++      ...-.+.-++|++|..++++-..  -+.+.+||++.
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence                                           0000011      11123567899999999888653  35799999987


Q ss_pred             CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      .+....+...      .+|....|+|....|+.+.....+++|.......+..-     ...-.|..+.|..+|..++..
T Consensus       352 l~l~avLiQk------~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-----~~GF~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  352 LKLHAVLIQK------HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-----KKGFNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             hhhhhhhhhc------cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----CCCceeeeEEecCCCcEEEEE
Confidence            7655554332      24999999999998888888889999998665554432     334689999999999999999


Q ss_pred             cCCCeEEEe
Q 016522          362 SWDTNLKVS  370 (388)
Q Consensus       362 ~~dg~v~iw  370 (388)
                      +.|..-.-.
T Consensus       421 ~kDafc~a~  429 (447)
T KOG4497|consen  421 GKDAFCVAI  429 (447)
T ss_pred             cCCceEEEE
Confidence            998754443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.8e-16  Score=139.50  Aligned_cols=238  Identities=16%  Similarity=0.173  Sum_probs=152.8

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (388)
                      ..|.++|. .+.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.++.       . ..+....+.+....
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~~  246 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAPA  246 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccceE
Confidence            35677776 445445555667779999999999999887643   359999998754       1 22233334556789


Q ss_pred             EEeCCCceEEEeeCCCeEEEEe--cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEECCCCCcc
Q 016522          166 YVPDEDTHLITSSGDQTCVLWD--ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRA  242 (388)
Q Consensus       166 ~~~~~~~~l~~~~~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~  242 (388)
                      |+|+|..++++.+.+|...+|.  +..+. ...+     ..+........|+| +++.++ ++..+|...+|.+......
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-----t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-----TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-----CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence            9999866666777888766665  44443 2333     33444556788999 565555 4444567777765432222


Q ss_pred             eEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      ...+..+.......+|+|+|++|+..+.++   .|.+||+.+++..... .. .     ......|+|+|++|+.++.++
T Consensus       320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~-----~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-T-----RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-C-----CccCceECCCCCEEEEEEecC
Confidence            333332333345689999999998877654   5999999887654322 11 1     135678999999888776544


Q ss_pred             ---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          320 ---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                         .+++.+. ++.....+    ..+.+.+...+|+|-
T Consensus       393 g~~~l~~~~~-~g~~~~~l----~~~~g~~~~p~wsp~  425 (427)
T PRK02889        393 GRSVLAAVSS-DGRIKQRL----SVQGGDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEEC-CCCceEEe----ecCCCCCCCCccCCC
Confidence               3566666 34444444    345667777888873

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=3.1e-15  Score=127.68  Aligned_cols=272  Identities=15%  Similarity=0.167  Sum_probs=175.1

Q ss_pred             CCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      .......+..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.... ...+++++||++++
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVY   93 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEE
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEE
Confidence            34555667777888888886555445578999999999999999999999999999999987665 78899999999999


Q ss_pred             Eee-CCCcEEEEeCCCCCCCCCCCceeEEecc-------cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522          126 CGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG-------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       126 ~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  197 (388)
                      ++. ..+.+.++|.++.+       ..+.+..       ....+..+..+|..+.++++.-..+.|.+.|.........-
T Consensus        94 v~n~~~~~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             EEEEETTEEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             EEecCCCceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            876 58999999998744       4444332       23456777778876545555555688988887765433221


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCc-----------------------------------
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR-----------------------------------  241 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~-----------------------------------  241 (388)
                      .    ...........|+| +++++ ++...+..|.++|..+...                                   
T Consensus       167 ~----i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~  241 (369)
T PF02239_consen  167 T----IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF  241 (369)
T ss_dssp             E----EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred             e----ecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence            1    23345667788998 55554 4445566777777664411                                   


Q ss_pred             -------------------ceEEEecccCCeeEEEEccCCCEEEEe----eCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          242 -------------------AVRTFHGHEGDVNTVKFFPDGNRFGTG----SDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       242 -------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                                         .++.+.....+ .-+..+|+++++.+.    ...+.|.++|.++.+....+......    
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----  316 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----  316 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----
Confidence                               11111111122 446678999999987    45578999999998776666433221    


Q ss_pred             CeEEEEecCCCCEEEEEecCC--cEEEEEcccceEEeec
Q 016522          299 HVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNL  335 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  335 (388)
                      .+..+.|+++|+++.++..++  .|.+||..+.+.+..+
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence            388999999999776655543  6999999999998887

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.9e-16  Score=139.96  Aligned_cols=234  Identities=16%  Similarity=0.154  Sum_probs=155.0

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.+||.. +.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+|++.++.        ...+....+...+..|
T Consensus       185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~~  255 (433)
T PRK04922        185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPSF  255 (433)
T ss_pred             EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCceE
Confidence            68899975 44445566667779999999999999987643   469999997644        1223333444557899


Q ss_pred             EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCc--eEEEECCCCCc
Q 016522          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDST--ARLWDTRVASR  241 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~  241 (388)
                      +|+|..++++.+.+|  .|++||+.++.....      ..+.......+|+| +++.++.++ .+|.  |.++|+..+ .
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g-~  327 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG-S  327 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence            999876666666666  599999988765432      23444456789999 666555544 4555  555666544 2


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                       ...+..+.......+|+|+|++|+..+.++   .|.+||+.+++.. .+...  .    ......|+|+|++++..+.+
T Consensus       328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~----~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG--S----LDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC--C----CCCCceECCCCCEEEEEEec
Confidence             333333334455789999999998765443   5999999877654 22211  1    13456899999988776653


Q ss_pred             ---CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          319 ---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       319 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                         +.|+++++.. .....+    ..+.+.+...+|+|
T Consensus       400 ~g~~~L~~~~~~g-~~~~~l----~~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTDG-RVRQRL----VSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECCC-CceEEc----ccCCCCCCCCccCC
Confidence               3688888754 344444    34556677778876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=1.1e-18  Score=142.78  Aligned_cols=243  Identities=16%  Similarity=0.204  Sum_probs=193.5

Q ss_pred             eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      .-..+....-....+.++.+|++++.|+..|.+..+|+.+..       +...+ .-...|.++.|..+. +++++ ...
T Consensus       121 k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------L~~Ei-~v~Etv~Dv~~LHne-q~~AV-AQK  190 (545)
T KOG1272|consen  121 KHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------LHFEI-NVMETVRDVTFLHNE-QFFAV-AQK  190 (545)
T ss_pred             hhccccccccCCeeeeecCCccEEEecCCccceeeeecccce-------eeeee-ehhhhhhhhhhhcch-HHHHh-hhh
Confidence            333444445557789999999999999999999999998854       22222 234678888998863 54444 456


Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      ..++|||- .|..+..+      .....+..+.|.| ...+|++++..|.++.-|+..+ +.+..+..-.+.+..++-+|
T Consensus       191 ~y~yvYD~-~GtElHCl------k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  191 KYVYVYDN-NGTELHCL------KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             ceEEEecC-CCcEEeeh------hhcCchhhhcccc-hhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC
Confidence            78999995 45555554      3456789999999 8889999999999999999998 78888887788899999999


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC
Q 016522          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (388)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (388)
                      -+..+-+|...|+|.+|.....+++..+..+.+     +|.++++.++|+|+++.+.|..++|||++....+.++.    
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----  332 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----  332 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccccccceee----
Confidence            889999999999999999999888888866554     49999999999999999999999999999888766652    


Q ss_pred             CcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          341 SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      . ..+...+++|..|  +++++....|.||.-..
T Consensus       333 t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  333 T-PHPASNLSLSQKG--LLALSYGDHVQIWKDAL  363 (545)
T ss_pred             c-CCCcccccccccc--ceeeecCCeeeeehhhh
Confidence            2 3467788888665  45556678899997544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=8.8e-16  Score=120.13  Aligned_cols=238  Identities=12%  Similarity=0.195  Sum_probs=166.5

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------CeEEE
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL  185 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i  185 (388)
                      ..+++|+.|...+++|..+| .+||+.+.-++.     ..+......-.+.-|-|-.  +.+.+.||.+      ..|.|
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEE
Confidence            45699999999999998777 799998752211     0111111112223333332  2334445443      47999


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCC
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGN  263 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  263 (388)
                      ||-....++..+      ....+|.++.+.+   ..+++.- .+.|.+|......+.++.+.....|=--++..|  +..
T Consensus        80 WDD~k~~~i~el------~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   80 WDDLKERCIIEL------SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             EecccCcEEEEE------EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence            997667777765      5678999999976   3455444 678999999855466666654333222333444  445


Q ss_pred             EEEEee-CCCcEEEEECCCCcee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc-EEEEEcccceEEeeccCCC
Q 016522          264 RFGTGS-DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       264 ~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~  339 (388)
                      +||.-+ .-|.|+|-|+...+.-  ..+.     .|.+.|.+++.+-+|..+|+++..|+ |+|||..+++.+.++..  
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--  222 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--  222 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--
Confidence            566544 5689999999876652  3332     34456999999999999999999995 89999999999999853  


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ......|.+|+|+|++.+|++++.-|+|+|+....
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            23456899999999999999999999999998654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2.1e-15  Score=133.52  Aligned_cols=233  Identities=15%  Similarity=0.141  Sum_probs=156.9

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.++|.. +.....+..+...+.+.+|+|||+.|+..+.   +..|.+||+.++.        ...+..+.+.+....|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEE
Confidence            78888874 4555666677788999999999999888764   4689999998754        2334455667778899


Q ss_pred             EeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCC--ceEEEECCCCCc
Q 016522          167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR  241 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~  241 (388)
                      +|+|..++++.+.++.  |.+||+.++.... +     ..+........|+| +++.++..+ .+|  .|+++|+...  
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L-----t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~--  324 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L-----TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS--  324 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceEE-c-----cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC--
Confidence            9998766667776665  7778988876543 3     34445567789999 666655544 444  5777787644  


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      ....+..+...+....|+|+|+.|+..+.+   ..|.+||+..+.. ..+...      ..+....|+|||+.|+..+.+
T Consensus       325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~------~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG------FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC------CCCCCCeECCCCCEEEEEEcc
Confidence            334444445566778999999999887643   3588888765443 222211      125678899999988765543


Q ss_pred             ------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          319 ------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       319 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                            ..++++|+..+.. ..+    . ..+.+...+|+|
T Consensus       398 ~~~~~~~~L~~~dl~g~~~-~~l----~-~~~~~~~p~Wsp  432 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNE-REV----P-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCcceEEEEECCCCce-EEc----c-CCCCccCcccCC
Confidence                  2578888766544 333    1 233456667776

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.1e-15  Score=121.73  Aligned_cols=240  Identities=18%  Similarity=0.241  Sum_probs=159.1

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      +..+..++|++.-..++++..|-.|++|+-....       ...........|+|++|-|.+...++.|+..| |.+|..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence            3457889999988889999999999999987622       12222234568999999999888888888765 899976


Q ss_pred             CCCceEEEe-------e-cccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          189 TTGLRTSVF-------G-GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       189 ~~~~~~~~~-------~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      .........       . ..........|+++.|.+ ++..+++++. |..|.+||..++ ..+.......+.+.-+.||
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             CcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEc
Confidence            532111110       0 001123347899999999 6667776654 678999999987 3333333345678899999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----------
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----------  329 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------  329 (388)
                      ||+.+|++++-|+..++|...............     +.|...+|+|+|++|..... |.-++|.+...          
T Consensus       248 Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-----grvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  248 PDGDVLFAATCDAVFRLWQENQSWTKERWILGS-----GRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             CCCCEEEEecccceeeeehhcccceecceeccC-----CceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            999999999999999999654332222222211     25899999999997665533 23334432210          


Q ss_pred             -----eEEeeccC-----CCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          330 -----KVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       330 -----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                           ..+..+..     -.....+++.+++|+|.|.+|++.-..
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence                 01111110     001235688999999999999986543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.3e-14  Score=122.12  Aligned_cols=276  Identities=15%  Similarity=0.199  Sum_probs=178.3

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-----eC-----CCcEEEE
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-----GL-----DSVCSIF  136 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~vw  136 (388)
                      ..+.+..+++++|+++|.+. +..+.|++..++..+.+....  .+.++.|+|.|.+|.+=     ..     .-.+.+|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            34577888999998887765 568999999888744444333  68999999999998762     11     2357799


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      ++++...       ...+......-++..|+.|. . +++=-..+.+.+|++.+.+....      .-|...|+.+.++|
T Consensus       111 ~vet~~~-------~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSp  175 (566)
T KOG2315|consen  111 NVETGVQ-------RSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSP  175 (566)
T ss_pred             eecccee-------hhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCccceee------eeeccceeeEEecC
Confidence            9887321       11111111111477888864 2 44444456788888876433222      23455666666666


Q ss_pred             C-CCcEEEE-----eeCCCceEEEECCCC---------------------------------------------------
Q 016522          217 S-NSRMFVS-----GSCDSTARLWDTRVA---------------------------------------------------  239 (388)
Q Consensus       217 ~-~~~~l~~-----~~~dg~i~i~d~~~~---------------------------------------------------  239 (388)
                      . ....+++     .+.-+.+++|.....                                                   
T Consensus       176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl  255 (566)
T KOG2315|consen  176 GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL  255 (566)
T ss_pred             CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence            3 2222322     223334555543310                                                   


Q ss_pred             ----CcceEEEecccCCeeEEEEccCCCEEEEe--eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522          240 ----SRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       240 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  313 (388)
                          ......--...++|.++.|+|+++-++++  -+--++.|||++ +.++..+..       ++-+++-|+|.|++|+
T Consensus       256 l~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-------gpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  256 LATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-------GPRNTAFFNPHGNIIL  327 (566)
T ss_pred             EEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-------CCccceEECCCCCEEE
Confidence                01111111236899999999999877654  466789999987 455544422       2368899999999888


Q ss_pred             EEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------CCeEEEeccce
Q 016522          314 AGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKVSLHYY  374 (388)
Q Consensus       314 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~~~  374 (388)
                      .++-   .|.|-|||+.+.+.+..+    ...  .-+-+.|+|||++++|+..      |+.++||++..
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i~~~----~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLIAKF----KAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EeecCCCCCceEEEeccchhhcccc----ccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            7665   579999999998888776    332  3456789999999999874      68899999754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=3.4e-15  Score=120.01  Aligned_cols=246  Identities=13%  Similarity=0.194  Sum_probs=178.0

Q ss_pred             CccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          109 CAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       109 ~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      ...+..++|.-++  ..+...+.+..+..+.+....-.. ............++|..+....   ..|++|-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCcccc-ccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence            3457777776554  344444466666666666533111 1111123344556777776653   468899999999999


Q ss_pred             ecCCCc----eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--CceEEEECCCCCcceEEEec---------ccC
Q 016522          187 DITTGL----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHG---------HEG  251 (388)
Q Consensus       187 d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~  251 (388)
                      ..+.+.    ....+      .....+..+.-++....++++|+..  ..+.+||+... +.+..-..         -.-
T Consensus       131 ~~k~~d~hss~l~~l------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKL------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             eccCCccccccceee------ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeee
Confidence            988543    12222      2335566677777677888889999  89999999866 33222111         112


Q ss_pred             CeeEEEEccC--CCEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          252 DVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       252 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .++.+.|-+.  ...|++++.-+.+++||.+.++.. ..+...     ..+++++...|+++++++|..-|.+..||++.
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~  278 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG  278 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeeeecCCCcEEEEecccchhheecccC
Confidence            4678899886  889999999999999999876544 334322     23599999999999999999999999999999


Q ss_pred             ceEEee-ccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          329 AKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       329 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++.... +    .+..+.|+++..+|.+++|+++|.|..|+|++...
T Consensus       279 ~kl~g~~~----kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  279 GKLLGCGL----KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ceeecccc----CCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            998876 5    78899999999999999999999999999999765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=2.4e-15  Score=116.67  Aligned_cols=151  Identities=22%  Similarity=0.299  Sum_probs=109.1

Q ss_pred             EEEEeeCCCCcEEEE-eeC---------CCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEe--eCCCcEEE
Q 016522          210 LSVSISGSNSRMFVS-GSC---------DSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTG--SDDGTCRL  276 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~-~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i  276 (388)
                      ..+.|+| .+..|++ ...         -|...+|.++....+...+.. ..++|.+++|+|+|+.|++.  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4567787 4444443 331         234566666544455555543 34579999999999987654  45679999


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      ||++ ++.+..+..       ..+..+.|+|+|++|++++.   .|.|.+||..+.+.+...     .| ..++.++|+|
T Consensus        88 yd~~-~~~i~~~~~-------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVK-GKKIFSFGT-------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----EH-SDATDVEWSP  153 (194)
T ss_pred             EcCc-ccEeEeecC-------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----cc-CcEEEEEEcC
Confidence            9996 555555422       23788999999999999864   467999999988888775     23 3578999999


Q ss_pred             CCCeEEEccC------CCeEEEecccee
Q 016522          354 DGSALCTGSW------DTNLKVSLHYYI  375 (388)
Q Consensus       354 ~~~~l~s~~~------dg~v~iw~~~~~  375 (388)
                      ||++|+++..      |+.++||.+...
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEecCe
Confidence            9999999874      788999997653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.71  E-value=3.2e-15  Score=118.28  Aligned_cols=257  Identities=15%  Similarity=0.216  Sum_probs=188.1

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE-CCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN-ALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      .++...+.++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-.+|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            34567788999999999999999888999999999999994 34455443332 23456899999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +.-+.+...-   ......+....|...+..+-|+... ..+++.+.|..+.---.+.+..+..+..      ....+++
T Consensus        92 vtefs~sedf---nkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------~~~~t~~  161 (404)
T KOG1409|consen   92 VTEFALSEDF---NKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF------ETPASAL  161 (404)
T ss_pred             EEEEEhhhhh---hhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe------eccCCCC
Confidence            9999887532   2334566677899999999998764 6788888888776544555544433311      1111222


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      .+.-   .+...|...|.|....+... -.++..+.+|.+.+.+++|.|....|++|..|..+.+||+...+-.......
T Consensus       162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence            2221   15556666777666554322 3678889999999999999999999999999999999999765544433222


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                          +...+..+...+--+.+++++.||.|.+||++.
T Consensus       239 ----h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  239 ----HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ----chhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence                223477777777778999999999999998754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.71  E-value=7.2e-15  Score=116.33  Aligned_cols=279  Identities=18%  Similarity=0.276  Sum_probs=180.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCC------------ccEEEEEECCCC--CEEEEe
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG  127 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  127 (388)
                      .+-|.++.|...|.+||||..+|.|.++.-....     ....++.|.            ..|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4578999999999999999999999999754322     122333333            458889998865  567788


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      +.|.+|++|.+............  ...+..+.++++..       .+.+..|-.+.      ..+.+.+    ...|.-
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~--~~~~~~~~~~~lr~-------p~~~~~~~~ve------a~prRv~----aNaHty  165 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNL--PEEGPPGTITSLRL-------PVEGRHDLEVE------ASPRRVY----ANAHTY  165 (433)
T ss_pred             cCCcceeeeeeeccccccccccc--cccCCCCccceeec-------eeeccccceee------eeeeeec----ccccee
Confidence            89999999999874422111000  01111122222221       11111111110      0112222    268899


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cc-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH-----EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  279 (388)
                      .|+++.++. +...++++ .|=.|.+|++....+......  ++     ..-|++..|+| ..+.++-.+..|+|++.|+
T Consensus       166 hiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  166 HINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             EeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            999999997 66666665 477899999876644443332  22     23588999999 5678888889999999999


Q ss_pred             CCCceeeE----eeeccCC-------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcC----
Q 016522          280 RTGHQLQV----YYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHE----  343 (388)
Q Consensus       280 ~~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~----  343 (388)
                      +.......    +.....+       .-...|..+.|+++|+|+++-+. -+|.+||++ ..+++.++    ..|.    
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~----~vh~~lr~  318 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY----PVHEYLRS  318 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE----eehHhHHH
Confidence            85332111    1111111       11235889999999999998744 489999994 45555554    2221    


Q ss_pred             --------C---CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          344 --------G---RITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       344 --------~---~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                              +   .-..++|+.++.+++||+....++++.
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence                    2   235678999999999999999999998

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=1e-12  Score=112.54  Aligned_cols=284  Identities=16%  Similarity=0.131  Sum_probs=176.8

Q ss_pred             EEEEeCC----CcEEEEEC--CCCCeeeEe-eeCCccEEEEEECCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCce
Q 016522           82 IVSASQD----GRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        82 l~t~~~d----g~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      ++.|+..    +.|.+|++  .+++....- .........++++|++++|+++..    +|.|..|++....   +.+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~   78 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTL   78 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEE
Confidence            3455554    68888887  444332211 123455788999999999999876    5789999988632   22333


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEee---c-----ccccCCccCeEEEEeeCCCCcE
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG---G-----EFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~---~-----~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                      .............++++|++..++++...+|.|.++++... .......   .     ...........++.++| ++++
T Consensus        79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~  157 (345)
T PF10282_consen   79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRF  157 (345)
T ss_dssp             EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred             eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCE
Confidence            33333334455678999998655555567999999999874 3222211   0     00012345678999999 6555


Q ss_pred             EEEe-eCCCceEEEECCCCCcceE---EEe-cccCCeeEEEEccCCCEEEEee-CCCcEEEEECC--CCce--eeEeeec
Q 016522          222 FVSG-SCDSTARLWDTRVASRAVR---TFH-GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQ--LQVYYQQ  291 (388)
Q Consensus       222 l~~~-~~dg~i~i~d~~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~  291 (388)
                      +++. -....|.+|++......+.   .+. ........+.|+|+++++++.. .++.|.+|++.  ++..  .......
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            5554 3445899999976632222   222 2345678999999999887665 57789999988  3322  2222211


Q ss_pred             c-CCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcc--cce--EEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CC
Q 016522          292 H-GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WD  364 (388)
Q Consensus       292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d  364 (388)
                      . ..........++++|||++|+++.. .+.|.+|++.  +++  .+..+    .........++++|+|++|++++ .+
T Consensus       238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~----~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV----PTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE----EESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE----eCCCCCccEEEEeCCCCEEEEEecCC
Confidence            1 1111225789999999999888764 5689999983  232  33333    22334589999999999998876 57


Q ss_pred             CeEEEeccc
Q 016522          365 TNLKVSLHY  373 (388)
Q Consensus       365 g~v~iw~~~  373 (388)
                      +.|.+|...
T Consensus       314 ~~v~vf~~d  322 (345)
T PF10282_consen  314 NTVSVFDID  322 (345)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            899999764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.1e-15  Score=126.29  Aligned_cols=265  Identities=19%  Similarity=0.260  Sum_probs=193.2

Q ss_pred             eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeC
Q 016522          101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSG  179 (388)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~  179 (388)
                      ....+..|.+.|..+.|+..|..|++|+.|..|.+||+....      +......+|...|....|.|. +...+++++.
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccc
Confidence            445677899999999999999999999999999999998755      234556789888888888885 3456999999


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---ecccC---Ce
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEG---DV  253 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~---~i  253 (388)
                      ||.|++=.+.........  .....|.++|.-++.-|.....|.+++.|+.+.-+|++.. .+...+   ..+..   ..
T Consensus       208 dgqvr~s~i~~t~~~e~t--~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENT--KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGL  284 (559)
T ss_pred             cCceeeeeeccccceecc--eecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceee
Confidence            999998776543322211  1116899999999999988999999999999999999876 332222   22333   46


Q ss_pred             eEEEEcc-CCCEEEEeeCCCcEEEEECCCCcee------eEeeeccC-CCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          254 NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       254 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      ..++..| +...+++|+.|..+++||.+.-...      ..+...+. ......|++++|+.++.-|.++..|-.|++|.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            7888999 4458999999999999998753322      22222221 12334599999999988888888999999995


Q ss_pred             cccceE--Ee------ec-cCCCCCcCC--CeeEEE-ECCCCCeEEEccCCCeEEEeccce
Q 016522          326 TLLAKV--VL------NL-GSLQNSHEG--RITCLG-LSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       326 ~~~~~~--~~------~~-~~~~~~~~~--~v~~~~-~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      -..+.-  ..      .+ ....++|..  .|..+- |-|...++++|+.-|.|.||....
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            432211  00      01 111256654  466665 467889999999999999998543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=5.5e-14  Score=124.52  Aligned_cols=204  Identities=15%  Similarity=0.119  Sum_probs=137.4

Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      ..|.++|.+...        ...+..|...+.+..|+|+|.. |+..+   .+..|.+||+.++.....      ..+..
T Consensus       182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~l------~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQRELV------GNFPG  246 (435)
T ss_pred             eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEEe------ecCCC
Confidence            368888876532        3445667788999999999854 44443   346899999988866433      34455


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCC
Q 016522          208 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG  282 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~  282 (388)
                      .+....|+|++..++++.+.+|.  |.+||+..+  ....+..+........|+|||+.|+..+. +|  .|.++|+..+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            67788999944444556666665  666787654  34556666666778999999998887763 33  6888898765


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      ...... ...     ..+....|+|+|+.|+....+   ..|.+||+..+.. ..+.     ....+....|+|||+.|+
T Consensus       325 ~~~~lt-~~~-----~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-----~~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        325 NPRRIS-FGG-----GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-----SGFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             CeEEee-cCC-----CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-----CCCCCCCCeECCCCCEEE
Confidence            543322 211     125667899999998876643   2688888765543 2331     122467889999999887


Q ss_pred             EccC
Q 016522          360 TGSW  363 (388)
Q Consensus       360 s~~~  363 (388)
                      ..+.
T Consensus       393 ~~~~  396 (435)
T PRK05137        393 FFRQ  396 (435)
T ss_pred             EEEc
Confidence            6554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.9e-14  Score=127.26  Aligned_cols=231  Identities=16%  Similarity=0.138  Sum_probs=146.6

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-  126 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-  126 (388)
                      .++.. ....+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+...+.+|+|+|+.++. 
T Consensus       188 i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        188 VADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALT  265 (433)
T ss_pred             EECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEE
Confidence            34443 33445566778889999999999999887643   469999998876543 3333344567899999987764 


Q ss_pred             eeCCC--cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccc
Q 016522          127 GGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       127 ~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~  202 (388)
                      .+.+|  .|.+||+.++.        ...+..+.......+|+|+|..+++++..+|.  |.++|+.+++.....     
T Consensus       266 ~s~~g~~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-----  332 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-----  332 (433)
T ss_pred             EeCCCCceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-----
Confidence            44555  58999987643        23344454555678999998554445445554  667777666543332     


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEE
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRL  276 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i  276 (388)
                       .........+|+| +++.++..+.++   .|.+||+..+ .. ..+. +........|+|||++++..+.+   +.|.+
T Consensus       333 -~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g-~~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        333 -FQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTG-SV-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             -cCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCC-Ce-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence             1223345689999 666666554332   6899998765 32 2333 22344567999999988876653   35888


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      +++.. .....+....+     .+...+|+|
T Consensus       408 ~~~~g-~~~~~l~~~~g-----~~~~p~wsp  432 (433)
T PRK04922        408 VSTDG-RVRQRLVSADG-----EVREPAWSP  432 (433)
T ss_pred             EECCC-CceEEcccCCC-----CCCCCccCC
Confidence            88754 33333322111     245566665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=2.1e-12  Score=110.66  Aligned_cols=273  Identities=14%  Similarity=0.170  Sum_probs=172.3

Q ss_pred             cCCeeEEEeCCCCCeEEEEeC----CCcEEEEECCCC--C--eeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEe
Q 016522           67 AGKVYSLDWTSERNRIVSASQ----DGRLIVWNALTS--Q--KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN  137 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~  137 (388)
                      ......++++|++++|.++..    +|.|..|++...  +  .+............++++|++++|+++.. +|.+.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345677999999999988876    578999988664  2  33344444556778999999999999875 89999999


Q ss_pred             CCCCCCCCCCCcee-EEe----------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc--eEEEeecccccC
Q 016522          138 LNSPTDKDGNLPVS-RML----------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSG  204 (388)
Q Consensus       138 ~~~~~~~~~~~~~~-~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~  204 (388)
                      +.....    .... ...          ........++.++|+++.++++.-....|.+|++....  ...  .......
T Consensus       116 l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~--~~~~~~~  189 (345)
T PF10282_consen  116 LDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP--VDSIKVP  189 (345)
T ss_dssp             ECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--EEEEECS
T ss_pred             ccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--eeccccc
Confidence            987321    1111 111          01234467899999986656655556689999997765  222  1111245


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce---EEEecc------cCCeeEEEEccCCCEEEEee-CCCcE
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFHGH------EGDVNTVKFFPDGNRFGTGS-DDGTC  274 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i  274 (388)
                      .......+.|+|+...++++...++.|.+|++......+   ......      ......|.++|||++|+++. ..+.|
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            567788999999444555666678899999988322222   222211      12467899999999988765 56789


Q ss_pred             EEEECCC--CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEc--ccceEEeeccCCCCCcCCCeeEE
Q 016522          275 RLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       275 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      .+|++..  +.....-....   .......++++|+|++|+++.. ++.|.+|++  .++.....-.   ...-....||
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~---~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~---~~~~~~p~ci  343 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPT---GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS---SVPIPSPVCI  343 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEE---SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---EEESSSEEEE
T ss_pred             EEEEEecCCCceEEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc---cccCCCCEEE
Confidence            9999942  33222111111   1223789999999999998875 558999876  4565544321   1123455666


Q ss_pred             EE
Q 016522          350 GL  351 (388)
Q Consensus       350 ~~  351 (388)
                      .|
T Consensus       344 ~f  345 (345)
T PF10282_consen  344 VF  345 (345)
T ss_dssp             EE
T ss_pred             eC
Confidence            65

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=6.2e-14  Score=124.38  Aligned_cols=232  Identities=16%  Similarity=0.170  Sum_probs=149.6

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.++|... .....+..+...+...+|+|+|++|+.+..+   ..|++|++.++.        ...+..+.+.+.+++|
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEE
Confidence            577888753 4445555566678899999999999987654   479999998753        1223334556677899


Q ss_pred             EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCC--ceEEEECCCCCc
Q 016522          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDS--TARLWDTRVASR  241 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~  241 (388)
                      +|++..++++.+.++  .|.+||+.++......      .+........|+| +++.++.. ..++  .|.++|+...  
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~--  312 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG--  312 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC--
Confidence            999866656665554  5888999877544332      3333445678998 66655544 4444  5777777654  


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                      ....+..+...+....|+|++++++.++.++   .|.+||+.++.... +... .     ......|+|+|++|+..+.+
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~-----~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-G-----LDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-C-----CCCCceECCCCCEEEEEEeC
Confidence            2344444556677889999999999888776   79999988754322 2111 1     12345799999988887765


Q ss_pred             C---cEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522          319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (388)
                      +   .+++.+.. +.....+    ..+.+.+..++|
T Consensus       386 ~~~~~l~~~~~~-g~~~~~~----~~~~g~~~~~~w  416 (417)
T TIGR02800       386 GGRGVLGLVSTD-GRFRARL----PLGNGDVREPAW  416 (417)
T ss_pred             CCcEEEEEEECC-CceeeEC----CCCCCCcCCCCC
Confidence            4   35555543 4444444    223444554444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.7e-14  Score=121.74  Aligned_cols=243  Identities=17%  Similarity=0.197  Sum_probs=171.6

Q ss_pred             CccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          109 CAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      ...-+.|..+|||+|++ +|...-.|++||+..         +...+..|. ..+..+....+.-..++.-..|.+|-+.
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            34578899999999865 566788999999987         344444443 3333333333322335556677777665


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      ..-..-...        .-+..-..++++..+..++++|+ ...|+-+++..+ +.+..+....+.++++..++...+|+
T Consensus       122 ak~G~hy~~--------RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  122 AKYGRHYRT--------RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             hhcCeeeee--------ecCcCCccccccCCCccEEEeec-CcceEEEEcccc-ccccccccccccceeeeecCccceEE
Confidence            432211111        12233456667665556655544 567888899888 78888887788999999999999999


Q ss_pred             EeeCCCcEEEEECCCCceeeEeeeccC------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC
Q 016522          267 TGSDDGTCRLFDIRTGHQLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  340 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (388)
                      +|+.+|.|..||.++...+..+.....      .+....|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.   .
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h  268 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---H  268 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---c
Confidence            999999999999998776666544322      2233459999999999999999999999999999998887643   3


Q ss_pred             CcCCCeeEEEECCC--CCeEEEccCCCeEEEeccce
Q 016522          341 SHEGRITCLGLSAD--GSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       341 ~~~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .-.-+|..+.|.+.  +..|++. ....++||+...
T Consensus       269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT  303 (703)
T ss_pred             CCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence            44568999999775  4456555 468899998654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.5e-14  Score=125.17  Aligned_cols=207  Identities=19%  Similarity=0.208  Sum_probs=133.8

Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-CC--CeEEEEecCCCceEEEeecccccCCcc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD--QTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      ..|.++|.....        ...+..+...+.+.+|+|+|.. ++..+ .+  ..|.+||+.+++.....      ....
T Consensus       176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g  240 (427)
T PRK02889        176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRVVA------NFKG  240 (427)
T ss_pred             cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEEee------cCCC
Confidence            356666664321        2334466778899999999854 54443 22  45999999988765432      2334


Q ss_pred             CeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEEC--CCCc
Q 016522          208 DVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDI--RTGH  283 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~  283 (388)
                      ......|+| +++.+ ++.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+  .++.
T Consensus       241 ~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        241 SNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            566889999 55544 567778877777654332345556555556677899999998876654 456666654  4443


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      ..... .. .    .......|+|+|++|+..+.++   .|++||+.+++.....    ..  .......|+|||+.|+.
T Consensus       320 ~~~lt-~~-g----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt----~~--~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        320 AQRVT-FT-G----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT----DT--TRDESPSFAPNGRYILY  387 (427)
T ss_pred             eEEEe-cC-C----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc----CC--CCccCceECCCCCEEEE
Confidence            32222 11 1    1234578999999998776654   5999999887654322    11  23467799999998888


Q ss_pred             ccCCC
Q 016522          361 GSWDT  365 (388)
Q Consensus       361 ~~~dg  365 (388)
                      ++.++
T Consensus       388 ~~~~~  392 (427)
T PRK02889        388 ATQQG  392 (427)
T ss_pred             EEecC
Confidence            77544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=2.4e-14  Score=111.18  Aligned_cols=157  Identities=17%  Similarity=0.327  Sum_probs=108.6

Q ss_pred             EEEEEEeCCCceEEEeeC---------CCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEE--eeCCC
Q 016522          162 SCCQYVPDEDTHLITSSG---------DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS--GSCDS  229 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg  229 (388)
                      ..+.|+++|+.+++....         -|...+|.++.. .....+.    ....++|.+++|+| +++.|++  |..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~----l~~~~~I~~~~WsP-~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE----LKKEGPIHDVAWSP-NGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee----ccCCCceEEEEECc-CCCEEEEEEccCCc
Confidence            357888888665555441         133455555322 2222221    23455799999999 5555433  45678


Q ss_pred             ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .|.+||++ . ..+..+.  ...++.+.|+|+|++|++++.   .|.|.+||.++.+.+.....       ..++.++|+
T Consensus        84 ~v~lyd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-------~~~t~~~Ws  152 (194)
T PF08662_consen   84 KVTLYDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-------SDATDVEWS  152 (194)
T ss_pred             ccEEEcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-------CcEEEEEEc
Confidence            99999997 2 5555553  567889999999999999874   36799999998777765432       137899999


Q ss_pred             CCCCEEEEEec------CCcEEEEEcccceEEeec
Q 016522          307 ISGRLLFAGYS------NGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       307 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  335 (388)
                      |+|++++++..      |+.++||+.. |+.+...
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99999998865      6789999984 5555543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=4.7e-14  Score=124.17  Aligned_cols=222  Identities=15%  Similarity=0.138  Sum_probs=141.5

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEe---CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCC--cEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSAS---QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDS--VCS  134 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~  134 (388)
                      +.+..+...+.+.+|+|||+.|+..+   .+..+.+|++.+++..... .....+...+|+|||+.|+.. +.+|  .|.
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            34455677899999999999888654   2357999999887644322 222335578999999988865 4444  588


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +||+.++.       . ..+..+...+....|+|+|..++++...++.  |.++|+.++......      .........
T Consensus       271 ~~d~~tg~-------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt------~~~~~~~~~  336 (429)
T PRK03629        271 VMDLASGQ-------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT------WEGSQNQDA  336 (429)
T ss_pred             EEECCCCC-------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee------cCCCCccCE
Confidence            89987643       2 2333344567789999998554444444444  555577666543322      223345678


Q ss_pred             EeeCCCCcEEEEeeC-C--CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc---EEEEECCCCceee
Q 016522          213 SISGSNSRMFVSGSC-D--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT---CRLFDIRTGHQLQ  286 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~  286 (388)
                      .|+| +++.++..+. +  ..|.+||+.++ . ...+.. ........|+|||++|+..+.++.   +.++++. +....
T Consensus       337 ~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~  411 (429)
T PRK03629        337 DVSS-DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA  411 (429)
T ss_pred             EECC-CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeE
Confidence            8999 6666665443 3  35788898765 2 333332 123456789999999999887764   6777774 44444


Q ss_pred             EeeeccCCCCCCCeEEEEecC
Q 016522          287 VYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      .+....     ..+...+|+|
T Consensus       412 ~l~~~~-----~~~~~p~Wsp  427 (429)
T PRK03629        412 RLPATD-----GQVKFPAWSP  427 (429)
T ss_pred             ECccCC-----CCcCCcccCC
Confidence            443222     2366777776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.1e-13  Score=122.38  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=144.7

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C--cEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .+.++|..... ...+......+....|+|||+.|+..+.+ +  .|.+||+.++..        ..+....+......|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeE
Confidence            56667765443 34455566678899999999998876543 2  588888876431        112222233346799


Q ss_pred             EeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCc--eEEEECCCCCc
Q 016522          167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDST--ARLWDTRVASR  241 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~--i~i~d~~~~~~  241 (388)
                      +|+|..++++.+.+|.  |.++|+.+++....      ..+........|+| +++.+ ++...+|.  |.++|+..+ .
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------t~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~  341 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------TRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K  341 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence            9998766666777775  77889887765433      23444567789999 55554 44444454  555566554 2


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                       ...+..........+|+|||++|+..+.+ +  .|.++|+.++.... +.... .     .....|+|+|++|+..+.+
T Consensus       342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~-----d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-L-----DESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence             23332222334457999999998876653 3  46667887765432 21111 1     1234799999987766543


Q ss_pred             -C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                       |  .+++++. ++.....+    ..+.+.+...+|+|
T Consensus       414 ~g~~~l~~~~~-~G~~~~~l----~~~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSI-DGRFKARL----PAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEEC-CCCceEEC----cCCCCCcCCCccCC
Confidence             3  3777786 45555555    34556677788886

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=9.1e-15  Score=122.30  Aligned_cols=235  Identities=17%  Similarity=0.224  Sum_probs=152.1

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE-----eCCCceEEEeeCCCeEEEE
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-----PDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~v~i~  186 (388)
                      ++...++-.|++|+..- ...+.+|+........  .++.+..... ...+|-+|+     +.+ --++.|-.-|.|.+.
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~--~pi~k~~y~g-t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLS--KPIDKREYKG-TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI  200 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhc--cchhhhcccC-CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence            44555555667666542 3468899888633211  1122222211 222333442     233 347788888999999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE--ccCCCE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNR  264 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~  264 (388)
                      |....+....+.... ......++++.|-|.+...++++-.+|.+++||....           ...+...|  .+++..
T Consensus       201 dp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~  268 (636)
T KOG2394|consen  201 DPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQ  268 (636)
T ss_pred             cchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCe
Confidence            887643333332221 2345789999999988899999999999999996321           11122222  235555


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (388)
                      +.....-+.      .+..++..+.....     .|...+|+|||++||+.+.||.++|||..+.+.+..+    +.--+
T Consensus       269 f~i~t~ksk------~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m----kSYFG  333 (636)
T KOG2394|consen  269 FAILTSKSK------KTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM----KSYFG  333 (636)
T ss_pred             eEEeeeecc------ccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH----Hhhcc
Confidence            554332111      11233333333222     4899999999999999999999999999998887766    45557


Q ss_pred             CeeEEEECCCCCeEEEccCCCeEEEeccceeeee
Q 016522          345 RITCLGLSADGSALCTGSWDTNLKVSLHYYIFVL  378 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~  378 (388)
                      ...|++|+|||++|++||.|..|.||........
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            8999999999999999999999999997654433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.65  E-value=1.2e-13  Score=107.25  Aligned_cols=270  Identities=16%  Similarity=0.121  Sum_probs=178.8

Q ss_pred             CCCcEEEEECCCCCeee---EeeeCCccEEEEEECC---CCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           87 QDGRLIVWNALTSQKTH---AIKLPCAWVMTCAFSP---TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        87 ~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      .-|.+.+|++...+...   ........+..+.|..   +|. .++-+...|.|.++........    .....+....-
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----VHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee----eeecccchhhh
Confidence            34678899887665443   1123344577777753   455 5666778899999987753311    01111111111


Q ss_pred             ---ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE--EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522          160 ---YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (388)
Q Consensus       160 ---~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~  234 (388)
                         ...++.|++.+ ..++++..+|.+.+-+........  .+     ..|.-++....|+..+.+++.+|+.|+.+..|
T Consensus       120 ~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~w-----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~  193 (339)
T KOG0280|consen  120 SVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTW-----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCW  193 (339)
T ss_pred             hheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccc-----cccceeeeeeecccCCCceEEecCCCceEEEE
Confidence               24567888876 458888889999866655443333  44     78999999999998888999999999999999


Q ss_pred             ECCCCCcceEE-EecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCC-
Q 016522          235 DTRVASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGR-  310 (388)
Q Consensus       235 d~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  310 (388)
                      |+|.++..+.. .+-|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++..-.      ..+.|..+..+|.-. 
T Consensus       194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~------v~GGVWRi~~~p~~~~  267 (339)
T KOG0280|consen  194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK------VGGGVWRIKHHPEIFH  267 (339)
T ss_pred             EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc------cccceEEEEecchhhh
Confidence            99966444433 567889999998887 788999999999999999995 44443322      224699999998643 


Q ss_pred             -EEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEE-Eeccc
Q 016522          311 -LLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLK-VSLHY  373 (388)
Q Consensus       311 -~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~-iw~~~  373 (388)
                       .|+++-.+ -.+|-+.+.+... .......+.|.+-+..-.|.....+|+|++ .|..++ +|.+-
T Consensus       268 ~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  268 RLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI  333 (339)
T ss_pred             HHHHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence             34444334 4566665543222 111111156777777777755556788865 477744 77653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=4.2e-13  Score=119.18  Aligned_cols=235  Identities=13%  Similarity=0.112  Sum_probs=146.9

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.++|...+. ...+..+...+....|+|+|+.|+..+.+   ..|.+|++.++.        ...+....+.+....|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeEE
Confidence            47777876444 45555566778999999999999876643   368899998754        1222223344556899


Q ss_pred             EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcc
Q 016522          167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRA  242 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  242 (388)
                      +|+|..++++...+|  .|.+||+.++.....      ..+........|+|++..++++...+|  .|+++|+..+ . 
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-  322 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-  322 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-
Confidence            999866555665555  688889988765432      234445567789994444444544444  4666676655 2 


Q ss_pred             eEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-
Q 016522          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-  318 (388)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  318 (388)
                      ...+...........|+|+|+.|+..+.+ +  .|.+||+.++...... .. ..     .....|+|+|+.++..+.+ 
T Consensus       323 ~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~-~~-----~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        323 AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DT-SL-----DESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CC-CC-----CCCceECCCCCEEEEEEecC
Confidence            22222222233457899999999877643 3  5888999887643322 11 11     1245799999988776654 


Q ss_pred             C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       319 g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      |  .++++++... ....+    ..+.+.+...+|+|
T Consensus       396 g~~~l~~~~~~g~-~~~~l----~~~~g~~~~p~ws~  427 (430)
T PRK00178        396 GRGVLMLVSINGR-VRLPL----PTAQGEVREPSWSP  427 (430)
T ss_pred             CceEEEEEECCCC-ceEEC----cCCCCCcCCCccCC
Confidence            2  4777777433 33334    33445667777776

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2.7e-13  Score=114.15  Aligned_cols=295  Identities=15%  Similarity=0.138  Sum_probs=188.5

Q ss_pred             CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC-----------CCcEEEEECCCCCeeeEeeeCCc--c-EEE
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-----------DGRLIVWNALTSQKTHAIKLPCA--W-VMT  114 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~--~-v~~  114 (388)
                      +..|.-.....++.|. |.+ |.-+.|||..+||+|=+.           ...++|||+.+|.....+....+  . -.-
T Consensus       233 I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~  310 (698)
T KOG2314|consen  233 IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI  310 (698)
T ss_pred             eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce
Confidence            4446666666666665 554 899999999999998652           24799999999999888876332  2 234


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----CCCeEEEEecC
Q 016522          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDIT  189 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~  189 (388)
                      ..||.|++++|.-.. ..|.||+..+-.       +...-.-.-..|....|+|.+ ++|+-=.     .-..+.+..+.
T Consensus       311 frWS~DdKy~Arm~~-~sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evP  381 (698)
T KOG2314|consen  311 FRWSHDDKYFARMTG-NSISIYETPSFM-------LLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVP  381 (698)
T ss_pred             EEeccCCceeEEecc-ceEEEEecCcee-------eecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecC
Confidence            679999999998776 468899876521       111112223567788999975 5554221     12345666666


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe----------eCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG----------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      +++.++..     .-+.-.=..+.|-. ++.+|+.-          +.-..+.|+.++...-++.... -...|...+|-
T Consensus       382 s~~~iRt~-----nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWE  454 (698)
T KOG2314|consen  382 SKREIRTK-----NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWE  454 (698)
T ss_pred             ccceeeec-----cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeec
Confidence            66655554     22222223344544 56666542          2223567777776655555554 45678899999


Q ss_pred             cCCCEEEEeeC---CCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE---ecCCcEEEEEcccceEE
Q 016522          260 PDGNRFGTGSD---DGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       260 ~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~  332 (388)
                      |.|+.+++-+.   ..++.+|.+.+ ..........    .....+.+.|+|.|++++++   +..|.+.++|+......
T Consensus       455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k  530 (698)
T KOG2314|consen  455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK  530 (698)
T ss_pred             cCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh
Confidence            99998877653   35688888874 2211111111    11237889999999988775   45789999998742222


Q ss_pred             eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      ..-    .......+.+.|.|.|+|++|++.-...++
T Consensus       531 ~~~----~~eh~~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  531 DTA----SPEHFAATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hcc----CccccccccceECCCCCEEEEeeehhhhcc
Confidence            211    122235678899999999999986554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.2e-13  Score=119.78  Aligned_cols=280  Identities=14%  Similarity=0.142  Sum_probs=199.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---------------eeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---------------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      .....|++|+....++|+|+.||.+++-.+.+..               .-+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4467899999999999999999999999775421               2356678999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      .|.||-+-.+.     +.....-...++.|.+++|+.+| ..++....||.|.+=.+........      .-.......
T Consensus        94 lIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK------eLkg~~l~h  161 (1189)
T KOG2041|consen   94 LIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK------ELKGQLLAH  161 (1189)
T ss_pred             eEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecch------hcchheccc
Confidence            99999987754     11111223346778999999998 5688889999888776654322111      111223446


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCC------cceEE----EecccCCeeEEEEc--------cCCCEEEEeeCCCc
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRT----FHGHEGDVNTVKFF--------PDGNRFGTGSDDGT  273 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~  273 (388)
                      +.|++ +...++.+-.+|.+.+||....-      .+...    +......|..+.|.        |+...|+++-..|.
T Consensus       162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            78998 77777778889999999976331      11111    11122235566664        47778999999999


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---------cEEEEEcccceEEeeccCCCCCcCC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSHEG  344 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~  344 (388)
                      +.|..-.+......+...      -.+....|+++|.+|++++.+.         .|.+|. .-|+.+.++    +....
T Consensus       241 ~QiMR~eND~~Pvv~dtg------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl----kvpg~  309 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDTG------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL----KVPGS  309 (1189)
T ss_pred             ehhhhhcCCCCCeEEecc------cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE----ecCCc
Confidence            988765554444444332      2388899999999999987643         466665 356677777    56778


Q ss_pred             CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          345 RITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .|++++|-..|-.++.+ .|+.|.+=+
T Consensus       310 ~It~lsWEg~gLriA~A-vdsfiyfan  335 (1189)
T KOG2041|consen  310 CITGLSWEGTGLRIAIA-VDSFIYFAN  335 (1189)
T ss_pred             eeeeeEEcCCceEEEEE-ecceEEEEe
Confidence            89999998888777766 477777654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=5.5e-14  Score=126.55  Aligned_cols=270  Identities=14%  Similarity=0.163  Sum_probs=184.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECC------CCCEEEEeeCCCcEEEEeCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSP------TGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~------~~~~l~~~~~dg~i~vw~~~  139 (388)
                      -+++++.++-.  ++|..|.. -.|.+||+..+..+..+.... ..+.    .+      .+.+++++..-+.+..=+..
T Consensus         7 ~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             cccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh
Confidence            34555555544  46666654 369999998887655443211 1111    11      23344444443333332222


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE-----EEEe
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-----SVSI  214 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~-----~~~~  214 (388)
                      .        .....   -.+.|....+.-. +..++.++.+..+.+||...+......      .+....+     -+-.
T Consensus        80 ~--------~~~~~---~s~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i------~~~er~~l~~~~~~g~  141 (967)
T KOG0974|consen   80 N--------QIIER---FSDWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKI------QSDERCTLYSSLIIGD  141 (967)
T ss_pred             h--------hhhhh---ccccccccchhhh-cceEEEEEcCceEEEEecccCceehhc------CCCceEEEEeEEEEec
Confidence            1        11111   2233333344443 356888889999999999887666554      2222211     1122


Q ss_pred             eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      ++ +.-++++|+.-+.|.+|+......+. .+.+|.+.|.++.|+.||.++++.|.|.++++|++.+.+...    ...-
T Consensus       142 s~-~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~f  215 (967)
T KOG0974|consen  142 SA-EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGF  215 (967)
T ss_pred             cC-cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccc
Confidence            33 66789999999999999998553444 688999999999999999999999999999999999987766    2234


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .|...+..++|.|+  .+++++.|-+.++|+.+ ++.+..+    ..|. ..|..++..++...++|++.||.+++|+..
T Consensus       216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             cccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            56668999999998  99999999999999754 3444444    4454 579999999999999999999999999864


Q ss_pred             e
Q 016522          374 Y  374 (388)
Q Consensus       374 ~  374 (388)
                      .
T Consensus       289 ~  289 (967)
T KOG0974|consen  289 G  289 (967)
T ss_pred             c
Confidence            3

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.62  E-value=1.7e-13  Score=106.40  Aligned_cols=248  Identities=14%  Similarity=0.152  Sum_probs=166.1

Q ss_pred             cCCeeEEEeCC---CCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCC------ccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           67 AGKVYSLDWTS---ERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        67 ~~~v~~~~~~~---~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      +..+..+.|..   +|. .++-+..+|.|.++..........++.-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34566777754   444 56677788999999765544444443211      124578899999999999999999955


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      +....     .+...+..+.|.-+.....|+...++++.+|+.|+.+..||++... .+..-    ...|...|.+|.-+
T Consensus       149 ~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss  219 (339)
T KOG0280|consen  149 YETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSS  219 (339)
T ss_pred             eccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecC
Confidence            54432     2223447889999999999999888999999999999999999332 22221    15788999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      |+.+.++++|+.|-.|++||.|+..+++..-. -.+.|..+.++|.  +..|+++-..| .+|-+...+...........
T Consensus       220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~  297 (339)
T KOG0280|consen  220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSD  297 (339)
T ss_pred             CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecc
Confidence            98999999999999999999997767765544 3478999999993  33445544444 56666655433211111111


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEe-cCCcEE-EEE
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGY-SNGDCY-VWD  325 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~-i~d  325 (388)
                      ..+.+.+..-.|.....++++++ .|..++ +|-
T Consensus       298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccccceeeccccccccceeeeeeccccceeeeee
Confidence            22222344444433334677754 344433 554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=8.5e-13  Score=117.13  Aligned_cols=206  Identities=17%  Similarity=0.135  Sum_probs=134.5

Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---CeEEEEecCCCceEEEeecccccCCccC
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .|.++|.....        ...+..+...+....|+|+|. .++.+..+   ..|++||+.++......      .+...
T Consensus       171 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~  235 (417)
T TIGR02800       171 ELQVADYDGAN--------PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGM  235 (417)
T ss_pred             eEEEEcCCCCC--------CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCC
Confidence            57777765422        234445666788899999985 45544432   47999999988654432      34455


Q ss_pred             eEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCc
Q 016522          209 VLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH  283 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~  283 (388)
                      +.+++|+|++..++++.+.++  .|++||+.++  ....+..+........|+|+++.|+..+. ++  .|.++|+.+++
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            667899994334445555554  5888888754  33444445555567899999998876654 33  58888887665


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      ..... ..     ........|+|+|++++.++.++   .|.+||+.++......     . ........|+|||++|+.
T Consensus       314 ~~~l~-~~-----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-----~-~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       314 VRRLT-FR-----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-----D-TGLDESPSFAPNGRMILY  381 (417)
T ss_pred             EEEee-cC-----CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-----C-CCCCCCceECCCCCEEEE
Confidence            43222 11     12356788999999998887765   7899998875543221     1 122345689999998888


Q ss_pred             ccCCCe
Q 016522          361 GSWDTN  366 (388)
Q Consensus       361 ~~~dg~  366 (388)
                      ++.++.
T Consensus       382 ~~~~~~  387 (417)
T TIGR02800       382 ATTRGG  387 (417)
T ss_pred             EEeCCC
Confidence            776553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.5e-12  Score=111.95  Aligned_cols=240  Identities=13%  Similarity=0.099  Sum_probs=144.4

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE---EEeeCCC--cEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV---ACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC  164 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  164 (388)
                      .|.+.|...+.. ..+.........-+|+|||+.+   ++...+|  .|.+.++.++.        ...+....+.....
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------~~~lt~~~g~~~~p  236 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------GKKILALQGNQLMP  236 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------ceEeecCCCCccce
Confidence            566777654443 3444455556778999999752   2444443  57777777643        12222233444567


Q ss_pred             EEEeCCCceEEEeeCCC----eEEEEecCCC---ceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEE-
Q 016522          165 QYVPDEDTHLITSSGDQ----TCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWD-  235 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg----~v~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d-  235 (388)
                      .|+|||..++++...+|    .+..|++..+   ......     ..........+|+| +++.|+ +...+|...+|. 
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----NEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----cCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence            99999866555554333    3445776653   222222     12223346779999 666554 444567555554 


Q ss_pred             -CCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522          236 -TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       236 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (388)
                       +.........+..+...+....|+|||+.|+..+.+   ..|.+||+.+++....... .     ..+....|+|||+.
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~-----~~~~~p~wSpDG~~  384 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P-----ENKESPSWAIDSLH  384 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C-----CCccceEECCCCCE
Confidence             432223344455455567789999999998876543   3699999988866433211 1     12567899999998


Q ss_pred             EEEEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      |+....   ...|+++|+..++.....     ...+.+...+|+|-.
T Consensus       385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        385 LVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecCCC
Confidence            775433   346888998877654433     234456677888743

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.60  E-value=3.1e-13  Score=114.69  Aligned_cols=191  Identities=15%  Similarity=0.169  Sum_probs=153.4

Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee------C-------------CCCcEEEEeeCCCce
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------G-------------SNSRMFVSGSCDSTA  231 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~dg~i  231 (388)
                      ..+++....||.+++||...++....+.+..  ...+..++..|.      |             .+...++-|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4679999999999999999998887775432  233444555553      1             244678889999999


Q ss_pred             EEEECCCCCcceEEE--ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          232 RLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       232 ~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      .+|+...+ +....+  ..|.+.|+++.++.+-..|.+++.|+.+..|+.........+.....     .+.+++++|||
T Consensus        83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-----~~~sl~is~D~  156 (541)
T KOG4547|consen   83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-----LVSSLCISPDG  156 (541)
T ss_pred             EEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-----ccceEEEcCCC
Confidence            99999877 444444  36899999999999889999999999999999998888877765443     38999999999


Q ss_pred             CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC-----CCeEE-EccCCCeEEEecccee
Q 016522          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALC-TGSWDTNLKVSLHYYI  375 (388)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-s~~~dg~v~iw~~~~~  375 (388)
                      ..+++++  +.|.+||+++++.+..+    .+|.++|.+++|..+     |.+++ ++..+..+.+|.....
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999886  57999999999999999    899999999999876     55554 4556777888987653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.60  E-value=7.8e-13  Score=112.30  Aligned_cols=191  Identities=15%  Similarity=0.216  Sum_probs=150.5

Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEE------CC--------------CCCEEEEeeCCCc
Q 016522           76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF------SP--------------TGQSVACGGLDSV  132 (388)
Q Consensus        76 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~dg~  132 (388)
                      .|...++|....||.+++||..+++....+...   .+..++..|      +|              +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            345679999999999999999888876665421   222333333      22              3356888899999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |.+|+...++     ......-..|.+.|.++.++.+- ..|.+++.|+.+..|+......++.+     ......+.++
T Consensus        82 v~~ys~~~g~-----it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~sl  150 (541)
T KOG4547|consen   82 VLLYSVAGGE-----ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVSSL  150 (541)
T ss_pred             EEEEEecCCe-----EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee-----ccCCCccceE
Confidence            9999998755     22333335799999999998874 68999999999999999999999988     6788889999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC-----CCEEEEee-CCCcEEEEECCC
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GNRFGTGS-DDGTCRLFDIRT  281 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~  281 (388)
                      +++| ++..+++++  +.|.+||+.+. +.+..+.+|.++|.+++|-.+     |.++.++. .+..+.+|-+..
T Consensus       151 ~is~-D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  151 CISP-DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEcC-CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999 688888876  78999999988 899999999999999999876     66666543 455577776654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.58  E-value=6.8e-12  Score=104.84  Aligned_cols=292  Identities=15%  Similarity=0.125  Sum_probs=193.5

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC---------------cEEEEECCCCCeeeEeeeCCcc--EE-
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG---------------RLIVWNALTSQKTHAIKLPCAW--VM-  113 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-  113 (388)
                      |.-+..-.+..+. | ..|..+.|+|.+++|.|=+..+               .+.+||..++..+..+.....+  .. 
T Consensus        58 ~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp  135 (561)
T COG5354          58 WGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWP  135 (561)
T ss_pred             ccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccc
Confidence            4333333344444 3 3599999999999999876443               4999999999999988876655  44 


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc-eEE-----EeeCCCeEEEEe
Q 016522          114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLI-----TSSGDQTCVLWD  187 (388)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~-----~~~~dg~v~i~d  187 (388)
                      -+.|+.+.++.|-. ....++|+++ ++.-...   ....+.  ...|....|+|.++. .|+     ..+.++.+++|.
T Consensus       136 ~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~---p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s  208 (561)
T COG5354         136 VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH---PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS  208 (561)
T ss_pred             eeeeeecchhhhhh-ccCeEEEEec-CCccccC---chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence            67888888877655 3457999997 3221111   111111  355777888886422 223     256788999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-----------CCCceEEEECCCCCcceEEEecccCCeeEE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-----------CDSTARLWDTRVASRAVRTFHGHEGDVNTV  256 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~  256 (388)
                      +..+..+..-     .-....-..+.|.+ .++++++-.           ....++++++...  .+.....-.++|...
T Consensus       209 Ip~~s~l~tk-----~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf  280 (561)
T COG5354         209 IPKNSVLVTK-----NLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDF  280 (561)
T ss_pred             ccCCCeeeee-----eeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc--ccceeccccccceee
Confidence            9877665554     22333345677887 555544311           1246888888743  343333567899999


Q ss_pred             EEccCCCEEEEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceE
Q 016522          257 KFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKV  331 (388)
Q Consensus       257 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~  331 (388)
                      +|.|.++.+++.+  .+-.+.++|++.. ....+ ...      .-..+.|+|.+++++.++-|   |.+.+||......
T Consensus       281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         281 TWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQ------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             eecccCCceeEEecccccceeecccccc-eEEec-CCc------ccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            9999888776554  7888999999865 32222 211      13668899999998886654   6899999877655


Q ss_pred             Ee-eccCCCCCcCCCeeEEEECCCCCeEEEcc------CCCeEEEeccce
Q 016522          332 VL-NLGSLQNSHEGRITCLGLSADGSALCTGS------WDTNLKVSLHYY  374 (388)
Q Consensus       332 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~v~iw~~~~  374 (388)
                      +. .+    .+  ...+-+.|+||++++.+..      .|..|+||+++.
T Consensus       353 ~~~~~----~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         353 VAGAF----NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEEe----ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            54 44    22  2345567999999988764      478899999764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=8.1e-11  Score=94.74  Aligned_cols=278  Identities=15%  Similarity=0.189  Sum_probs=180.9

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCC--CCee--eEeeeCCccEEEEEECCCCCEEEEeeC-CCcEE
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALT--SQKT--HAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCS  134 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  134 (388)
                      +-.+.+.++-|+|+|++++|.++..+   |.|..|.++.  |+..  ........+...++++++|++++++.. -|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            33467789999999999999887654   6787777664  4432  222334445588999999999999876 47899


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccc----------eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGY----------VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      ++.++...    .+........|.+.          +....+.|++..+++..-.--.|.+|++..+.....-....  .
T Consensus       115 v~p~~~dG----~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~  188 (346)
T COG2706         115 VYPLQADG----SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--K  188 (346)
T ss_pred             EEEcccCC----ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--C
Confidence            99997632    11122222334443          77889999975444444444579999999776554433222  4


Q ss_pred             CccCeEEEEeeCCCCcEEEE-eeCCCceEEEECCCCCcceEEEecc---------cCCeeEEEEccCCCEEEEeeC-CCc
Q 016522          205 HTADVLSVSISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPDGNRFGTGSD-DGT  273 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~-dg~  273 (388)
                      .......|.|+| ++++..+ .--+++|.+|........+..++.+         ......|..+|||++|.++.. ...
T Consensus       189 ~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds  267 (346)
T COG2706         189 PGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS  267 (346)
T ss_pred             CCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence            456678999999 6666554 5568999999988753344433322         234667899999999988753 347


Q ss_pred             EEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcc--cceEEeeccCCCCCcCCCeeEE
Q 016522          274 CRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTL--LAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       274 i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      |.+|.+..... +......  ..+....+...|+++|++|+++..++ .|.+|...  +|+......   ........|+
T Consensus       268 I~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~---~~~~p~Pvcv  342 (346)
T COG2706         268 IAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR---YAVVPEPVCV  342 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc---ccCCCCcEEE
Confidence            88888765432 3222221  11222368889999999999988765 68888654  455443331   2344455677


Q ss_pred             EEC
Q 016522          350 GLS  352 (388)
Q Consensus       350 ~~~  352 (388)
                      .|.
T Consensus       343 ~f~  345 (346)
T COG2706         343 KFL  345 (346)
T ss_pred             EEc
Confidence            664

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.58  E-value=1.5e-10  Score=96.86  Aligned_cols=264  Identities=11%  Similarity=0.044  Sum_probs=165.2

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC----------CCcEEEEeCCCCCCCCCCCceeEEeccc-
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGH-  157 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~-  157 (388)
                      ++|.+.|..+++.+..+.....+- .+ ++||++.++++..          +..|.+||..+.+       ....+... 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-------~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-------PIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-------EEeEEccCC
Confidence            899999999999998888665543 34 9999998888765          7899999999865       33333211 


Q ss_pred             ------ccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522          158 ------KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (388)
Q Consensus       158 ------~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  230 (388)
                            ......++++|+|..++++--. +..|.+.|+.+++.+..+..      .....-...+  +...+ +-+.||.
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~--e~~~~-~~~~Dg~  168 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTA--NDTFF-MHCRDGS  168 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEec--CCccE-EEeecCc
Confidence                  1223467899998544444424 89999999999999988732      2211222222  22222 2234555


Q ss_pred             eEEEECCCCCcce-E---EEecccCCe-eEEEEcc-CCCEEEEeeCCCcEEEEECCCCc-----eeeEeeeccC--CCCC
Q 016522          231 ARLWDTRVASRAV-R---TFHGHEGDV-NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-----QLQVYYQQHG--ENEI  297 (388)
Q Consensus       231 i~i~d~~~~~~~~-~---~~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~--~~~~  297 (388)
                      .....+....+.. .   .+.....++ ..-.|.+ +|+++++... |.|.+.|+....     ....+.....  .-..
T Consensus       169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence            5554443322211 1   111100000 0014455 8888877766 999999965432     2222111100  0011


Q ss_pred             CCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEcc-CCC
Q 016522          298 PHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDT  365 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg  365 (388)
                      ..+.-++++++++.+++...          .+.|.++|..+++.+..+.     -...+..++++||++ +|++.. .++
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDK  322 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCC
Confidence            22445999999998887431          2479999999999998873     345789999999999 887666 688


Q ss_pred             eEEEeccceee
Q 016522          366 NLKVSLHYYIF  376 (388)
Q Consensus       366 ~v~iw~~~~~~  376 (388)
                      .|.+.+.....
T Consensus       323 ~VsViD~~t~k  333 (352)
T TIGR02658       323 TLYIFDAETGK  333 (352)
T ss_pred             cEEEEECcCCe
Confidence            89999875433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.57  E-value=4.3e-11  Score=100.05  Aligned_cols=265  Identities=15%  Similarity=0.125  Sum_probs=167.2

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC----------CCcEEEEECCCCCeeeEeeeCCc------
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLPCA------  110 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~------  110 (388)
                      ......+....+.+.++..-..+-- + ++||++.|+++..          +..|.+||..+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            4555677777777777765444333 4 9999998877665          78999999999999988886433      


Q ss_pred             -cEEEEEECCCCCEEEEee-C-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          111 -WVMTCAFSPTGQSVACGG-L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       111 -~v~~~~~~~~~~~l~~~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                       ....++++|+|+++++.. . +..|.+.|+.+++       ......-.. ...-...++.   -...-+.||......
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-------vv~ei~vp~-~~~vy~t~e~---~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-------FVRMMDVPD-CYHIFPTAND---TFFMHCRDGSLAKVG  173 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-------EEEEEeCCC-CcEEEEecCC---ccEEEeecCceEEEE
Confidence             234789999999999876 3 6899999999865       333332211 1111111111   112223344333322


Q ss_pred             cCCCceEEEeecccccC-----CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC----cceEEEec-------ccC
Q 016522          188 ITTGLRTSVFGGEFQSG-----HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG-------HEG  251 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~-------~~~  251 (388)
                      +.+..............     ...+    .+.+.++.++.+... |.|.+.|+....    ..+..+..       ..+
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence            22211111110000001     0112    345546667766665 999999964331    22222211       233


Q ss_pred             CeeEEEEccCCCEEEEee----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCC
Q 016522          252 DVNTVKFFPDGNRFGTGS----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNG  319 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg  319 (388)
                      .+.-++++|+++.+++..          ..+.|.++|..+++.+..+....      .+..++++||++ +|++.. .++
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDK  322 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCC
Confidence            445599999999888843          22579999999999988876543      378999999999 777766 578


Q ss_pred             cEEEEEcccceEEeec
Q 016522          320 DCYVWDTLLAKVVLNL  335 (388)
Q Consensus       320 ~i~i~d~~~~~~~~~~  335 (388)
                      .|.++|..+++.+..+
T Consensus       323 ~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       323 TLYIFDAETGKELSSV  338 (352)
T ss_pred             cEEEEECcCCeEEeee
Confidence            8999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=4.4e-14  Score=133.65  Aligned_cols=203  Identities=17%  Similarity=0.251  Sum_probs=163.9

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      ++.|-..|.++.=+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+.+|+.+..+..||.+.+|.... 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            344556889999999889999999999999999999888877753 347899999999999999999999999999873 


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                             ......+.|+....+..|..   ..+++++   .++.+.+||..-........    ..|...++++++.| .
T Consensus      2283 -------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2283 -------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred             -------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcC-c
Confidence                   24566778988889999886   3466654   57889999976543333322    68999999999999 8


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      ..+|++|+.+|.|++||++.. +..+.++.         +. ...++++|+..|.++||++.....+..+...+
T Consensus      2348 ~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            899999999999999999976 55555543         34 56789999999999999999877766665443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=1.4e-13  Score=119.76  Aligned_cols=299  Identities=17%  Similarity=0.154  Sum_probs=206.5

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC-CeeeEeee-CCccEEEEEECCCC--CEEEEeeCC
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKL-PCAWVMTCAFSPTG--QSVACGGLD  130 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~d  130 (388)
                      +++...-.++ -.+.+.++..+|.|+-+|.++.-| +.+-|+... .+..-+.. ..-.|-.+.|+|..  .+-++....
T Consensus        13 ~tf~kslsl~-v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   13 PTFGKSLSLK-VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             CccCceeEEE-ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence            3333333343 356789999999999999999877 445566543 33222221 22246677887754  455555555


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCe
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADV  209 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i  209 (388)
                      ..-.+|++....    ...+...+.+|...|+.+.|+|.....+++++.|-.|..||+++... +..+     ..-....
T Consensus        91 qkaiiwnlA~ss----~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----~~w~s~a  161 (1081)
T KOG0309|consen   91 QKAIIWNLAKSS----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----SSWRSAA  161 (1081)
T ss_pred             chhhhhhhhcCC----ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----ecccccC
Confidence            666789987643    22356677899999999999999988999999999999999988643 3333     3445667


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      ..++|+-.+++.++ .+....|.+||.+.+..++..+++|...|+.+.|+. ....+.+++.||+|+.||..........
T Consensus       162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             ceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence            78899886666665 455778999999999999999999999999999976 4456889999999999998765433322


Q ss_pred             eeccCCCCCCCeEEEEecCCCCEEEEEec--CCcEEEEE---------cc-cceEEeeccCCCCCcCCCeeEEEECCCC-
Q 016522          289 YQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWD---------TL-LAKVVLNLGSLQNSHEGRITCLGLSADG-  355 (388)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  355 (388)
                      ..    ....++..-.+.|-|+-.++--.  +..+.+++         .. ..+++..+    .+|.+.|...-|-..+ 
T Consensus       241 ~v----tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  241 TV----TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             ec----cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHhhhhccc
Confidence            22    12234666777776652222111  11333333         22 23566666    7899988877775422 


Q ss_pred             ---------CeEEEccCCCeEEEeccc
Q 016522          356 ---------SALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       356 ---------~~l~s~~~dg~v~iw~~~  373 (388)
                               -.|+|-+.|..+++|-..
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeecc
Confidence                     279999999999999754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=5.6e-13  Score=120.21  Aligned_cols=195  Identities=18%  Similarity=0.232  Sum_probs=157.3

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      .|....+..+...++.++.+..+.+||...+.....+......    ..-+.++++.-++++|+.-+.|.+|+.....  
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--  166 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--  166 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence            3444555556678899999999999998877766655544322    2234457788899999999999999998322  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE-EeecccccCCccCeEEEEeeCCCCcEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-VFGGEFQSGHTADVLSVSISGSNSRMFV  223 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~  223 (388)
                           ....+.+|.+.|..+.|+.+| .++++.+.|.++++|++++.+... ..     .+|...+..+++.| +  .++
T Consensus       167 -----~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~-----fgHsaRvw~~~~~~-n--~i~  232 (967)
T KOG0974|consen  167 -----KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTG-----FGHSARVWACCFLP-N--RII  232 (967)
T ss_pred             -----CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCccc-----ccccceeEEEEecc-c--eeE
Confidence                 122688999999999999997 789999999999999999987766 22     69999999999998 4  899


Q ss_pred             EeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          224 SGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      +++.|-+.++|+...  ..+..+..|.. .+..++..++...+++++.|+.+++|++..
T Consensus       233 t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999997653  44557777765 588999999999999999999999999865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.4e-12  Score=112.93  Aligned_cols=222  Identities=15%  Similarity=0.158  Sum_probs=133.3

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCC-C--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-eeCCCc--EE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQD-G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSV--CS  134 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~  134 (388)
                      +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.... ..........+|+|+|+.|+. .+.+|.  |.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            3445566788899999999988876543 3  588889988765332 222233457899999998875 455664  77


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ++|+.++.        ...+..+........|+|++..+++++..++  .|.++|+.+++.....      .........
T Consensus       290 ~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt------~~g~~~~~~  355 (448)
T PRK04792        290 VVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT------FEGEQNLGG  355 (448)
T ss_pred             EEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe------cCCCCCcCe
Confidence            77776643        2333444455677899999866555554444  4666788777654332      111223456


Q ss_pred             EeeCCCCcEEEEee-CCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceee
Q 016522          213 SISGSNSRMFVSGS-CDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQ  286 (388)
Q Consensus       213 ~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~  286 (388)
                      +|+| ++++++..+ .++.  |.++|+..+ . ...+... .......|+|+|+.|+..+.+ |  .+.+++.. +....
T Consensus       356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~  430 (448)
T PRK04792        356 SITP-DGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA  430 (448)
T ss_pred             eECC-CCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence            8998 555555544 3453  455676655 2 2333322 122345899999988776543 3  36777764 44444


Q ss_pred             EeeeccCCCCCCCeEEEEecC
Q 016522          287 VYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      .+....+     .+...+|+|
T Consensus       431 ~l~~~~g-----~~~~p~Wsp  446 (448)
T PRK04792        431 RLPAGQG-----EVKSPAWSP  446 (448)
T ss_pred             ECcCCCC-----CcCCCccCC
Confidence            4432211     255666766

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.2e-11  Score=109.81  Aligned_cols=211  Identities=14%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCe
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      .|.++|.+...        ...+..+...+....|+|+|..++++...+  ..|.+||+.+++.....      ......
T Consensus       180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~g~~  245 (430)
T PRK00178        180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFEGLN  245 (430)
T ss_pred             EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCCCCc
Confidence            46777776532        233445667889999999985544444333  36999999888654432      223345


Q ss_pred             EEEEeeCCCCcEEE-EeeCCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCc
Q 016522          210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH  283 (388)
Q Consensus       210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~  283 (388)
                      ....|+| +++.++ +...+|  .|.+||+.++  ....+..+........|+|||+.|+..+. +|  .|.++++.+++
T Consensus       246 ~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        246 GAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CCeEECC-CCCEEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            5689999 555554 555555  5788888765  23445555556677899999998876653 33  57778887776


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      ....... .     .......|+|+|++|+..+.+ +  .|.+||+.+++... +.   ..  .......|+|||+.|+.
T Consensus       323 ~~~lt~~-~-----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt---~~--~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        323 AERVTFV-G-----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT---DT--SLDESPSVAPNGTMLIY  390 (430)
T ss_pred             EEEeecC-C-----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc---CC--CCCCCceECCCCCEEEE
Confidence            4333211 1     113456899999988877653 3  58889988876533 21   11  12224589999998877


Q ss_pred             ccC-CCeEEEec
Q 016522          361 GSW-DTNLKVSL  371 (388)
Q Consensus       361 ~~~-dg~v~iw~  371 (388)
                      .+. +|.-++|.
T Consensus       391 ~~~~~g~~~l~~  402 (430)
T PRK00178        391 ATRQQGRGVLML  402 (430)
T ss_pred             EEecCCceEEEE
Confidence            654 34444443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.53  E-value=2.3e-11  Score=101.79  Aligned_cols=298  Identities=12%  Similarity=0.077  Sum_probs=195.6

Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL  129 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  129 (388)
                      +-|++.....-..+..-.-++..++|||.|.+|++.... -|.+|.-.....+..+.  ...|..+.|+|.+++|.+=+.
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~   91 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSR   91 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeecc
Confidence            345555545545555566789999999999999988766 49999987777555444  344899999999999998654


Q ss_pred             CC---------------cEEEEeCCCCCCCCCCCceeEEecccccc--eE-EEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          130 DS---------------VCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VS-CCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       130 dg---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      .+               .+.+||+.++.       +...+.....+  .. -+.|+-+. .+++-. ....++|+++...
T Consensus        92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~-------iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~t~n  162 (561)
T COG5354          92 EPIIEPEIEISPFTSKNNVFVWDIASGM-------IVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEITDN  162 (561)
T ss_pred             CCccChhhccCCccccCceeEEeccCce-------eEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEecCCc
Confidence            33               48999998865       44444444333  33 56777764 444433 3346899997322


Q ss_pred             ceEEEeecccccCCccCeEEEEeeCC-CCcEEEE-----eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522          192 LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVS-----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      .....+    ..-....+....++|. +...|+.     .+..+++++|.+... ..+.+..-....-..+.|.+.|++|
T Consensus       163 ~~~~p~----~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~l  237 (561)
T COG5354         163 IEEHPF----KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYL  237 (561)
T ss_pred             cccCch----hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceE
Confidence            221111    1223467888889984 3444443     456789999998855 4444433333344568899998887


Q ss_pred             EEee-----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE--EecCCcEEEEEcccceEE
Q 016522          266 GTGS-----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       266 ~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~  332 (388)
                      ++--           ....+.++++.........      ...++|...+|.|.++.+++  |..+-.+.++|++.. ..
T Consensus       238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~  310 (561)
T COG5354         238 LVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR  310 (561)
T ss_pred             EEEEEEeeecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence            6532           1245778887633322221      12346999999999885554  457889999998766 44


Q ss_pred             eeccCCCCCcCCCeeEEEECCCCCeEEEccCC---CeEEEeccceeee
Q 016522          333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD---TNLKVSLHYYIFV  377 (388)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~  377 (388)
                      ..+      ....=+.+.|+|.+++++.++.|   |.+-+|++...+.
T Consensus       311 ~~~------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         311 FYF------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             Eec------CCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            433      33445677899999999987755   7788888765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.53  E-value=8.2e-12  Score=95.99  Aligned_cols=262  Identities=14%  Similarity=0.049  Sum_probs=176.1

Q ss_pred             eCCCcEEEEECCCCC-eeeEeeeCCccEEEEEECC-----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           86 SQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        86 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      +....|-+|+..+.. .+..+.      ..+.|-|     .-.+|+.|+..|...+|...+.+.      .......|..
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn  116 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------HLYQCDVSNN  116 (344)
T ss_pred             cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCccc------ceeeeccccc
Confidence            344567778776543 121111      3344444     446899999999999999987442      3344444554


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      .|+-+.-..+...-+..++.|.++++.+++.+......     ....-.+.++++++ ++.++++.+....|..|.+...
T Consensus       117 ~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~  190 (344)
T KOG4532|consen  117 DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDE  190 (344)
T ss_pred             chhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCc
Confidence            44333222222344777888888888888765443332     11113478899998 8899999999999999998866


Q ss_pred             CcceEE--EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEE
Q 016522          240 SRAVRT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAG  315 (388)
Q Consensus       240 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~  315 (388)
                      ...+..  .......-.+..|+.....+|++.+||++.|||++....+........+.+.+.+..+.|++.|.  +|+..
T Consensus       191 sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s  270 (344)
T KOG4532|consen  191 SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS  270 (344)
T ss_pred             cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe
Confidence            443332  22334455788999989999999999999999999877666665555566788899999998775  56655


Q ss_pred             ecCCcEEEEEcccceEEeeccCC---CCCcCC-CeeEEEECCCCCeEEEccCCC
Q 016522          316 YSNGDCYVWDTLLAKVVLNLGSL---QNSHEG-RITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      -.-+.+.+.|++++.....+...   ...|.. .|..-.|+.++.-+.+.+.+.
T Consensus       271 Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~  324 (344)
T KOG4532|consen  271 EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ  324 (344)
T ss_pred             cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence            55678999999987765544321   123333 378888888777666665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.53  E-value=5.7e-11  Score=103.77  Aligned_cols=290  Identities=14%  Similarity=0.074  Sum_probs=171.0

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC  126 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  126 (388)
                      .....+++.+.+.+..+.-..........  ++..++.++.+|.+..+|..+|+.+...............  .+..++.
T Consensus        75 g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v  150 (377)
T TIGR03300        75 GTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVV  150 (377)
T ss_pred             CeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEE
Confidence            33444555555554433322221112221  4567888889999999999999988776544321111111  3556777


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccce-----EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ++.+|.+..||..+++.       ..........+     .+.... +  ..++.+..+|.+..+|.++++.........
T Consensus       151 ~~~~g~l~a~d~~tG~~-------~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       151 RTNDGRLTALDAATGER-------LWTYSRVTPALTLRGSASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             ECCCCeEEEEEcCCCce-------eeEEccCCCceeecCCCCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            88899999999987652       22111111100     011111 2  357788889999999999998766542110


Q ss_pred             ccCCc--cC---e-EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          202 QSGHT--AD---V-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       202 ~~~~~--~~---i-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                      .....  ..   + .+..+   .+..+++++.+|.++.||..++ +.+-... . .......  ..+..+++++.+|.+.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSG-RVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVV  292 (377)
T ss_pred             CCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCC-cEEEeec-c-CCccCce--EeCCEEEEECCCCeEE
Confidence            00000  00   0 11112   2346777888999999999877 3333222 1 1111222  2567788888999999


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe-eEEEECCC
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-TCLGLSAD  354 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~  354 (388)
                      .+|..+++.+.........    .......  .+..+++++.+|.|+++|..+++.+..+    ..+...+ ....+. +
T Consensus       293 ~~d~~tG~~~W~~~~~~~~----~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~----~~~~~~~~~sp~~~-~  361 (377)
T TIGR03300       293 ALDRRSGSELWKNDELKYR----QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL----KTDGSGIASPPVVV-G  361 (377)
T ss_pred             EEECCCCcEEEccccccCC----ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE----EcCCCccccCCEEE-C
Confidence            9999999877554221111    1122222  3568899999999999999999999887    3333332 222232 3


Q ss_pred             CCeEEEccCCCeEEEe
Q 016522          355 GSALCTGSWDTNLKVS  370 (388)
Q Consensus       355 ~~~l~s~~~dg~v~iw  370 (388)
                       ..|+.++.||.|..+
T Consensus       362 -~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       362 -DGLLVQTRDGDLYAF  376 (377)
T ss_pred             -CEEEEEeCCceEEEe
Confidence             358889999999765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.52  E-value=9e-13  Score=100.68  Aligned_cols=207  Identities=16%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             ccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe------------eeEeeeCCccEEEEEECCCCCEEEEee
Q 016522           62 TLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------------THAIKLPCAWVMTCAFSPTGQSVACGG  128 (388)
Q Consensus        62 ~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (388)
                      ...+|.+ .|+.+.++.+ ..|+++..++.+......++.+            ...+..+.++-.+-+.+-.+..++++.
T Consensus        30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~  108 (319)
T KOG4714|consen   30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY  108 (319)
T ss_pred             hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence            3333443 3666776654 3677777776666555433322            222222222222222333467799999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----CCCeEEEEecCCCceEEEeeccccc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      .||.+.+++.+.-....     .+....|.+. .+.++...+ +.+.++.     .-+..++|+++..+....-     .
T Consensus       109 ~dg~~~v~s~~~~~~~~-----~~i~~~~~~~-as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-----~  176 (319)
T KOG4714|consen  109 ADGSLAVFSTDKDLALM-----SRIPSIHSGS-ASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPS-----K  176 (319)
T ss_pred             CCceEEEEechHHHhhh-----hhcccccccc-cccceeecc-cEEecCCcceEeeccceeeeccccccccccc-----c
Confidence            99999999987521110     1111112221 222333333 3333322     1223455555433222221     2


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      .....+.+++-+|...+++++|+.||.+.+||.++..-+...+..|+.++..+-|+| ++..|+++++||.+..||..+
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            223449999999988999999999999999999998778888899999999999999 788999999999999999765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=1.6e-13  Score=115.77  Aligned_cols=292  Identities=14%  Similarity=0.165  Sum_probs=195.3

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      +..+.||...|.+++--.+.+-+++++.|++|++|.+..       ..+..++..|..+|.++.|-.+.++++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            457889999999998888888999999999999998753       23566788899999999999998888765  789


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      |++||.--+.....-  ......+..+.|.|+.-.  ...+++.| +...+|+++|.+.......+......+....+.+
T Consensus       806 iHlWDPFigr~Laq~--~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQM--EDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ceeecccccchhHhh--hcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            999997654310000  000011122334333221  22344444 7888999999999887777654333455677889


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE-EECCCCceeeEeee
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYYQ  290 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~  290 (388)
                      +++.+ .++.++++-.+|.|.+.|.+++ ..+..+...+-....++ .|..+.|+....|.++.+ |..-++........
T Consensus       882 iaVa~-~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  882 IAVAD-KGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             EEecc-CcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            99998 8899999999999999999988 66666665554444444 355667787778888888 87766654433332


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cc---eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                      ...+.+.  .     -.-|.-+++......+.+|--. ..   ..+..+..  ....+..++++.-|-..-++.|...|.
T Consensus       959 ppepahf--l-----qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen  959 PPEPAHF--L-----QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred             CCcchhh--h-----hccCceeEEeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCCc
Confidence            2211110  1     1235566676666667777421 11   11111211  334567889998887777888888898


Q ss_pred             EEE
Q 016522          367 LKV  369 (388)
Q Consensus       367 v~i  369 (388)
                      |.+
T Consensus      1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred             eee
Confidence            875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=3.1e-13  Score=128.11  Aligned_cols=228  Identities=16%  Similarity=0.274  Sum_probs=167.0

Q ss_pred             eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522          106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL  185 (388)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  185 (388)
                      +.+-..|.++.-+|...+.++|+.||.+++|....+..      +...-......|+.+.|+.+| +.+..+..||.+.+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~------v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ------VVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe------EEEeeccCcchhhhhhhcccC-CceeeeccCCceee
Confidence            34445688888899999999999999999999987552      222222334889999999998 45888899999999


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      |... .+.....     ..|......+.|..   ..+++++   .++.+.+||...+...-..-..|.+.++++++-|..
T Consensus      2278 ~q~~-pk~~~s~-----qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSW-----QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             cccC-Ccceecc-----ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence            9987 3333333     67888888888864   4556543   468999999765533333337899999999999999


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      ++|++|+.+|.|++||++..+....+..              ++ ...++++|+..|.++||++.....+..+... ..|
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e-~ak 2412 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE-HAK 2412 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchh-hcc
Confidence            9999999999999999998777665532              33 4568999999999999999887776666422 122


Q ss_pred             CCC--e--eEEEECCCCCeEEEccCCCe
Q 016522          343 EGR--I--TCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       343 ~~~--v--~~~~~~~~~~~l~s~~~dg~  366 (388)
                      .+-  .  ..+-.. .+..|.+++.||+
T Consensus      2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             cchhhhcCceeeec-cCceEEEecCCCC
Confidence            211  1  222222 2446777777763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.2e-10  Score=91.38  Aligned_cols=282  Identities=12%  Similarity=0.094  Sum_probs=176.0

Q ss_pred             CCcEEEEECCCCCe---eeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522           88 DGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV  161 (388)
Q Consensus        88 dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v  161 (388)
                      +.-|.+|++.+..-   ....-...+.++-++|+|+++.|.++..   +|.|..|.++...   +.+...........+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCCC
Confidence            45799999874321   1122335566899999999999998755   4788888887632   2222333333333444


Q ss_pred             EEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEE---eecccccCC----ccCeEEEEeeCCCCcEEEEeeC-CCceE
Q 016522          162 SCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSV---FGGEFQSGH----TADVLSVSISGSNSRMFVSGSC-DSTAR  232 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~---~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~-dg~i~  232 (388)
                      +.+++++++..++.+....|.|.++-++. |.....   ........|    ...+....+.| +++++++.+- --.|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence            78899999754444555678999999866 332222   111111111    12277888999 7777766543 34799


Q ss_pred             EEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCC-ceeeEeeecc----CCCCCCCeEEE
Q 016522          233 LWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG-HQLQVYYQQH----GENEIPHVTSI  303 (388)
Q Consensus       233 i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~----~~~~~~~i~~~  303 (388)
                      +|++..+.-.   ...+ ........|.|+|++++..+.+ -+++|.+|..... ..+..+....    .-....+...+
T Consensus       171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            9999855211   1112 2345678999999999987766 5889999998774 2222222111    11223457889


Q ss_pred             EecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522          304 AFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHYY  374 (388)
Q Consensus       304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~  374 (388)
                      .+++||++|+++.. ...|.+|.+........+......+........|+++|++|++++. +..|.+|....
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            99999999998754 2378888765432111111111344455789999999999998876 45688887654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.50  E-value=3e-10  Score=107.86  Aligned_cols=295  Identities=13%  Similarity=0.086  Sum_probs=189.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEE----ECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVW----NALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS--  140 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~--  140 (388)
                      .+.|.++.|-++...++.+..+|.|.+.    +..+... ...-.-...|.+++||||+..|+..+.++++.+..-.-  
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4689999999999999999999999999    5443332 22333445699999999999999999998887765321  


Q ss_pred             -----------CC----------CCC------CCC--------ce----eEEecccccceEEEEEEeCCCceEEEeeC--
Q 016522          141 -----------PT----------DKD------GNL--------PV----SRMLSGHKGYVSCCQYVPDEDTHLITSSG--  179 (388)
Q Consensus       141 -----------~~----------~~~------~~~--------~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--  179 (388)
                                 +.          ...      ++.        ..    ...+. +...-..++|-.|| .++++.+.  
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~  231 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEP  231 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEc
Confidence                       00          000      000        00    00111 33455678999998 56666553  


Q ss_pred             -C---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---CCceEEEECCCCCcceEEEe--ccc
Q 016522          180 -D---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFH--GHE  250 (388)
Q Consensus       180 -d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~--~~~  250 (388)
                       .   ..++||+-+ |......     ....+--.+++|.| .++++++.-.   ...|.+|.-+....-...+.  ...
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stS-----E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTS-----EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             CCCceeEEEEECCC-ceEEecc-----ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence             2   579999965 5544443     33334456789999 8888888664   34677777543222222222  345


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcc--
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL--  327 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~--  327 (388)
                      ..|..+.|++|+..||....|. |.+|-..+.+-..+.......  ...+..+.|+|... .|.+.+.+|.+..++..  
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            6799999999999999987665 999998876643333222111  11245588998654 56666666766555431  


Q ss_pred             --cc--------eEEeecc---------------C----CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          328 --LA--------KVVLNLG---------------S----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       328 --~~--------~~~~~~~---------------~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                        .+        ..+..+.               +    ..-....+|.+++|++++..+++-..||.|.+|....
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence              11        0111110               0    0012457899999999998899999999999998543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.49  E-value=5.8e-10  Score=107.99  Aligned_cols=252  Identities=15%  Similarity=0.130  Sum_probs=165.0

Q ss_pred             eEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC--------------CccEEEEEECCCCCEEEEee-CCCcEE
Q 016522           71 YSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------CAWVMTCAFSPTGQSVACGG-LDSVCS  134 (388)
Q Consensus        71 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~  134 (388)
                      ..+++++. ++.+++-+.++.|.+||.. +..+..+...              -.....++++++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 5677777788899999975 4544433321              12357899999888766654 456899


Q ss_pred             EEeCCCCCCCCCCCceeEEecc----------c-------ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSG----------H-------KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~----------~-------~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  197 (388)
                      ++|+.++.        ...+.+          .       -.....++++|+++.++++.+.++.|++||..++......
T Consensus       650 ~id~~~~~--------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        650 EIDFVNET--------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             EEecCCCE--------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence            99986632        111110          0       1123578999966677888888999999999877543221


Q ss_pred             eccc---c------cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE------------Eec--------
Q 016522          198 GGEF---Q------SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------------FHG--------  248 (388)
Q Consensus       198 ~~~~---~------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~--------  248 (388)
                      ....   .      ...-.....++++|+++.++++.+.++.|++||+.++...+..            +..        
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            1000   0      0112345679999944447777777899999998865221100            000        


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEEEEecCCc
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGD  320 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (388)
                      .-.....++++++|+++++-+.++.|++||..++..........        ..........++++++|+++++-+.++.
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            01124689999999988888899999999998766543322110        0111234688999999998888888999


Q ss_pred             EEEEEcccceE
Q 016522          321 CYVWDTLLAKV  331 (388)
Q Consensus       321 i~i~d~~~~~~  331 (388)
                      |++||+.+++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=4.6e-11  Score=101.15  Aligned_cols=274  Identities=15%  Similarity=0.158  Sum_probs=175.5

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC--CEEEE--
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC--  126 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~--  126 (388)
                      .|+..+......+..-...=++..|++|..+.|-- ..+.+.+|+..+.+ ...-+.|...|+.+.++|.+  ..+|+  
T Consensus       109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyv  186 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYV  186 (566)
T ss_pred             eeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEc
Confidence            44444433334444333333688899887644322 23579999987633 33345567779999999874  33443  


Q ss_pred             ---eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----------CCeEEEEecCCCc
Q 016522          127 ---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGL  192 (388)
Q Consensus       127 ---~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~~  192 (388)
                         .+.-+.+++|.......  ......+.+  ....-..+.|++.|..+|+.++.           ..+++++++....
T Consensus       187 Pe~kGaPa~vri~~~~~~~~--~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s  262 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPEEGQ--HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES  262 (566)
T ss_pred             cCCCCCCcEEEEeccccccc--cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence               35567899999873210  000011111  11222357888877666655433           2468888887444


Q ss_pred             eEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-
Q 016522          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-  270 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  270 (388)
                      ....      ....++|.++.|+|+...+.+ -|-.-..+.|||++-  .++..+  .+++-+++-|+|.|++|+.++- 
T Consensus       263 ~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  263 VSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFG  332 (566)
T ss_pred             EEEe------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecC
Confidence            4433      356899999999994444333 355667899999873  455444  4677889999999999998875 


Q ss_pred             --CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcccceEEeeccCCCCCc
Q 016522          271 --DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       271 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                        -|.|-+||+.+.+.+..+....       .+-+.|+|||+++++++.      |+.++||++ +|..+....     .
T Consensus       333 NL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-----f  399 (566)
T KOG2315|consen  333 NLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-----F  399 (566)
T ss_pred             CCCCceEEEeccchhhccccccCC-------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-----h
Confidence              4789999999977777665432       467899999999998875      678999997 455544321     1


Q ss_pred             CCCeeEEEECC
Q 016522          343 EGRITCLGLSA  353 (388)
Q Consensus       343 ~~~v~~~~~~~  353 (388)
                      ......+.|-|
T Consensus       400 ~sEL~qv~W~P  410 (566)
T KOG2315|consen  400 KSELLQVEWRP  410 (566)
T ss_pred             hHhHhheeeee
Confidence            11466667765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=9.3e-11  Score=103.06  Aligned_cols=228  Identities=12%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             ccccccCCeeEEEeCCCCCeE---EEEeCCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CC----
Q 016522           62 TLQGHAGKVYSLDWTSERNRI---VSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DS----  131 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l---~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----  131 (388)
                      .|......+.+-+|+|||+.+   ++...+|  .|.+.++.+++...... ..+.....+|+|||+.|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcce
Confidence            344455667788999999752   2444444  57777888776544333 3344567899999998887653 22    


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE--ecCC-CceEEEeecccccCCccC
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DITT-GLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~--d~~~-~~~~~~~~~~~~~~~~~~  208 (388)
                      .+..|++..+..  +  ........+.+.....+|+|+|..++++...+|...+|  ++.. +.....+     ......
T Consensus       258 ~~~~~~~~~g~~--g--~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----t~~~~~  328 (428)
T PRK01029        258 FIQSFSLETGAI--G--KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----TKKYRN  328 (428)
T ss_pred             eEEEeecccCCC--C--cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----ccCCCC
Confidence            334466654210  0  12222222233445679999986555555566755555  4432 2222323     233456


Q ss_pred             eEEEEeeCCCCcEEEEeeC-C--CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCC
Q 016522          209 VLSVSISGSNSRMFVSGSC-D--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTG  282 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  282 (388)
                      +....|+| +++.|+..+. +  ..|.+||+..+ .. ..+......+....|+|||+.|+..+.   ...|.++|+..+
T Consensus       329 ~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        329 SSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             ccceeECC-CCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            67889999 6666655443 3  36899998866 33 334333445678999999998875443   356888998877


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCC
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                      +....... .+     .+...+|+|-
T Consensus       406 ~~~~Lt~~-~g-----~~~~p~Ws~~  425 (428)
T PRK01029        406 KTRKIVIG-SG-----EKRFPSWGAF  425 (428)
T ss_pred             CEEEeecC-CC-----cccCceecCC
Confidence            65443321 11     2456677764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.45  E-value=3.4e-10  Score=98.94  Aligned_cols=266  Identities=15%  Similarity=0.116  Sum_probs=164.0

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      .+..+++++.+|.|..+|..+|+.+..............  .++..+++++.+|.+..+|..+++       ....... 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~-  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK-------ELWRAKL-  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCc-------Eeeeecc-
Confidence            356888899999999999999998877765543222222  256778888899999999998765       2222211 


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      .+.+.+..... + ..++.++.+|.|..||.++++.+..+.............+....  + ..++.+..+|.+..+|.+
T Consensus       134 ~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       134 SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEcc
Confidence            12222211112 2 35777788999999999999887776321100000000111222  2 356778888999999998


Q ss_pred             CCCcceEEEec-ccC---C---eeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522          238 VASRAVRTFHG-HEG---D---VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       238 ~~~~~~~~~~~-~~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                      ++. .+-.... ...   .   ...+.-+|  .+..+++++.+|.+..||..+++.......   .    ......  ..
T Consensus       209 tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~----~~~~p~--~~  278 (377)
T TIGR03300       209 TGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---S----SYQGPA--VD  278 (377)
T ss_pred             CCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---C----CccCce--Ee
Confidence            773 3222111 000   0   00111112  356788888999999999999987765532   1    011222  24


Q ss_pred             CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +..+++++.+|.++.+|..+++.+......   ..........  .+..|++++.||.|.+++..
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            667888889999999999999887765211   1111222222  35688999999999998864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.44  E-value=1.8e-11  Score=97.39  Aligned_cols=198  Identities=16%  Similarity=0.239  Sum_probs=147.8

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEEC----CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA----LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      ..+++++.+.++...|+.|-..|++.-+.+    +.....+....|...+..+.|+.....+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            458999999999999999999999998855    4455566677899999999999999999999999876554444432


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--CCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      .. +.+..    .   ..-+++.+.-   .+...|...|.|....+.  .-..+..+     .+|...+.+++|.| ...
T Consensus       148 ~l-g~Y~~----~---~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~-----~~h~~~~~~l~Wd~-~~~  210 (404)
T KOG1409|consen  148 RL-GGYNF----E---TPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTF-----NGHTGEVTCLKWDP-GQR  210 (404)
T ss_pred             cc-cceEe----e---ccCCCCceee---EEEEecccccceEEEEEeecCCceEEEE-----cCcccceEEEEEcC-CCc
Confidence            11 11000    0   0011111111   134455555666554443  33455555     79999999999999 888


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      ++++|..|..+.+||+-........+.+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9999999999999999877677788899999999999988888999999999999999863

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.44  E-value=7.2e-10  Score=107.33  Aligned_cols=251  Identities=12%  Similarity=0.120  Sum_probs=161.8

Q ss_pred             EEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--------------cccceEEEEEEeCCCceEEEe
Q 016522          113 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--------------HKGYVSCCQYVPDEDTHLITS  177 (388)
Q Consensus       113 ~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~  177 (388)
                      ..+++++. +..+++-..++.|++||.....        .....+              .-.....+++.++++.++++-
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~--------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF--------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE--------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            46788774 5666666778899999986521        111111              112357789998764445555


Q ss_pred             eCCCeEEEEecCCCceEEEeeccccc-----C-------CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE
Q 016522          178 SGDQTCVLWDITTGLRTSVFGGEFQS-----G-------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (388)
Q Consensus       178 ~~dg~v~i~d~~~~~~~~~~~~~~~~-----~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (388)
                      ...+.|+++|+.++... ++......     +       .-.....++++|.++.++++...++.|++||...+.  +..
T Consensus       643 t~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~  719 (1057)
T PLN02919        643 TENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRV  719 (1057)
T ss_pred             CCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEE
Confidence            56678999998776533 22110000     0       012346789998677788888888999999987552  222


Q ss_pred             Eecc---------------cCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCCceeeEeeec---------cC-------
Q 016522          246 FHGH---------------EGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQ---------HG-------  293 (388)
Q Consensus       246 ~~~~---------------~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-------  293 (388)
                      +.+.               -.....++++|+++.| ++-+.++.|++||+.++.........         .+       
T Consensus       720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~  799 (1057)
T PLN02919        720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS  799 (1057)
T ss_pred             EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence            2111               1235679999998854 55566789999999876532111000         00       


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC---------CCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      .........++++++|.++++-+.++.|++||..++........-         ..+.-.....++++++|+++++-+.+
T Consensus       800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            001113468899999998888888999999999877665432110         01122367899999999999998999


Q ss_pred             CeEEEeccce
Q 016522          365 TNLKVSLHYY  374 (388)
Q Consensus       365 g~v~iw~~~~  374 (388)
                      +.|++|+...
T Consensus       880 n~Irvid~~~  889 (1057)
T PLN02919        880 SLIRYLDLNK  889 (1057)
T ss_pred             CEEEEEECCC
Confidence            9999998754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=4.1e-11  Score=105.34  Aligned_cols=244  Identities=17%  Similarity=0.159  Sum_probs=179.8

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC------------CEEEEeeCCCcE
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG------------QSVACGGLDSVC  133 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i  133 (388)
                      |...-.++.|+|.| +||-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|..            -.|+++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            33446789999988 7887775 479999999999999999999999999998732            257778888999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC---CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      .+||.....       ....+..|..++..++|.+..   ..+++.-....++.+|+..+|+.....     ........
T Consensus        92 il~d~~~~s-------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~~iLs  159 (1062)
T KOG1912|consen   92 ILVDFVLAS-------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSHEILS  159 (1062)
T ss_pred             EEEEehhhh-------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCCccee
Confidence            999998755       456677888999999998742   245777777789999999999998887     55566677


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCC------CcceEEEecccC----------------C---------eeEEEEc
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEG----------------D---------VNTVKFF  259 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~----------------~---------i~~~~~~  259 (388)
                      |+.+.|.+...+..-+..|.+.+-+.-..      .+.++.-..|..                .         ...++|+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            79999988888888788888877764322      122222222221                0         1235678


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcEEEEEccc
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~  328 (388)
                      |.-+.++.......+.++|++-..++.......+.     +.-+.+-|+++  .|+++..||.+.+|-.+.
T Consensus       240 p~~rn~lfi~~prellv~dle~~~~l~vvpier~~-----akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDLEYECCLAVVPIERGG-----AKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhhceEEEEeccceEEEcchhhceeEEEEeccCC-----cceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            85555555556678999999988888777654432     44556666654  899999999999996543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=5.4e-11  Score=103.75  Aligned_cols=253  Identities=12%  Similarity=0.188  Sum_probs=174.5

Q ss_pred             CCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCC
Q 016522           53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      .+.++..-++|.||++.|.-+.|+.+.+.|-|+..+|.|.+|-+-.+.-.....  -..+-|.++.|+.+|..++....|
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD  136 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED  136 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence            345667778999999999999999999999999999999999988776543332  234568999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-------eEEEeeccccc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-------RTSVFGGEFQS  203 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~  203 (388)
                      |.|.|=.++.+.-      .-+.+++  .....+.|++|. ..++.+-..|.+.+||.+..-       +...... ...
T Consensus       137 GavIVGsvdGNRI------wgKeLkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg-~~s  206 (1189)
T KOG2041|consen  137 GAVIVGSVDGNRI------WGKELKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG-IFS  206 (1189)
T ss_pred             CCEEEEeecccee------cchhcch--heccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee-eec
Confidence            9998888776431      1111221  123467899986 567778888999999976531       1111100 002


Q ss_pred             CCccCeEEEEee-------CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC----
Q 016522          204 GHTADVLSVSIS-------GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG----  272 (388)
Q Consensus       204 ~~~~~i~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----  272 (388)
                      .....|..+.|.       |++...|+++..+|.+.+-.-.+...++..-.  .-.+..+.|+++|..|++++.+.    
T Consensus       207 ~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~  284 (1189)
T KOG2041|consen  207 NFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADE  284 (1189)
T ss_pred             CCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccC
Confidence            233346666664       34778899999999998876655544544333  35788999999999999988642    


Q ss_pred             -----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          273 -----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       273 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                           .|.+|.. -|+.+..+.....     .|++++|-..|-.++.+ -|+.|++=
T Consensus       285 ~~d~n~v~Fysp-~G~i~gtlkvpg~-----~It~lsWEg~gLriA~A-vdsfiyfa  334 (1189)
T KOG2041|consen  285 PTDSNKVHFYSP-YGHIVGTLKVPGS-----CITGLSWEGTGLRIAIA-VDSFIYFA  334 (1189)
T ss_pred             ccccceEEEecc-chhheEEEecCCc-----eeeeeEEcCCceEEEEE-ecceEEEE
Confidence                 4555553 3556666655433     38888887766555554 34444443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=4.2e-13  Score=119.24  Aligned_cols=269  Identities=14%  Similarity=0.213  Sum_probs=187.1

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--c
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--V  132 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~  132 (388)
                      ..++..++|+.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|..+++.+.-.  .
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            46677889999999999999999999999999999999999999999999999999999999999999888765433  5


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ..+|++.+..      .....+.    .-.++.|+... ..-+.|+......+||++++....++.... ......-++.
T Consensus      1169 saLW~~~s~~------~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTG------GPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDT-VTSSYSNNLA 1236 (1516)
T ss_pred             HHHhcccccc------Ccccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcc-hhhhhhcccc
Confidence            7789987622      1222222    23467777653 334455555678999999997776642211 1222333778


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      .|+| ...+++   .||  .+||.+.. ..++.+...... ..=.|+|.|..++..+.     |||+++.+.+.......
T Consensus      1237 ~FsP-~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred             ccCC-CcceEe---eCc--eeeeeccH-HHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence            8998 555654   355  57999987 777777655422 23469999999998775     89999988776653322


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEec--C---------------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYS--N---------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                             -+.+.|+..|..++..-.  |               ...+-||....+.+.++     ....+|..++-+|..
T Consensus      1304 -------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-----~v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1304 -------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-----PVDRCLLDLCTEPTD 1371 (1516)
T ss_pred             -------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee-----ecccchhhhhcCCcc
Confidence                   367889988887765431  0               12334444444444444     223456666666666


Q ss_pred             CeEEE
Q 016522          356 SALCT  360 (388)
Q Consensus       356 ~~l~s  360 (388)
                      .+|..
T Consensus      1372 ~~l~v 1376 (1516)
T KOG1832|consen 1372 SFLGV 1376 (1516)
T ss_pred             ceEEE
Confidence            66654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=8.6e-11  Score=92.48  Aligned_cols=257  Identities=18%  Similarity=0.292  Sum_probs=167.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc------------cceEEEEEEeC-CCceEEE
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPD-EDTHLIT  176 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~~  176 (388)
                      ..|+++.|...|.++++|...|.|.+|.-+...  .-+......+++|.            ..|..+.|..+ +...++.
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            458999999999999999999999999876533  11222233344443            35777888765 4456888


Q ss_pred             eeCCCeEEEEecCCCceE-------------------------------------EEeecc-cccCCccCeEEEEeeCCC
Q 016522          177 SSGDQTCVLWDITTGLRT-------------------------------------SVFGGE-FQSGHTADVLSVSISGSN  218 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~-------------------------------------~~~~~~-~~~~~~~~i~~~~~~~~~  218 (388)
                      .+.|.+|++|.+......                                     ...+.. ....|.-.+.++.++. +
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D  183 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D  183 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence            899999999987654110                                     000000 1245777788999986 5


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEE--Eeccc-----CCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceee----
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRT--FHGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ----  286 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~----  286 (388)
                      ...++++ .|-.|.+|++.........  +.+|.     .-|++..|+| ....+.-.+..|.|++-|++......    
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            5555554 5778999998866444333  33333     3588999999 45667777788999999998532211    


Q ss_pred             --Eeeecc-----CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-EEeeccCCC--------CCcCCCe---e
Q 016522          287 --VYYQQH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQ--------NSHEGRI---T  347 (388)
Q Consensus       287 --~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------~~~~~~v---~  347 (388)
                        ......     -......|..+.|+++|+++++-+.. +|.+||.+..+ ++.++....        ....+.|   .
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence              000000     01123458899999999999887544 89999987643 445441100        0011222   4


Q ss_pred             EEEECCCCCeEEEccCCCeEEEec
Q 016522          348 CLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       348 ~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .+.|+.|.+.+.+|+.....-||-
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEEecCCcccccccccccceeeec
Confidence            577888889999999888777764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=3.1e-11  Score=96.12  Aligned_cols=210  Identities=17%  Similarity=0.290  Sum_probs=147.2

Q ss_pred             CCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCeee---------------Ee---------------------eeCC
Q 016522           68 GKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTH---------------AI---------------------KLPC  109 (388)
Q Consensus        68 ~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~---------------~~---------------------~~~~  109 (388)
                      ..|..+.|.++++  .++..+.|.+|++|.+.......               .+                     ..|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4688999998764  56677789999999874321100               00                     2345


Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-----cccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~  184 (388)
                      --|.++.++.|+..++++ .|=.|.+|+++-..   +.+... ..+.     -..-|++..|+|..-+.++-++..|+|+
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d---~sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIID---QSFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccC---CceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            568899999999988876 46789999998633   111111 1222     2356888999998778888899999999


Q ss_pred             EEecCCCceEEE----eecc-------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--
Q 016522          185 LWDITTGLRTSV----FGGE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--  251 (388)
Q Consensus       185 i~d~~~~~~~~~----~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--  251 (388)
                      +-|++....-..    +..+       +...--..|..+.|++ +|+++++-+. -+|++||+....+++.+++-|..  
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            999985422111    1000       0022235678899998 8888876543 58999999877788888877642  


Q ss_pred             ----------C---eeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          252 ----------D---VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       252 ----------~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                                .   -..++|+.++.++++|+..+..++|++..|..
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence                      1   24578998999999999999999999765543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=7.9e-10  Score=93.78  Aligned_cols=278  Identities=12%  Similarity=0.098  Sum_probs=175.8

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-----------CCcEEEEeC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-----------DSVCSIFNL  138 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vw~~  138 (388)
                      =+-+.|||.|.||+|-...| |.+|--.+...++.+. |. .|.-+.|||..+||++=+.           ...+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            45689999999999988776 8899866666666554 33 3889999999999998542           247999999


Q ss_pred             CCCCCCCCCCceeEEecc---cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          139 NSPTDKDGNLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      .++..       .+.+..   ....-.-..|+.++ .+++.-.. ..|.||+..+-..+..-     .-.-..|....|+
T Consensus       290 ~tG~l-------krsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~K-----slki~gIr~Fsws  355 (698)
T KOG2314|consen  290 ATGLL-------KRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKK-----SLKISGIRDFSWS  355 (698)
T ss_pred             cccch-------hcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccc-----ccCCccccCcccC
Confidence            99762       222222   11222346788885 66766555 56999987764333222     3445678889999


Q ss_pred             CCCCcEEEEeeCC-----CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC----------CCcEEEEECC
Q 016522          216 GSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD----------DGTCRLFDIR  280 (388)
Q Consensus       216 ~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~  280 (388)
                      | .+++||-=+..     ..+.+-.+... +.+++..-+.-.=..+-|-.+|.+|+.--.          -..+.|+.++
T Consensus       356 P-~~~llAYwtpe~~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir  433 (698)
T KOG2314|consen  356 P-TSNLLAYWTPETNNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR  433 (698)
T ss_pred             C-CcceEEEEcccccCCcceEEEEecCcc-ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence            9 66666643221     24455555444 444444444433345677778888875321          1235566665


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---CCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ..........     -...|...+|-|.|..+++-+.   ..++.+|.+.+ ......+.   .-.....+.+.|+|.|+
T Consensus       434 eKdIpve~ve-----lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk---~~dk~~~N~vfwsPkG~  505 (698)
T KOG2314|consen  434 EKDIPVEVVE-----LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK---ELDKKFANTVFWSPKGR  505 (698)
T ss_pred             ccCCCceeee-----cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh---hhcccccceEEEcCCCc
Confidence            4433222211     1224889999999996665433   34788998773 22221111   11234568899999999


Q ss_pred             eEEEcc---CCCeEEEeccce
Q 016522          357 ALCTGS---WDTNLKVSLHYY  374 (388)
Q Consensus       357 ~l~s~~---~dg~v~iw~~~~  374 (388)
                      +++.+.   ..|.+.+++..+
T Consensus       506 fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  506 FVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             EEEEEEecccccceEEEecch
Confidence            988764   468888887664

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=5.5e-10  Score=98.43  Aligned_cols=218  Identities=13%  Similarity=0.111  Sum_probs=152.8

Q ss_pred             CcccCCCCceeeeccccccCCeeEEEeCCCC------------CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSER------------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA  116 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~------------~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~  116 (388)
                      +..-+....+.+.++..|...|+.+.|.|..            -+||++...|.|.+||...+..+..+..+..++..++
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC  116 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence            3344556778888999999999999998732            2678888899999999999999999999999999999


Q ss_pred             ECC---CC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-
Q 016522          117 FSP---TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-  191 (388)
Q Consensus       117 ~~~---~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-  191 (388)
                      |-+   +. ..|++-.....+.+|+..++.       .............|+.+.|-....+..-+..|.|.+-+.-.. 
T Consensus       117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s  189 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGE-------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS  189 (1062)
T ss_pred             eeeccCcchheeEEecCCcEEEEEEccCCc-------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence            966   33 567777778899999999876       333333344566778888876667777777787777664321 


Q ss_pred             ------ceEEEeecccccCCcc-------------------------CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC
Q 016522          192 ------LRTSVFGGEFQSGHTA-------------------------DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (388)
Q Consensus       192 ------~~~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (388)
                            +....-     ..|..                         ....++|+|.-.+.++.. ....+.++|+.-. 
T Consensus       190 ep~~pgk~~qI~-----sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~-  262 (1062)
T KOG1912|consen  190 EPDVPGKEFQIT-----SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE-  262 (1062)
T ss_pred             CCCCCceeEEEe-----cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh-
Confidence                  111111     11111                         012345677555555544 4667999999866 


Q ss_pred             cceEEEecccCCeeEEEEccCC--CEEEEeeCCCcEEEEECC
Q 016522          241 RAVRTFHGHEGDVNTVKFFPDG--NRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~  280 (388)
                      .++.......+.+.-+.+-|++  ..|+++..||.+.+|--+
T Consensus       263 ~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  263 CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            5666655555656667777654  468889999999998654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=3.6e-12  Score=107.79  Aligned_cols=251  Identities=16%  Similarity=0.207  Sum_probs=175.0

Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ  181 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  181 (388)
                      +..+.+|...|..++--.+.+.+++++.|.+|++|.++......+...+..++..|+.+|.++.|..+. +++  ++.||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccC
Confidence            345667888888887777788899999999999999998665555556778899999999999999874 344  45588


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCC-CCcEEEEe-eCCCceEEEECCCCCcceEEE-----ecccCCee
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRAVRTF-----HGHEGDVN  254 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~  254 (388)
                      -|.+||.--+..+.....   ....+.+..+..-+. +..++.+| +...+|+++|.+.. .-...+     .+.+..+.
T Consensus       805 giHlWDPFigr~Laq~~d---apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMED---APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cceeecccccchhHhhhc---CcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchhee
Confidence            899999877766553321   223334444444443 34455544 77889999999876 333333     23445688


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE-EEcccceEEe
Q 016522          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV-WDTLLAKVVL  333 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~  333 (388)
                      +++..|.|+.++.+-..|.|.+.|.++|+.+..+......     ...++ .|..+.++....|.++.+ |....+....
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd-----llqla-apsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD-----LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch-----hhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence            9999999999999999999999999999988766443222     23332 366677887778888888 9877776665


Q ss_pred             eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +..    ....+..-+  -.-|.-|+++.....+.||.
T Consensus       955 q~k----pppepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  955 QDK----PPPEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             ccC----CCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence            552    221221111  12355677777777777775

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.36  E-value=3.2e-11  Score=94.81  Aligned_cols=256  Identities=13%  Similarity=0.163  Sum_probs=166.3

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCC------------ccEEEEEECCCC--CEEEEe
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG  127 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  127 (388)
                      .+.|+++.|...|.+|++|...|.|.+|.-+...     ....++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4579999999999999999999999999754432     122344443            357788886644  457777


Q ss_pred             eCCCcEEEEeCCCCCCC---------------CCC---------------------CceeEEecccccceEEEEEEeCCC
Q 016522          128 GLDSVCSIFNLNSPTDK---------------DGN---------------------LPVSRMLSGHKGYVSCCQYVPDED  171 (388)
Q Consensus       128 ~~dg~i~vw~~~~~~~~---------------~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~  171 (388)
                      +.|.+|++|.+....-+               .+.                     .+.......|.--|.++.++.+. 
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence            89999999998764100               000                     01111124677788899998874 


Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEE---eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-----
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSV---FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-----  243 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----  243 (388)
                      . .+.+..|-.|.+|+++-......   +.+.-......-|++..|+|...+.+.-.+..|.|++-|+|....+.     
T Consensus       185 e-t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 E-TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             h-eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            3 34455677899999875422211   11111122234578889999888888889999999999999542111     


Q ss_pred             ----------EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc-eeeEeeeccCC----------CCCCCeEE
Q 016522          244 ----------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGE----------NEIPHVTS  302 (388)
Q Consensus       244 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----------~~~~~i~~  302 (388)
                                .-+.+-...|..+.|+++|+++++-+. -++++||.+..+ ++.++..+...          .....-..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence                      011222346788999999999988654 589999998754 33443221110          00111245


Q ss_pred             EEecCCCCEEEEEecCCcEEEEE
Q 016522          303 IAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +.|+.+.+.+.+|+..+..-+|-
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEecCCcccccccccccceeeec
Confidence            67888888888888877777765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.32  E-value=1.5e-09  Score=83.78  Aligned_cols=244  Identities=11%  Similarity=0.064  Sum_probs=158.7

Q ss_pred             eEEEeCC-----CCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEEC-CCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522           71 YSLDWTS-----ERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTD  143 (388)
Q Consensus        71 ~~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~  143 (388)
                      ..+.|-|     ...+||.|+..|...+|...+.+. ......+...|+-+.=. -...-+..++.|.++++.+++.+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            3456666     335899999999999999886543 33334444333322211 1223466677888888888876431


Q ss_pred             CCCCCceeEEecccc--cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522          144 KDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                               ....|.  -.+.++.+++++ .++++.+....|..|.+........-  .........-.+..|+. ....
T Consensus       151 ---------~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~--~~~a~t~D~gF~~S~s~-~~~~  217 (344)
T KOG4532|consen  151 ---------KFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIEN--IYEAPTSDHGFYNSFSE-NDLQ  217 (344)
T ss_pred             ---------cceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeee--eEecccCCCceeeeecc-Ccce
Confidence                     112222  237889999986 78888899999999988765322111  01134455566778887 7789


Q ss_pred             EEEeeCCCceEEEECCCCCcceEE----EecccCCeeEEEEccCCC--EEEEeeCCCcEEEEECCCCceeeEeeeccCC-
Q 016522          222 FVSGSCDSTARLWDTRVASRAVRT----FHGHEGDVNTVKFFPDGN--RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-  294 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  294 (388)
                      +|++..||++.|||++....+...    -..|.+.+..+.|++.|.  +|+..-.-+.+.+.|++++...+.+...... 
T Consensus       218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~  297 (344)
T KOG4532|consen  218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE  297 (344)
T ss_pred             EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence            999999999999999977544332    345889999999998553  4555555678999999999877766543322 


Q ss_pred             --CCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          295 --NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       295 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                        .....|....|+.++.-+.+.+.+ .+.=|++..
T Consensus       298 ~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  298 RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             ccccccccccccccCCCcccccccch-hhheeeccc
Confidence              112236667777777766665544 344555443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.31  E-value=7.5e-09  Score=98.57  Aligned_cols=296  Identities=14%  Similarity=0.139  Sum_probs=185.1

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeC---C---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCc
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQ---D---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSV  132 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~  132 (388)
                      .+. +.+.-..++|-.||.++|+.+-   +   ..++||+-+ |....+-..-.+--.+++|.|.|+++|+...   ...
T Consensus       205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence            344 6667788999999999998774   2   579999954 6544444433343457899999999998765   345


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |.+|.-+.-+  .++  ....+......|..+.|++++ .+|+....|. |.+|-..+-......  +........+..+
T Consensus       283 VvFfErNGLr--hge--F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKq--ei~~~~~~~~~~~  354 (928)
T PF04762_consen  283 VVFFERNGLR--HGE--FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQ--EIRFSSSESVNFV  354 (928)
T ss_pred             EEEEecCCcE--eee--EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEE--EEEccCCCCCCce
Confidence            6677655432  111  111223455688999999997 6777766555 999987765432222  1112334445569


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECC----CCC-------cceEEEe-----------------------cccCCeeEEEE
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTR----VAS-------RAVRTFH-----------------------GHEGDVNTVKF  258 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~----~~~-------~~~~~~~-----------------------~~~~~i~~~~~  258 (388)
                      .|+|.+...|...+.+|.+..+++.    ...       ..+..+.                       ....+|.+++|
T Consensus       355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf  434 (928)
T PF04762_consen  355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF  434 (928)
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence            9999888888888887877666542    110       0111111                       12467999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCcee--------eEeee-----ccCCCCCCCeEEEEecCCCCEEEEEecC---CcEE
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQL--------QVYYQ-----QHGENEIPHVTSIAFSISGRLLFAGYSN---GDCY  322 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~  322 (388)
                      ++++..+++...||.|.+|........        ..+..     .........+..++|..+..+++....+   ..+.
T Consensus       435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  514 (928)
T PF04762_consen  435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV  514 (928)
T ss_pred             eCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence            999888999999999999986443211        11111     0111123357888888877766665554   5788


Q ss_pred             EEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          323 VWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       323 i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +++....+   .....    ..-.+.+..+...++...++.-..||.+....
T Consensus       515 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~  562 (928)
T PF04762_consen  515 LVDIDDSENSASVESS----TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS  562 (928)
T ss_pred             EEEeccCCCceeEEEE----eccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence            88874332   22222    23345566666666555466666788887544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.31  E-value=2.1e-09  Score=89.63  Aligned_cols=222  Identities=14%  Similarity=0.156  Sum_probs=150.5

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc--eeEEec--ccccceEEEE-EEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP--VSRMLS--GHKGYVSCCQ-YVPDEDTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      .||+.++. +..|.|.+||..+..-..-+.-  ..+...  ....+..-+. |++..+.+++..+. |...+.+...+-.
T Consensus       276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~  353 (668)
T COG4946         276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYS  353 (668)
T ss_pred             CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCee
Confidence            35666654 3467899999887542211111  110000  0011111111 33333466766665 6778887766655


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  272 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  272 (388)
                      +.       .++...|.-..+.. +++-++.|..|| .+-+||.+.+  .+..+...-+.|.++..+|+|++++.+....
T Consensus       354 iq-------v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~  423 (668)
T COG4946         354 IQ-------VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRF  423 (668)
T ss_pred             EE-------cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence            54       35666677777765 556788899999 8999999865  4566677778999999999999999999999


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC----cEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      .|.+.|+.++.....-....     .-|+.+.|+|+++++|-+--+|    .|+++|+..++....-..  .++.   .+
T Consensus       424 el~vididngnv~~idkS~~-----~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~D---fs  493 (668)
T COG4946         424 ELWVIDIDNGNVRLIDKSEY-----GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYD---FS  493 (668)
T ss_pred             EEEEEEecCCCeeEeccccc-----ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccc---cC
Confidence            99999999987765543333     3499999999999999987766    689999998887654321  2232   45


Q ss_pred             EEECCCCCeEEEcc
Q 016522          349 LGLSADGSALCTGS  362 (388)
Q Consensus       349 ~~~~~~~~~l~s~~  362 (388)
                      -+|.||+++|.--+
T Consensus       494 PaFD~d~ryLYfLs  507 (668)
T COG4946         494 PAFDPDGRYLYFLS  507 (668)
T ss_pred             cccCCCCcEEEEEe
Confidence            57899999876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.30  E-value=3.9e-08  Score=80.46  Aligned_cols=221  Identities=20%  Similarity=0.223  Sum_probs=143.2

Q ss_pred             EEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC-CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           72 SLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        72 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      +..|.+ ++.++++--..+.|..|+..++... .+....  ...+++. +++.+ +.+... .+.++|..+++     ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~-----~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGK-----VT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEE-EEEETT-CEEEEETTTTE-----EE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEE-EEEEcC-ceEEEecCCCc-----EE
Confidence            578888 6777777778899999998776543 333333  6677777 56554 444444 45566887743     11


Q ss_pred             eeEEe--cc-cccceEEEEEEeCCCceEEEeeCC--------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522          150 VSRML--SG-HKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       150 ~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                      .....  .. .....+++++.++| ++.++....        |.|..++.. ++.....      ..-...+.++|+|++
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETTS
T ss_pred             EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCcc
Confidence            22222  12 45678899999997 456655433        568888877 4443333      234567899999944


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcce---EEE---ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAV---RTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      ..++++-+..+.|..|++......+   ..+   ....+..-.+++..+|++.++....+.|.+++.. ++.+..+....
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~  224 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV  224 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence            4456677788899999987542211   122   2222237789999999988888888999999987 88777776542


Q ss_pred             CCCCCCCeEEEEe-cCCCCEEEEEe
Q 016522          293 GENEIPHVTSIAF-SISGRLLFAGY  316 (388)
Q Consensus       293 ~~~~~~~i~~~~~-~~~~~~l~~~~  316 (388)
                      .     .+++++| -++.+.|++.+
T Consensus       225 ~-----~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 P-----RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             S-----SEEEEEEESTTSSEEEEEE
T ss_pred             C-----CEEEEEEECCCCCEEEEEe
Confidence            2     4899999 46766666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.28  E-value=7.2e-11  Score=90.49  Aligned_cols=167  Identities=17%  Similarity=0.199  Sum_probs=110.2

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeC-----CCcEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGL-----DSVCS  134 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~  134 (388)
                      +.+..|.++-.+-+.+-.++.+++++.||.+.+++.+.-.. ...+......-.+.+....+..+.++..     -+..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            34444555444444555667899999999999998765211 1111111111223333445555555432     24556


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      .|+++..+   ...+..+    ....|++++-+|...+++++|+.||.+-+||.+.......    ....|+.++..+.|
T Consensus       163 a~~~~p~~---t~~~~~~----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S----~l~ahk~~i~eV~F  231 (319)
T KOG4714|consen  163 ANTLDPIK---TLIPSKK----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS----LLKAHKAEIWEVHF  231 (319)
T ss_pred             eecccccc---ccccccc----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH----HHHHhhhhhhheec
Confidence            66666422   1111111    1233899999998888899999999999999998743332    23789999999999


Q ss_pred             eCCCCcEEEEeeCCCceEEEECCC
Q 016522          215 SGSNSRMFVSGSCDSTARLWDTRV  238 (388)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~  238 (388)
                      +|.++..|+++++||.+..||..+
T Consensus       232 Hpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  232 HPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCchheeEecCCCcEEEEcCCC
Confidence            999999999999999999999764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.8e-11  Score=96.40  Aligned_cols=177  Identities=12%  Similarity=0.212  Sum_probs=129.1

Q ss_pred             EEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC----C
Q 016522          165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----S  240 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~  240 (388)
                      +|+-+-..+-++.+.+-.|-+-|++++.....       ...+.|.++.|.. .++++..|+.+|.|..+|++..    .
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence            55533222235666777888999988754432       4667888999987 6789999999999999999865    2


Q ss_pred             cceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCce---eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          241 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .+...+ -|.+.|+++..-. ++++|++.+.+|+|++||++.-++   +..+..+.   ......-+-..+....+++++
T Consensus       290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv---N~~a~l~~~v~~eeg~I~s~G  365 (425)
T KOG2695|consen  290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV---NLSAYLPAHVKEEEGSIFSVG  365 (425)
T ss_pred             cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc---ccccccccccccccceEEEcc
Confidence            334444 3888999988776 788999999999999999998777   44443322   122223344566777899999


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .|...+||.+..+..+.++.......+..+.+++|..
T Consensus       366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             CeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            9999999999999999988655444555667777753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.6e-08  Score=88.46  Aligned_cols=213  Identities=10%  Similarity=0.021  Sum_probs=126.7

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE-EEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (388)
                      .|.+-|..... ...+.... ....-.|+|+|+. ++..+.+   ..|.++|+.++.        ...+....+......
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~  239 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSD  239 (419)
T ss_pred             eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeE
Confidence            44554543333 33333333 6778999999984 6654443   468888887754        222223445556678


Q ss_pred             EEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCc
Q 016522          166 YVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR  241 (388)
Q Consensus       166 ~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  241 (388)
                      |+|+|..++++.+.+  ..|.++|+.++......      .+........|+|++..++++....|  .|.+.|+..+ .
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~  312 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S  312 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence            999987766666544  46888898777644332      22222345579994445555554444  5666777655 2


Q ss_pred             ceEEEecccCCeeEEEEccCCCEEEEeeCC---------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      . ..+......  ...|+|+|+.|+..+..         ..|.+.|+.++...... .. .     ......|+|||+.|
T Consensus       313 ~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~~-~-----~~~~p~~SPDG~~I  382 (419)
T PRK04043        313 V-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT-AN-G-----VNQFPRFSSDGGSI  382 (419)
T ss_pred             e-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC-CC-C-----CcCCeEECCCCCEE
Confidence            2 222211111  24899999998877643         36888898877643322 21 1     12357899999977


Q ss_pred             EEEecCC---cEEEEEcccc
Q 016522          313 FAGYSNG---DCYVWDTLLA  329 (388)
Q Consensus       313 ~~~~~dg---~i~i~d~~~~  329 (388)
                      +....++   .+.+.++...
T Consensus       383 ~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        383 MFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEccCCcEEEEEEecCCC
Confidence            7665433   3666676543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.26  E-value=1.1e-07  Score=77.81  Aligned_cols=225  Identities=16%  Similarity=0.161  Sum_probs=143.8

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522          114 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       114 ~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +..|.+ ++.++++--..+.|..|+..++.        ........  ...+++...+ ..++.+...+ +.++|+.+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--------~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--------VEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe--------EEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCc
Confidence            567888 67777776678999999998743        22222222  5667777333 3455555544 4555998886


Q ss_pred             eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccCCeeEEEEccCCCE
Q 016522          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                      .................+.+++.| ++++.++....        |.|..++.. . + +......-...+.|+|+|+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEEEESSEEEEEEETTSSE
T ss_pred             EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-C-e-EEEEecCcccccceEECCcchh
Confidence            655553211112456788999999 77777775543        456677766 2 3 3333334556789999999987


Q ss_pred             EE-EeeCCCcEEEEECCCCce-e---eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          265 FG-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       265 l~-~~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                      |+ +-+..+.|..|++..... +   ..+...  .......-.++++.+|++.++....+.|.++|.. ++.+..+.   
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~---  221 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDF--PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE---  221 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEc--CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc---
Confidence            76 556778899999864332 1   122111  1111236789999999988888889999999987 88777763   


Q ss_pred             CCcCCCeeEEEE-CCCCCeEEEc
Q 016522          340 NSHEGRITCLGL-SADGSALCTG  361 (388)
Q Consensus       340 ~~~~~~v~~~~~-~~~~~~l~s~  361 (388)
                       .....+++++| -++.+.|+..
T Consensus       222 -~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  222 -LPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             --SSSSEEEEEEESTTSSEEEEE
T ss_pred             -CCCCCEEEEEEECCCCCEEEEE
Confidence             33458999999 4665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.9e-09  Score=86.91  Aligned_cols=263  Identities=12%  Similarity=0.127  Sum_probs=150.9

Q ss_pred             EEEEECCCCCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (388)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (388)
                      |++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++..       ....+..+ ..+++++|.-+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDld  246 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLD  246 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccC
Confidence            45555555555556667778899999999877 78889999999999999854       45555556 78999999999


Q ss_pred             CCceEEEeeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCC-----CCcEEEEeeCCCceEEEECCCCCc--
Q 016522          170 EDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASR--  241 (388)
Q Consensus       170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~--  241 (388)
                      ..+++..|...|.|.+||++..+-... +..   .....+|..++.-+.     .+.+++....  .+..|.+.....  
T Consensus       247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a---~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVA---NVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL  321 (463)
T ss_pred             CcceeEEeccCceEEEEEccCCCchHhhhhh---hhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC
Confidence            889999999999999999987532211 100   112234444443331     2334444333  245565443211  


Q ss_pred             -ceEEEecccCCeeEEEEccCCCEEEEeeCC-C------cEEE-EECCCCceeeEeeecc-CCCCC--CCeEEEEecCCC
Q 016522          242 -AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G------TCRL-FDIRTGHQLQVYYQQH-GENEI--PHVTSIAFSISG  309 (388)
Q Consensus       242 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g------~i~i-~d~~~~~~~~~~~~~~-~~~~~--~~i~~~~~~~~~  309 (388)
                       ++..+ +..+...++++.+-.+.++..... .      .+-. -|..+|..+....... +....  ..-..+.-.++.
T Consensus       322 p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             Cccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence             11111 234455566666643443333221 1      0111 1222333332221111 00000  000111123445


Q ss_pred             CEEE-EEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCC-eEEEccCCCeEEEeccc
Q 016522          310 RLLF-AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGS-ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       310 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~dg~v~iw~~~  373 (388)
                      ++++ +|...+.+.+||..+.+.+..+     ..+.+|.+++... ++. +|++ =.|..++||..+
T Consensus       401 n~iv~~gd~tn~lil~D~~s~evvQ~l-----~~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGDSTNELILQDPHSFEVVQTL-----ALSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecCCcceeEEeccchhheeeec-----ccCcceeecceeecCCcchhhh-eecceEEEEecC
Confidence            5444 4556678999999999999988     3447888887654 343 4444 457788888644

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.26  E-value=1.5e-10  Score=94.19  Aligned_cols=165  Identities=16%  Similarity=0.225  Sum_probs=115.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEE---eeCCCeEEEEec
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT---SSGDQTCVLWDI  188 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~v~i~d~  188 (388)
                      ...+..++.++++|++..+....++++.....   ...+...... ...-+.+.+..+.. ....   ++....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~v-~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSCV-PKRPTAISFIREDT-SVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEeec-ccCcceeeeeeccc-eEEEEeecCCceeeeeecc
Confidence            44556788899999999888888888876542   1112222211 12223444444432 2333   344455566665


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      ..+.....      .+|-..++.++++| ++.+++++..|..|++-........-...-+|..-|..++.-++ ..|+++
T Consensus       140 ~~~~~~~~------lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~  211 (390)
T KOG3914|consen  140 DSGRCEPI------LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG  211 (390)
T ss_pred             cccCcchh------hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec
Confidence            55444444      58999999999999 78999999999999998887663333344579999999999854 569999


Q ss_pred             eCCCcEEEEECCCCceeeEee
Q 016522          269 SDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.|++|++||+.+++.+.++.
T Consensus       212 sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  212 SGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCCcEEEEecccCCcccccc
Confidence            999999999999999886653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.9e-10  Score=93.95  Aligned_cols=257  Identities=18%  Similarity=0.168  Sum_probs=178.7

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC---CCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALT---SQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSP  141 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~  141 (388)
                      |++.|+.+.... .+++.+++.||.++.|.-..   -+.+..+..|...+.+++.+.++.++.+++. |..++++|+++-
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            888888886554 46999999999999997433   1234445677888999999999999999887 999999999874


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCC----ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDED----THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ...     ....+..-.+.   +.|....+    .+.++.-.+|.+.++|-....+...+.   ..-|..+|..+.+.+ 
T Consensus        87 Dmi-----nmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~q-  154 (558)
T KOG0882|consen   87 DMI-----NMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQ-  154 (558)
T ss_pred             chh-----hhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeec-
Confidence            311     11111111122   22222111    233444568899999987665332221   157899999999998 


Q ss_pred             CCcEEEEeeCCCceEEEECCCC----Cc-c---------eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          218 NSRMFVSGSCDSTARLWDTRVA----SR-A---------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~----~~-~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      -+..+++....|.|.-|.....    .. .         +..+........++.|+|++..+.+-+.|..|+++++.+++
T Consensus       155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            7788899999999999987631    11 0         11112234567899999999999999999999999999987


Q ss_pred             eeeEeeeccCC----------------------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          284 QLQVYYQQHGE----------------------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       284 ~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..+.+......                            .....-+.++|...|++|+.|+-=| |++.++.+++....+
T Consensus       235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            76554221110                            0112345678999999999887664 889999988887776


Q ss_pred             c
Q 016522          336 G  336 (388)
Q Consensus       336 ~  336 (388)
                      .
T Consensus       314 g  314 (558)
T KOG0882|consen  314 G  314 (558)
T ss_pred             c
Confidence            3

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.5e-08  Score=87.29  Aligned_cols=191  Identities=16%  Similarity=0.194  Sum_probs=120.6

Q ss_pred             ceEEEEEEeCCCceEEE-eeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--CceEEE
Q 016522          160 YVSCCQYVPDEDTHLIT-SSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLW  234 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~-~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~  234 (388)
                      ....-.|+|+|...++. ...  +..|.++|+.+++.....      ...+......|+|++..++++.+.+  ..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            67788999998653443 332  357999999888766554      2344556678999444555555544  457777


Q ss_pred             ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (388)
                      |+..+  ....+..+........|+|||+.|+..+. .+  .|.+.|+.+++.......  +.      ....|+|+|++
T Consensus       263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~------~~~~~SPDG~~  332 (419)
T PRK04043        263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK------NNSSVSTYKNY  332 (419)
T ss_pred             ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC------cCceECCCCCE
Confidence            87654  24444444443445689999998877663 23  588888887766443321  11      12389999998


Q ss_pred             EEEEecC---------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEecc
Q 016522          312 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLH  372 (388)
Q Consensus       312 l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~  372 (388)
                      |+.....         ..|++.|+.++... .+.    .. .......|+|||+.|+.... .+.-.+|..
T Consensus       333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT----~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        333 IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT----AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC----CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            8776543         26888898877653 332    11 22335789999997766554 344445443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.23  E-value=3.4e-08  Score=77.53  Aligned_cols=240  Identities=14%  Similarity=0.171  Sum_probs=133.1

Q ss_pred             EEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEee---eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           73 LDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ++.+++|+.||..- |..|.|=...+.  ..+....   .....=+.++|+||+.+||.+...|+|++||+....--  .
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF--V   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE--E
Confidence            56778898887654 556666544321  2222222   23344678999999999999999999999999863210  0


Q ss_pred             CceeEEe-cccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCC-----ceEEEeecccccCCccCeEEEEeeC
Q 016522          148 LPVSRML-SGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       148 ~~~~~~~-~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      .+..... ..-...|..+.|.+..     ...|+.-..+|.++-|-+..+     +....+  .+.......|.++.++|
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf--sf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF--SFSSHYPHGINSAVYHP  157 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE--EecccCCCceeEEEEcC
Confidence            0011101 1123556667676532     234667777888877765322     223333  22244577899999999


Q ss_pred             CCCcEEEEeeCCCc-eEEEECCCCCcceEEEecccCCeeEEEEccCCCE--EEEeeCCC------cEEEEECCCCceeeE
Q 016522          217 SNSRMFVSGSCDST-ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDG------TCRLFDIRTGHQLQV  287 (388)
Q Consensus       217 ~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg------~i~i~d~~~~~~~~~  287 (388)
                       ..++|++|+.... -....            +....+++-..-.+..+  .++...|+      +..+|.+-+.+   .
T Consensus       158 -~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~  221 (282)
T PF15492_consen  158 -KHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---F  221 (282)
T ss_pred             -CCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee---e
Confidence             5566666654321 00000            11111221111111110  11111111      11223222111   1


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      +..  .......|..|..||||..||+...+|.|.+|++.+-+....+
T Consensus       222 fs~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  222 FSR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             eec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            111  0123346999999999999999999999999999887776665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.22  E-value=1.3e-08  Score=79.81  Aligned_cols=207  Identities=13%  Similarity=0.142  Sum_probs=120.5

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-------CccEEEEEECCC------CCEEEEeeCCCcEEE
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT------GQSVACGGLDSVCSI  135 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~v  135 (388)
                      .=.-++||||+..||.+...|+|++||+.. ..+..+...       ...|..+.|.+.      ...|++-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            456799999999999999999999999865 334344322       245677777542      224677778888888


Q ss_pred             EeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          136 FNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      |-+..+............+.. +...|.++.|+|.. ++|+.||....      +++.  .       ......+++-..
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--s-------~a~~~GLtaWRi  187 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--S-------KASSCGLTAWRI  187 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--c-------cccccCceEEEE
Confidence            877443211111112222333 46789999999985 55555554321      0000  0       111222333222


Q ss_pred             eCCCCcEEEEeeC-CC------ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          215 SGSNSRMFVSGSC-DS------TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       215 ~~~~~~~l~~~~~-dg------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      ..+...+..+... |+      +..+|.+-+. +...........|..+..+|||..|++...+|.|.+|++.+-+....
T Consensus       188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             cCCCCcEEEccccCccccccccccceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            2212222211111 11      1122322211 11111122456799999999999999999999999999998887777


Q ss_pred             eeeccC
Q 016522          288 YYQQHG  293 (388)
Q Consensus       288 ~~~~~~  293 (388)
                      +.....
T Consensus       267 W~~~eq  272 (282)
T PF15492_consen  267 WKQDEQ  272 (282)
T ss_pred             cchhhC
Confidence            655443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=2.6e-08  Score=83.31  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=101.5

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCC-cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDG-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD  143 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  143 (388)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++++.....+.+.|++++. 
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-  434 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-  434 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-
Confidence            5788899999988888899999999 899999877654 4556666789999999999999999999999999999876 


Q ss_pred             CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceEEEe
Q 016522          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVF  197 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~  197 (388)
                            ....-+...+-|+.+.|+|++ ..++-+--+|    .|+++|+.+++.....
T Consensus       435 ------v~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         435 ------VRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             ------eeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence                  444445566889999999986 6777665555    6899999988766553

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1e-10  Score=102.41  Aligned_cols=216  Identities=16%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             CceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (388)
                      .......+.||..+|+.+.|+|+. ..+++++.|-.|..||+.+... +.....-......++|+.....+++.+..+.|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence            334456788999999999999965 5889999999999999987653 44444445567889999876667777778899


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      .+||++.+..      +...+++|...|..+.|.......+.+++.||+|+.||...........    .....+|.--.
T Consensus       183 ~vwd~r~gs~------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r  252 (1081)
T KOG0309|consen  183 FVWDLRKGST------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGR  252 (1081)
T ss_pred             EEEeccCCCc------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceecc
Confidence            9999997653      5677888999999999987655678999999999999987653322221    12233343333


Q ss_pred             eeCCCCcE----------EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC----------CCEEEEeeCCCc
Q 016522          214 ISGSNSRM----------FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTGSDDGT  273 (388)
Q Consensus       214 ~~~~~~~~----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~  273 (388)
                      +.|-...+          +..-..+.....|+.....+++..+.+|...|....|-..          .-.|++-+.|..
T Consensus       253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            44322222          2122223334445555556889999999998877666432          236999999999


Q ss_pred             EEEEECCC
Q 016522          274 CRLFDIRT  281 (388)
Q Consensus       274 i~i~d~~~  281 (388)
                      +++|-+.+
T Consensus       333 lrlWpI~~  340 (1081)
T KOG0309|consen  333 LRLWPIDS  340 (1081)
T ss_pred             eEeeeccH
Confidence            99998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.21  E-value=3.7e-08  Score=80.37  Aligned_cols=223  Identities=19%  Similarity=0.185  Sum_probs=137.7

Q ss_pred             CCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (388)
                      +|+|..||..+|+.+.......  ....+. ..+++..+++++.++.+..||..+++       ....... ...+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~-------~~W~~~~-~~~~~~~~   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK-------VLWRFDL-PGPISGAP   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSE-------EEEEEEC-SSCGGSGE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCC-------EEEEeec-ccccccee
Confidence            6899999999999988886522  222211 23356777778899999999998765       3333222 11111112


Q ss_pred             EEeCCCceEEEeeCCCeEEEEecCCCceEEEe-ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE
Q 016522          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  244 (388)
Q Consensus       166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  244 (388)
                      ... + ..++.++.++.+..+|..+++..... ................+   .++.++++..++.|..+|++++ +.+-
T Consensus        73 ~~~-~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG-~~~w  146 (238)
T PF13360_consen   73 VVD-G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTG-KLLW  146 (238)
T ss_dssp             EEE-T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTT-EEEE
T ss_pred             eec-c-cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCC-cEEE
Confidence            222 2 35677778889999999999998874 21110111111222333   2567778888999999999988 5555


Q ss_pred             EEecccCC----------eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          245 TFHGHEGD----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       245 ~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      ........          +..-....++ .++.++.++.+..+|+.+++......  ..     .+.. ....++..|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~-----~~~~-~~~~~~~~l~~  217 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--IS-----GIYS-LPSVDGGTLYV  217 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS------ECE-CEECCCTEEEE
T ss_pred             EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CC-----CccC-CceeeCCEEEE
Confidence            55443322          1122222244 77777777764444999998664221  11     1222 13467788888


Q ss_pred             EecCCcEEEEEcccceEEee
Q 016522          315 GYSNGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~  334 (388)
                      ++.++.|..||+.+++....
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999999998754

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.19  E-value=6.5e-08  Score=85.00  Aligned_cols=264  Identities=13%  Similarity=0.040  Sum_probs=155.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      +..++.++.+|.+..+|..+|+.+...+...........  .+..++++..+|.+.-+|..+++       .........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGA-------VKWTVNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCC-------EeeeecCCC
Confidence            446777888999999999999988877654321111111  24567777888999999998865       222221110


Q ss_pred             cc-----eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeC-CCCcEEEEeeCCCc
Q 016522          159 GY-----VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISG-SNSRMFVSGSCDST  230 (388)
Q Consensus       159 ~~-----v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~~~l~~~~~dg~  230 (388)
                      ..     ...-...  + ..++.++.+|.+..+|..+++..............  .....+..+| -.+..++.++.+|.
T Consensus       191 ~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~  267 (394)
T PRK11138        191 PSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN  267 (394)
T ss_pred             CcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence            00     0001111  1 24677788999999999999876654211100000  0000111111 02345666778899


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  310 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (388)
                      +..+|..++. .+-...  ......+..  .+..++.++.+|.+..+|..+++.+.........    ...+...  .+.
T Consensus       268 l~ald~~tG~-~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~sp~v--~~g  336 (394)
T PRK11138        268 LVALDLRSGQ-IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR----LLTAPVL--YNG  336 (394)
T ss_pred             EEEEECCCCC-EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC----cccCCEE--ECC
Confidence            9999998873 322211  111112222  4667888889999999999998876543221111    1111222  255


Q ss_pred             EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCCCCeEEEccCCCeEEEec
Q 016522          311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +|++++.+|.++++|..+++.+....    .....+. ...+  .+..|+.++.||.|..+.
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~----~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQK----VDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEE----cCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            78889999999999999999887763    2222222 1122  244788889999987764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.15  E-value=1.7e-09  Score=97.08  Aligned_cols=183  Identities=21%  Similarity=0.237  Sum_probs=139.4

Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                      ...++-|+....+..+|+++.+.....     .-....+.-+..   +++++.+|...|+|.+-|.++. +.+.++..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-----~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTT-----NVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeee-----eccCCceEEEEe---cCcEEEeecccceEEeecCCcC-ceeeeeeccc
Confidence            345777888888999999998877766     233334555543   6689999999999999999988 8999999999


Q ss_pred             CCeeEEEEccCCCEEEEeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCc
Q 016522          251 GDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGD  320 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~  320 (388)
                      +.|..+..  .|+.|++++.         |.-|++||++..+.+..+....++      .-+.|.|.- ..+++++..|.
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------QFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------hhhhhcccccceEEEEecccc
Confidence            99976655  6889998875         556899999988777665444332      456677764 37888999999


Q ss_pred             EEEEEcc---cc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          321 CYVWDTL---LA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       321 i~i~d~~---~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ..+-|..   +. ..+..+    ......+..++++++|+.|+.|..+|.|.+|....
T Consensus       290 ~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             eeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            9999943   22 112222    34455699999999999999999999999998543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.15  E-value=1e-07  Score=83.72  Aligned_cols=267  Identities=14%  Similarity=0.056  Sum_probs=155.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-E-E-----EEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-V-M-----TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v-~-----~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .+..+++++.+|.+.-+|..+|+.+......... . .     .+.-.|  .+..++.++.+|.+.-+|.++++.     
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-----  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-----  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence            3557888888999999999999988776543310 0 0     000011  356777888899999999988662     


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                        ....... +.+.+--...+  ..++.+..+|.+..+|..+++..................+....  + ..++.++.+
T Consensus       143 --~W~~~~~-~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~  214 (394)
T PRK11138        143 --AWQTKVA-GEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDN  214 (394)
T ss_pred             --cccccCC-CceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCC
Confidence              1111111 11211111112  35777888999999999999988877421100000000111111  2 346667778


Q ss_pred             CceEEEECCCCCcceEEEec-ccC------CeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          229 STARLWDTRVASRAVRTFHG-HEG------DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~-~~~------~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      |.+..+|..++. ..-.... ...      ....+.-+|  .+..++.++.+|.+..+|..+++.+.......       
T Consensus       215 g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------  286 (394)
T PRK11138        215 GRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-------  286 (394)
T ss_pred             CEEEEEEccCCh-hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence            999999988773 2222110 000      011111223  35567778889999999999998776543211       


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ...+.  ..+..+++++.+|.++.+|..+++.+......  .+ ....+...  .+.+|+.++.||.|.+.+.
T Consensus       287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LH-RLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CC-CcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            11122  24567888889999999999999887654211  11 11122222  2446777888888877664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.13  E-value=2.7e-09  Score=95.83  Aligned_cols=182  Identities=14%  Similarity=0.174  Sum_probs=142.1

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      +..++.|+-...+..+|+.+.+.........+.|+-++  .+++++.+|...|+|.+-|..+.+       ....+..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~-------~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE-------TIHTFDAHS  217 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc-------eeeeeeccc
Confidence            34667777777888889988888777776665566555  468899999999999999998754       788999999


Q ss_pred             cceEEEEEEeCCCceEEEeeC---------CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522          159 GYVSCCQYVPDEDTHLITSSG---------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  229 (388)
                      +.|.++...   +++|+++|.         |..|+|||++....+..+.      ......-+.|+|.-...+++++..|
T Consensus       218 ~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~------~~~~P~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  218 GSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ------FPYGPQFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             cceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcc------cccCchhhhhcccccceEEEEeccc
Confidence            999887765   367888765         5568999999877666552      2223356778887888899999999


Q ss_pred             ceEEEE---CCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          230 TARLWD---TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       230 ~i~i~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      ...+-|   +.++...+..+......+..++++++++.++.|..+|.|.+|.
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            999999   4444333445555556699999999999999999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.11  E-value=2.5e-10  Score=63.45  Aligned_cols=38  Identities=37%  Similarity=0.866  Sum_probs=36.5

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN   95 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd   95 (388)
                      ++++++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=6.2e-10  Score=88.94  Aligned_cols=160  Identities=17%  Similarity=0.233  Sum_probs=119.6

Q ss_pred             EEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-
Q 016522          115 CAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-  191 (388)
Q Consensus       115 ~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-  191 (388)
                      ++|+-  .|-. ++.+.+-.+-+-+++++-        ...+. .++.|.++.|...+ +++..|+.+|.|..+|++.+ 
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecc
Confidence            35553  2334 445556678888888743        22233 56778888898764 78999999999999999876 


Q ss_pred             ----ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEE--EEccCC
Q 016522          192 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTV--KFFPDG  262 (388)
Q Consensus       192 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~--~~~~~~  262 (388)
                          .+...      .-|...|+++..-..++.+|++.+.+|+|.+||++.. +.   +..+.+|...-.-+  -..+..
T Consensus       286 qG~~~~a~r------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~ee  358 (425)
T KOG2695|consen  286 QGNGWCAQR------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEE  358 (425)
T ss_pred             cCCCcceEE------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccccccc
Confidence                23333      3688999999887767788999999999999999976 44   78888886643333  334566


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      ..+++++.|...+||.++.++.+.++....
T Consensus       359 g~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  359 GSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            788889999999999999999888775543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=4.4e-09  Score=85.85  Aligned_cols=156  Identities=13%  Similarity=0.171  Sum_probs=106.8

Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceee
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQ  286 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~  286 (388)
                      +..++ .+.+++++..+....+++++...+..+...  .-...-+++.|..+......+..-|   .+.+|....+....
T Consensus        68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            33444 788899888888888888776533121111  1122344556655555555544444   44555544433322


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                      .      .+|.+.++.++++||+++|+++..|+.|++-.+.....+..+.   -+|..-|..++.-++ ..|++||.|++
T Consensus       147 ~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---lGH~eFVS~isl~~~-~~LlS~sGD~t  216 (390)
T KOG3914|consen  147 I------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---LGHKEFVSTISLTDN-YLLLSGSGDKT  216 (390)
T ss_pred             h------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---cccHhheeeeeeccC-ceeeecCCCCc
Confidence            2      3455679999999999999999999999998877665555543   689999999999765 45899999999


Q ss_pred             EEEeccceeeee
Q 016522          367 LKVSLHYYIFVL  378 (388)
Q Consensus       367 v~iw~~~~~~~~  378 (388)
                      |++|++.....+
T Consensus       217 lr~Wd~~sgk~L  228 (390)
T KOG3914|consen  217 LRLWDITSGKLL  228 (390)
T ss_pred             EEEEecccCCcc
Confidence            999998765544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.05  E-value=8.3e-07  Score=72.06  Aligned_cols=231  Identities=18%  Similarity=0.187  Sum_probs=143.9

Q ss_pred             EEEEEECC-CCCEEEEeeCCC-cEEEEeCCCCCCCC-CCCceeEEecccccceEEEEEEeCCCceEEEe-----eCCCeE
Q 016522          112 VMTCAFSP-TGQSVACGGLDS-VCSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTC  183 (388)
Q Consensus       112 v~~~~~~~-~~~~l~~~~~dg-~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v  183 (388)
                      ...++.+| .+..++.+-.-| ...+||..++.... ...+.-+.+.+|      -.|+++|. +|++.     ...|.|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRGVI   79 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcEEE
Confidence            44677788 455666666655 46788888765211 011122344555      48999985 45553     446899


Q ss_pred             EEEecC-CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee------------------CCCceEEEECCCCCcceE
Q 016522          184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS------------------CDSTARLWDTRVASRAVR  244 (388)
Q Consensus       184 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~  244 (388)
                      -|||.. +-..+..+     ..+.-....+.+.| ++..|+++.                  .+..+...|..++ ..+.
T Consensus        80 gVyd~~~~~~ri~E~-----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~  152 (305)
T PF07433_consen   80 GVYDAARGYRRIGEF-----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLE  152 (305)
T ss_pred             EEEECcCCcEEEeEe-----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceee
Confidence            999999 55777777     56666677888888 665555532                  2234566666666 4444


Q ss_pred             E--E--ecccCCeeEEEEccCCCEEEEeeCCCc-------EEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCE
Q 016522          245 T--F--HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       245 ~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~  311 (388)
                      .  +  ..|...|..+++.++|..++..-..|.       |-+++.  +..+..+....  .......+-++++++++.+
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence            4  3  336778999999999876655543332       333332  22222222111  1122346899999999998


Q ss_pred             EEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          312 LFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       312 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      +++.+- .+.+.+||..+++.+...      .-..+..++-.+++ ++++.+...
T Consensus       231 ia~tsPrGg~~~~~d~~tg~~~~~~------~l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAATGRLLGSV------PLPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             EEEECCCCCEEEEEECCCCCEeecc------ccCceeeeeecCCc-eEEeCCCcc
Confidence            876665 568999999999988765      22356677777666 666666544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.04  E-value=1.4e-06  Score=70.73  Aligned_cols=233  Identities=15%  Similarity=0.164  Sum_probs=151.7

Q ss_pred             eeEEEeCC-CCCeEEEEeCCCc-EEEEECCCCCeeeEeeeCCccE--EEEEECCCCCEEEEeeC-----CCcEEEEeCCC
Q 016522           70 VYSLDWTS-ERNRIVSASQDGR-LIVWNALTSQKTHAIKLPCAWV--MTCAFSPTGQSVACGGL-----DSVCSIFNLNS  140 (388)
Q Consensus        70 v~~~~~~~-~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~  140 (388)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34778888 5556777777664 5789999999888776655432  24579999999999744     58999999984


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----------------CCCeEEEEecCCCceEEEeeccccc
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------GDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      .      +.....+..|.-.-..+.+.|+++.+++.-+                 .+-.+...|..+++.+....... .
T Consensus        87 ~------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~  159 (305)
T PF07433_consen   87 G------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-D  159 (305)
T ss_pred             C------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-c
Confidence            2      2345566666656667889998754433321                 23356667777777766642210 2


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCC-------ceEEEECCCCCcceEEE-------ecccCCeeEEEEccCCCEEEEee
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      .|...|..+++.+ ++..++..-..|       .|-+++...   .+..+       ..-.+.+-+|++++++.++++.+
T Consensus       160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            4677899999987 655555443333       233443332   12222       22346788999999998886655


Q ss_pred             -CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522          270 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  322 (388)
Q Consensus       270 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (388)
                       ..+.+.+||..++..+......       -++.++-.+++ ++++. ..|.+.
T Consensus       236 PrGg~~~~~d~~tg~~~~~~~l~-------D~cGva~~~~~-f~~ss-G~G~~~  280 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLLGSVPLP-------DACGVAPTDDG-FLVSS-GQGQLI  280 (305)
T ss_pred             CCCCEEEEEECCCCCEeeccccC-------ceeeeeecCCc-eEEeC-CCccEE
Confidence             6778999999999888766442       26777777666 55444 344433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.6e-08  Score=81.48  Aligned_cols=261  Identities=11%  Similarity=0.092  Sum_probs=152.9

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEEEee
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGG  128 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  128 (388)
                      .+++.+++....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+. .++++|.
T Consensus       177 ~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  177 KLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             EeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec
Confidence            356667777778889999999999999776 7889999999999999999999888888 669999998765 6778888


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      .+|.|.|||++.+.....++    .-.-...+|..++..+.+     +.+++....+  +..|++.-.......  ....
T Consensus       256 ~nG~VlvyD~R~~~~~~~e~----~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~--vlel  327 (463)
T KOG1645|consen  256 QNGMVLVYDMRQPEGPLMEL----VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC--VLEL  327 (463)
T ss_pred             cCceEEEEEccCCCchHhhh----hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc--cccc
Confidence            89999999999865321111    011122344444433321     1233333332  455655432111111  0013


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCc------eEE-EECCCCCcceEEEecc-cCCe------eEEEEccCCCEEEE-e
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDST------ARL-WDTRVASRAVRTFHGH-EGDV------NTVKFFPDGNRFGT-G  268 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~~~~~-~~~i------~~~~~~~~~~~l~~-~  268 (388)
                      +..+.+.++.+.+..+..+++.-.+..      +-. -|.+.+......-..+ .++-      ..+.-.++.++++. +
T Consensus       328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g  407 (463)
T KOG1645|consen  328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG  407 (463)
T ss_pred             CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence            445667777777755555555443210      100 1111111111111111 1110      11112234455544 4


Q ss_pred             eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCC-EEEEEecCCcEEEEEcc
Q 016522          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGR-LLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~~dg~i~i~d~~  327 (388)
                      ...+.+.+||..+.+..+.+...      .++..++... ++. +|++- .|..++||..+
T Consensus       408 d~tn~lil~D~~s~evvQ~l~~~------epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  408 DSTNELILQDPHSFEVVQTLALS------EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             CCcceeEEeccchhheeeecccC------cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            55678999999999988887553      2467766543 333 66555 45578888643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.02  E-value=3.1e-07  Score=85.67  Aligned_cols=247  Identities=13%  Similarity=0.123  Sum_probs=143.3

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      .+.|.++.|..+.+.++.+..+|.|.+-|.++......- .-...|.+++|+||++.++..+..+++.+-.-.-..  ..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~--i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP--IA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc--hh
Confidence            358999999999999999999999999988776544333 334559999999999999999888877665432100  00


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-  225 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-  225 (388)
                      +.+.... ....+....+-|-....  -+-|+ .|.....+..........     ....+.=++++|-. ++.++++. 
T Consensus       145 E~~L~~d-~~~~sk~v~VGwGrkeT--qfrgs-~gr~~~~~~~~~ek~~~~-----~~~~~~~~~IsWRg-Dg~~fAVs~  214 (1265)
T KOG1920|consen  145 EKPLDAD-DERKSKFVNVGWGRKET--QFRGS-EGRQAARQKIEKEKALEQ-----IEQDDHKTSISWRG-DGEYFAVSF  214 (1265)
T ss_pred             ccccccc-cccccccceecccccce--eeecc-hhhhcccccccccccccc-----hhhccCCceEEEcc-CCcEEEEEE
Confidence            0000000 00011122233332210  11111 121111111111100000     11223345688987 88888883 


Q ss_pred             ----eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          226 ----SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       226 ----~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                          .....|++||.. + ..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.- +|-.-..+...... ...
T Consensus       215 ~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~-de~  290 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL-DEK  290 (1265)
T ss_pred             EeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc-ccc
Confidence                323789999976 2 22222222334456799999999998864   4567889884 34333333322221 222


Q ss_pred             CeEEEEecCCCCEEEE---EecCCcEEEEEcccce
Q 016522          299 HVTSIAFSISGRLLFA---GYSNGDCYVWDTLLAK  330 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~  330 (388)
                      .+..++|+.++..|++   ......|++|-+.+..
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            3899999999999988   4444569999887644

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=3e-08  Score=88.75  Aligned_cols=279  Identities=13%  Similarity=0.143  Sum_probs=160.5

Q ss_pred             eEEEeCCCCCeEEEEe----CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           71 YSLDWTSERNRIVSAS----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        71 ~~~~~~~~~~~l~t~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      +-..|+|...++++++    ..|.|.||- ++|++.....-+- .+++++|+|..-.|+.|-.-|.+.+|...+..    
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce-ehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence            3457899888888776    468898885 5666544333221 26779999999999999999999999988744    


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE----------------Eeecccc--------
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS----------------VFGGEFQ--------  202 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----------------~~~~~~~--------  202 (388)
                         .......|..+|..+.|+++| ..++++..-|.|.+|.......+.                .+.....        
T Consensus        93 ---~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   93 ---THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             ---eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence               445566799999999999998 689999999999999765211111                1100000        


Q ss_pred             ----cCCccCeE-EEEe-------------eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCE
Q 016522          203 ----SGHTADVL-SVSI-------------SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       203 ----~~~~~~i~-~~~~-------------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                          .+....+- -.-|             .| ++..|+.++.+|+|+-.|-...  ........ +. ..+-|.+...-
T Consensus       169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g~--~~~V~k~d-S~-vQmLf~~~~ea  243 (1416)
T KOG3617|consen  169 KAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNGR--QRTVHKLD-SE-VQMLFMGYCEA  243 (1416)
T ss_pred             hhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCCc--EEEEEEcc-ch-HHHHHhcccce
Confidence                00000000 0001             12 5667778888898887774422  22222111 11 11122221111


Q ss_pred             EEEeeCCCcEEEEECC----------------CCce-----------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          265 FGTGSDDGTCRLFDIR----------------TGHQ-----------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~----------------~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      +++.-.+-.+.++-+.                .|..           +.......+......+++++++..+..|+.|..
T Consensus       244 i~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~  323 (1416)
T KOG3617|consen  244 ISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTK  323 (1416)
T ss_pred             EEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEeccc
Confidence            2211111111111110                0000           000000011122346999999999999999999


Q ss_pred             CCcEEEEEcccc-------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          318 NGDCYVWDTLLA-------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       318 dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      .|.+.+|--...       .....+... ....+.|+.+.|.|--..++.-+...
T Consensus       324 ~gnv~~w~~v~~~f~g~p~~d~w~l~~~-~e~~g~I~~i~Wg~~k~~~avn~~~~  377 (1416)
T KOG3617|consen  324 EGNVTIWLDVNKGFQGDPTIDVWTLNGK-RESLGKISLIRWGPIKSTAAVNTEED  377 (1416)
T ss_pred             CCcEEEeeecCccccCCCCcceEEecCc-hhhccceEEEEeccccchhhhhhhhh
Confidence            999999953221       223333221 23457899999998666666555443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=99.01  E-value=2.1e-07  Score=80.16  Aligned_cols=280  Identities=11%  Similarity=0.099  Sum_probs=144.4

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC--C
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G  146 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~  146 (388)
                      .|+.+.|.++..-|++|...|.|.||.+...+...  ......-....+.+-      ...++.-.+-|+.......  .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58999999998899999999999999875543322  001111111111110      0111222344444322111  1


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc---ccCCccCeEEEEeeC----CC-
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISG----SN-  218 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~----~~-  218 (388)
                      .+.....+....++|++++.+.-|  +++.|..+|.+.|.|++....+..-....   .......++++.|.-    .+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            133445556668999999998754  89999999999999998887776632211   123455677887762    12 


Q ss_pred             --CcEEEEeeCCCceEEEECCC-C-Ccce----EEEecccCCeeEEE-EccC-----------------C---CEEEEee
Q 016522          219 --SRMFVSGSCDSTARLWDTRV-A-SRAV----RTFHGHEGDVNTVK-FFPD-----------------G---NRFGTGS  269 (388)
Q Consensus       219 --~~~l~~~~~dg~i~i~d~~~-~-~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~  269 (388)
                        .-.+++|+..|.+.+|.+.- . ....    .....+.++|..+. ++.+                 +   .-++...
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence              25788999999999998752 1 1111    11123456665554 3221                 0   1234444


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec-----CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  344 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (388)
                      .+..++++...+.+.........     .....+++-     ..+..|++-..+|.+++|.+..-+.+..+.........
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~-----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDP-----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             cccceEEEeCCCCcccceeeccc-----cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            46789999998877766554211     113334442     35668888889999999999998888777543223334


Q ss_pred             CeeEEEECCCCCeEEEccC
Q 016522          345 RITCLGLSADGSALCTGSW  363 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~  363 (388)
                      .+....++++|..++-.+.
T Consensus       308 ~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SS
T ss_pred             cccccEECCCCCEEEEeCc
Confidence            4566777888887766553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.98  E-value=8e-06  Score=67.30  Aligned_cols=268  Identities=15%  Similarity=0.170  Sum_probs=160.5

Q ss_pred             CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCCc-cE-----
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-WV-----  112 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~-~v-----  112 (388)
                      ...++....+.+-.+.+-  -.-.+..+|+++.+++++          ..-.|.+||..+......+..+.. ..     
T Consensus        19 v~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   19 VYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             EEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            444555555555544432  233466789999888764          234799999999988887776654 22     


Q ss_pred             -EEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          113 -MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       113 -~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                       ...+++.+++++++...  --.|.|.|+...+       ....+...    -|....|.++.-+.+-+.||.+.-..+.
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-------vv~ei~~P----GC~~iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-------VVGEIDTP----GCWLIYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEEGT----SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCc-------eeeeecCC----CEEEEEecCCCceEEEecCCceEEEEEC
Confidence             23567888888777543  3568888887744       33333221    1233345445568899999999988887


Q ss_pred             -CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCCeeEEE
Q 016522          190 -TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVK  257 (388)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~  257 (388)
                       .|+........+......-+..-.+.. .+..++--+.+|.|+-.|+..... ....+..          -.+.-.-++
T Consensus       166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  166 ADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             STSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             CCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence             455443332222122222222334444 333444467789999988875521 1112211          122345588


Q ss_pred             EccCCCEEEEeeCC----------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEEEE
Q 016522          258 FFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD  325 (388)
Q Consensus       258 ~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d  325 (388)
                      +++..+.|++....          ..|.++|+.+++.+..+....      ++.++..+.+.+ +|++.+ .++.+.+||
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            88766666654321          148899999999998886543      277899998877 665544 578999999


Q ss_pred             cccceEEeecc
Q 016522          326 TLLAKVVLNLG  336 (388)
Q Consensus       326 ~~~~~~~~~~~  336 (388)
                      ..+++.+..+.
T Consensus       319 ~~tGk~~~~~~  329 (342)
T PF06433_consen  319 AATGKLVRSIE  329 (342)
T ss_dssp             TTT--EEEEE-
T ss_pred             CcCCcEEeehh
Confidence            99999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=3.9e-10  Score=100.92  Aligned_cols=223  Identities=21%  Similarity=0.273  Sum_probs=157.1

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +...++..+....+|++|+-+.++|++|+..|.|++|++.++.       ......+|...|+-+.-+.+|..+|.+++.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCCcceeeeeccc
Confidence            3445666777889999999999999999999999999999976       456678999999999999998766665555


Q ss_pred             CC-eEEEEecCC-CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCee
Q 016522          180 DQ-TCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVN  254 (388)
Q Consensus       180 dg-~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~  254 (388)
                      .. -..+|++.. +.....|         ..-.++.|+. ....-+.|+......+||+.+.......+.+   ....-+
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf---------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF---------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             cCchHHHhccccccCccccc---------cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence            54 567899865 2222222         3445777876 3444455666678999999988433332332   222347


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (388)
                      +..|+|+..+++-   ||  .+||++..+.+..+.....      -..-.|+|+|..++.-+     .|||+++.+.+..
T Consensus      1235 ~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~------~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1235 LAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTD------YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             ccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhee------cccccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence            7899998887663   44  4799998877766644321      23346999999887764     4899999888776


Q ss_pred             ccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          335 LGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      ...+      .-..+.|+..|..+...
T Consensus      1299 VP~L------dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL------DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             Cccc------cceEEEeccCccchhhh
Confidence            6322      22466788777765543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.2e-07  Score=84.45  Aligned_cols=187  Identities=16%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      .+.|++++  +++|+.|..+|.|++++.....         .....|...      ..+| .++++|+.||+|.|-.+-+
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCcc---------ccccccccc------ccCC-ceEEEecCCCcEEEeeccC
Confidence            35566554  6789999999999999987621         233334332      3344 7899999999999999888


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCC----CCcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEE
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      ......+      ....++.+++++|+    ..+.+++|+.-| +.++.-+-.+.. -..+....++|.++.|.  |+++
T Consensus       103 ~~~~~~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lI  173 (846)
T KOG2066|consen  103 DDEITQY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLI  173 (846)
T ss_pred             CccceeE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEE
Confidence            8777765      56678999999994    357899999888 777764322111 12455667899999995  8888


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      |-++.+| |++||+.+++.+..+...... ........+.|.++. .|+.|-.| +|+|..++
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            8887776 899999998887776554322 112234567777654 55566444 78888876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=9.1e-07  Score=79.72  Aligned_cols=209  Identities=10%  Similarity=0.111  Sum_probs=137.4

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-EEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPT  142 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~  142 (388)
                      .|+|  |++.+..+|.|+.+|.|.+.+ ..-+.+..++.+... |..+....+..+|++.+.|+     .++||+++...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4554  567788999999999998887 334445777777666 44444444446777776654     58999998754


Q ss_pred             CCCCCCcee--EEecc-----cccceEEEEEEeCCCceEEEeeCCCeEEEEecC----CCceEEEeecccccCCccCeEE
Q 016522          143 DKDGNLPVS--RMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       143 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~----~~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      .... ..+.  .....     ...++.+++.+.+ -..+++|-.+|.|..+.-.    .+.....     ......+|+.
T Consensus       104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-----~~~~~~pITg  176 (933)
T KOG2114|consen  104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDY-----SHRGKEPITG  176 (933)
T ss_pred             CCCC-cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceee-----eccCCCCcee
Confidence            2221 1122  12222     3567888999887 4789999999999988532    1121221     1567789999


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.+..+....+++++ ...|.+|.+.........+..|..+++|.++++....+++++. ..+.+|+....++...+.
T Consensus       177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            999874444234433 3579999988553235557888889999999975554555543 469999987655554443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.92  E-value=1.5e-05  Score=66.99  Aligned_cols=301  Identities=17%  Similarity=0.166  Sum_probs=146.7

Q ss_pred             CCCCceeeeccccccCCeeEE-----EeCCCCCeEEEEe-CCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522           53 GPTDLVCCRTLQGHAGKVYSL-----DWTSERNRIVSAS-QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (388)
Q Consensus        53 ~~~~~~~~~~l~~h~~~v~~~-----~~~~~~~~l~t~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (388)
                      +|.+...+..|..+...-..+     +|.++|+.|+.++ .||  .+.+-|+.+++..+...+.........++|+++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            445555555555443322222     5677887665544 455  56666888887776655443333345677888888


Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----------------------CCC
Q 016522          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------------GDQ  181 (388)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------------~dg  181 (388)
                      +-...+..+.-.|+++.+       ....+.-....+-...|..+.+...+.+.                       -.+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e-------~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~  168 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLE-------ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC  168 (386)
T ss_dssp             EEEETTTEEEEEETTT---------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred             EEEECCCeEEEEECCcCc-------EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence            766666788888988854       33444444555555666543222233321                       123


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---C-ceEEEECCCCCcceEEEecccC--CeeE
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---S-TARLWDTRVASRAVRTFHGHEG--DVNT  255 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~--~i~~  255 (388)
                      .|.-.|+.+++....+      .....+..+.++|.+..+++-|-+.   . .-++|=++........+..+..  .+..
T Consensus       169 ~i~~idl~tG~~~~v~------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH  242 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVF------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH  242 (386)
T ss_dssp             EEEEEETTT--EEEEE------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred             eEEEEECCCCceeEEE------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence            5666788887766665      3456678899999888777776542   2 1367766654444444433322  3444


Q ss_pred             EEEccCCCEEEEee-----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----------
Q 016522          256 VKFFPDGNRFGTGS-----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----------  319 (388)
Q Consensus       256 ~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------  319 (388)
                      =-|.|||..|.--+     .+..|.-+|+.+++.......   +    ....+-.++||++++-=+.|.           
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~  315 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---P----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK  315 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--------SEEEEEE-TTSSEEEEEE--------------
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---C----ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence            56888988766432     244577788888765443222   1    255666788998876533332           


Q ss_pred             -----cEEEEEcccceEEeecc--C---CCCCcCC-CeeEEEECCCCCeEE-EccCCCeEEEeccc
Q 016522          320 -----DCYVWDTLLAKVVLNLG--S---LQNSHEG-RITCLGLSADGSALC-TGSWDTNLKVSLHY  373 (388)
Q Consensus       320 -----~i~i~d~~~~~~~~~~~--~---~~~~~~~-~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~  373 (388)
                           -|+++++..+.......  .   ...++.. .=-...|+|||+.++ ++...|...||...
T Consensus       316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence                 46678877665432111  0   0011111 113568999998665 55568888888654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.92  E-value=2.7e-06  Score=69.38  Aligned_cols=218  Identities=16%  Similarity=0.119  Sum_probs=129.5

Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      +|.|..||..+++       ......-  ......+..... + ..+++++.++.|..||..+++....+...  .....
T Consensus         2 ~g~l~~~d~~tG~-------~~W~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~~   70 (238)
T PF13360_consen    2 DGTLSALDPRTGK-------ELWSYDLGPGIGGPVATAVPD-G-GRVYVASGDGNLYALDAKTGKVLWRFDLP--GPISG   70 (238)
T ss_dssp             TSEEEEEETTTTE-------EEEEEECSSSCSSEEETEEEE-T-TEEEEEETTSEEEEEETTTSEEEEEEECS--SCGGS
T ss_pred             CCEEEEEECCCCC-------EEEEEECCCCCCCccceEEEe-C-CEEEEEcCCCEEEEEECCCCCEEEEeecc--ccccc
Confidence            5778888887654       2222221  011222112223 3 45777789999999999999988887431  11111


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE-EecccC---CeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEG---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      .   ...   .+..+++++.++.++.+|..++ +..-. ......   ..........+..++++..++.|..+|+.+|+
T Consensus        71 ~---~~~---~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   71 A---PVV---DGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             G---EEE---ETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             e---eee---cccccccccceeeeEecccCCc-ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            1   122   3345566667889999998888 44443 232211   11222233347888888889999999999999


Q ss_pred             eeeEeeeccCCCCCCC------eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe
Q 016522          284 QLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  357 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (388)
                      .+......... ....      +..-....++ .+++++.++.+.-+|+.+++.+...    .  ...+..+ ...++..
T Consensus       144 ~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~----~--~~~~~~~-~~~~~~~  214 (238)
T PF13360_consen  144 LLWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK----P--ISGIYSL-PSVDGGT  214 (238)
T ss_dssp             EEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE----C--SS-ECEC-EECCCTE
T ss_pred             EEEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe----c--CCCccCC-ceeeCCE
Confidence            98877663221 1111      1222222344 7777777886444499999976543    2  2223332 3356778


Q ss_pred             EEEccCCCeEEEeccce
Q 016522          358 LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       358 l~s~~~dg~v~iw~~~~  374 (388)
                      |+.++.++.|..|+...
T Consensus       215 l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  215 LYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEEETTTEEEEEETTT
T ss_pred             EEEEeCCCEEEEEECCC
Confidence            88888999999998654

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.92  E-value=8.8e-07  Score=82.79  Aligned_cols=242  Identities=13%  Similarity=0.109  Sum_probs=142.4

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..|.++.|..++..++.+...|.|.+-|.++..        ......-.+.|.+++|+|++ ..++..+..+++.+.+- 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~-  138 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK-  138 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-
Confidence            579999999999999999999999999877632        23333446789999999997 56777777777765432 


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      +-.++...+........+....+-|-. ....| -|+ .|.....+.....+.......+. .=++|+|--||+++++..
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             cccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEE
Confidence            222222111100011222233333332 11111 111 22222222221111111111122 235689999999999843


Q ss_pred             -----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe---cCCcEEEEEcccceEEeeccCCCCC
Q 016522          270 -----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS  341 (388)
Q Consensus       270 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  341 (388)
                           ....|++||-. +..-..-..     ....-.+++|-|.|..+++-.   +|+.|.+|.- +|-....+......
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se~-----~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~  287 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSEP-----VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL  287 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccCc-----ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc
Confidence                 23689999966 432222111     112246899999999998853   4557999984 33333333222133


Q ss_pred             cCCCeeEEEECCCCCeEEE---ccCCCeEEEecc
Q 016522          342 HEGRITCLGLSADGSALCT---GSWDTNLKVSLH  372 (388)
Q Consensus       342 ~~~~v~~~~~~~~~~~l~s---~~~dg~v~iw~~  372 (388)
                      ...+|..++|+.++..|++   ......|++|..
T Consensus       288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             cccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            4455999999999999988   666666999974

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=6e-07  Score=80.83  Aligned_cols=205  Identities=13%  Similarity=0.142  Sum_probs=132.1

Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-----eEEEEecCC
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITT  190 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~  190 (388)
                      +|++.+..++.|+.+|.|.+++-.-        .....++.+...+...-|.-++..+|++.+.|+     .|+|||++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            4688899999999999988877543        233556666655333344444446777777665     489999875


Q ss_pred             C------ceE---EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC---CcceEEEecccCCeeEEEE
Q 016522          191 G------LRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVKF  258 (388)
Q Consensus       191 ~------~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i~~~~~  258 (388)
                      .      .+.   +.+.... .....++.+++++. +-+.+|+|-.+|.|..+.-+-.   .........-..+|+.+++
T Consensus       102 ~~~n~sP~c~~~~ri~~~~n-p~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKN-PTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cCCCCCcceeeeeeeeccCC-CCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            4      222   1221111 23467788999997 6889999999999999853221   1112222234568999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..+++.++....-..|.+|.+....+.....    .++...+.|..+++....+++++ +..+.+||.....+-..+
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l----d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVL----DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeee----ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            9888873333334579999988443222212    22334588888887666455553 346999998877666666

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.5e-07  Score=78.31  Aligned_cols=272  Identities=12%  Similarity=0.086  Sum_probs=178.7

Q ss_pred             cCCCCCcccCCCC---ceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           44 SQGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        44 ~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      +.++-..-|.+..   ...+..+..|.+.|.+++.+-++.++.|.+. |..++++|+++-..+..++...-+=.+..+..
T Consensus        27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s  106 (558)
T KOG0882|consen   27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS  106 (558)
T ss_pred             ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC
Confidence            4455556676655   4667788899999999999999999999777 99999999988766544443332222222222


Q ss_pred             CC---CEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----
Q 016522          120 TG---QSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----  190 (388)
Q Consensus       120 ~~---~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----  190 (388)
                      .|   ..++++ -.+|.+.++|-....     .+....-.-|..+|.++.+++.++ .+++....|.|.-|..+.     
T Consensus       107 kGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfP  180 (558)
T KOG0882|consen  107 KGDKISLIAVSLFKSGKIFVVDGFGDF-----CQDGYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFP  180 (558)
T ss_pred             CCCeeeeEEeecccCCCcEEECCcCCc-----CccceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCc
Confidence            33   234433 457899999976533     124445567999999999999874 588888899999998873     


Q ss_pred             -CceEEEeecc----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-------------------
Q 016522          191 -GLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------------------  246 (388)
Q Consensus       191 -~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------  246 (388)
                       ......+..+    ..........++.++| .+..+.+-+.|..|++++.+++ +.++.+                   
T Consensus       181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~  258 (558)
T KOG0882|consen  181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMH  258 (558)
T ss_pred             cccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhccccccccce
Confidence             1111111000    0023456678999999 8888898889999999998876 322222                   


Q ss_pred             -------------ecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------------CCCCC
Q 016522          247 -------------HGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPH  299 (388)
Q Consensus       247 -------------~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~  299 (388)
                                   ..|.. .-+.+.|...+++|+-|+.=| |++.++.++.....+-.....             .+...
T Consensus       259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~  337 (558)
T KOG0882|consen  259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAA  337 (558)
T ss_pred             eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchh
Confidence                         11222 235678888899999888765 899999988777665322110             00000


Q ss_pred             -------eEEEEecCCCCEEEEEecCCcEEEE
Q 016522          300 -------VTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       300 -------i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                             =..+.+-+|-..++++-...++++|
T Consensus       338 ~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  338 LEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                   0112245555677777777788887

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.4e-07  Score=82.62  Aligned_cols=161  Identities=17%  Similarity=0.217  Sum_probs=113.6

Q ss_pred             cccccCCeeEEEeCCC-------------CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC-----CCEE
Q 016522           63 LQGHAGKVYSLDWTSE-------------RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-----GQSV  124 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~-------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l  124 (388)
                      |..|.+.|.-..+.-+             |.+++|++.||+|.|..+.+.+...++..+ .++.+++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence            3446666665555444             899999999999999999998888777655 45999999997     5789


Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      ++|+.-| +.++.-+--...     ....+....++|.++.|..   ++++-+..+| |++||+.+++.+..++.+....
T Consensus       133 v~GG~ag-lvL~er~wlgnk-----~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~  202 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNK-----DSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV  202 (846)
T ss_pred             eecCcce-EEEehhhhhcCc-----cceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC
Confidence            9999988 777664421111     1124566679999999983   6788888777 8999999998887775432111


Q ss_pred             -CccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          205 -HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       205 -~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                       .......+.|.+  ...|+.|= ..+|++..++
T Consensus       203 R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  203 RPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             CcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence             122234677775  34455554 4578888887

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=5.8e-07  Score=79.21  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=108.0

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      ..|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++..++|.|+..|.|.++-+...... .
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR-D  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-c
Confidence            344444556677899999999999999976665443222 24455667778999999999999999999998873322 2


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                      .......-..|+..|++++|++++ ..+++|...|+|..-.+... ....+.........+.|..+...  ++.+|++..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecc--cceehHhhh
Confidence            222222234488999999999997 67999999999998887762 11111111113556778888776  344444333


Q ss_pred             CCCceEEEECC
Q 016522          227 CDSTARLWDTR  237 (388)
Q Consensus       227 ~dg~i~i~d~~  237 (388)
                      .  .-.+++..
T Consensus       189 ~--r~~Lc~tE  197 (726)
T KOG3621|consen  189 T--RCILCQTE  197 (726)
T ss_pred             h--hhheeecc
Confidence            2  23344544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.6e-08  Score=56.01  Aligned_cols=38  Identities=47%  Similarity=0.941  Sum_probs=36.0

Q ss_pred             cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      +++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=4.4e-09  Score=91.05  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=133.0

Q ss_pred             CeeEEEeCCCC--CeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECC-CCCEEEEee----CCCcEEEEeCC
Q 016522           69 KVYSLDWTSER--NRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSP-TGQSVACGG----LDSVCSIFNLN  139 (388)
Q Consensus        69 ~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~vw~~~  139 (388)
                      .+.|+++.-+.  ..++.|..+|.|.+-......-  -...+.+..+.++++|++ |.+.||+|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            56677766543  4788899999999987754332  234466777899999998 556777763    35689999999


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      +.-....+-+....  +......+++|..+ ..++++|.....+.++|++.......      .-....+..+.+.|...
T Consensus       138 s~ltvPke~~~fs~--~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  138 SLLTVPKESPLFSS--STLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccCCCcccccccc--ccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhh------hhhhhhcccceecCCCC
Confidence            86321111111111  13344557888865 46788898888999999984322111      12334566778888777


Q ss_pred             cEEEEeeCCCceEEEE-CCCCCcceEEEecccC----CeeEEEEccC-CCEEEEee-CCCcEEEEECCC
Q 016522          220 RMFVSGSCDSTARLWD-TRVASRAVRTFHGHEG----DVNTVKFFPD-GNRFGTGS-DDGTCRLFDIRT  281 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~  281 (388)
                      +++++.. ||.|.+|| .++-+.++..+...+.    .+..++|+|. ...+++.. ..++|+.||+..
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8887655 99999999 5554445544433333    4899999993 22344444 557899999853

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=4.1e-05  Score=66.83  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             EEEEEEeCCCceEEEe----eCCCe----EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          162 SCCQYVPDEDTHLITS----SGDQT----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~----~~dg~----v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      .++.|+-..++.+.+.    +.+|.    -.+|++..++......  ........+.+.+++| +...++.|+.||.|.+
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv--tsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV--TSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE--EEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            5567776555555543    33443    3467766553322211  1146778899999999 7889999999999999


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ||....   +.......-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       286 yD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            998754   3333344556789999999999999999999999998654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.76  E-value=3.4e-09  Score=91.70  Aligned_cols=209  Identities=17%  Similarity=0.221  Sum_probs=137.4

Q ss_pred             ccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee----CCCeE
Q 016522          110 AWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTC  183 (388)
Q Consensus       110 ~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~v  183 (388)
                      ..+.|+++..+  ...+++|..+|.|.+-..+.....     ......++..+.++++|++-..+.|++|-    .|..+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence            34667776553  357888999999999988874422     23455677889999999997656677663    36679


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CC
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG  262 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~  262 (388)
                      .|||+.++-....-...+..+......+++|.. +.+++.+|.....+.++|++........+  .+..+..+..+| .+
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP  208 (783)
T ss_pred             cceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence            999999872211111111122344566888884 88899999999999999998442222222  334577788888 77


Q ss_pred             CEEEEeeCCCcEEEEE-CCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEec-CCcEEEEEcc
Q 016522          263 NRFGTGSDDGTCRLFD-IRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYS-NGDCYVWDTL  327 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~-dg~i~i~d~~  327 (388)
                      +++++.. ||.|.+|| .++-+................+..++|.|... .+++... .+.|+.+|+.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            8887776 99999999 44333222222222222223588999999655 4454444 4689999874

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.76  E-value=5.1e-06  Score=74.05  Aligned_cols=127  Identities=20%  Similarity=0.153  Sum_probs=80.3

Q ss_pred             CceEEEECCC----CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCce------------eeEeeec
Q 016522          229 STARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ------------LQVYYQQ  291 (388)
Q Consensus       229 g~i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~~~  291 (388)
                      +.|.+.|.++    .......+. -......+.++|||+++++++ .++++.++|+.+.+.            .......
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            4577778776    223333332 345678899999999987765 588999999987553            2222221


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc----------ceEEeeccC-CCCCcCCCeeEEEECCCCCeEEE
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGS-LQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                            ......+|+++|+...+-.-|..|..||+..          ...+..+.. ...+|......=.-.|||++|++
T Consensus       375 ------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~  448 (635)
T PRK02888        375 ------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVS  448 (635)
T ss_pred             ------CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEE
Confidence                  1246778999998777888899999999876          233333311 11233222222233678888887


Q ss_pred             cc
Q 016522          361 GS  362 (388)
Q Consensus       361 ~~  362 (388)
                      ..
T Consensus       449 ~n  450 (635)
T PRK02888        449 LN  450 (635)
T ss_pred             cc
Confidence            65

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.75  E-value=2.5e-05  Score=62.70  Aligned_cols=210  Identities=16%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522          153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (388)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  232 (388)
                      .+.+-...+..++|.|+.+.++++....+.|..++. +++.+..+..    ......-.+++.. ++.++++.-.++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l----~g~~D~EgI~y~g-~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL----DGFGDYEGITYLG-NGRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-----SS-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC----CCCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence            445555679999999987788888899999999997 4677777642    3346678888875 666666666689999


Q ss_pred             EEECCCCCcce-----EEEe-----cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeeec--c-CCCC
Q 016522          233 LWDTRVASRAV-----RTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQ--H-GENE  296 (388)
Q Consensus       233 i~d~~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~--~-~~~~  296 (388)
                      ++++......+     ..+.     .++..+-.++|+|.++.|+.+-+..-..+|.++.   ..........  . ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            99884432211     1121     2445688999999888888887777777777764   2222111110  0 1112


Q ss_pred             CCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc-----CCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          297 IPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       297 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      ...+.+++++|... +++....+..|..+| ..|+.+..+......|     -...-.|+|.++|++.+ .+.-+..+++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            23478999999765 555566677888999 5677665543221111     13578999999996544 4455555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.70  E-value=4.8e-05  Score=68.73  Aligned_cols=269  Identities=14%  Similarity=0.122  Sum_probs=151.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc------cEE--EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------WVM--TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      +..++.++.++.|...|..+++.+-.+.....      .+.  .+... ++..++.++.+|.|.-+|.++++       .
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~-------~  132 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK-------Q  132 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC-------E
Confidence            44677788889999999999998877654332      000  01111 22678888889999999998866       2


Q ss_pred             eEEeccccc-----ceE-EEEEEeCCCceEEEee---------CCCeEEEEecCCCceEEEeecccccCC----------
Q 016522          151 SRMLSGHKG-----YVS-CCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEFQSGH----------  205 (388)
Q Consensus       151 ~~~~~~~~~-----~v~-~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~----------  205 (388)
                      .........     .+. ...+..   ..++.++         .+|.+..+|..+++....+........          
T Consensus       133 ~W~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~  209 (488)
T cd00216         133 VWKFGNNDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ  209 (488)
T ss_pred             eeeecCCCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence            222211110     011 111221   2344443         468899999999998887742110000          


Q ss_pred             -----ccCe-EEEEeeCCCCcEEEEeeCCC------------------ceEEEECCCCCcceEEEe-c-ccC----CeeE
Q 016522          206 -----TADV-LSVSISGSNSRMFVSGSCDS------------------TARLWDTRVASRAVRTFH-G-HEG----DVNT  255 (388)
Q Consensus       206 -----~~~i-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~-~-~~~----~i~~  255 (388)
                           ...+ ...++.+ .+..++.++.++                  .|.-+|..+++ ..-.++ . |..    ....
T Consensus       210 ~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~-~~W~~~~~~~~~~~~~~~s~  287 (488)
T cd00216         210 MWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK-VKWFYQTTPHDLWDYDGPNQ  287 (488)
T ss_pred             eecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC-EEEEeeCCCCCCcccccCCC
Confidence                 0001 1233343 345666666554                  68888988873 332222 1 110    0000


Q ss_pred             EEEc----cCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-------------
Q 016522          256 VKFF----PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-------------  315 (388)
Q Consensus       256 ~~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------------  315 (388)
                      ..+.    -++.   .++.++.+|.+...|.++++.+.......        ..++.+|  ..++++             
T Consensus       288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~  357 (488)
T cd00216         288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKK  357 (488)
T ss_pred             CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCccccc
Confidence            1111    1333   67888899999999999999887764321        1123333  223222             


Q ss_pred             -----ecCCcEEEEEcccceEEeeccCCCCCcC----CCe--eEEEECCCCCeEEEccCCCeEEEecc
Q 016522          316 -----YSNGDCYVWDTLLAKVVLNLGSLQNSHE----GRI--TCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       316 -----~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                           ..+|.+.-.|..+++.+.+.......+.    .+.  ..+..  .+..|++++.||.|+.++.
T Consensus       358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence                 2467899999999998887642100000    111  12222  4567888889999888775

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.68  E-value=7.7e-05  Score=58.31  Aligned_cols=105  Identities=11%  Similarity=0.042  Sum_probs=70.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      |++++.|+..|.+++-+..+|++...+..-..--..-...+++..+.+|+.|+..+..|..+..       .....+...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------cVykskcgG  135 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------CVYKSKCGG  135 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------eEEecccCC
Confidence            5688999999999999999998888776654422233457899999999999999999988743       233333222


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      +...+-+..| ++..|..+...|.|.--.....
T Consensus       136 ~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  136 GTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceeccceecC-CCceEEEEeccceEEEEccCCC
Confidence            2222233344 2334666666676666555554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.67  E-value=8.4e-05  Score=58.10  Aligned_cols=141  Identities=13%  Similarity=0.029  Sum_probs=88.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      ..+++.|+..+.+..-|..+|+........ .++.+-+.- -|++++.|+..|.+++.+..++.       ....+..- 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~f~~~-   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWNFVIL-   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heeeeeeh-
Confidence            357888999999999999998876543322 223222221 47789999999999999999864       11111111 


Q ss_pred             cceEE-EEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          159 GYVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       159 ~~v~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      +.|.+ ....+++ .++..|+.|+..+..|.++..++...     +.......+-+..|.++.++ .+...|.+.--..
T Consensus        93 ~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyks-----kcgG~~f~sP~i~~g~~sly-~a~t~G~vlavt~  164 (354)
T KOG4649|consen   93 ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKS-----KCGGGTFVSPVIAPGDGSLY-AAITAGAVLAVTK  164 (354)
T ss_pred             hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEec-----ccCCceeccceecCCCceEE-EEeccceEEEEcc
Confidence            12222 1233444 68999999999999999998888775     33333334445555344444 4444555544443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.67  E-value=5.7e-05  Score=60.65  Aligned_cols=212  Identities=14%  Similarity=0.177  Sum_probs=119.6

Q ss_pred             eeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           60 CRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      .+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.+..+.... +-.-.+++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            356777777899999999765 5566677788888885 578888877654 5588899988888888776789999999


Q ss_pred             CCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---CceEEEeec---ccccCCc
Q 016522          138 LNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGG---EFQSGHT  206 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~~---~~~~~~~  206 (388)
                      +......... .....+     ..++..+..++|.+.++. |+.+-...-..+|.+..   .........   .......
T Consensus        93 ~~~~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   93 IDDDTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             E----TT--E-EEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             Eeccccccch-hhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            8653321111 011111     134566899999998755 45555555566666553   222111110   0012345


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---------CCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                      ..+.+++++|..+++++.+..+..|..+|.. + +++..+.-..         ...-.|+|.++|++.++ ++-+..++|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            5688999999889999999999999999944 3 4444443222         24678999999865554 455555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.65  E-value=0.00024  Score=62.44  Aligned_cols=221  Identities=8%  Similarity=0.066  Sum_probs=115.8

Q ss_pred             EEeCCCCCeEEEEeCC----------C-cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           73 LDWTSERNRIVSASQD----------G-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        73 ~~~~~~~~~l~t~~~d----------g-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      ++.+|.|.-+|....+          . .|.||+ ..|+.+..+....+.+.++.|+.+. .|++...||.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence            4555666555555433          1 589998 5678888888777899999998854 4556678999999998642


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEee---cccccCC-ccCeEE-EEee
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFG---GEFQSGH-TADVLS-VSIS  215 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~---~~~~~~~-~~~i~~-~~~~  215 (388)
                      . ...-........-....+....+..+|   ++.-..++.+.+.+-.... ....+.   ......+ ...... ..++
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence            2 000000000011111222222333333   3333344545444322211 111110   0000000 001111 1233


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                      . +....+....++.+.+.+-... ..   +. ..+++..++.||+++++|.-..+|.+.+.+..-.+....+...    
T Consensus       188 ~-~~~~~i~~~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~----  257 (410)
T PF04841_consen  188 S-DRVVEILLANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD----  257 (410)
T ss_pred             c-CcceEEEEecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC----
Confidence            2 3334444445556664443321 11   22 2468999999999999999999999999987666555555443    


Q ss_pred             CCCCeEEEEecCCC
Q 016522          296 EIPHVTSIAFSISG  309 (388)
Q Consensus       296 ~~~~i~~~~~~~~~  309 (388)
                      .......+.|.-+.
T Consensus       258 ~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  258 SKSPPKQMAWCGND  271 (410)
T ss_pred             cCCCCcEEEEECCC
Confidence            12235677776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.64  E-value=0.0002  Score=64.74  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=137.0

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc--EEEEEECC--CCCEEEEee---------CCCcEEEEeCCCCCCCCC
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW--VMTCAFSP--TGQSVACGG---------LDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~vw~~~~~~~~~~  146 (388)
                      ..++.++.+|.|..+|..+|+.+..+......  -..+.-+|  .+..++.++         .+|.+.-+|..+++.   
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~---  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL---  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce---
Confidence            57888888999999999999998777654321  00111112  124455553         357788888877652   


Q ss_pred             CCceeEEecc-------------------cc-cce-EEEEEEeCCCceEEEeeCCC------------------eEEEEe
Q 016522          147 NLPVSRMLSG-------------------HK-GYV-SCCQYVPDEDTHLITSSGDQ------------------TCVLWD  187 (388)
Q Consensus       147 ~~~~~~~~~~-------------------~~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~v~i~d  187 (388)
                          ......                   +. ..+ ...++.+.+ ..++.++.++                  .|.-+|
T Consensus       188 ----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald  262 (488)
T cd00216         188 ----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD  262 (488)
T ss_pred             ----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence                111111                   00 111 123334333 4566666554                  799999


Q ss_pred             cCCCceEEEeecccccCCc-cCeEEEEee---CCCC---cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          188 ITTGLRTSVFGGEFQSGHT-ADVLSVSIS---GSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~---~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      ..+++....+......... .......+.   ..++   ..+++++.+|.+..+|.+++ +.+-.....   ...++.+|
T Consensus       263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~  338 (488)
T cd00216         263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP  338 (488)
T ss_pred             CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC
Confidence            9999998887421100000 000000111   0122   36788889999999999988 443332211   11233343


Q ss_pred             CCCEEEEe------------------eCCCcEEEEECCCCceeeEeeeccCCCC---CCCe--EEEEecCCCCEEEEEec
Q 016522          261 DGNRFGTG------------------SDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHV--TSIAFSISGRLLFAGYS  317 (388)
Q Consensus       261 ~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i--~~~~~~~~~~~l~~~~~  317 (388)
                        ..++.+                  ..+|.+.-.|+.+++.+...........   ..+.  ..+.  ..+..|++++.
T Consensus       339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~  414 (488)
T cd00216         339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAA  414 (488)
T ss_pred             --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECC
Confidence              233332                  2467899999999988777654310000   0001  1122  24578899999


Q ss_pred             CCcEEEEEcccceEEeecc
Q 016522          318 NGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~  336 (388)
                      ||.|+.+|..+++.+.+..
T Consensus       415 dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         415 DGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCeEEEEECCCCceeeEEE
Confidence            9999999999999998874

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.63  E-value=4.9e-05  Score=65.74  Aligned_cols=268  Identities=17%  Similarity=0.177  Sum_probs=137.6

Q ss_pred             CCCCCeEEEEe---------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           76 TSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        76 ~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      |||+++++...         ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...  
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence            57888777642         346789999998665544333 55688999999999999886 568999987664310  


Q ss_pred             CCceeEEecc-------c---------ccceEEEEEEeCCCceEEEeeCCCe----------------------------
Q 016522          147 NLPVSRMLSG-------H---------KGYVSCCQYVPDEDTHLITSSGDQT----------------------------  182 (388)
Q Consensus       147 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~~~~~dg~----------------------------  182 (388)
                          ..+..+       -         -+.-..+-|+|++..++..--.+..                            
T Consensus        77 ----~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   77 ----QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             ----ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             ----EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence                001111       0         1122457889987544333333322                            


Q ss_pred             -------EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEE-eeCCC---ceEEEECCCCCcceEEEeccc
Q 016522          183 -------CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVS-GSCDS---TARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       183 -------v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~  250 (388)
                             +.++|+.+++....-...........+..+.|.+ ++. +++. ...+.   .+.++|..++...........
T Consensus       153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                   3334444443321110000023355678888888 555 3333 22222   466667765533222222223


Q ss_pred             CCe---eEEEEc-cCCC-EEEEeeCCCc--EEEEECCCCceeeEeeeccCCCCCCCeE-EEEecCCCCEEE-EEecC--C
Q 016522          251 GDV---NTVKFF-PDGN-RFGTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLF-AGYSN--G  319 (388)
Q Consensus       251 ~~i---~~~~~~-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~d--g  319 (388)
                      ..|   ....|. +++. ++.....||.  |.+++...+... .+...     .-.|. -+.++++++.|+ ++..+  +
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G-----~~~V~~i~~~d~~~~~iyf~a~~~~p~  305 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG-----DWEVTSILGWDEDNNRIYFTANGDNPG  305 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S-----SS-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC-----ceeecccceEcCCCCEEEEEecCCCCC
Confidence            332   355554 5544 4555556775  555565555422 22211     12253 467888877544 44432  2


Q ss_pred             --cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                        .|+..++..+..+..+.    ...+.-..+.|+|++++++...
T Consensus       306 ~r~lY~v~~~~~~~~~~LT----~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  306 ERHLYRVSLDSGGEPKCLT----CEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             SBEEEEEETTETTEEEESS----TTSSTTEEEEE-TTSSEEEEEE
T ss_pred             ceEEEEEEeCCCCCeEecc----CCCCCceEEEECCCCCEEEEEE
Confidence              45556666233444442    2222226899999999887644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.61  E-value=1e-05  Score=72.27  Aligned_cols=219  Identities=11%  Similarity=-0.005  Sum_probs=128.5

Q ss_pred             CCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC----cEEEEeCCCCCCCCCCCce
Q 016522           76 TSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----VCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        76 ~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~  150 (388)
                      .|||+.+. +.-..+.+.+.|.++.+...++.... ....++++++|+++++.+.+.    .+...+....       ..
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-------d~  272 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-------DW  272 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-------ce
Confidence            44555442 22234567777888877777776655 457789999999998886432    2222222110       01


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----CceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                      ...+.-..  +  -.+.++|+. ...  .++.|.+.|..+     ......+      .-......+.++|+...+++++
T Consensus       273 ~vvfni~~--i--ea~vkdGK~-~~V--~gn~V~VID~~t~~~~~~~v~~yI------PVGKsPHGV~vSPDGkylyVan  339 (635)
T PRK02888        273 VVVFNIAR--I--EEAVKAGKF-KTI--GGSKVPVVDGRKAANAGSALTRYV------PVPKNPHGVNTSPDGKYFIANG  339 (635)
T ss_pred             EEEEchHH--H--HHhhhCCCE-EEE--CCCEEEEEECCccccCCcceEEEE------ECCCCccceEECCCCCEEEEeC
Confidence            11111000  0  023345543 333  367899999998     3444444      4556778899999555556666


Q ss_pred             eCCCceEEEECCCCCc-----------ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC----------Cce
Q 016522          226 SCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQ  284 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~  284 (388)
                      ..+.++.++|+.+...           .+....- .......+|.++|+...+..-|..|..|++.+          ...
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v  418 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI  418 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence            6799999999987532           1222222 22345688999999888888999999999876          223


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      +..+..+..+.|......=.-.|+|++|++..
T Consensus       419 ~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        419 VQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            33333333332222112222367888887753

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=0.00041  Score=60.59  Aligned_cols=261  Identities=17%  Similarity=0.139  Sum_probs=161.9

Q ss_pred             EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD  169 (388)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (388)
                      +.+++..+......+.... ....+...+++..+...... ..+...+.....       ...........-..++.++.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-------~~~~~~~g~~~p~~i~v~~~   84 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-------VTQSLSVGGVYPAGVAVNPA   84 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccce-------eeeeccCCCccccceeeCCC
Confidence            5556655554444444333 46677888888555554332 234444433111       11111111133456788888


Q ss_pred             CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEe
Q 016522          170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFH  247 (388)
Q Consensus       170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  247 (388)
                      +.+.++....++.|.+.|..+........      .......++++|.+....++-.  .++.+.+.|..+. .......
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~  157 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSIP------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP  157 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEee------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence            87777777778999999988877776653      2226778899985545555555  3688999998877 4444443


Q ss_pred             cccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEE
Q 016522          248 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYV  323 (388)
Q Consensus       248 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i  323 (388)
                      .-..+ ..++++|+|+.++... .++.|.+.|........ -..............+.++|+|.++.+....   +.+..
T Consensus       158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            32334 8899999999666655 78899999977655443 1111111122235778999999977665544   58999


Q ss_pred             EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-CeEEEec
Q 016522          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVSL  371 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~  371 (388)
                      .|..++........  .... ....+..+|+|..+.+.... +.+.+-+
T Consensus       236 id~~~~~v~~~~~~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         236 IDTATGNVTATDLP--VGSG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             EeCCCceEEEeccc--cccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            99988877765211  1222 45678899999988887443 5555544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.56  E-value=0.00024  Score=62.45  Aligned_cols=180  Identities=12%  Similarity=0.117  Sum_probs=92.2

Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc--cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      +.+.++.|..+  ..|+....||.+++||+.... ...+.....  .-....+....+.. +| +++ -..++.+.+..-
T Consensus        81 ~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-EEE-ECCCCeEEEEeC
Confidence            78899999885  357788899999999987443 111111110  01111122222221 33 222 233444444432


Q ss_pred             CCCCcceEEEecccCCee----------EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          237 RVASRAVRTFHGHEGDVN----------TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .......+.+..-.....          ...++.+....+....++.+.+.+-...+.         .....++..+++|
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---------i~~~~~i~~iavS  225 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---------IDSDGPIIKIAVS  225 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---------ccCCCCeEEEEEC
Confidence            211111111110000000          022333444444444444555333222111         0112359999999


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      |+|+++|.-..+|.+.+.+..-.+....+..   .-......|.|.-+..
T Consensus       226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~---~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDT---DSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCCEEEEEECCCCEEEEECcccceeEEeec---CcCCCCcEEEEECCCc
Confidence            9999999999999999998766666665531   2234667777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.52  E-value=0.00016  Score=62.63  Aligned_cols=239  Identities=18%  Similarity=0.202  Sum_probs=132.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-----------------CccEEEEEECCCCCEEEEeeC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-----------------CAWVMTCAFSPTGQSVACGGL  129 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~  129 (388)
                      ...+....|+|+|+.+|... ++.|.+++..++...+.....                 -..-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            67899999999999998876 578999998776443322211                 112356889999999887643


Q ss_pred             C-CcEEE-----------------------------------EeCCCCCCCCCCCceeEE---ecccccceEEEEEEeCC
Q 016522          130 D-SVCSI-----------------------------------FNLNSPTDKDGNLPVSRM---LSGHKGYVSCCQYVPDE  170 (388)
Q Consensus       130 d-g~i~v-----------------------------------w~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~  170 (388)
                      | ..|..                                   +++.+++     ......   .......+..+.|.+++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~-----~~~~~~~~~~~~~~~yl~~v~W~~d~  195 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK-----TTELDPPNSLNPQDYYLTRVGWSPDG  195 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC-----CCEE---HHHHTSSEEEEEEEEEETT
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc-----EEEeeeccccCCCccCcccceecCCC
Confidence            3 22222                                   2222211     001111   12234567889999987


Q ss_pred             CceEEE-eeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEee-CCCCcEEEEeeCCCceEEEECCCCCcceEE
Q 016522          171 DTHLIT-SSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (388)
Q Consensus       171 ~~~l~~-~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (388)
                      ..+++. ...+   ..+.+.|..++......... ..+--..-....+. +.+..++.....+|--+||-+.........
T Consensus       196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~  274 (353)
T PF00930_consen  196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ  274 (353)
T ss_dssp             EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred             cEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence            423332 2222   24667788777554444211 12222223355554 657777777778886666655544444556


Q ss_pred             EecccCCeeE-EEEccCCCEEE-EeeCCC----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          246 FHGHEGDVNT-VKFFPDGNRFG-TGSDDG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       246 ~~~~~~~i~~-~~~~~~~~~l~-~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      +....-.|.. +.++++++.|+ ++..++    .|..-++..+..+..+......     -..+.|||++++++....
T Consensus       275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-----HYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-----TEEEEE-TTSSEEEEEEE
T ss_pred             cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-----ceEEEECCCCCEEEEEEc
Confidence            6655556754 67788766554 444422    4555566623344444332221     158999999998876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.50  E-value=3.5e-05  Score=67.39  Aligned_cols=199  Identities=17%  Similarity=0.212  Sum_probs=121.2

Q ss_pred             CCeeeEeeeCCccEEEEEECCCCCEEEEee---CC-CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceE
Q 016522           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGG---LD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL  174 (388)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  174 (388)
                      +.....+......+..-+|+|++..++...   .. ..+.+++++.+...     ....+.++.   ..-.|+|+|..++
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----~i~~~~g~~---~~P~fspDG~~l~  253 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----VILNFNGNN---GAPAFSPDGSKLA  253 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----eeeccCCcc---CCccCCCCCCEEE
Confidence            444455555556677788999998766542   22 45889999886521     333334433   3458999998888


Q ss_pred             EEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522          175 ITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (388)
Q Consensus       175 ~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (388)
                      ++...||.  |.++|+..+.... +     ....+.-..-.|+|++..++++.+..|.-.||-.+........+....+.
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~~-L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~  327 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLPR-L-----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG  327 (425)
T ss_pred             EEECCCCCccEEEEcCCCCccee-c-----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence            88888886  5566777766333 2     22233333667899666666677777766666544433444555444444


Q ss_pred             eeEEEEccCCCEEEEeeC-CCc--EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          253 VNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       253 i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      -..-.|+|||++|+..+. +|.  |.+.|+.++.....+....      ....-.|.++++.+...+.
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~------~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY------LNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc------cCCCCCcCCCCceEEEecc
Confidence            447889999999987774 344  6667766655433322211      1334567788876655433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=7.3e-06  Score=74.11  Aligned_cols=110  Identities=13%  Similarity=0.153  Sum_probs=83.1

Q ss_pred             EEEEEECCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          112 VMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      .+-..|+|...+|++++.    .|.|.||--.....      ......-   .+++++|+|.. -.|+.|-.-|.+.+|.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P~---hatSLCWHpe~-~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYPV---HATSLCWHPEE-FVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccce---ehhhhccChHH-HHHhhccccceeEEEe
Confidence            445679999999988764    57888885433211      1111122   24569999974 5677888889999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      ..+.+.....     ..|+.+|..+.|++ +++.++++..-|.+.+|...
T Consensus        88 ~~~~e~htv~-----~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTTETHTVV-----ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCceeeeec-----cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            8877666555     78999999999999 89999999999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.48  E-value=0.00034  Score=59.79  Aligned_cols=221  Identities=13%  Similarity=0.137  Sum_probs=129.1

Q ss_pred             CcEEEEECCCCCeeeEeeeCC-ccEEEEE---ECCC----CCEEEEeeC---------C-CcEEEEeCCCCCCCCCCCce
Q 016522           89 GRLIVWNALTSQKTHAIKLPC-AWVMTCA---FSPT----GQSVACGGL---------D-SVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~---------d-g~i~vw~~~~~~~~~~~~~~  150 (388)
                      ..|++.|..+.+.+..+.... ..+.+++   +..+    ..++++|..         . |.|.++++.........+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            368899988888887776543 3355443   4432    567777753         2 88999999874111112222


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  229 (388)
                      .. .....++|++++-..  +. ++.+. .+.|.+|++...+ ......    ......+.++...   ++++++|+...
T Consensus        82 i~-~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~----~~~~~~i~sl~~~---~~~I~vgD~~~  149 (321)
T PF03178_consen   82 IH-STEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAF----YDSPFYITSLSVF---KNYILVGDAMK  149 (321)
T ss_dssp             EE-EEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEE----E-BSSSEEEEEEE---TTEEEEEESSS
T ss_pred             EE-EEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhhe----ecceEEEEEEecc---ccEEEEEEccc
Confidence            22 233468899888772  34 44433 3789999998887 433321    2333467777765   35889999888


Q ss_pred             ceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC-------Cc-eeeEeeeccCCCCCCC
Q 016522          230 TARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-------GH-QLQVYYQQHGENEIPH  299 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~~  299 (388)
                      .+.++..+.....+..+..  ....++++.|-++++.++.+..+|.+.++....       +. .+......+-   ...
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l---g~~  226 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL---GDI  226 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC---CCc
Confidence            8988866543232333322  344588888886667999999999999998763       11 2222222111   123


Q ss_pred             eEEE---EecC--CCC------EEEEEecCCcEEEE
Q 016522          300 VTSI---AFSI--SGR------LLFAGYSNGDCYVW  324 (388)
Q Consensus       300 i~~~---~~~~--~~~------~l~~~~~dg~i~i~  324 (388)
                      |+++   .+.|  .+.      .++.++.+|.|...
T Consensus       227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            6666   5555  222      47888899988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.45  E-value=0.00059  Score=56.64  Aligned_cols=267  Identities=15%  Similarity=0.104  Sum_probs=153.9

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCCCCCCCCCceeE--Eecc
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSR--MLSG  156 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~--~~~~  156 (388)
                      +.+.++|..+++.+..+...-.  -.+..+|+++.+++++          ..-.|.+||..+..       ...  .+..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-------~~~EI~iP~   87 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-------PTGEIEIPP   87 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-------EEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-------ccceEecCC
Confidence            4799999999988877765443  3466799999988753          24479999998843       111  1111


Q ss_pred             -cc----cceEEEEEEeCCCceEEE--eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522          157 -HK----GYVSCCQYVPDEDTHLIT--SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  229 (388)
Q Consensus       157 -~~----~~v~~~~~~~~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  229 (388)
                       |.    .....+.++.++. +++.  .+-...|.|.|+..++.+..+..      .+   |....|..+.-|.+-|.||
T Consensus        88 k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------PG---C~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT------PG---CWLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             S-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG------TS---EEEEEEEETTEEEEEETTS
T ss_pred             cchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecC------CC---EEEEEecCCCceEEEecCC
Confidence             01    1112245566653 3332  23345677778888777776631      11   2222333444577888899


Q ss_pred             ceEEEECCCCCcceEEEe----cccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC------C-CC
Q 016522          230 TARLWDTRVASRAVRTFH----GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------N-EI  297 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~-~~  297 (388)
                      .+.-..+....+..+...    ....++ ..-++...+..++-.+.+|.|+--|+...............      . ..
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence            999999986545443221    111222 23344445556666788899999888765432221111000      0 01


Q ss_pred             CCeEEEEecCCCCEEEEEec---CC-------cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEc-cCCC
Q 016522          298 PHVTSIAFSISGRLLFAGYS---NG-------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDT  365 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg  365 (388)
                      +...-+++++..+.|++--.   +|       .|.++|+.+++.+..+.     -..++.+|+.+.+.+ +|++. ..++
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCCcEEEEEcCCCC
Confidence            12345778776665554322   11       48889999999999883     245688999998765 56544 4689


Q ss_pred             eEEEeccceeeeec
Q 016522          366 NLKVSLHYYIFVLM  379 (388)
Q Consensus       366 ~v~iw~~~~~~~~~  379 (388)
                      .+.+|+......+.
T Consensus       313 ~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  313 TLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEEEETTT--EEE
T ss_pred             eEEEEeCcCCcEEe
Confidence            99999976544333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.45  E-value=3.3e-05  Score=67.53  Aligned_cols=164  Identities=17%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             ecccccceEEEEEEeCCCceEEEeeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522          154 LSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (388)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  230 (388)
                      +......+..-.|+|++..+....-..   ..+.++|+.++.......      ..+.-....|+|+...++++...||.
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------FNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec------cCCccCCccCCCCCCEEEEEECCCCC
Confidence            333345566678888876544332222   459999999987766652      33444556799967777777778886


Q ss_pred             eEEE--ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          231 ARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       231 i~i~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                      ..+|  |+...  ....+....+.-..-.|+|||+.++-.+. .|  .|.+++.............. .     -..-.|
T Consensus       262 ~~iy~~dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~-----~~~p~~  333 (425)
T COG0823         262 PDIYLMDLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-G-----NSNPVW  333 (425)
T ss_pred             ccEEEEcCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-C-----CcCccC
Confidence            5554  65544  34444444444446789999999887653 44  36667766555433222211 1     126679


Q ss_pred             cCCCCEEEEEec-CCc--EEEEEcccceE
Q 016522          306 SISGRLLFAGYS-NGD--CYVWDTLLAKV  331 (388)
Q Consensus       306 ~~~~~~l~~~~~-dg~--i~i~d~~~~~~  331 (388)
                      +|+|++|+..+. +|.  |.+.|+.++..
T Consensus       334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         334 SPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            999998887764 344  66677665553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.42  E-value=0.00047  Score=58.95  Aligned_cols=184  Identities=12%  Similarity=0.181  Sum_probs=108.5

Q ss_pred             CceEEEeeC----------CCeEEEEecCCC----ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          171 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       171 ~~~l~~~~~----------dg~v~i~d~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      ..+++.|+.          .|.|.++++...    ..+....   .....++|++++..  ++. ++++. ++.|.+|++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l  114 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDL  114 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCE-EEEee-cCEEEEEEc
Confidence            356666643          289999999884    1222221   13557889999877  444 43333 589999999


Q ss_pred             CCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522          237 RVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  313 (388)
                      .... .+.....+..  .+.++..  .++++++|.....+.++..+. ...+..+....   ....++++.|-++++.++
T Consensus       115 ~~~~-~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  115 DNSK-TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             ETTS-SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEE
T ss_pred             cCcc-cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEE
Confidence            8774 2322222333  4555544  467999999888888886554 23233333321   233588888886667999


Q ss_pred             EEecCCcEEEEEccc-------c--e--EEeeccCCCCCcCCCeeEE---EECCC--CC------eEEEccCCCeEEEec
Q 016522          314 AGYSNGDCYVWDTLL-------A--K--VVLNLGSLQNSHEGRITCL---GLSAD--GS------ALCTGSWDTNLKVSL  371 (388)
Q Consensus       314 ~~~~dg~i~i~d~~~-------~--~--~~~~~~~~~~~~~~~v~~~---~~~~~--~~------~l~s~~~dg~v~iw~  371 (388)
                      ++..+|.+.++....       +  +  ....+     .....|+++   ++.|.  +.      .++-++.+|.|.+..
T Consensus       189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-----~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-----HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-----E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEcCCCeEEEEEECCCCcccccccccceeEEEE-----ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            999999999998752       1  1  22222     234567777   55552  22      378888999998655


Q ss_pred             c
Q 016522          372 H  372 (388)
Q Consensus       372 ~  372 (388)
                      +
T Consensus       264 p  264 (321)
T PF03178_consen  264 P  264 (321)
T ss_dssp             E
T ss_pred             e
Confidence            4

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.40  E-value=0.0013  Score=58.47  Aligned_cols=248  Identities=13%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             CeeEEEeCCCCCeEEEE-eCCC----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----------c
Q 016522           69 KVYSLDWTSERNRIVSA-SQDG----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----------V  132 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~-~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~  132 (388)
                      .+....++|+|+++|.+ +..|    .++++|+.+++.+...-. ......+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988754 3334    599999999976653211 11123499999988877765433           3


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccc--eEEEEEEeCCCceEEEeeCC---CeEEEEecCCC----ceEEEeeccccc
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGD---QTCVLWDITTG----LRTSVFGGEFQS  203 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~----~~~~~~~~~~~~  203 (388)
                      |..|++.++...     -...+......  ...+..++++..+++.....   ..+.+.|+..+    .....+.    .
T Consensus       204 v~~~~~gt~~~~-----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~----~  274 (414)
T PF02897_consen  204 VYRHKLGTPQSE-----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS----P  274 (414)
T ss_dssp             EEEEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE----E
T ss_pred             EEEEECCCChHh-----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe----C
Confidence            777887764421     12333333322  56778888875544444332   45888888774    2222221    2


Q ss_pred             CCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEe-eCCC--cEE
Q 016522          204 GHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDG--TCR  275 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~  275 (388)
                      ...+....+...  ++.+++...   ..+.|...++.....  ....+..+...+.-..+...+++|+.. ..++  .|+
T Consensus       275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence            223333334333  444444433   245777778876632  122455555533333333345555544 3444  588


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE--ec--CCcEEEEEcccceEE
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--YS--NGDCYVWDTLLAKVV  332 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~--dg~i~i~d~~~~~~~  332 (388)
                      ++++..+..........    .+.+..+...++++.+...  +.  -++++-||+.+++..
T Consensus       353 v~~~~~~~~~~~~~~p~----~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPE----AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEETT-TEEEEEEESSS----SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEECCCCcEEeeecCCc----ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            99988333333333211    1235666666666643332  21  357888888887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=0.00044  Score=60.87  Aligned_cols=222  Identities=11%  Similarity=0.043  Sum_probs=114.5

Q ss_pred             eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       107 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      .....+..+.++|+|+++++ +.||...++....         .....   .+.-...+|.+.+  .+++-...+.|.++
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~---------~r~k~---~G~g~~~vw~~~n--~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA---------WRNKA---FGSGLSFVWSSRN--RYAVLESSSTIKIY   94 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT---------TEEEE---EEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC---------Ccccc---cCceeEEEEecCc--cEEEEECCCeEEEE
Confidence            34455789999999999998 4577778887433         11211   2445567898843  47777778889996


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      .--+......+      .....+..+-.    |.+|...+. +.|.+||..+. +.++.+...  +|..+.|++++.+++
T Consensus        95 kn~~~~~~k~i------~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen   95 KNFKNEVVKSI------KLPFSVEKIFG----GNLLGVKSS-DFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVA  160 (443)
T ss_dssp             ETTEE-TT-----------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEE
T ss_pred             EcCccccceEE------cCCcccceEEc----CcEEEEECC-CCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEE
Confidence            32222221222      11112333332    566666654 48999999987 777777643  489999999999999


Q ss_pred             EeeCCCcEEEEECCCC-----------ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          267 TGSDDGTCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..+.+ .+.+++....           .........     ...|.+.+|..+  .++-.+.. .++-+  ..|+.-. +
T Consensus       161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~-i  228 (443)
T PF04053_consen  161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGI-I  228 (443)
T ss_dssp             EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEE-E
T ss_pred             EEeCC-eEEEEEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcce-E
Confidence            98765 5777765432           011111110     123778888755  44444344 55553  3333221 1


Q ss_pred             cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                          ..-..++.=+.+.+..+.+.....|+.|..+...
T Consensus       229 ----~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  229 ----AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             ----EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             ----EEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence                1123456667777767788888888888877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.38  E-value=0.0011  Score=58.54  Aligned_cols=225  Identities=13%  Similarity=0.078  Sum_probs=113.8

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      +-...-....+.++|+|++++. +.||...|+.........  .   +.-...+|.+.++ +|+-..++.|.++.--...
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence            3334456889999999998888 557888888844333322  1   2345678888555 6666668889996322211


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                             ....+... ..+..+-.   | .+|...+. +.|.+||..+++.+..+     . .. +|..+.|++ ++.++
T Consensus       101 -------~~k~i~~~-~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i-----~-v~-~vk~V~Ws~-~g~~v  159 (443)
T PF04053_consen  101 -------VVKSIKLP-FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRI-----D-VS-AVKYVIWSD-DGELV  159 (443)
T ss_dssp             -------TT-----S-S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEE-----S-S--E-EEEEE-T-TSSEE
T ss_pred             -------cceEEcCC-cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEE-----e-cC-CCcEEEEEC-CCCEE
Confidence                   00111111 11222222   4 55555554 48999999999999988     2 22 389999998 77888


Q ss_pred             EEeeCCCceEEEECCCC----------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          223 VSGSCDSTARLWDTRVA----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      +..+.+ .+.+++.+..          ...+.....-...|.+.+|..+  .++-.+.. .|+-  +..|... .+....
T Consensus       160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld  232 (443)
T PF04053_consen  160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLD  232 (443)
T ss_dssp             EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-S
T ss_pred             EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcC
Confidence            877754 6777775421          0134444443568899999755  44433333 5655  3333322 222211


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      .     ++.-+.+.+..+.++....++.+..+.+.
T Consensus       233 ~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  233 K-----PLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             S-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             C-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            1     25556666766677777777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=0.0014  Score=57.71  Aligned_cols=74  Identities=23%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      .+.+.+++++|+...++.|+.||+|.+||...+.....      ...-.++.++|+|+|.++++|+..|.+.+|+.....
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            34589999999999999999999999999876644332      234567899999999999999999999999976543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00057  Score=57.05  Aligned_cols=227  Identities=15%  Similarity=0.110  Sum_probs=126.3

Q ss_pred             EECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522          116 AFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       116 ~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      .|.++.. ++.+--..+.|.-|+..++.        ...+. +.+.+.++.....+ ..|+++.. | +.+++.+++...
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--------~~~~~-~p~~~~~~~~~d~~-g~Lv~~~~-g-~~~~~~~~~~~~   98 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK--------KRVFP-SPGGFSSGALIDAG-GRLIACEH-G-VRLLDPDTGGKI   98 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc--------eEEEE-CCCCcccceeecCC-CeEEEEcc-c-cEEEeccCCcee
Confidence            4666665 34444456788888877533        22222 22333444444443 33444433 2 566776666553


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  263 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (388)
                      ..+............+...+.| ++.+.++...           -|.|+.+|. . ....+.+..+-..-+.|+||||++
T Consensus        99 t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386          99 TLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             EEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence            3332222122335567778888 5555554333           133444443 2 255566665566678999999998


Q ss_pred             EEEEeeC-CCcEEEEECCC--CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCC
Q 016522          264 RFGTGSD-DGTCRLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       264 ~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  339 (388)
                      .|+.... .+.|.-|++..  +..-...............-.++...+|.+-+++..+| .|..|+.. ++.+..+    
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i----  250 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI----  250 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE----
Confidence            8777654 47788887752  11111100000011222345677788888775555554 99999987 8888777    


Q ss_pred             CCcCCCeeEEEECC-CCCeEEEcc
Q 016522          340 NSHEGRITCLGLSA-DGSALCTGS  362 (388)
Q Consensus       340 ~~~~~~v~~~~~~~-~~~~l~s~~  362 (388)
                      ......+++++|-- +.+.|+..+
T Consensus       251 ~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         251 KLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ECCCCCCccceEeCCCcCEEEEEe
Confidence            34446788888853 445554443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00083  Score=58.66  Aligned_cols=210  Identities=15%  Similarity=0.139  Sum_probs=140.8

Q ss_pred             eeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCC
Q 016522           70 VYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKD  145 (388)
Q Consensus        70 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~  145 (388)
                      -..++.++.++ ..++...++.|.+.|..+........... ....++++++++.+.++..   ++.+.+.|..+..   
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---
Confidence            44678888887 44555556899999988877777776555 5788999999988888766   5788888877644   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                          .......-..+ ..+++.|+|...+++-..++.|.+.|........ -..............+.+.|+.....++.
T Consensus       152 ----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         152 ----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             ----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEe
Confidence                33333332234 7899999987666777789999999977665553 11000123334456778888444444444


Q ss_pred             eCC--CceEEEECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeee
Q 016522          226 SCD--STARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       226 ~~d--g~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~  290 (388)
                      ..+  +.+...|.... ..... ...-......+..+|+|..+.+... .+.+.+.|..+.........
T Consensus       226 ~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         226 DGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             ccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            444  58888888765 23222 2211114567899999999888744 48899999888777665543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.32  E-value=0.00011  Score=63.71  Aligned_cols=208  Identities=10%  Similarity=0.095  Sum_probs=113.1

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee--------CCccEEEEEECC-----CC-
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSP-----TG-  121 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~-----~~-  121 (388)
                      .+.+...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-..        ....++++.|..     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            466777777789999999998555 999999999999999977766655322        224578888852     33 


Q ss_pred             --CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CC-------------------CceEEEeeC
Q 016522          122 --QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DE-------------------DTHLITSSG  179 (388)
Q Consensus       122 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-------------------~~~l~~~~~  179 (388)
                        -.+++|...|.+.+|.+.-................+.++|..+.... +.                   -.-++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              56889999999999988521111111112222234556666665332 10                   012344445


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEee----CCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc----C
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----G  251 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~  251 (388)
                      +..++++...+.+.....     .........+.+-    ...+..|++-..+|.+++|.+... +.+.......    .
T Consensus       234 e~~irv~~~~~~k~~~K~-----~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~  307 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKS-----FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSR  307 (395)
T ss_dssp             SSEEEEE-TT---EEEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH
T ss_pred             ccceEEEeCCCCccccee-----eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccc
Confidence            677999998887766654     2222223333442    125677888899999999999876 5555444321    2


Q ss_pred             CeeEEEEccCCCEEEEeeC
Q 016522          252 DVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~  270 (388)
                      .+...+++++|+.++-.+.
T Consensus       308 ~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SS
T ss_pred             cccccEECCCCCEEEEeCc
Confidence            3445666777776655543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=6e-06  Score=73.05  Aligned_cols=134  Identities=15%  Similarity=0.191  Sum_probs=95.6

Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee-eccCCCC
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY-QQHGENE  296 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~  296 (388)
                      ...+++.|+.-|.+++|+-..+........+..+.+..+..+++..++|.|+..|.|.++-+....+..... ......+
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            778999999999999999776533333443455567778889999999999999999999988754443332 2233335


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEEC
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      ...|++++|++++..+++|...|+|..-.+.+. ........+ ....+.|..+...
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~~ds~IVQlD~~  179 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LSEDSEIVQLDYL  179 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-eccCcceEEeecc
Confidence            668999999999999999999999998887762 111100000 2345667777765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=2.4e-06  Score=65.22  Aligned_cols=153  Identities=17%  Similarity=0.064  Sum_probs=99.0

Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (388)
                      .+...+.+|.|+-++++..+...+.-.-+...-.-+   .-+..+++|+.+|.|.+|...............   .....
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~  105 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESID  105 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcc---cccce
Confidence            445566788888888875533333332232221111   235679999999999999876321111111100   11112


Q ss_pred             EEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEc--cCCCeEEEeccceeee
Q 016522          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKVSLHYYIFV  377 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~--~~dg~v~iw~~~~~~~  377 (388)
                      +.+.-..++.+.+++..+|.|+.|+....+.+...    ..|. .++.....+..+++|+.+  |.|..++.|+..++.-
T Consensus       106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             eccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence            23333345568899999999999999988888776    5676 677777777778888888  8999999999887666


Q ss_pred             eccccc
Q 016522          378 LMPCHC  383 (388)
Q Consensus       378 ~~~~~~  383 (388)
                      ..|.+.
T Consensus       182 ~~~i~~  187 (238)
T KOG2444|consen  182 ESPISS  187 (238)
T ss_pred             cCcchh
Confidence            555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.22  E-value=0.0022  Score=53.51  Aligned_cols=233  Identities=15%  Similarity=0.109  Sum_probs=128.1

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE----
Q 016522           77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR----  152 (388)
Q Consensus        77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----  152 (388)
                      ..++.|+.|..+| +.+++.........+. +...|..+...++-+.+++-+ |+.+.++++..-...........    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3567899999998 8999983333222222 222399999999877766654 59999999987442221100000    


Q ss_pred             ---EecccccceEEEE--EEeCCCceEEEeeCCCeEEEEecCCC-----ceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          153 ---MLSGHKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       153 ---~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                         ........+...+  -...+...++ ......|.+|.....     .....+      .....+.+++|.+   +.+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~------~lp~~~~~i~~~~---~~i  151 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEI------SLPDPPSSIAFLG---NKI  151 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEE------EcCCCcEEEEEeC---CEE
Confidence               0111122333333  1123333344 444458888887663     233333      4457889999983   566


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEec------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHG------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +.|..+ ...+.|+.+. .....+..            ...++..+... ++.+|++.  |..-.+.|. .|+.......
T Consensus       152 ~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  152 CVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             EEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence            666644 5788898855 22222211            11233333333 45555543  333333343 4443331111


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..    ...+.++++.  ..||++.+.+ .|.||++.+++.+..+
T Consensus       226 ~W----~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  226 QW----SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTI  263 (275)
T ss_pred             Ec----CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEE
Confidence            11    1125566663  4577777654 5999999999988877

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.18  E-value=0.00021  Score=48.58  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             eeEEEeCC---CC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           70 VYSLDWTS---ER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        70 v~~~~~~~---~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      |++|++..   +| +.|++|+.|..|++|+-  .+.+..+.... .|+++.-... ..|+.+..+|+|-+|+-..     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-----   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-KVTSLCSLGG-GRFAYALANGTVGVYDRSQ-----   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-ceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence            66777655   33 58999999999999983  35666666554 4777776655 6689999999999998654     


Q ss_pred             CCCceeEEecccccceEEEEEEe---CCCceEEEeeCCCeEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCV  184 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~  184 (388)
                          .....+. +..++++.+..   +|...|++|-.+|.|-
T Consensus        73 ----RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ----RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                1222222 23355665543   3444689998888774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.4e-05  Score=69.95  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE-EEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      ..+..+.|+|.-.++|.+..+|.|.++.+. .+.+..+..+..+     ++ +++|.|||+.||+|-.||+|++.|..++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc-----cceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            457789999999999999999999999988 7777777543332     44 9999999999999999999999999999


Q ss_pred             eEEeeccCCCCCcCCCeeEEEECC
Q 016522          330 KVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      ..+....   ......|+++-|++
T Consensus        95 ~~l~~~~---~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFL---FSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccc---cccccchheeeccc
Confidence            8877642   34566788888863

>smart00320 WD40 WD40 repeats

Probab=98.13  E-value=7.1e-06  Score=44.85  Aligned_cols=38  Identities=34%  Similarity=0.676  Sum_probs=34.4

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN   95 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd   95 (388)
                      ++...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.13  E-value=0.00014  Score=67.67  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=93.8

Q ss_pred             eeCCCeEEEEecCCCceEEEeecccccCCc-cCeEEEEeeC----CCCcEEEEeeCCCceEEEECCCCCcceEEEec---
Q 016522          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHT-ADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---  248 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  248 (388)
                      ......|+-.|++.|+.+..+.     .+. .+|..++-..    ....-.++|-.+..+..||+|.....+..-..   
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~-----~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y  574 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWK-----VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY  574 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEee-----cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence            3456789999999999999984     333 3355554321    12334566778889999999976322221111   


Q ss_pred             -ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          249 -HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       249 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                       ......|++-+.+| +||+|+.+|.||+|| +.+...++...    .-..+|..+..+.||++|++.+.. .+.+++.
T Consensus       575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp----~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALP----GLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCC----CCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence             33456777777666 699999999999999 44444333332    234579999999999998877644 6777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.12  E-value=0.00013  Score=67.76  Aligned_cols=147  Identities=17%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             CCcEEEEe-eCCCceEEEECCCCCcceEEEecccCC-eeEEEEcc-----CCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          218 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       218 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +.++|+.. .....|+-.|+..+ +.+..+..|... |..++-..     ....-+.|-.++.+..||.|-.........
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            44555543 34578999999988 888888877654 54443221     133456777788999999986431111111


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      ...-......+|++-+.+| +||+|+.+|.|++||- .++.-.+.   ..+...+|..|..+.||++|++.+. ..+.+.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~---lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi  644 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA---LPGLGDPIIGIDVTADGKWILATCK-TYLLLI  644 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc---CCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence            1111223347777776655 8999999999999994 33322222   2577899999999999998887764 444444


Q ss_pred             c
Q 016522          371 L  371 (388)
Q Consensus       371 ~  371 (388)
                      .
T Consensus       645 ~  645 (794)
T PF08553_consen  645 D  645 (794)
T ss_pred             E
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.2e-05  Score=68.78  Aligned_cols=94  Identities=16%  Similarity=0.262  Sum_probs=76.6

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEE-EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      ..|.-+.|+|.-..+|++..+|.|.+..+. .+.+.+++.++..++ +++|.|||+.|++|-.||+|++.|.+++...  
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l--   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL--   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce--
Confidence            368889999999999999999999999987 888899998888888 9999999999999999999999999986521  


Q ss_pred             CCceeEEecccccceEEEEEEe
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVP  168 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~  168 (388)
                          ..........|.++.|.+
T Consensus        98 ----~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 ----VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ----eccccccccchheeeccc
Confidence                111222345666666653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.08  E-value=0.00075  Score=45.97  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=68.4

Q ss_pred             eEEEEEEe---CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          161 VSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       161 v~~~~~~~---~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      |++|++..   +|.+.|++|+.|..|++|+-.  ..+..+      .....|++++-..  ...|+.+..+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLG--GGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcC--CCEEEEEecCCEEEEEeCc
Confidence            45555544   556889999999999999844  555555      4456788888775  3678999999999999864


Q ss_pred             CCCcceEEEecccCCeeEEEEcc-CC---CEEEEeeCCCcEE
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR  275 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~  275 (388)
                      .  +..+.-.  ...+.++.+.. ++   .-|++|-.+|.|-
T Consensus        72 ~--RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 Q--RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2  2222222  23366666554 22   2588888888764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.07  E-value=0.0086  Score=54.67  Aligned_cols=248  Identities=13%  Similarity=0.164  Sum_probs=132.7

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE-EEEEECC--CCCEEEEee------CCCcEEEEeCCCCCCCC--CCC
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGG------LDSVCSIFNLNSPTDKD--GNL  148 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~------~dg~i~vw~~~~~~~~~--~~~  148 (388)
                      ..++.++.|+.+...|..+|+.+-......... ..+.-+|  .+..++++.      .+|.|.-+|.++++..=  ...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            467778889999999999999887665321100 0111112  123444443      26788888887765210  000


Q ss_pred             cee----------------------EEecccccceE-EEEEEeCCCceEEEeeC-----CC-----------eEEEEecC
Q 016522          149 PVS----------------------RMLSGHKGYVS-CCQYVPDEDTHLITSSG-----DQ-----------TCVLWDIT  189 (388)
Q Consensus       149 ~~~----------------------~~~~~~~~~v~-~~~~~~~~~~~l~~~~~-----dg-----------~v~i~d~~  189 (388)
                      +..                      .....-.+.+. .+++.+.. .+++.+..     ++           .|.-.|++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            000                      00000011121 23555543 33443331     12           68888999


Q ss_pred             CCceEEEeecccccCC----ccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceE--------EE----eccc
Q 016522          190 TGLRTSVFGGEFQSGH----TADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVR--------TF----HGHE  250 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~--------~~----~~~~  250 (388)
                      +++....+........    .....-+.... ++   ..++.+..+|.+.+.|.+++ +.+.        .+    ....
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG-~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNG-KLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCC-ceeccccccCCcccccccCCCC
Confidence            9999888743111000    01111122212 33   47889999999999999887 3331        11    0000


Q ss_pred             -CCe----------------------------eEEEEccCCCEEEEeeCC------------------------------
Q 016522          251 -GDV----------------------------NTVKFFPDGNRFGTGSDD------------------------------  271 (388)
Q Consensus       251 -~~i----------------------------~~~~~~~~~~~l~~~~~d------------------------------  271 (388)
                       .++                            ..++++|+..+++....+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence             000                            125666665555544333                              


Q ss_pred             ---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc
Q 016522          272 ---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       272 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (388)
                         |.|.-+|+.+++...........     .... +.-.+.+++.++.+|.++.+|..+++.+....
T Consensus       438 ~~~g~l~AiD~~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       438 DHMGSLIAWDPITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             CCceeEEEEeCCCCceeeEecCCCCC-----CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence               45777777777776655432111     1111 11245577788889999999999999998874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00072  Score=58.52  Aligned_cols=140  Identities=17%  Similarity=0.189  Sum_probs=91.2

Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC-------EEEEeeCCCcEEEEECCCCce-eeEeeecc
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-------RFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH  292 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  292 (388)
                      +|..+.....++-.|+..+ +.+..+.-+.. |+-+.+.|+.+       .-+.|-.|..|.-||.+-... .......+
T Consensus       348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3445566677888899888 78888876665 77788888543       124455678899999874332 11111111


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v  367 (388)
                      .-.......|.+-..+| +|++|+.+|.|++||- .+..-.+.-   .+...+|..+..+.||++|+..+..-.+
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLl  495 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLL  495 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEE
Confidence            11112234555554444 8999999999999996 433332221   6788999999999999988776644333

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.01  E-value=0.012  Score=53.86  Aligned_cols=198  Identities=14%  Similarity=0.088  Sum_probs=109.2

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-cEE---EEEECC-----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVM---TCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~---~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      +..|+.++.++.|.-.|..+|+.+-.+..... .+.   ++.+..     .+..++.++.|+.+.-.|..+++..     
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~-----  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV-----  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE-----
Confidence            45777788889999999999998877654221 111   111111     2356777888999999998886621     


Q ss_pred             eeEEecccc--cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCC----------------
Q 016522          150 VSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGH----------------  205 (388)
Q Consensus       150 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~----------------  205 (388)
                      .......+.  ..+++--..-+ + .++.+.      .+|.|..+|.++++.+..+...-....                
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~-g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~  221 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVK-G-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK  221 (527)
T ss_pred             eecccccccccccccCCcEEEC-C-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence            111111111  11111111112 2 344443      368999999999998877643211100                


Q ss_pred             ----------ccCe-EEEEeeCCCCcEEEEeeCC-----C-----------ceEEEECCCCCcceEEEecccC-------
Q 016522          206 ----------TADV-LSVSISGSNSRMFVSGSCD-----S-----------TARLWDTRVASRAVRTFHGHEG-------  251 (388)
Q Consensus       206 ----------~~~i-~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~-------  251 (388)
                                ...+ ..+++.| +.+++..+.-+     +           .|.-.|++++ +..-.++....       
T Consensus       222 tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       222 TWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             CCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccC
Confidence                      0011 1335555 44455554422     2           4566677766 33333332111       


Q ss_pred             --CeeEEEEccCCC---EEEEeeCCCcEEEEECCCCcee
Q 016522          252 --DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       252 --~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                        ...-+....+|+   .++.+..+|.+.+.|-++++.+
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence              111223324665   7888999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.94  E-value=0.0053  Score=47.64  Aligned_cols=139  Identities=16%  Similarity=0.192  Sum_probs=84.4

Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCC---------CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE-eeCCCcEE
Q 016522          206 TADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCR  275 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~  275 (388)
                      ....+.-..+| ++++++-.-.|         |.++.|-..   ..+..+...-.--+.++|+.+.+.+.. -+.+-.|.
T Consensus       108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC---CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            44556667788 77774322222         344444433   222333333344567899887776654 44566776


Q ss_pred             EEE--CCCCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          276 LFD--IRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       276 i~d--~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      -||  ..+|..     +..+.... +......-.+++..+|++.++.-+.|+|...|..+++.+.++    .-....|++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~-~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei----klPt~qits  258 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQ-PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI----KLPTPQITS  258 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCC-CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----EcCCCceEE
Confidence            677  554432     22221111 111112345566778888888888899999999999999998    456788999


Q ss_pred             EEECC
Q 016522          349 LGLSA  353 (388)
Q Consensus       349 ~~~~~  353 (388)
                      ++|--
T Consensus       259 ccFgG  263 (310)
T KOG4499|consen  259 CCFGG  263 (310)
T ss_pred             EEecC
Confidence            99964

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.93  E-value=0.0045  Score=56.89  Aligned_cols=234  Identities=12%  Similarity=0.170  Sum_probs=121.5

Q ss_pred             CCCCeEEEEeCCC------cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C-----cEEEEeCCCCCCC
Q 016522           77 SERNRIVSASQDG------RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S-----VCSIFNLNSPTDK  144 (388)
Q Consensus        77 ~~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~vw~~~~~~~~  144 (388)
                      ..+..++.||.++      .+..+|..++.-...............-.-++...++||.| |     .+..||.....  
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--
Confidence            3455667777663      67788887765443333222222222222356888889888 3     56677776644  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-----EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                         +.....+........ ++..  ++.+.++||.||.     |-.||..+.+....-      .............-++
T Consensus       361 ---W~~~a~M~~~R~~~~-v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------~m~~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  361 ---WTPVAPMNTKRSDFG-VAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------PMLTRRSGHGVAVLGG  428 (571)
T ss_pred             ---eeccCCccCccccce-eEEE--CCEEEEEeccccccccccEEEecCCCCcccccC------CCCcceeeeEEEEECC
Confidence               111112221111111 1222  3467889998874     777888776544332      1111222222222377


Q ss_pred             cEEEEeeCCC------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCc-----EEEEECCCCceeeE
Q 016522          220 RMFVSGSCDS------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQV  287 (388)
Q Consensus       220 ~~l~~~~~dg------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~  287 (388)
                      .+.++|+.++      ++..||..+.. ..+..+..-..... ++.- ++.+.+.|+.|+.     |..||..+.+-...
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            8888888655      56778876541 11111111111112 2222 6778888887763     77788777654443


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccceE
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKV  331 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  331 (388)
                      -......   ..+...  .-++...++|+.||     +|..||..+.+-
T Consensus       507 ~~m~~~r---s~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  507 APMTSPR---SAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             ccCcccc---ccccEE--EECCEEEEEecccCccccceeEEcCCCCCce
Confidence            2111110   111111  12566777787776     466777655443

>PHA02713 hypothetical protein; Provisional

Probab=97.90  E-value=0.0039  Score=57.42  Aligned_cols=222  Identities=9%  Similarity=0.067  Sum_probs=105.3

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------CcEEEEeCCCCCCCCCCCceeEEecccccceEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (388)
                      .+..||..+.+-...-..+..........-++..++.||.+      ..+..||..+..-     .....+....... +
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----~~~~~m~~~R~~~-~  346 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----VELPPMIKNRCRF-S  346 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----eeCCCCcchhhce-e
Confidence            56778877654332211111111111122367777778754      2467788766431     1111111111111 2


Q ss_pred             EEEEeCCCceEEEeeCCC-----eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---------
Q 016522          164 CQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---------  229 (388)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------  229 (388)
                      ++.. + +.+.+.||.++     .+..||..+......-+  +  .....-.+++..  ++.+.+.|+.++         
T Consensus       347 ~~~~-~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~--m--p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        347 LAVI-D-DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD--M--PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             EEEE-C-CEEEEECCcCCCCCCceEEEEECCCCeEEECCC--C--CcccccccEEEE--CCEEEEEeCCCcccccccccc
Confidence            2222 2 46777787754     48889988775443221  1  111111122222  677888887653         


Q ss_pred             --------------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCC------cEEEEECCC-CceeeE
Q 016522          230 --------------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------TCRLFDIRT-GHQLQV  287 (388)
Q Consensus       230 --------------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~  287 (388)
                                    .+..||..+.. ..+..+.........+.+  ++++.+.|+.++      .+..||..+ .+-...
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~  496 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI  496 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence                          46678876541 111111111111112222  567777776542      467888876 332221


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCC--cEEEEEcccceEE
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVV  332 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  332 (388)
                      ...   +........+.  -+|+..++|+.+|  .+..||..+.+-.
T Consensus       497 ~~m---~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        497 TTT---ESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ccc---CcccccceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence            111   10111122222  2678888888888  6777777665543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.90  E-value=0.0028  Score=58.22  Aligned_cols=189  Identities=13%  Similarity=0.070  Sum_probs=101.6

Q ss_pred             CCeeEEEeCCCCCeEEEEe------CCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---------
Q 016522           68 GKVYSLDWTSERNRIVSAS------QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---------  130 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  130 (388)
                      ..+.+.+++|+|+.++...      .|+  .+.+++. .+.. ..+... ...+.-.|+|+|+.+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678889999999887654      244  4444454 2222 333222 237788999998877776533         


Q ss_pred             ---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE---EecCCCceEEEeecccccC
Q 016522          131 ---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       131 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i---~d~~~~~~~~~~~~~~~~~  204 (388)
                         +.+.+.+++.+.       ...   ...+.|..+.|+|||..+.+..  +|.|.+   -....+.....-.......
T Consensus       427 ~~~gql~~~~vd~ge-------~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        427 PATGQLARTPVDASA-------VAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             CCCceEEEEeccCch-------hhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence               222222332211       111   2346799999999996655444  477777   4444454111110111123


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                      ....+.++.|.+ ++.+ +++..++.-.+|.+.-.......+..  ...++..++-++.  .++....+|.+.
T Consensus       495 l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        495 LGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCccccceEec-CCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            334468899997 5554 45555555555554332222222122  2456667776653  455555666433

>PHA02713 hypothetical protein; Provisional

Probab=97.87  E-value=0.0014  Score=60.29  Aligned_cols=191  Identities=9%  Similarity=0.055  Sum_probs=96.9

Q ss_pred             CCCeEEEEeCC------CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCCCCCC
Q 016522           78 ERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDG  146 (388)
Q Consensus        78 ~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~  146 (388)
                      ++..++.||.+      ..+..||..+..-...-......-......-+|+..+.||.++     .+..||..+..-   
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W---  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW---  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE---
Confidence            45566777753      3467788766543211111111111112233678888888764     477888876431   


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCC-----------------------eEEEEecCCCceEEEeeccccc
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----------------------TCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                        .....+.........+.  -+ +.+.+.||.++                       .+..||..+.+....-+  +  
T Consensus       380 --~~~~~mp~~r~~~~~~~--~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~--m--  450 (557)
T PHA02713        380 --KMLPDMPIALSSYGMCV--LD-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN--F--  450 (557)
T ss_pred             --EECCCCCcccccccEEE--EC-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC--C--
Confidence              11111111111111112  23 46677776542                       47788888875543221  1  


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCC------ceEEEECCC-C-CcceEEEecccCCeeEEEEccCCCEEEEeeCCC--c
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRV-A-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--T  273 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~  273 (388)
                      .....-.+++..  ++.+.+.|+.++      .+..||..+ . ...+..+.........+.+  ++++.++|+.+|  .
T Consensus       451 ~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        451 WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML  526 (557)
T ss_pred             CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence            111111223333  567777777542      467898885 2 2333333332333333333  788888999888  6


Q ss_pred             EEEEECCCCce
Q 016522          274 CRLFDIRTGHQ  284 (388)
Q Consensus       274 i~i~d~~~~~~  284 (388)
                      +..||..+.+-
T Consensus       527 ~e~yd~~~~~W  537 (557)
T PHA02713        527 QDTFNVYTYEW  537 (557)
T ss_pred             hhhcCcccccc
Confidence            66777666543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.87  E-value=0.011  Score=49.30  Aligned_cols=232  Identities=13%  Similarity=0.144  Sum_probs=126.0

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      ..++.|+.|..+| +.+++.....      ......  +...|..+...++-+.+++.  .|+.+.++++..-.......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~------~~~~i~--~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS------KPTRIL--KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc------cceeEe--ecceEEEEEEecccCEEEEE--cCCccEEEEchhhccccccc
Confidence            4678899999998 8999983221      112222  22339999999875433333  45999999987654433110


Q ss_pred             c---------ccccCCccCeEEEE-eeCCCCcEEEEeeCCCceEEEECCCCC----cceEEEecccCCeeEEEEccCCCE
Q 016522          199 G---------EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       199 ~---------~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                      .         .........+..++ -....+...++......|.+|......    ...+.+. -...+..++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence            0         00012333455544 112233333444445689998877531    2334443 34678899998  567


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      ++.|..+ ...+.|+.++.....+......       ....++..+... ++.+|++-  |..-.+.|. .|++...-. 
T Consensus       151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~-  224 (275)
T PF00780_consen  151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST-  224 (275)
T ss_pred             EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE-
Confidence            7777654 4888999977665444221111       112233444443 45566543  333333343 333322100 


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                        -.-...+.++++.  ..+|+..+. +.|.||+....
T Consensus       225 --i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~  257 (275)
T PF00780_consen  225 --IQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETG  257 (275)
T ss_pred             --EEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence              1123356667764  447777665 55999987653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.87  E-value=0.0089  Score=48.07  Aligned_cols=192  Identities=11%  Similarity=0.123  Sum_probs=121.6

Q ss_pred             cceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      .....+.|..++ .++-+.+.-|  .|+.+|+.+++.......    ...----.++..  ++.+....=.++...+||.
T Consensus        45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l----~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPL----PPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-----TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEEC----CccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence            344567776665 5666776666  699999999987766532    222223344444  4566667778899999999


Q ss_pred             CCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .+. +.+..+.- .+.=..++.  +++.|+.+.....|.++|..+.+....+...........++.+.|- +|...|-.-
T Consensus       118 ~tl-~~~~~~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW  192 (264)
T PF05096_consen  118 NTL-KKIGTFPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW  192 (264)
T ss_dssp             TTT-EEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred             ccc-eEEEEEec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence            876 66666653 345566763  6777888777889999999888887777655444444557778886 677777777


Q ss_pred             cCCcEEEEEcccceEEeeccCC-----------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSL-----------QNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ....|...|..+|+....+...           .....+-.+.||++|....|...|
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7778999999999988765310           001145689999988665544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0096  Score=48.08  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=118.9

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      +.|-...|.++.|+|+.+.|++......-.||=..+|+.+.+++... ...-.+.+..+|++.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            55666679999999999999988888888888778899988886533 23556788888888888888889998888765


Q ss_pred             CCCCCCCceeEEe--ccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc-c----ccCCccCeEEEE
Q 016522          142 TDKDGNLPVSRML--SGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-F----QSGHTADVLSVS  213 (388)
Q Consensus       142 ~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~----~~~~~~~i~~~~  213 (388)
                      ............+  ..+ +.....++|.|.. ..+..+-.-.-+.||.............. .    ..-.-..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            3211110111111  122 5667889999986 55677766666777766533211111000 0    011134577888


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      +++..+.+++.+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            98888899999999999888887643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=4.1e-05  Score=58.67  Aligned_cols=106  Identities=10%  Similarity=0.103  Sum_probs=62.7

Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                      ..-++.|+.+|.|.+|+...........    ......|.+....-..+.+..++..+|.|+.|++... +.+.....|+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh----hcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeecccc
Confidence            3568999999999999876221111110    1222334443333335568899999999999998765 5555555565


Q ss_pred             -CCeeEEEEccCCCEEEEe--eCCCcEEEEECCC
Q 016522          251 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT  281 (388)
Q Consensus       251 -~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  281 (388)
                       .++..+..+..+..++..  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence             344444444444555555  5555566665543

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00015  Score=39.29  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      +....+..+...|.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566677888899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.72  E-value=0.015  Score=50.71  Aligned_cols=83  Identities=19%  Similarity=0.027  Sum_probs=52.7

Q ss_pred             CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC--------------CCe-EEEccC
Q 016522          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--------------GSA-LCTGSW  363 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~-l~s~~~  363 (388)
                      .+.+++.+|++++.|+..+=|+|.++|+.++..+..++....+.-+-+....-...              ..+ ++=+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            47889999999999998888999999999988887774322221111111111100              112 233556


Q ss_pred             CCeEEEeccceeeeeccc
Q 016522          364 DTNLKVSLHYYIFVLMPC  381 (388)
Q Consensus       364 dg~v~iw~~~~~~~~~~~  381 (388)
                      -|.|.||.......+..+
T Consensus       389 Rg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CCeEEEEecCCCCEEEEE
Confidence            899999988665554443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.67  E-value=0.0042  Score=57.15  Aligned_cols=161  Identities=15%  Similarity=0.080  Sum_probs=87.8

Q ss_pred             cCeEEEEeeCCCCcEEEEee------CCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEE
Q 016522          207 ADVLSVSISGSNSRMFVSGS------CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLF  277 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~  277 (388)
                      ..+.+.+++| +++.++...      .|+  .|.+++...  .......+  .....-.|+|+|..|++...... +++.
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            4678889999 555554433      233  455555432  23222222  23788999999888877753322 2232


Q ss_pred             ECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEE---EEcccceE-EeeccCCCCCcCCCeeEEE
Q 016522          278 DIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAKV-VLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~~~~~~~~~~~~~~v~~~~  350 (388)
                      +-.....+.........   .....|..+.|||||..++... +|.|++   -....+.. +.....+...-...+.++.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            22111122211111100   1123599999999999888765 577777   44344431 1111111123334468899


Q ss_pred             ECCCCCeEEEccCCCeEEEeccce
Q 016522          351 LSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       351 ~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |..++.++ ++..++...+|....
T Consensus       504 W~~~~~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             EecCCEEE-EEecCCCCceEEEec
Confidence            99998854 656666666776543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.027  Score=47.23  Aligned_cols=226  Identities=14%  Similarity=0.106  Sum_probs=124.5

Q ss_pred             EEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522           73 LDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (388)
Q Consensus        73 ~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (388)
                      -.|.++.. ++.+--..+.|.-|+..+++. ..+..+.. +.++..-..+..|+++..  -+.+++.+.+...   ....
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~-~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~---t~~~  102 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGG-FSSGALIDAGGRLIACEH--GVRLLDPDTGGKI---TLLA  102 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCC-cccceeecCCCeEEEEcc--ccEEEeccCCcee---EEec
Confidence            34667666 455556678888898776543 33333333 344433333444444322  2455665432210   0011


Q ss_pred             EEecc-cccceEEEEEEeCCCceEEEee-----C-----CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          152 RMLSG-HKGYVSCCQYVPDEDTHLITSS-----G-----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      ....+ .....+.+...|+|.-++-+.+     .     -|.|+.+|. .+......     ..+-...+.++|+|++..
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCCCE
Confidence            11111 1244567778888632222222     1     134555554 44444444     444566789999995545


Q ss_pred             EEEEeeCCCceEEEECCC--C----CcceEEEecccCCeeEEEEccCCCEEEEeeCCC-cEEEEECCCCceeeEeeeccC
Q 016522          221 MFVSGSCDSTARLWDTRV--A----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      ++++=+..+.|.-|++..  .    ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+.....
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~  255 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK  255 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence            555555568888888762  1    111222233445666788888888776555554 89999988 888888766532


Q ss_pred             CCCCCCeEEEEec-CCCCEEEEEec
Q 016522          294 ENEIPHVTSIAFS-ISGRLLFAGYS  317 (388)
Q Consensus       294 ~~~~~~i~~~~~~-~~~~~l~~~~~  317 (388)
                           .+++++|- |+.+.|++.+.
T Consensus       256 -----~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         256 -----RPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             -----CCccceEeCCCcCEEEEEec
Confidence                 36777774 44555554443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.65  E-value=0.031  Score=47.87  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=119.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee---EEecccccceEEEEEEeC---CCceEEEeeCC----
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPD---EDTHLITSSGD----  180 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d----  180 (388)
                      ..+.|+|.|+|+++++ ...|.|++++... ..   .....   ............++++|+   +..+.+..+..    
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cC---cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            3678999999887665 5599999999332 21   00011   112234456789999994   22333333321    


Q ss_pred             ----CeEEEEecCCC--c--eEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeCCC-------------ceEEEECC
Q 016522          181 ----QTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDS-------------TARLWDTR  237 (388)
Q Consensus       181 ----g~v~i~d~~~~--~--~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg-------------~i~i~d~~  237 (388)
                          ..|.-|....+  .  ....+......  ........|.|.| ++.++++.+..+             .|.-.+..
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence                24544554443  1  11111000111  2333456699999 666666655433             22222322


Q ss_pred             CCC------------cceEEEecccCCeeEEEEccC-CCEEEEe-eCCCcEEEEECCCCceee----E---------ee-
Q 016522          238 VAS------------RAVRTFHGHEGDVNTVKFFPD-GNRFGTG-SDDGTCRLFDIRTGHQLQ----V---------YY-  289 (388)
Q Consensus       238 ~~~------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~~----~---------~~-  289 (388)
                      ...            .....-.++. ....++|+|. |.++++= +.++.=.|.-+..+...-    .         .. 
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~  235 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD  235 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred             CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence            110            0111112222 2467999998 6655432 223222222222221100    0         00 


Q ss_pred             eccCC---------CCCCCeEEEEecC-------CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          290 QQHGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       290 ~~~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .....         .....++.+.|..       .|.++++....+.|....+.....+.....+......++..+++.|
T Consensus       236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence            00000         1112355666653       3446666655678888888755443333222245556899999999


Q ss_pred             CCCeEEEccCCCeEE
Q 016522          354 DGSALCTGSWDTNLK  368 (388)
Q Consensus       354 ~~~~l~s~~~dg~v~  368 (388)
                      ||.+.++-+.+|.|.
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999988888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0018  Score=56.25  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC------CcEEEEeeCCCceEEEECCCCCc-
Q 016522          169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR-  241 (388)
Q Consensus       169 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-  241 (388)
                      +.+-++.++.....++-.|++.|+.+..+.     -+.. |+-+.+.|..      ...-+.|-.+..|.-||+|.... 
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-----~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-----FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEee-----ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence            333345567777889999999999999883     3333 6666666521      12234567788999999986543 


Q ss_pred             ceEEEeccc----CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          242 AVRTFHGHE----GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       242 ~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      .+...++|.    ....|.+-..+ .+|++|+.+|.|++||- .+....+..+..    ..+|..+..+.+|++|++.+.
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----G~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGL----GDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccccc----CCceeeEEeeccCcEEEEecc
Confidence            222233332    23455555544 47999999999999995 555555544333    346999999999998877654


Q ss_pred             CCcEEEEEc
Q 016522          318 NGDCYVWDT  326 (388)
Q Consensus       318 dg~i~i~d~  326 (388)
                       ..+.+.++
T Consensus       492 -tyLlLi~t  499 (644)
T KOG2395|consen  492 -TYLLLIDT  499 (644)
T ss_pred             -cEEEEEEE
Confidence             46666654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.63  E-value=0.032  Score=47.62  Aligned_cols=245  Identities=14%  Similarity=0.077  Sum_probs=108.3

Q ss_pred             ECCCCCeeeEeeeCCccEEEE-----EECCCCCEEEEeeC-CC--cEEEEeCCCCCCCCCCCceeEEecccc-cceEEEE
Q 016522           95 NALTSQKTHAIKLPCAWVMTC-----AFSPTGQSVACGGL-DS--VCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQ  165 (388)
Q Consensus        95 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  165 (388)
                      |..+|..+..+.........+     +|.++|+.|+.++. ||  .+.+.|+.++.        ...+.... .......
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------i~QLTdg~g~~~~g~~   87 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------ITQLTDGPGDNTFGGF   87 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------EEE---SS-B-TTT-E
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------EEECccCCCCCccceE
Confidence            667777777776554433333     56778866655544 54  56666777643        23333222 2222455


Q ss_pred             EEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee-CCCCcEEEEeeC-----------------
Q 016522          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC-----------------  227 (388)
Q Consensus       166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~-----------------  227 (388)
                      +++++ +.++-......|.-.|+.+.+....+     ......+....|. +.++..++..-.                 
T Consensus        88 ~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   88 LSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             E-TTS-SEEEEEETTTEEEEEETTT--EEEEE-----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             EecCC-CeEEEEECCCeEEEEECCcCcEEEEE-----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence            66775 44444445568899999998766555     2333333334443 224444432211                 


Q ss_pred             -----CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeC---CC-cEEEEECCC-CceeeEeeeccCCCC
Q 016522          228 -----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD---DG-TCRLFDIRT-GHQLQVYYQQHGENE  296 (388)
Q Consensus       228 -----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~  296 (388)
                           ...|...|+.++ . ...+..-...+..+.|+| |..+|+-|.+   +. .-+||-+++ +.....+...   ..
T Consensus       162 ~~a~p~~~i~~idl~tG-~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---~~  236 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTG-E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---ME  236 (386)
T ss_dssp             HHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T
T ss_pred             HhhCCCceEEEEECCCC-c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC---CC
Confidence                 123445566554 2 333333456788899999 4445555443   11 125565543 2222222221   12


Q ss_pred             CCCeEEEEecCCCCEEEE-Ee----cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          297 IPHVTSIAFSISGRLLFA-GY----SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~-~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      ...+..=-|.|||..|.- +.    .+..|.-+|+.+++.....      .......+.-++||++++-=|.|
T Consensus       237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~------~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM------EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE------EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE------eCCceeeeEEcCCCCEEEecCCC
Confidence            234666679999996554 22    1335677788877654322      11234456667899877665554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0035  Score=59.16  Aligned_cols=101  Identities=16%  Similarity=0.279  Sum_probs=70.6

Q ss_pred             CCCeEEEEeCCCcEEEEECCCC-CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc
Q 016522           78 ERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (388)
                      .+..++.|+..|.|-..|+... .+...=....++|++++|+.+|..++.|-.+|.|.+||...++       ..+.+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-------~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-------ILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-------ceeeeee
Confidence            3456888888899998887543 1112223345789999999999999999999999999998855       4555555


Q ss_pred             cccceEEE---EEEeCCCceEEEeeCCCeEEEEec
Q 016522          157 HKGYVSCC---QYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       157 ~~~~v~~~---~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      |..+.+.+   .+..++ ..++++..-|.  +|.+
T Consensus       171 ~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            55554444   334443 46778877776  4543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.00087  Score=62.96  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=77.6

Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      ....++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.....+ +.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap-~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP-VT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-cc
Confidence            44578899999999999987642333333334678999999999999999999999999999998888877654332 22


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                       .+..+.+..++..++++...|.  +|.+
T Consensus       177 -~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 -GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence             3455556666667888877776  5543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.50  E-value=0.058  Score=47.23  Aligned_cols=155  Identities=7%  Similarity=0.047  Sum_probs=89.1

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe---CCCceEEEeeCCCeEEEEecCCCce---
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLR---  193 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~i~d~~~~~~---  193 (388)
                      +...+++|+..|.++||+..........   ......-..+|..+..-+   ..+...++.-.-..+.+|.+.....   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~---lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPED---LLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCcc---EEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            4478999999999999999654322211   112223346676666532   2222333445566777887732110   


Q ss_pred             ---EEEeecccccCCccCeEEEEeeCC----CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          194 ---TSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       194 ---~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                         ...+..............+++-|.    +..++.+-+.||.+.+|+-+.. ...+.+.. ---...++|.+.-+.|+
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEeecCCEEE
Confidence               011111111222334444554432    2478999999999999997643 21222222 22233478888888899


Q ss_pred             EeeCCCcEEEEEC
Q 016522          267 TGSDDGTCRLFDI  279 (388)
Q Consensus       267 ~~~~dg~i~i~d~  279 (388)
                      +++.+..+..|..
T Consensus       191 t~sss~~l~~Yky  203 (418)
T PF14727_consen  191 TASSSWTLECYKY  203 (418)
T ss_pred             EecCceeEEEecH
Confidence            9998888888875

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.043  Score=44.44  Aligned_cols=280  Identities=12%  Similarity=0.046  Sum_probs=148.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      .+-+..+.++.+  +...+..+.-++|.|+.+......+..-.  +.-.++  .-.|++..++..|.-+.+.|+.++..+
T Consensus        86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCc
Confidence            345666777654  66677777789999998766544433221  323333  345888888887777889999886532


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                          .+..........-..++.+.   ++...+..|+-+.+.|+........+..   ......+.++..++ +..+++.
T Consensus       162 ----~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~---~n~g~g~~sv~vsd-nr~y~vv  230 (370)
T COG5276         162 ----QLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGS---YNTGPGTYSVSVSD-NRAYLVV  230 (370)
T ss_pred             ----eeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEE---EecCCceEEEEecC-CeeEEEE
Confidence                23333333334445566653   4567777888899999987644333321   12333677887776 5555554


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEE-EEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI  303 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  303 (388)
                      ..  --+.+-|......+...-.-....+.++ .+.-.+++......+.-+.+-|+.+.............  ...-..+
T Consensus       231 y~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi  306 (370)
T COG5276         231 YD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGI  306 (370)
T ss_pred             cc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--Cccccce
Confidence            43  3467777776632222111112222232 22224666666666666777776653322211111000  0011112


Q ss_pred             EecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .  ..+.++..+..+ ...+.+....+..-..    .+....+.+.+.+-+.+.+.+...++-+.||.+
T Consensus       307 ~--ay~~y~yiadkn-~g~vV~~s~~s~m~~~----~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         307 R--AYGNYNYIADKN-TGAVVDASPPSMMDKR----PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             E--EecCeeEeccCC-ceEEEeCCChhhcccc----cCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            1  123344444333 3444443332222111    122222333344445568888888999988865

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.38  E-value=0.00086  Score=38.07  Aligned_cols=33  Identities=21%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK  101 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~  101 (388)
                      ..|.+++|+|..++||.|+.+|.|.++.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            46999999999999999999999999998 5544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.055  Score=43.91  Aligned_cols=208  Identities=13%  Similarity=0.148  Sum_probs=122.2

Q ss_pred             cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522          155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (388)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~  234 (388)
                      .+-...+.++.|+|+. +.|++......-.++=...|..+.+++..    .-...-.+.+.. ++.+.++--.++.+.++
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig-~n~fvi~dER~~~l~~~  155 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIG-GNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEec-CCEEEEEehhcceEEEE
Confidence            3445569999999996 45666666666666666678888888643    234455677775 67777777778888888


Q ss_pred             ECCCCCcceE---------EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC-----CCCCe
Q 016522          235 DTRVASRAVR---------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHV  300 (388)
Q Consensus       235 d~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i  300 (388)
                      .+......+.         .....+.....++|+|....|+..-+..-+.||................+.     ...-+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7665421111         111124567789999998889988888888888776433111111111110     01236


Q ss_pred             EEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc--C---CCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          301 TSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--E---GRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       301 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      +++.|++... .|+.+.+++.+.-.|.. +.++..+......|  .   .....++..++|. |...|.-+..+.+
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F  309 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF  309 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence            7888887544 66666677777777764 33333332111111  1   2335667776664 3444444444433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.36  E-value=0.081  Score=45.76  Aligned_cols=235  Identities=17%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             CCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEecc---cc----cceEEEEEEeCCCceEEEee------CCCeEEE
Q 016522          120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---HK----GYVSCCQYVPDEDTHLITSS------GDQTCVL  185 (388)
Q Consensus       120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~v~i  185 (388)
                      +.++|++.+ ..+.|+|.|+.+...   ...+.+.+..   +.    ..-..+...|+| .+++++-      .-|-+.+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPR---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TT---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCC---CCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEE
Confidence            456666665 678999999985331   2223333332   11    122223344555 4666542      2346888


Q ss_pred             EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--------------------CCCceEEEECCCCCcceEE
Q 016522          186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------------------CDSTARLWDTRVASRAVRT  245 (388)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~  245 (388)
                      +|-++.+........  ......-..+-|.| ..+.++++.                    ...++.+||+... +.++.
T Consensus       162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~  237 (461)
T PF05694_consen  162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQT  237 (461)
T ss_dssp             E-TTT--EEEE--SB---TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEE
T ss_pred             EcCccccccceeccC--CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeE
Confidence            888877777666321  12234456777788 667777743                    2457999999987 77777


Q ss_pred             EecccC--CeeEEEEcc--CCCEEEE-eeCCCcEEEEEC-CCCcee----eEeeeccCCCC------------CCCeEEE
Q 016522          246 FHGHEG--DVNTVKFFP--DGNRFGT-GSDDGTCRLFDI-RTGHQL----QVYYQQHGENE------------IPHVTSI  303 (388)
Q Consensus       246 ~~~~~~--~i~~~~~~~--~~~~l~~-~~~dg~i~i~d~-~~~~~~----~~~~~~~~~~~------------~~~i~~~  303 (388)
                      +.--..  .+..+.|..  +..+=++ +.-..+|..|-- ..++-.    ..+........            ..-|+.+
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            764332  344566654  4444333 334445555543 333211    11111000000            2347999


Q ss_pred             EecCCCCEEEEEec-CCcEEEEEcccc---eEEeeccC---C---------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522          304 AFSISGRLLFAGYS-NGDCYVWDTLLA---KVVLNLGS---L---------QNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~---~---------~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      .+|.|.++|.+.+. +|.|+.||+...   +...++..   +         ...-.+....+..|-||+.|...+
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999999887765 899999998753   22222210   0         001123457788888888876653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.031  Score=42.74  Aligned_cols=181  Identities=14%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             CceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522          171 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       171 ~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (388)
                      +.++.+.+.-  ..|++||+.+++.+..............++.+     ...+....-.+|.-..+|.++. +.+..+. 
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-  128 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTL-EELGRFS-  128 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHh-hhhcccc-
Confidence            3566665543  36999999999877665322111122222222     3334444556788888998876 4444443 


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .++.-..++.  |+..|+.+.....++.-|..+..................++.+.|- +|...|-.-.+..|...|..+
T Consensus       129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence            2333445554  5566777766667888787665555444332222222234555553 566666666666777777777


Q ss_pred             ceEEeeccC--------CCCCcCCCeeEEEECCCC-CeEEEc
Q 016522          329 AKVVLNLGS--------LQNSHEGRITCLGLSADG-SALCTG  361 (388)
Q Consensus       329 ~~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~  361 (388)
                      |+.+..+..        ....+....+.+++.|++ ++++||
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            776654431        113456678999999977 566665

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.35  E-value=0.06  Score=44.13  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             CeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE-CCCCc
Q 016522          208 DVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGH  283 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~  283 (388)
                      .+.+.++++ ++..++...   ....++++....  .......  ...+..-+|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688899998 455444433   333455554432  2222223  23778889999988777777666666664 33333


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe---cCCcEEEEEcc---cc--eEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTL---LA--KVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      ...........  ...|+.+.+||||..++...   .++.|++--+.   .+  ..+.............+++++|.+++
T Consensus       100 ~~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  100 GEPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             ceeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            22222111111  11699999999999777655   34677766443   22  11111111112335689999999999


Q ss_pred             CeEEEccCCCe
Q 016522          356 SALCTGSWDTN  366 (388)
Q Consensus       356 ~~l~s~~~dg~  366 (388)
                      .+++.+...+.
T Consensus       178 ~L~V~~~~~~~  188 (253)
T PF10647_consen  178 TLVVLGRSAGG  188 (253)
T ss_pred             EEEEEeCCCCC
Confidence            87777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.042  Score=44.27  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             EEEEEeCCCceEEEeeCCCe-EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEEC
Q 016522          163 CCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDT  236 (388)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~  236 (388)
                      .|+++|..+.-++.+-.-|+ ..++|....+....+....   ..----.=.|+| ++.+|...-.|     |.|-+||.
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~---~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE---GRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc---CceeecccccCC-CCcEEEeecCCCCCCCceEEEEec
Confidence            47778876666666666664 5678888877666553211   001111234777 77777765443     78999999


Q ss_pred             CCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      +..-..+-.+..|.-....+.|.+||+.++...
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            977666777888888888999999999888764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.062  Score=43.35  Aligned_cols=238  Identities=12%  Similarity=0.095  Sum_probs=129.7

Q ss_pred             eEEEeCCCC-CeEEEEeCCCc-EEEEECCCCCeeeEeeeCCcc--EEEEEECCCCCEEEEeeCC-----CcEEEEeCCCC
Q 016522           71 YSLDWTSER-NRIVSASQDGR-LIVWNALTSQKTHAIKLPCAW--VMTCAFSPTGQSVACGGLD-----SVCSIFNLNSP  141 (388)
Q Consensus        71 ~~~~~~~~~-~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  141 (388)
                      ..|+|+|.. .-++.+-.-|+ ..++|....+...++......  --.=.|||||.+|+..-.|     |.|-|||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            357788754 34556666565 467898887777666543322  1223589999999987543     78999999863


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEee------CCC-----------eEEEEecCCCceEEEeecccccC
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------GDQ-----------TCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg-----------~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      -      ...-.+..|.-.-..+.+.+||..+++..+      .-|           ++.+.|..++..+....... ..
T Consensus       151 f------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l  223 (366)
T COG3490         151 F------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SL  223 (366)
T ss_pred             c------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hh
Confidence            3      234456667666778899999854333333      111           23333433443332221100 13


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCce----EEEECCCCCcceEEEe-------cccCCeeEEEEccCCCEEEEee-CCC
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTA----RLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGS-DDG  272 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i----~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-~dg  272 (388)
                      +.-.+..++..+ ++..++.+-..|.-    -+.-...+.+++..+.       .....|-+++.+.+..+++..+ ..+
T Consensus       224 ~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence            344566666665 44444333222210    0000001112222221       1234567788876555555554 556


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      ...+||..++..+..-....       ...++  +...-+++.+.+|.+.++.
T Consensus       303 ~~vi~da~tG~vv~~a~l~d-------aaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         303 RAVIWDAATGAVVSEAALPD-------AAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             eEEEEEcCCCcEEecccccc-------cccce--eccCceEEecCCceEEecc
Confidence            78899999998776543311       22333  3334456666788888774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.29  E-value=0.026  Score=52.02  Aligned_cols=197  Identities=18%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             eeEEEeCCCCCeEEEEeCC-C-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----cEEEEeC
Q 016522           70 VYSLDWTSERNRIVSASQD-G-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNL  138 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~d-g-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~  138 (388)
                      -.+++.. ++...++||.| |     ++..||..+.+-...-.........-.-.-+|...++||.||     ++-.||.
T Consensus       325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence            3444444 34677888888 3     567788776653321111111111111123688889999986     4667777


Q ss_pred             CCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC------eEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      .+..     +........   .........-++.+.++||.++      ++..||..++.....-+-    .....-..+
T Consensus       404 ~~~~-----W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M----~~~R~~~g~  471 (571)
T KOG4441|consen  404 VTNK-----WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM----NTRRSGFGV  471 (571)
T ss_pred             CCCc-----ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc----ccccccceE
Confidence            6643     222222211   1122222222346777887554      577899888765544321    111222224


Q ss_pred             EeeCCCCcEEEEeeCCCc-----eEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCC
Q 016522          213 SISGSNSRMFVSGSCDST-----ARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRT  281 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  281 (388)
                      +..  ++.+++.|+.|+.     |..||..+..- .+..+......+....+  ++...++|+.||     +|..||..+
T Consensus       472 a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  472 AVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            443  7788999998873     67788775421 11112222222222333  567778888775     356666554


Q ss_pred             Cc
Q 016522          282 GH  283 (388)
Q Consensus       282 ~~  283 (388)
                      .+
T Consensus       548 d~  549 (571)
T KOG4441|consen  548 DT  549 (571)
T ss_pred             Cc
Confidence            43

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.28  E-value=0.05  Score=47.51  Aligned_cols=86  Identities=13%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-------------C-CC-EEE
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-------------S-GR-LLF  313 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~-~~-~l~  313 (388)
                      ....+.+++.+|++++.++...=|.|.++|+.++..+..+...... ....+....-..             . .. +++
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3445788999999999888888899999999988776665443221 000010000000             0 11 233


Q ss_pred             EEecCCcEEEEEcccceEEeec
Q 016522          314 AGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      -+-.-|.|.||.++++..+..+
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEE
Confidence            3556789999998888777665

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.24  E-value=0.14  Score=45.77  Aligned_cols=224  Identities=16%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             EEEEEECCCCCEEEEe-eCCC----cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------
Q 016522          112 VMTCAFSPTGQSVACG-GLDS----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------  180 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  180 (388)
                      +....++|+|++++.+ +..|    .++++|+.++..      ....+..  .....+.|.+++..++.+...+      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence            4467899999998875 3333    599999998641      1112121  1223389999976655654333      


Q ss_pred             ----CeEEEEecCCCceE--EEeecccccCCccC-eEEEEeeCCCCcEEEEe-eCC---CceEEEECCCC---CcceEEE
Q 016522          181 ----QTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG-SCD---STARLWDTRVA---SRAVRTF  246 (388)
Q Consensus       181 ----g~v~i~d~~~~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~-~~d---g~i~i~d~~~~---~~~~~~~  246 (388)
                          ..|+.|.+.+....  ..+.    ...... ...+..++ ++++++.. ...   ..+.+.|+...   ......+
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe----~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFE----EPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             CCCCcEEEEEECCCChHhCeeEEe----ecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence                34788888876443  3331    122222 56778887 66665543 332   34777788763   2344444


Q ss_pred             ecccCCeeEEEEccCCCEEEEee---CCCcEEEEECCCCce--ee-EeeeccCCCCCCCeEEEEecCCCCEEEE-EecCC
Q 016522          247 HGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ--LQ-VYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNG  319 (388)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg  319 (388)
                      ......+....-+..+.+++...   ..+.|.-.++.....  .. .+....   ....+..+.  ..+.+|+. ...++
T Consensus       273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~--~~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVS--LFKDYLVLSYRENG  347 (414)
T ss_dssp             EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEE--EETTEEEEEEEETT
T ss_pred             eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEE--EECCEEEEEEEECC
Confidence            44444443333232444444332   345677778777653  12 222211   111244444  34455544 44444


Q ss_pred             --cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                        .|+++++..+.....+.   ..-.+.|..+...+++.
T Consensus       348 ~~~l~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  348 SSRLRVYDLDDGKESREIP---LPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEEEEETT-TEEEEEEE---SSSSSEEEEEES-TT-S
T ss_pred             ccEEEEEECCCCcEEeeec---CCcceEEeccCCCCCCC
Confidence              68899988334333332   22234456665555444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.22  E-value=0.067  Score=41.83  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=64.9

Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECC--CC----CcceEEEec---ccC-CeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTR--VA----SRAVRTFHG---HEG-DVNTVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~----~~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                      --+.++|+.+...+.++-+.+-.|.-||.+  ++    .+.+..++.   ... ..-.++...+|++.++.-..++|...
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            346788887566667777778888778843  22    122222221   111 12345666788988888889999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      |..+|+.+..+.....     .+++++|--
T Consensus       239 dp~tGK~L~eiklPt~-----qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTP-----QITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcCCC-----ceEEEEecC
Confidence            9999999999877543     499999963

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.20  E-value=0.21  Score=47.42  Aligned_cols=275  Identities=16%  Similarity=0.158  Sum_probs=147.8

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEEC--CCCCeeeEe--eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAI--KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      .|.-..|-.|..+|.++..||.+.-|.+  .++..-..-  .....++.--.|+..++.-+.+..|.-..+|..+..-  
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL--  662 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL--  662 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE--
Confidence            4555566667789999999999876654  444432222  3344556666676655444444455555566554311  


Q ss_pred             CCCCceeEEecccccceEE-EEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          145 DGNLPVSRMLSGHKGYVSC-CQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                            ... .-.-..+.. +.|+.+ .+..++++.. +.+++.-+..-+.+..-.    -.-......+++.+ ...++
T Consensus       663 ------v~s-pls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irt----vpl~~~prrI~~q~-~sl~~  729 (1096)
T KOG1897|consen  663 ------VYS-PLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRT----VPLGESPRRICYQE-SSLTF  729 (1096)
T ss_pred             ------EEe-ccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceee----ecCCCChhheEecc-cceEE
Confidence                  100 000011111 122222 1223444443 456666554432222111    12233455566665 33333


Q ss_pred             EEeeCC--------------CceEEEECCCCCcceEEEeccc-------CCeeEEEEccC-CCEEEEeeC----------
Q 016522          223 VSGSCD--------------STARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPD-GNRFGTGSD----------  270 (388)
Q Consensus       223 ~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~-~~~l~~~~~----------  270 (388)
                      .+.+..              ..++++|-++.    ..+..|+       ..+.++.|..| +.++++|..          
T Consensus       730 ~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf----~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~  805 (1096)
T KOG1897|consen  730 GVLSNRIESSAEYYGEEYEVSFLRVLDQNTF----EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPV  805 (1096)
T ss_pred             EEEecccccchhhcCCcceEEEEEEecCCce----eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcc
Confidence            333221              13555664433    2232232       13555568776 677777763          


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      .|.|.+|.......+.....   ..-.+.+.++.. -+|+++|.  -+..|++|++.+.+.+..-    ..+..++..+.
T Consensus       806 ~GRIivfe~~e~~~L~~v~e---~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e----~~~~~~~~aL~  875 (1096)
T KOG1897|consen  806 NGRIIVFEFEELNSLELVAE---TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIE----CNISNPIIALD  875 (1096)
T ss_pred             cceEEEEEEecCCceeeeee---eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhh----hcccCCeEEEE
Confidence            47788888777444433322   111122444432 25666654  3568999999888666554    57788899999


Q ss_pred             ECCCCCeEEEccCCCeEEEecc
Q 016522          351 LSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       351 ~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ..-.|..+++|..=+.+.+-.+
T Consensus       876 l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  876 LQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             EEecCcEEEEeeccceEEEEEE
Confidence            9999999999988777776543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.076  Score=48.71  Aligned_cols=191  Identities=8%  Similarity=0.088  Sum_probs=99.4

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP  168 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (388)
                      -.|+||+. +|..+..+....+.+..+.|+.+.. |++...+|++.||++-.......    ..........|..+.+..
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~----svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN----SVGFESQMSDIVECRFFH  137 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhccc----ccccccccCceeEEEEec
Confidence            45888885 5777766666666788999997765 55567899999999876331100    011112223344455554


Q ss_pred             CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCCcceEEE
Q 016522          169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTF  246 (388)
Q Consensus       169 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (388)
                      +|   ++.-..+|.+.+-+-........++..  .....+-.|....++.  ...++-....-...++...........+
T Consensus       138 ~G---Vavlt~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  138 NG---VAVLTVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             Cc---eEEEecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44   444445555554432222222222110  1111111232222211  1111111100001122222111122222


Q ss_pred             ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      ....+.+..+..||+.++|+.-..+|.|.+-+....+....+..
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            22235678899999999999999999999999887776666543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.18  E-value=0.13  Score=44.22  Aligned_cols=244  Identities=13%  Similarity=0.147  Sum_probs=117.7

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe---eeEe----eeCCccEEEEEECCC----CCEEEEeeCC-------
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK---THAI----KLPCAWVMTCAFSPT----GQSVACGGLD-------  130 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~l~~~~~d-------  130 (388)
                      ..++|+|.|||+.+++ ...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999877665 5699999999 44443   2122    123356899999994    3333333321       


Q ss_pred             -CcEEEEeCCCCCCCCC-CCceeEEecc---cccceEEEEEEeCCCceEEEeeCCC-------------eEEEEecCCCc
Q 016522          131 -SVCSIFNLNSPTDKDG-NLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGDQ-------------TCVLWDITTGL  192 (388)
Q Consensus       131 -g~i~vw~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg-------------~v~i~d~~~~~  192 (388)
                       ..|.-|.......... ...+......   ....-..|.|.|+| .+.++.+..+             .|.-.+.....
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence             2344454443310000 0011111121   22344569999998 4444443322             23323322110


Q ss_pred             ------------eEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCCceEEEECCCC--------------------
Q 016522          193 ------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVA--------------------  239 (388)
Q Consensus       193 ------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~--------------------  239 (388)
                                  ....+    ..+ -.....++|+|..+.++++- +.++.=.|.-+..+                    
T Consensus       160 p~dnP~~~~~~~~~~i~----A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIY----AYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             -TTSTTTTSTTSTTTEE----EE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             CCCCccccCCCceEEEE----EeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence                        00000    011 22346789998436655542 12221122211111                    


Q ss_pred             --------CcceEEEecccCCeeEEEEcc-------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522          240 --------SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       240 --------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                              ..+...+..| ..+..+.|..       .+.++++.-..+.|....+.....+....... ......+..++
T Consensus       235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~  312 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVA  312 (331)
T ss_dssp             TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEE
T ss_pred             cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEE
Confidence                    0133334433 4566677763       45566666666788888887554433222211 22233689999


Q ss_pred             ecCCCCEEEEEecCCcEE
Q 016522          305 FSISGRLLFAGYSNGDCY  322 (388)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~  322 (388)
                      +.|||.+.++...+|.|+
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            999999888877888775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.15  E-value=0.17  Score=45.32  Aligned_cols=118  Identities=12%  Similarity=0.273  Sum_probs=75.3

Q ss_pred             CCeeEEEeCCCC----CeEEEEeCCCcEEEEECC-----CCCeeeEeeeC--C---ccEEEEEECCCCCEEEEeeCCCcE
Q 016522           68 GKVYSLDWTSER----NRIVSASQDGRLIVWNAL-----TSQKTHAIKLP--C---AWVMTCAFSPTGQSVACGGLDSVC  133 (388)
Q Consensus        68 ~~v~~~~~~~~~----~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i  133 (388)
                      ..|..+.|.|-+    ..|........|.+|.+.     +.+.+..-..+  .   --...+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            359999999953    345555667899999874     22222211111  0   113467899999888876665554


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      .++++....     ..+...+ ...+-|.|.+|.+||.+++++.+..=.-++||-...
T Consensus       137 V~~sV~~d~-----srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDS-----SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCC-----ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            566665422     1123333 456889999999999877777776667789986543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.13  E-value=0.099  Score=42.26  Aligned_cols=198  Identities=12%  Similarity=0.060  Sum_probs=117.1

Q ss_pred             ceeeecccccc-CCeeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCcc-EEEEEECCCCCEEEEeeCCCc
Q 016522           57 LVCCRTLQGHA-GKVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        57 ~~~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      .+.+.++.... .-...+.|..+|.++-+.+.-|  .|+.+|+.+++.......+... --.++.. +++.....-.++.
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            45566655322 2456688877887888887766  7999999999988777665431 1223333 3455555667899


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ..+||..+-+       ....+.- .+.=..++  .++. .|+.+.....+..+|..+.+....+........-..++.+
T Consensus       112 ~f~yd~~tl~-------~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  112 GFVYDPNTLK-------KIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EEEEETTTTE-------EEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEEEccccce-------EEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            9999998633       3333322 23445555  4554 4666666778999999988777776543322333456777


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---------------ccCCeeEEEEccCCCEEEEee
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------------HEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      .+.  ++.+.|=.-....|...|..++ .....+..               ...-.+.|+++|..+.|...+
T Consensus       181 E~i--~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  181 EYI--NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEE--TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEE--cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            776  5666666666667777888776 44443321               134578999999766655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=97.10  E-value=0.045  Score=50.65  Aligned_cols=188  Identities=10%  Similarity=0.101  Sum_probs=88.3

Q ss_pred             CCCeEEEEeCCC------cEEEEECCCCCeeeEeee--CCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCC
Q 016522           78 ERNRIVSASQDG------RLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK  144 (388)
Q Consensus        78 ~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~  144 (388)
                      ++..++.||.++      .+..||..+.+-...-..  .......+  .-++..++.||.+     ..+..||..+..-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            445666666542      567788766544221111  11112222  2367777888765     34667877664311


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                           ....+...... .+++.. + +.+++.||.+      ..+..||+.+++....-.  .....  .-.++...  +
T Consensus       372 -----~~~~lp~~r~~-~~~~~~-~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r--~~~~~~~~--~  437 (534)
T PHA03098        372 -----EEPPLIFPRYN-PCVVNV-N-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH--YGGCAIYH--D  437 (534)
T ss_pred             -----eCCCcCcCCcc-ceEEEE-C-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc--cCceEEEE--C
Confidence                 11111111111 112222 2 4667777632      458889988765443221  11111  11223333  5


Q ss_pred             CcEEEEeeCCC--------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCc
Q 016522          219 SRMFVSGSCDS--------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH  283 (388)
Q Consensus       219 ~~~l~~~~~dg--------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  283 (388)
                      +.+++.|+.++        .+.+||..+.. ..+..+.........+.+  ++++++.|+.+     +.+.+||..+.+
T Consensus       438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            56777776532        37888877541 111111111111112222  66677777654     357777766543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.09  E-value=0.0026  Score=36.14  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      ..|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            35899999999999999999999999998 4443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.07  E-value=0.29  Score=46.43  Aligned_cols=81  Identities=26%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-C----CCCCCCc-eeEE--------ecccccceEEEEEEeCC--Cce
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-T----DKDGNLP-VSRM--------LSGHKGYVSCCQYVPDE--DTH  173 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~----~~~~~~~-~~~~--------~~~~~~~v~~~~~~~~~--~~~  173 (388)
                      -.|..+.++|+|++++..|..|.+ |..+... .    ...+... ..+.        ...+...|..+.|+|.+  +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            458899999999999999887644 4444321 0    0001111 1111        12345688999999974  567


Q ss_pred             EEEeeCCCeEEEEecCCC
Q 016522          174 LITSSGDQTCVLWDITTG  191 (388)
Q Consensus       174 l~~~~~dg~v~i~d~~~~  191 (388)
                      |+.-+.|+.+++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            899999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.014  Score=55.68  Aligned_cols=152  Identities=13%  Similarity=0.079  Sum_probs=94.5

Q ss_pred             ceEEEEEEeCCCceE-EEeeCCCeEEEEecCCCceEEEee------cccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522          160 YVSCCQYVPDEDTHL-ITSSGDQTCVLWDITTGLRTSVFG------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  232 (388)
                      ++..+...+|+.... +..+.+-.|..||+++-.......      ............++.|+|.-....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455555566542222 233344478899987643222110      0011223344567888886666677888899999


Q ss_pred             EEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      +..+......+..+. -....++++|+|.|+.++.|-..|++.-|... .+....+...... ....|.+++|-....++
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC-CCcceeEEEEecceeEE
Confidence            998876544444433 45568999999999999999999999988754 3333333222111 24569999998766665


Q ss_pred             EE
Q 016522          313 FA  314 (388)
Q Consensus       313 ~~  314 (388)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            54

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.01  E-value=0.041  Score=49.00  Aligned_cols=154  Identities=10%  Similarity=0.083  Sum_probs=89.0

Q ss_pred             cCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccC----CCEEEEeeCCCcEEEEECC
Q 016522          207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~  280 (388)
                      .++..++|.. +...+++.-  .+|.+++=|.    ..+..|    .-|..+.|.|-    ..-|.+.-....|.+|.+.
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds----~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS----KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCc----cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            4678889984 444444432  3444443332    223333    35889999983    3245555567889999985


Q ss_pred             C-----CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc--eEEeeccCCCCCcCCCeeEEEECC
Q 016522          281 T-----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       281 ~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .     ++.+............--...+.|+|....|++-.....-.++++...  +....+     ...+.|.|.+|.+
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-----~~~G~IhCACWT~  165 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-----KTSGLIHCACWTK  165 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-----cCCceEEEEEecC
Confidence            2     222222111111111111345789999998888766655556665433  333333     4567899999999


Q ss_pred             CCCeEEEcc-CCCeEEEeccce
Q 016522          354 DGSALCTGS-WDTNLKVSLHYY  374 (388)
Q Consensus       354 ~~~~l~s~~-~dg~v~iw~~~~  374 (388)
                      ||+.|+++- ..=.-+||+-..
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCch
Confidence            999887653 344566777543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.01  E-value=0.34  Score=46.17  Aligned_cols=296  Identities=12%  Similarity=0.059  Sum_probs=141.7

Q ss_pred             ccCCeeEEEeCCC----CCeEEEEe---CCCcEEEEECCCC-CeeeEeeeCC-ccEEEEE--ECCC-CCEEEEeeCCCcE
Q 016522           66 HAGKVYSLDWTSE----RNRIVSAS---QDGRLIVWNALTS-QKTHAIKLPC-AWVMTCA--FSPT-GQSVACGGLDSVC  133 (388)
Q Consensus        66 h~~~v~~~~~~~~----~~~l~t~~---~dg~v~iwd~~~~-~~~~~~~~~~-~~v~~~~--~~~~-~~~l~~~~~dg~i  133 (388)
                      .-++|.+++.-..    +..++|++   .||++++..-.-+ .......... ..+..+.  +.++ ..+++.+-. +.-
T Consensus       352 NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~-~eT  430 (1096)
T KOG1897|consen  352 NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFI-SET  430 (1096)
T ss_pred             cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEec-cce
Confidence            3457888877542    23566654   5889999864222 1222222221 2355555  4332 235555433 334


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ++..+...-       ......+.......+..+.-+...++=... ..|++++-. + ....+      .....++...
T Consensus       431 rvl~i~~e~-------ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~-~~~~W------~~p~~~ti~~  494 (1096)
T KOG1897|consen  431 RVLNISEEV-------EETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-G-LRSEW------RPPGKITIGV  494 (1096)
T ss_pred             EEEEEccce-------EEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-h-hhhcc------cCCCceEEEE
Confidence            455554311       011111112222222222222222222222 346666543 1 22222      1222333333


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--C----CEEEEeeCCCcEEEEE-CCCCceee
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--G----NRFGTGSDDGTCRLFD-IRTGHQLQ  286 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~----~~l~~~~~dg~i~i~d-~~~~~~~~  286 (388)
                      .+. +...++.++.++.+...++....-....-...+..|.|+.++|-  +    ++++.|..+..+.+.- +.+.....
T Consensus       495 ~~~-n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~  573 (1096)
T KOG1897|consen  495 VSA-NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT  573 (1096)
T ss_pred             Eee-cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence            333 44456666666777777776553111122234567999999983  2    2688887766544433 33333222


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc--ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      .. ......-...|.-.+|-.|..+|.++..||.+.-|-+  .++..-..-.  ..-...|+.=-.|+..++.-+.+..|
T Consensus       574 ~~-~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--~~lGt~P~~Lr~f~sk~~t~vfa~sd  650 (1096)
T KOG1897|consen  574 HE-QLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK--VTLGTQPISLRTFSSKSRTAVFALSD  650 (1096)
T ss_pred             ee-ccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc--cccCCCCcEEEEEeeCCceEEEEeCC
Confidence            22 1111212223555566667889999999998876654  4443221110  01223456555676655544444556


Q ss_pred             CeEEEeccceeeeecccc
Q 016522          365 TNLKVSLHYYIFVLMPCH  382 (388)
Q Consensus       365 g~v~iw~~~~~~~~~~~~  382 (388)
                      .=.-+|........+|++
T Consensus       651 rP~viY~~n~kLv~spls  668 (1096)
T KOG1897|consen  651 RPTVIYSSNGKLVYSPLS  668 (1096)
T ss_pred             CCEEEEecCCcEEEeccc
Confidence            666666665555555544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.97  E-value=0.18  Score=42.25  Aligned_cols=279  Identities=10%  Similarity=0.041  Sum_probs=124.0

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eC---CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      ...+.+|.|..+..-+++|. .+.|. -..+.|+.-....  ..   .....++.|..+ ..+++| ..+ +.+...+.+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTT
T ss_pred             CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCC
Confidence            34799999996555566654 45432 2222333222211  11   223667777543 344444 444 333333332


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                      .    .+........-.+....+....++  ....++..|.|..=. ..++.-....    ......+..+..++ ++.+
T Consensus        91 ~----tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~----~~~~gs~~~~~r~~-dG~~  158 (302)
T PF14870_consen   91 K----TWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVV----SETSGSINDITRSS-DGRY  158 (302)
T ss_dssp             S----S-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-----S----EEEEEE-T-TS-E
T ss_pred             C----CcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcc----cCCcceeEeEEECC-CCcE
Confidence            2    111111111112233344444443  344445556544322 2232222221    34557788888787 8888


Q ss_pred             EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee--ccCCCCCCC
Q 016522          222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPH  299 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~  299 (388)
                      ++++.......-||.-.. .-...-......|..+.|.|++.+.+.+ ..|.|+.=+...  ....+..  .........
T Consensus       159 vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~  234 (302)
T PF14870_consen  159 VAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYG  234 (302)
T ss_dssp             EEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-
T ss_pred             EEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCcee
Confidence            888776666667876532 1112222245689999999998766654 888888877222  1222211  111122334


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      +..++|.+++...++|+ .|.+ +.....++.-...... ..-...+..|.|.++.+-++ -+.+|.|-=|
T Consensus       235 ~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  235 ILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG-TTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             eEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc-cCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            89999999887777665 4433 3344455544333211 23345688888876554444 4568877544

>PHA03098 kelch-like protein; Provisional

Probab=96.93  E-value=0.12  Score=47.91  Aligned_cols=190  Identities=9%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             CCCCEEEEeeCCC------cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEe
Q 016522          119 PTGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWD  187 (388)
Q Consensus       119 ~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d  187 (388)
                      .++..++.||.++      .+..||..+..-.     ....+........ ++.. + +.+++.||.+     ..+..||
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~~R~~~~-~~~~-~-~~lyv~GG~~~~~~~~~v~~yd  364 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-----KVPELIYPRKNPG-VTVF-N-NRIYVIGGIYNSISLNTVESWK  364 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-----ECCCCCcccccce-EEEE-C-CEEEEEeCCCCCEecceEEEEc
Confidence            3566677776543      4677777664311     1111111111111 2222 2 4677777765     3477888


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecccCC--eeEEEEc
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGD--VNTVKFF  259 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~  259 (388)
                      ..+++....-.  .  .....-.+++..  ++.+++.|+.+      ..+..||+.+..  .........+  -.+++ .
T Consensus       365 ~~~~~W~~~~~--l--p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~-~  435 (534)
T PHA03098        365 PGESKWREEPP--L--IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAI-Y  435 (534)
T ss_pred             CCCCceeeCCC--c--CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEE-E
Confidence            88765433221  1  111111222322  56777777742      357888876541  1111111100  11222 2


Q ss_pred             cCCCEEEEeeCCC--------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEc
Q 016522          260 PDGNRFGTGSDDG--------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT  326 (388)
Q Consensus       260 ~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~  326 (388)
                      .++.+++.|+.++        .+.+||..+.+-...-.... +  ......+.+  +++.++.|+.+     +.+.+||.
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-P--RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-c--cccceEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence            2566667776432        38888887654332211110 1  011122222  66666777654     46888887


Q ss_pred             ccce
Q 016522          327 LLAK  330 (388)
Q Consensus       327 ~~~~  330 (388)
                      .+.+
T Consensus       511 ~~~~  514 (534)
T PHA03098        511 KTNT  514 (534)
T ss_pred             CCCE
Confidence            7654

>PHA02790 Kelch-like protein; Provisional

Probab=96.89  E-value=0.17  Score=45.99  Aligned_cols=185  Identities=9%  Similarity=-0.003  Sum_probs=85.1

Q ss_pred             CCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCCCCCCCce
Q 016522           78 ERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        78 ~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~  150 (388)
                      ++..++.||.++     .+..||..+++-...-..+..........-++...+.||.++  .+..|+...+.     +..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-----W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-----WVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe-----EEE
Confidence            345667777543     466788766543222111111111111224677778887643  57777765432     111


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                      ...+....... +++. -+ +.+.+.||.++   .+..||.++......-+  .  .....-.+++..  ++.+.+.|+ 
T Consensus       346 ~~~l~~~r~~~-~~~~-~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m--~~~r~~~~~~~~--~~~IYv~GG-  415 (480)
T PHA02790        346 MPSLLKPRCNP-AVAS-IN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--T--YYPHYKSCALVF--GRRLFLVGR-  415 (480)
T ss_pred             CCCCCCCCccc-EEEE-EC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCC--C--CCccccceEEEE--CCEEEEECC-
Confidence            11111111111 1222 22 46677777553   47789988765443221  1  111111223222  567777774 


Q ss_pred             CCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCC
Q 016522          228 DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRT  281 (388)
Q Consensus       228 dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  281 (388)
                        .+.+||..+.. ..+..+.........+.+  ++++.+.|+.+     ..+..||..+
T Consensus       416 --~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        416 --NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             --ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence              57788886541 111111111112222222  66777777754     2345555443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.77  E-value=0.34  Score=42.61  Aligned_cols=276  Identities=11%  Similarity=0.011  Sum_probs=146.6

Q ss_pred             CCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEEC---C-CCCEEEEeeCCCcEEEEeCCCCCC--CCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFS---P-TGQSVACGGLDSVCSIFNLNSPTD--KDGN  147 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~~dg~i~vw~~~~~~~--~~~~  147 (388)
                      ...|++||..|.++||+.....     .+.. ..-..+|..++.-   + .....++.-.-..+.||.+.....  ..+.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3689999999999999985433     1112 2233567777653   2 233344445667888998843221  1112


Q ss_pred             CceeEEeccccc--ceEEEEEEeCC----CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522          148 LPVSRMLSGHKG--YVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       148 ~~~~~~~~~~~~--~v~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                      .........|.-  ....+++-|-|    ..+++.-+.||.+.+|+-+.-.....++.      .--...+++.+ ..+.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgPl~Y~~-~tDs  188 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGPLCYCP-RTDS  188 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcCeEEee-cCCE
Confidence            222233333432  23344444432    36788899999999999766554444422      22233466776 6678


Q ss_pred             EEEeeCCCceEEEECCCC--------------------CcceEEEec-ccCCee---EEEEccCCCEEEEeeCCCcEEEE
Q 016522          222 FVSGSCDSTARLWDTRVA--------------------SRAVRTFHG-HEGDVN---TVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~-~~~~i~---~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                      |++++.+..+.-|....-                    ++....+.- -...+.   .+.++.....+++-+. ..+.+.
T Consensus       189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l  267 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCL  267 (418)
T ss_pred             EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEE
Confidence            888888888888875321                    000000000 011222   2333323333333332 345555


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEe------cCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAF------SISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      +. +|.......... .    +.....|      .++. ..+++++.++.+.||.  ..+.++..    +....+| ++.
T Consensus       268 ~~-~G~l~~~krLd~-~----p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA----~l~~~PV-al~  334 (418)
T PF14727_consen  268 KD-NGSLRFQKRLDY-N----PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSA----QLPHVPV-ALS  334 (418)
T ss_pred             cC-CCeEEEEEecCC-c----eeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEec----CCCCCCE-EEE
Confidence            54 343332222211 1    1121222      1221 2588899999999996  45555554    2222333 443


Q ss_pred             EC---CCCCeEEEccCCCeEEEeccceee
Q 016522          351 LS---ADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       351 ~~---~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      ..   .-...|++-+.+|.+.+--.-.++
T Consensus       335 v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  335 VANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             ecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence            33   334578999999999987644333

>PRK10115 protease 2; Provisional

Probab=96.73  E-value=0.57  Score=44.69  Aligned_cols=242  Identities=10%  Similarity=0.003  Sum_probs=117.7

Q ss_pred             CeeEEEeCCCCCeEEEEeC-----CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------CcEEEEe
Q 016522           69 KVYSLDWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFN  137 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~  137 (388)
                      .+..+.++||+++|+.+..     ...+++-|+.++..+...-....  ..++|.+|++.|+.+..+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4777899999998875532     23688899988864322211111  458999999877766442      3577777


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEe--eCCCeEEEEecC--CCceEEEeecccccCCccCeEEE
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITS--SGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~--~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +.++...     ....+........-..+.+ ++..+++.+  ..++.+.+++..  ++.......     ........+
T Consensus       206 lgt~~~~-----d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~  275 (686)
T PRK10115        206 IGTPASQ-----DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-----RRKDHEYSL  275 (686)
T ss_pred             CCCChhH-----CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-----CCCCCEEEE
Confidence            7775211     1222222222222223333 554333322  234578888843  333222221     111222222


Q ss_pred             EeeCCCCcEEEEeeCC-C--ceEEEECCCCCcceEEEecc-c-CCeeEEEEccCCCEEEEeeCCCcEEEEECCC-Cceee
Q 016522          213 SISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQ  286 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~  286 (388)
                      . +. +..+++....+ .  .|...++... .....+..+ . ..+..+.+. .+.++++...+|.-+++-+.. +....
T Consensus       276 ~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~  351 (686)
T PRK10115        276 D-HY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI  351 (686)
T ss_pred             E-eC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence            2 32 33343333322 2  3444444422 223344444 2 367778877 334555666677655544332 22222


Q ss_pred             EeeeccCCCCCCCeEEEEec--CCCC-EEEEEec---CCcEEEEEcccce
Q 016522          287 VYYQQHGENEIPHVTSIAFS--ISGR-LLFAGYS---NGDCYVWDTLLAK  330 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~~---dg~i~i~d~~~~~  330 (388)
                      .+.... .   ..+..+.++  +++. ++++.++   -+.++.+|..+++
T Consensus       352 ~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        352 GIAFDD-P---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EecCCC-C---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            222110 1   112333344  4444 4433332   4578889987754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.039  Score=52.91  Aligned_cols=150  Identities=9%  Similarity=-0.037  Sum_probs=93.8

Q ss_pred             cEEEEEECCCCCEEEEe--eCCCcEEEEeCCCCCCCC----CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522          111 WVMTCAFSPTGQSVACG--GLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  184 (388)
                      ++..+...+|+...++.  +.+-.|..||++.-....    ..+..............++.|+|.=....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45566667776655544  334478899987633111    001111122222345677889886555577888899999


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEcc
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFP  260 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~  260 (388)
                      +..+........-     .......++++|+| .+..++.|...|++.-|...-.  ....+..    ....|.+|+|-.
T Consensus       182 V~~~~~~~~~v~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhcc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEec
Confidence            8876544332221     25567889999999 8899999999999998876422  1111111    146789999987


Q ss_pred             CCCEEEEe
Q 016522          261 DGNRFGTG  268 (388)
Q Consensus       261 ~~~~l~~~  268 (388)
                      ...++++-
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence            66666553

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.59  E-value=0.74  Score=44.20  Aligned_cols=198  Identities=16%  Similarity=0.202  Sum_probs=114.1

Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccccCC---ccCeEEEEeeC---------------CCCcEEEEeeCCCceEE
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH---TADVLSVSISG---------------SNSRMFVSGSCDSTARL  233 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~---------------~~~~~l~~~~~dg~i~i  233 (388)
                      ..++.++.++.|.-.|..+++.+..+........   ......+.+..               .....++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            3577778889999999999999888754321110   00112222221               12346778888999999


Q ss_pred             EECCCCCcceEEEecccCCe-------------eEEEEcc--CCCEEEEeeC----------CCcEEEEECCCCceeeEe
Q 016522          234 WDTRVASRAVRTFHGHEGDV-------------NTVKFFP--DGNRFGTGSD----------DGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  288 (388)
                      .|.+++ +.+-.+.. .+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       275 LDA~TG-k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       275 LDADTG-KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EECCCC-CEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999888 44433321 1111             0112222  2445666643          688999999999998887


Q ss_pred             eeccCCCC-------------CCCeEEEEecCCCCEEEEEec------------------CCcEEEEEcccceEEeeccC
Q 016522          289 YQQHGENE-------------IPHVTSIAFSISGRLLFAGYS------------------NGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       289 ~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~  337 (388)
                      ........             ...-...++++....++.+..                  .++|.-.|..+++....++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            64211100             001133456665555544321                  24567778889998887753


Q ss_pred             CCCCcC-------CCeeEEEECC-CCC---eEEEccCCCeEEEeccc
Q 016522          338 LQNSHE-------GRITCLGLSA-DGS---ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       338 ~~~~~~-------~~v~~~~~~~-~~~---~l~s~~~dg~v~iw~~~  373 (388)
                      .  .|.       ....=+.+.. +|+   .++.++.+|.+.+.+..
T Consensus       433 ~--~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       433 V--HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             c--CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence            1  121       1111122322 553   78889999999888754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=96.56  E-value=0.49  Score=43.10  Aligned_cols=142  Identities=8%  Similarity=-0.006  Sum_probs=68.6

Q ss_pred             CceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEE
Q 016522          171 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRT  245 (388)
Q Consensus       171 ~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~  245 (388)
                      +.+.+.||.+  ..+..||..++.....-  .+  .....-.+++..  ++.+.+.|+.++   .+..||.++.  ....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~--~l--~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~--~W~~  390 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMP--SL--LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD--QWQF  390 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECC--CC--CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence            4667777754  35788888766443321  11  111111223332  678888887654   4667887643  1111


Q ss_pred             Eec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC----
Q 016522          246 FHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----  318 (388)
Q Consensus       246 ~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  318 (388)
                      ...   .......+.  -++++.+.|+   .+.+||..+.+-........ +  ..... ++ .-+|+..++|+.+    
T Consensus       391 ~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~-~--r~~~~-~~-v~~~~IYviGG~~~~~~  460 (480)
T PHA02790        391 GPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTWTLIDDPIY-P--RDNPE-LI-IVDNKLLLIGGFYRGSY  460 (480)
T ss_pred             CCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcEeEcCCCCC-C--ccccE-EE-EECCEEEEECCcCCCcc
Confidence            111   111111222  2566666663   57788887654332211111 1  11112 22 2366777777654    


Q ss_pred             -CcEEEEEcccce
Q 016522          319 -GDCYVWDTLLAK  330 (388)
Q Consensus       319 -g~i~i~d~~~~~  330 (388)
                       ..+..||..+++
T Consensus       461 ~~~ve~Yd~~~~~  473 (480)
T PHA02790        461 IDTIEVYNNRTYS  473 (480)
T ss_pred             cceEEEEECCCCe
Confidence             246667765543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.51  E-value=0.39  Score=42.03  Aligned_cols=150  Identities=13%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             cCeEEEEeeCCCCcEEEEee-----------CCC-ceEEEECCCCC-c--ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522          207 ADVLSVSISGSNSRMFVSGS-----------CDS-TARLWDTRVAS-R--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      .....++|.+ +++++++-.           ..+ .|.+++-.... .  ....+.........+++.+++ +++ ++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            4556778887 667666542           223 67666543321 1  123333333456889999888 444 4444


Q ss_pred             CcEEEEECCCCc----eeeEeeeccCCC---CCCCeEEEEecCCCCEEEEEecC-------------------CcEEEEE
Q 016522          272 GTCRLFDIRTGH----QLQVYYQQHGEN---EIPHVTSIAFSISGRLLFAGYSN-------------------GDCYVWD  325 (388)
Q Consensus       272 g~i~i~d~~~~~----~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d  325 (388)
                      ...++.|.....    ....+.......   .......++|.|||.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            333343443211    111221111111   12347789999999855543311                   4456666


Q ss_pred             cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      ...++.. .+.   .++ .....++|+++|+++++-..+
T Consensus       171 pdg~~~e-~~a---~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLR-VVA---HGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEE-EEe---cCc-CCCccceECCCCCEEEEccCC
Confidence            5544432 221   233 345789999999887765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=0.27  Score=45.38  Aligned_cols=217  Identities=14%  Similarity=0.145  Sum_probs=105.9

Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      -.|+||+....-       +....-.| +.+..+.|+.+  ..|++...+|++.+|++-.... ..... ........|.
T Consensus        64 ~~I~If~~sG~l-------L~~~~w~~-~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~i-e~~sv-g~e~~~~~I~  131 (829)
T KOG2280|consen   64 PYIRIFNISGQL-------LGRILWKH-GELIGMGWSDD--EELICVQKDGTVHVYGLLGEFI-ESNSV-GFESQMSDIV  131 (829)
T ss_pred             eeEEEEeccccc-------hHHHHhcC-CCeeeecccCC--ceEEEEeccceEEEeecchhhh-ccccc-ccccccCcee
Confidence            357777776522       22222233 37788999985  4688999999999999854322 22111 0022334455


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCC---EEEEee-CCCcEEEEECCCCc
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGN---RFGTGS-DDGTCRLFDIRTGH  283 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~  283 (388)
                      .+.+.. +|  +++-..+|.+.+-.-... .....+..   ...+-.|-+..+++.   .++-.. ..+ ..++......
T Consensus       132 ec~~f~-~G--Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~  206 (829)
T KOG2280|consen  132 ECRFFH-NG--VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR  206 (829)
T ss_pred             EEEEec-Cc--eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc
Confidence            555543 43  233333455544332111 12222221   111112222222211   111111 111 0111111111


Q ss_pred             -eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC-------
Q 016522          284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-------  355 (388)
Q Consensus       284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------  355 (388)
                       ....+..     ..+.+..+..||+.++|+.=...|.|.+-+....+....+..   ....+...++|.-+.       
T Consensus       207 ~q~~~~~~-----~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~---~~~~~p~qm~WcgndaVvl~~e  278 (829)
T KOG2280|consen  207 VQLHALSW-----PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC---TDHDPPKQMAWCGNDAVVLSWE  278 (829)
T ss_pred             ccccccCC-----CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC---CCCCchHhceeecCCceEEEEe
Confidence             1111111     123488899999999999999999999999887777666631   122233366665433       


Q ss_pred             -CeEEEccCCCeEEEecc
Q 016522          356 -SALCTGSWDTNLKVSLH  372 (388)
Q Consensus       356 -~~l~s~~~dg~v~iw~~  372 (388)
                       .+.+.|-..+.|.+|..
T Consensus       279 ~~l~lvgp~gd~V~f~yd  296 (829)
T KOG2280|consen  279 VNLMLVGPPGDSVQFYYD  296 (829)
T ss_pred             eeEEEEcCCCCccccccC
Confidence             23444444455555543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.44  E-value=0.17  Score=46.69  Aligned_cols=126  Identities=16%  Similarity=0.172  Sum_probs=77.8

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEE--CCCCCEEEEeeCCCcEEEEe
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAF--SPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vw~  137 (388)
                      .++..--...+-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|  .|+|+.+++.|..+.|.+|.
T Consensus        23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3343334455556555555444444445589999998877554433 34567999998  46899999999999999987


Q ss_pred             CCCCCC--CCCCCceeEE--ecccc-cceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          138 LNSPTD--KDGNLPVSRM--LSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       138 ~~~~~~--~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      -.....  ....+...+.  +..|+ .+|.+..|.++| . +++|+ .+.+.|+|-.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW  156 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence            532110  0111112222  33444 689999999987 3 44443 3568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.42  E-value=0.95  Score=43.48  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=91.7

Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccc----c---CCccCeEEEEeeC-CCCcEEEEeeC----------CCceEE
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQ----S---GHTADVLSVSISG-SNSRMFVSGSC----------DSTARL  233 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~---~~~~~i~~~~~~~-~~~~~l~~~~~----------dg~i~i  233 (388)
                      ..++.++.|+.+.-.|.++++....+.....    .   .....-..+.-.| -.+..+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            4688889999999999999998877632100    0   0000000011111 01234555542          688999


Q ss_pred             EECCCCCcceEEEe-cc---------------c-CCe-eEEEEccCCCEEEEee------------------CCCcEEEE
Q 016522          234 WDTRVASRAVRTFH-GH---------------E-GDV-NTVKFFPDGNRFGTGS------------------DDGTCRLF  277 (388)
Q Consensus       234 ~d~~~~~~~~~~~~-~~---------------~-~~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~  277 (388)
                      +|.++++ .+-.+. +.               . ..+ ...+++|+..+++.+.                  ..+.|.-.
T Consensus       341 ~Da~TGk-l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       341 FDVNTGA-LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EECCCCc-EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            9999883 332221 10               0 011 2345555444444422                  13457777


Q ss_pred             ECCCCceeeEeeeccCCCCC----CCeEEEEecC-CCC---EEEEEecCCcEEEEEcccceEEeec
Q 016522          278 DIRTGHQLQVYYQQHGENEI----PHVTSIAFSI-SGR---LLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      |.++++....+...+.+...    ....-+.+.. +|+   .++.++.+|.++++|..+++.+...
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            88888888777553322110    1111122322 553   8899999999999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.39  E-value=0.37  Score=44.98  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             eEEEEEEeC-CCceEEEeeCCCeEEEEecCCC-----------c---eEEEeecccccCCccCeEEEEee--CCCCcEEE
Q 016522          161 VSCCQYVPD-EDTHLITSSGDQTCVLWDITTG-----------L---RTSVFGGEFQSGHTADVLSVSIS--GSNSRMFV  223 (388)
Q Consensus       161 v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~-----------~---~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~  223 (388)
                      |+.|....- +...|+.+..||.|.+|.+++-           .   ......+.+.......+.+++++  . ..+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence            444443332 2457889999999999975321           0   00011112223455688999998  6 778999


Q ss_pred             EeeCCCceEEEECCCCC--cceEEEecccCCeeEEEEccCC---C---EEEEeeCCCcEEEEEC
Q 016522          224 SGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI  279 (388)
Q Consensus       224 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  279 (388)
                      ++++...|.||-.....  .....-..+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99999988888665421  1111122366789999998733   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.33  E-value=0.0014  Score=56.36  Aligned_cols=150  Identities=12%  Similarity=0.169  Sum_probs=104.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG  191 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  191 (388)
                      .....|-+.+.-++.++.+..+..||-....         .......+....++|..+++..++.+-..+.+.+||+.+.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcce---------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence            3456788888779999989889899865421         1112234556678999888888888899999999999865


Q ss_pred             ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      .....-     .+....-.-+.|++ ....++.+...|.+.+++.... +.+...-.|...++++++.+.+. .+.++.|
T Consensus       108 ytqqLE-----~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~-vil~dcd  179 (615)
T KOG2247|consen  108 YTQQLE-----SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDY-VILCDCD  179 (615)
T ss_pred             hHHHHh-----ccCcchHHHHhhcc-CCccccccccccceEEEeccch-hhhhhhcccccceeEEEecccce-eeecCcH
Confidence            322211     12222222267887 7778888899999999998877 44444444888999999998764 5566666


Q ss_pred             CcEEEEE
Q 016522          272 GTCRLFD  278 (388)
Q Consensus       272 g~i~i~d  278 (388)
                      ..+.+-.
T Consensus       180 ~~L~v~~  186 (615)
T KOG2247|consen  180 NTLSVTT  186 (615)
T ss_pred             HHHHHhh
Confidence            6554443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.19  Score=43.48  Aligned_cols=109  Identities=12%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      ....++|.++.|++|.+.||+--.|..|.+++....+........+ ......|...+|+.+ .-+|..+..| +.+|..
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            3456799999999999999999999999999974433332222211 222334888999866 4555554443 666654


Q ss_pred             ccce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          327 LLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       327 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ...+ .+...    +.|...|+-..|.++-+.++-++
T Consensus       140 ~pekrslRlV----ks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  140 LPEKRSLRLV----KSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             chhhhhhhhh----hhcccCccEEEEccccceEeeec
Confidence            3322 22222    57788888888988877554443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.28  E-value=0.32  Score=44.89  Aligned_cols=114  Identities=15%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc--cCCCEEEEeeCCCcEEEEECC-----
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIR-----  280 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~-----  280 (388)
                      .+.-+..+. -++..++.+....+.|||.+...-.....-...+.|..+.|.  |+++.+++.+....|.+|.-.     
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            334444443 444444555556899999987632222222346789999986  589999999999999998642     


Q ss_pred             ----CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          281 ----TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       281 ----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                          +..++..+.....  ...+|.+..|.++|..++.+  ++.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~--T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSH--TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecC--CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence                1223333322211  22358899999998665544  346888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.22  E-value=0.6  Score=40.03  Aligned_cols=166  Identities=16%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCc------eEEEECCCCC---cceE-----EEecccC--------CeeEEEEccCCC
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVAS---RAVR-----TFHGHEG--------DVNTVKFFPDGN  263 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~---~~~~-----~~~~~~~--------~i~~~~~~~~~~  263 (388)
                      -+.+..+.+.+.++ .+++.+.+|.      +..+++....   ..+.     .+....+        ..-+|++.+++.
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35567788876344 4455555666      5555544310   0111     1111111        344788877888


Q ss_pred             EEEEeeCC------CcEEEEECCCCceeeEeeec----------cCCCCCCCeEEEEecCCCCEEEEEec-----CC--c
Q 016522          264 RFGTGSDD------GTCRLFDIRTGHQLQVYYQQ----------HGENEIPHVTSIAFSISGRLLFAGYS-----NG--D  320 (388)
Q Consensus       264 ~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~  320 (388)
                      ++++.-.+      ..|..++.. ++....+...          .........-+++++|+|+.|+++.+     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77776666      778888876 6655444211          11234456889999999996666543     22  1


Q ss_pred             -------EEE--EEccc-ceEEeeccCCCCC-----cCCCeeEEEECCCCCeEEEc-----cCCCeEEEeccc
Q 016522          321 -------CYV--WDTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCTG-----SWDTNLKVSLHY  373 (388)
Q Consensus       321 -------i~i--~d~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~~~  373 (388)
                             +++  ||..+ +.....+......     ....|+.+.+-+++++|+.=     +....++|+...
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   444  45443 2222222111121     45678999999999877652     235567777654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.15  E-value=0.93  Score=40.69  Aligned_cols=276  Identities=13%  Similarity=0.064  Sum_probs=138.6

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      ..+|.++.+..+| .+..|+.|| +..||..+++.++.-.... .+|..+.-+-.|+ +.+|+.+| +.+.+.+...-. 
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s-  238 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS-  238 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc-
Confidence            4578888888877 566777777 6667878877776555444 4565555555554 56666666 566665541100 


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                           ..-..-..+.|..+.-..+  ..+-.|+..|..+.--.+.+-.....  .. ...-+.|.++.... ++ -+-++
T Consensus       239 -----n~~~~lp~~~I~ll~qD~q--G~lWiGTenGl~r~~l~rq~Lq~~~~--~~-~l~~S~vnsL~~D~-dG-sLWv~  306 (671)
T COG3292         239 -----NWGPMLPSGNILLLVQDAQ--GELWIGTENGLWRTRLPRQGLQIPLS--KM-HLGVSTVNSLWLDT-DG-SLWVG  306 (671)
T ss_pred             -----ccCCCCcchheeeeecccC--CCEEEeecccceeEecCCCCcccccc--cc-CCccccccceeecc-CC-CEeee
Confidence                 0001112233443333333  34666777665443222222111111  00 12223445554443 33 35566


Q ss_pred             eCCCceEEEECCCCCcceEEEecccC-CeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEE
Q 016522          226 SCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  302 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~  302 (388)
                      +.+|.+++-+-. . .....+....+ .+...+..|  .+..+--...-|.+.+-+-.++..........+.    .|+.
T Consensus       307 t~~giv~~~~a~-w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~----nit~  380 (671)
T COG3292         307 TYGGIVRYLTAD-W-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM----NITT  380 (671)
T ss_pred             ccCceEEEecch-h-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc----ccch
Confidence            666666554432 1 11111211111 111122222  1222222222334444454555555544333222    3677


Q ss_pred             EEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          303 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      +++..+| .+-.|+...-+.-|+.++ +.......   ....++|..|.=.|+++ |..|+.+|.++.=
T Consensus       381 ~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~a---gl~ss~V~aived~dns-LWIGTs~Glvk~~  444 (671)
T COG3292         381 TLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDA---GLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD  444 (671)
T ss_pred             hhhccCC-cEEEEecccchhhhccCCccccccccc---CCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence            7777644 455566664566666555 33322221   34567888888889888 8888889987654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.14  E-value=0.0049  Score=57.14  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--CCceEEEeecccccCCc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHT  206 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~  206 (388)
                      ..+-+++-+....-      ......++..+.+-.+.|-...-..+.  -.-|.+.+||+.  .|+....+.........
T Consensus       109 ~~~~vrvaN~~~sm------~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~g  180 (1283)
T KOG1916|consen  109 MENGVRVANQEPSM------RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYG  180 (1283)
T ss_pred             hhhhhhhccCcchh------HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCC
Confidence            34556666655411      111345566777777777543211122  333667888765  33333222222223334


Q ss_pred             cCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          207 ADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       207 ~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      ..+.-+.|.|  .+.-++..+..++.+++.......+  ..+.+|...+..++|.
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~  233 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFF  233 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHH
Confidence            4445566655  1446677777888888887765422  3344577666655543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.04  E-value=0.92  Score=39.61  Aligned_cols=197  Identities=13%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             ceEEEeeCCCeEEEEecCCC----ceEEEeecc-cc-cCCccCeEEEEeeCCCCcEEEEee--C----CCceEEEECCCC
Q 016522          172 THLITSSGDQTCVLWDITTG----LRTSVFGGE-FQ-SGHTADVLSVSISGSNSRMFVSGS--C----DSTARLWDTRVA  239 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~l~~~~--~----dg~i~i~d~~~~  239 (388)
                      .+++-|-..+.|+|.|+.+.    +....+..+ .. ...-.....+.+-| ++.+++++-  .    -|.+.++|-.+.
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            33444557889999998854    333333221 00 11112233444555 677777632  2    245777776654


Q ss_pred             CcceEEEecccC---CeeEEEEccCCCEEEEeeC--------------------CCcEEEEECCCCceeeEeeeccCCCC
Q 016522          240 SRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSD--------------------DGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       240 ~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                       ...........   .-..+-|.|..+.+++..-                    ..++.+||+.+.+.++++.....   
T Consensus       168 -~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~---  243 (461)
T PF05694_consen  168 -EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE---  243 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---
T ss_pred             -cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---
Confidence             34444433221   2345667777777777542                    35799999999999998866421   


Q ss_pred             CCCeEEEEec--CCCCEEEEEec-CCcEEEEEc-ccce----EEeeccCCC-------------CCcCCCeeEEEECCCC
Q 016522          297 IPHVTSIAFS--ISGRLLFAGYS-NGDCYVWDT-LLAK----VVLNLGSLQ-------------NSHEGRITCLGLSADG  355 (388)
Q Consensus       297 ~~~i~~~~~~--~~~~~l~~~~~-dg~i~i~d~-~~~~----~~~~~~~~~-------------~~~~~~v~~~~~~~~~  355 (388)
                      ......+.|.  |+..+=++|+. .++|..|-- ..++    .+..+....             ..-..-|++|..|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            1124455554  44554444332 344554432 3322    222221100             0012458999999999


Q ss_pred             CeEEEcc-CCCeEEEeccc
Q 016522          356 SALCTGS-WDTNLKVSLHY  373 (388)
Q Consensus       356 ~~l~s~~-~dg~v~iw~~~  373 (388)
                      ++|...+ .+|.|+.|+..
T Consensus       324 rfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-S
T ss_pred             CEEEEEcccCCcEEEEecC
Confidence            9997766 48999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.02  E-value=0.95  Score=39.62  Aligned_cols=149  Identities=11%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             CeeEEEeCCCCCeEEEEe-----------CCC-cEEEEECCC--CCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           69 KVYSLDWTSERNRIVSAS-----------QDG-RLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.++|  |+++.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            567899999998777643           223 677776432  332  23333334456889999988  444444433


Q ss_pred             EEEEeCCCCCCCCCCCc-eeEEecc----cccceEEEEEEeCCCceEEEeeC------------------CCeEEEEecC
Q 016522          133 CSIFNLNSPTDKDGNLP-VSRMLSG----HKGYVSCCQYVPDEDTHLITSSG------------------DQTCVLWDIT  189 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~------------------dg~v~i~d~~  189 (388)
                      .++.+.+.......... +...+..    +......+.|.|+|.-++..++.                  .|.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            33434443221111111 1122222    13446789999987433333321                  1446666665


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                      ++.. ..+     ...-.....++|++ .++++++-.
T Consensus       173 g~~~-e~~-----a~G~rnp~Gl~~d~-~G~l~~tdn  202 (367)
T TIGR02604       173 GGKL-RVV-----AHGFQNPYGHSVDS-WGDVFFCDN  202 (367)
T ss_pred             CCeE-EEE-----ecCcCCCccceECC-CCCEEEEcc
Confidence            5443 222     22234567889998 777776644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.98  E-value=0.34  Score=42.69  Aligned_cols=146  Identities=15%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC------CcEEEEeeCCCceEEEECCCCCc
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR  241 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~  241 (388)
                      .+..-++..|+....++-.|++.|+.+..+     ..+..-  -+.+.|..      ...-++|-.+..|.-.|.+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW-----~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN  549 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEW-----DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN  549 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEe-----ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence            333333456777778889999999999888     344433  45555521      12233455667777778776543


Q ss_pred             ceEEEecccCCeeEEEEcc----CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          242 AVRTFHGHEGDVNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       242 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      .+.... .....+.-.|+.    ...++++++..|.|++||- -+....+..+..    ...|..+..+.+|+++++.+.
T Consensus       550 Ki~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDR-ig~rAKtalP~l----G~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         550 KIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDR-IGKRAKTALPGL----GDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ceeeee-ehhccccccccccccccCceEEEecCCCceeeehh-hcchhhhcCccc----ccceeeeEeecCCcEEEEeec
Confidence            332222 112222223332    4568999999999999994 344433333322    235888999999998887765


Q ss_pred             CCcEEEEEcc
Q 016522          318 NGDCYVWDTL  327 (388)
Q Consensus       318 dg~i~i~d~~  327 (388)
                      . .+.+-|+.
T Consensus       624 ~-yllL~d~~  632 (776)
T COG5167         624 N-YLLLTDVP  632 (776)
T ss_pred             c-eEEEEecc
Confidence            4 66666653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.95  E-value=0.83  Score=38.35  Aligned_cols=238  Identities=13%  Similarity=0.081  Sum_probs=106.2

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      ...+..|.|..+..-+++|. .+.  ++...++.   ..+.....-..  ..-...++.|..  +..+++ +..+. .+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG---~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~iv-G~~g~-ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGG---KTWQPVSLDLDNPFDYHLNSISFDG--NEGWIV-GEPGL-LLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTE--EEEESSTT---SS-EE-----S-----EEEEEEEET--TEEEEE-EETTE-EEE
T ss_pred             CCceEEEEEecCCEEEEEec-CCE--EEEECCCC---ccccccccCCCccceeeEEEEEecC--CceEEE-cCCce-EEE
Confidence            45689999986666666664 443  34443322   11111111000  012355666654  334444 44453 333


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      -...++.-..+...  ...+.....+.... +....++ +..|.  +|........-+ ....-.+.+..+.-+++|+++
T Consensus        86 T~DgG~tW~~v~l~--~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v  159 (302)
T PF14870_consen   86 TTDGGKTWERVPLS--SKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYV  159 (302)
T ss_dssp             ESSTTSS-EE------TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred             ecCCCCCcEEeecC--CCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence            33444433333110  12223334444443 3334433 33443  444443333332 233445678888889999999


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE-cccceEEeeccCCCCCcCC
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEG  344 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~  344 (388)
                      +++.......-||--...-.. ..    ......|..+.|.|++...+++ ..|.|++=+ ....+....-........-
T Consensus       160 avs~~G~~~~s~~~G~~~w~~-~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  160 AVSSRGNFYSSWDPGQTTWQP-HN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             EEETTSSEEEEE-TT-SS-EE-EE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred             EEECcccEEEEecCCCccceE-Ec----cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence            888766666677753221111 11    1123469999999998866655 778888877 2333332221111022334


Q ss_pred             CeeEEEECCCCCeEEEccCCCeEEE
Q 016522          345 RITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      .+.+++|.+++...++|+ .|.+..
T Consensus       234 ~~ld~a~~~~~~~wa~gg-~G~l~~  257 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGG-SGTLLV  257 (302)
T ss_dssp             -EEEEEESSSS-EEEEES-TT-EEE
T ss_pred             eeEEEEecCCCCEEEEeC-CccEEE
Confidence            589999999887777665 455554

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.76  Score=37.60  Aligned_cols=198  Identities=13%  Similarity=0.086  Sum_probs=112.5

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      -+..+.++  +++...+..+.-+++.|+.++..+.    ....+. -.+.-.++..+  | ++...+..|.-..+.|+.+
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~vs--G-n~aYVadlddgfLivdvsd  157 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence            35566665  4567777777889999999866321    111111 11333333333  3 5666666555567788876


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEee
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~  269 (388)
                      .+.......-  .........++.+   +++-..+..|+-+.+.|+..+..+...-.-..+ .+.++..+++-.+++...
T Consensus       158 pssP~lagry--a~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         158 PSSPQLAGRY--ALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             CCCceeeeee--ccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence            5433222110  2223333566665   356667778999999999987655544333333 677888887766665553


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                        .-+.+-|..+.+....+-..... ....++  .+.-.+++......+.-+.+-|..+
T Consensus       233 --egvlivd~s~~ssp~~~gsyet~-~p~~~s--~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         233 --EGVLIVDVSGPSSPTVFGSYETS-NPVSIS--TVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             --cceEEEecCCCCCceEeeccccC-Cccccc--ceecccceeeeeccccCceeEeccC
Confidence              34777787776655444332221 111222  2333466666666666666666654

>PRK13684 Ycf48-like protein; Provisional

Probab=95.82  E-value=1.1  Score=38.65  Aligned_cols=281  Identities=10%  Similarity=0.006  Sum_probs=133.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      ...+.+|+|..+.+-+++|. +|.|..= .+.|+.-....    .....+.++.|.++ ..+++ +..|.  +|...++.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG  118 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG  118 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence            55799999986666666664 4544321 12222222111    12234677888643 34444 34444  33333321


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                         ..+..........+....+..... .. +..++..|.|..=+ ..++.-..+.    ......+..+.+.| ++.++
T Consensus       119 ---~tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~----~~~~g~~~~i~~~~-~g~~v  187 (334)
T PRK13684        119 ---KNWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALV----EDAAGVVRNLRRSP-DGKYV  187 (334)
T ss_pred             ---CCCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCc----CCCcceEEEEEECC-CCeEE
Confidence               111111100001111111222222 22 33344445443322 1222222221    23355788888887 66565


Q ss_pred             EEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      +++. .|.+..- .+...+..... ..-...++++.+.++++.++++ ..|.+++=....+..-....... ......+.
T Consensus       188 ~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~  263 (334)
T PRK13684        188 AVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGYL  263 (334)
T ss_pred             EEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-ccccccee
Confidence            5544 5544432 11221222222 2334578899999998877665 45766432333333322211110 11123478


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .+.+.+++..+++| .+|.+. .....++........ ..-......+.|..+++.++ .+..|.|.-|..
T Consensus       264 ~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~-~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        264 DLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVG-EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             eEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcC-CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence            88999988766655 566554 344445544433110 11224577888877666555 556788877754

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.77  E-value=0.91  Score=37.47  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=127.2

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECC------CC-CeeeEeee-----CCccEEEEEECCCCC------------EE
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNAL------TS-QKTHAIKL-----PCAWVMTCAFSPTGQ------------SV  124 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  124 (388)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+.++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888888888999999986      12 22333332     124577777775433            36


Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCCCceeEEec-ccccc-eEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEE--Eee
Q 016522          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGY-VSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS--VFG  198 (388)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~  198 (388)
                      +.+++||+|.-|...-......  .....+. ...+. -..+++...  ++.+.++--..++|.++|-.-.....  .+.
T Consensus       104 if~tEdGTisaW~p~v~~t~~~--~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT--RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc--ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            7778999999998643221000  0111111 11122 233444432  33444555567888888754322110  010


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEE-------------eeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc---
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVS-------------GSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP---  260 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~-------------~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~---  260 (388)
                      .......-. ...+.-.  +++++++             |.--|.|-+||+.  ...++++.  +.-.....|+..|   
T Consensus       182 DP~iPagyA-PFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       182 DPALPAGYA-PFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CCCCCCCCC-CcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhh
Confidence            000000000 0111111  2233333             3334689999987  35666553  2233456677765   


Q ss_pred             ---CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecC
Q 016522          261 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSI  307 (388)
Q Consensus       261 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~  307 (388)
                         .+.+|+---.||+|..||..+++.+..+....+. -....++.++|..
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence               5677777778999999999988877666543322 1223467777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.74  E-value=0.92  Score=37.25  Aligned_cols=153  Identities=17%  Similarity=0.180  Sum_probs=87.7

Q ss_pred             CeeEEEeCCCCCeEEEEe---CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe-CCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSAS---QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN-LNSPTDK  144 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~-~~~~~~~  144 (388)
                      .+.+.+++++++.+|...   ....+.++.  .+....... ....+..-.|++++...++...+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999777655   233455554  333333322 233678889999988887777677767764 2222110


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEe--eCCCeEEEEecCC---C-ceEEEeecccccCCccCeEEEEeeCCC
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITT---G-LRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~---~-~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                          ........-.+.|..+.++|+|.+..+..  ..++.|.+--+..   + .................+..+.|.+ +
T Consensus       102 ----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~  176 (253)
T PF10647_consen  102 ----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-D  176 (253)
T ss_pred             ----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-C
Confidence                01111111112899999999997655444  3356777665432   2 1111111111123457889999998 6


Q ss_pred             CcEEEEeeCCC
Q 016522          219 SRMFVSGSCDS  229 (388)
Q Consensus       219 ~~~l~~~~~dg  229 (388)
                      ..+++.+...+
T Consensus       177 ~~L~V~~~~~~  187 (253)
T PF10647_consen  177 STLVVLGRSAG  187 (253)
T ss_pred             CEEEEEeCCCC
Confidence            66666555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.73  E-value=0.073  Score=29.29  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCeeEEEeCCCC---CeEEEEeCCCcEEEEECCC
Q 016522           68 GKVYSLDWTSER---NRIVSASQDGRLIVWNALT   98 (388)
Q Consensus        68 ~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~   98 (388)
                      ++|.++.|+|+.   ++|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.55  E-value=0.55  Score=41.45  Aligned_cols=141  Identities=14%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             eeCCCCcEEE-EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC--------CEEEEeeCCCcEEEEECCCCc-
Q 016522          214 ISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------NRFGTGSDDGTCRLFDIRTGH-  283 (388)
Q Consensus       214 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~-  283 (388)
                      .+..+..+++ .|+....++-.|+..+ +.+..+..|...  -+.|.|+.        +.|+ |-.+..|.-.|.+-.. 
T Consensus       474 lh~~dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gN  549 (776)
T COG5167         474 LHDNDSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGN  549 (776)
T ss_pred             eecCCcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCC
Confidence            3333444444 4555667777788777 777777776654  47777742        3344 4445555555655432 


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  363 (388)
                      .+..... ..-......++..- ....|+|+++..|.|++||--.-.....+    .+....|..+..+.+|+++++.+.
T Consensus       550 Ki~v~es-KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         550 KIKVVES-KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTAL----PGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ceeeeee-hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcC----cccccceeeeEeecCCcEEEEeec
Confidence            2211111 00000011222222 23459999999999999995443333334    567788999999999998877664


Q ss_pred             C
Q 016522          364 D  364 (388)
Q Consensus       364 d  364 (388)
                      .
T Consensus       624 ~  624 (776)
T COG5167         624 N  624 (776)
T ss_pred             c
Confidence            3

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.96  Score=35.02  Aligned_cols=178  Identities=14%  Similarity=0.085  Sum_probs=87.2

Q ss_pred             CCCeEEEEeCC--CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEe
Q 016522           78 ERNRIVSASQD--GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRML  154 (388)
Q Consensus        78 ~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (388)
                      +|.++.+.+.-  ..|++||+.+++.+.+.+.....+..=-...-|+++ ...-.+|.-..+|.++-+       ....+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------ELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------hhccc
Confidence            45666666543  479999999999887766542222211111123333 334467888888877633       11111


Q ss_pred             cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522          155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (388)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~  234 (388)
                      . ..+.=..++  .++.+ ++.+....+++.-|.++-..............-..++.+.|-  ++.+.+-.-.+..|...
T Consensus       128 ~-y~GeGWgLt--~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI  201 (262)
T COG3823         128 S-YEGEGWGLT--SDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI  201 (262)
T ss_pred             c-cCCcceeee--cCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence            1 122223333  34444 555555567777777665444333222111222333444444  33344333333334334


Q ss_pred             ECCCC-----------CcceEEEecccCCeeEEEEccCCCE-EEEe
Q 016522          235 DTRVA-----------SRAVRTFHGHEGDVNTVKFFPDGNR-FGTG  268 (388)
Q Consensus       235 d~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~  268 (388)
                      |..++           ......-..|..-.+.|++.|++.. +++|
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44433           1112222234556788999997744 4444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.24  E-value=0.012  Score=54.78  Aligned_cols=149  Identities=16%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC--CceeeEeeeccCCCCCCCeEEEE
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                      .+.+++-+....-+.-...++..+.+-.+.|-. +...+.  -.-|.+.+|++.-  |+....+...........+.-+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            345565554432111122345566677777743 222222  2336788888753  33322222211122222334444


Q ss_pred             ec---CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE-----------ECCCCCeEEEccCCCeEEEe
Q 016522          305 FS---ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG-----------LSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       305 ~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~v~iw  370 (388)
                      |.   ++.-++..+..++.+++.+.++... ..+    .+|...++.++           .+|||..++.++.||.+++|
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~----rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF----RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-HHH----HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            44   4566888888888888877654333 222    45666555543           57999999999999999999


Q ss_pred             ccceeeeecccccc
Q 016522          371 LHYYIFVLMPCHCL  384 (388)
Q Consensus       371 ~~~~~~~~~~~~~l  384 (388)
                      ..+. .....+-|+
T Consensus       263 Qiyi-~g~~~~rcl  275 (1283)
T KOG1916|consen  263 QIYI-TGKIVHRCL  275 (1283)
T ss_pred             eeee-eccccHhhh
Confidence            8774 333444443

>PRK05560 DNA gyrase subunit A; Validated

Probab=95.24  E-value=3.3  Score=40.41  Aligned_cols=269  Identities=8%  Similarity=-0.022  Sum_probs=128.9

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCe-------e--eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---C
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQK-------T--HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---P  141 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~  141 (388)
                      .+-++...++.-+.+|.|+--+..+...       .  ..++. ...+..+........++..+..|.+.......   .
T Consensus       493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~  571 (805)
T PRK05560        493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA  571 (805)
T ss_pred             hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence            4456778889999999998776543211       1  11121 23354555555666677777778766665432   1


Q ss_pred             CCCCCCCce--eEEecccccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEeec-ccccCCccCeEEEEeeCC
Q 016522          142 TDKDGNLPV--SRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGS  217 (388)
Q Consensus       142 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~  217 (388)
                      .....-.+.  ...+.....-+.++.+... ....++..+.+|.++--++..-.....-.. .......+.+..+.... 
T Consensus       572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~-  650 (805)
T PRK05560        572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTD-  650 (805)
T ss_pred             CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeC-
Confidence            100000011  0112222233444444421 235789999999998776543221110000 00011234444444444 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCC--------cceEEEecccCCeeE-EEEccCCCEEEEeeCCCcEEEEECCCCc-----
Q 016522          218 NSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGH-----  283 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  283 (388)
                      ....++..+..|.+..+....-.        .....+.. ...|.+ +.+.+++.+++..+..|.++...+..-.     
T Consensus       651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~  729 (805)
T PRK05560        651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG  729 (805)
T ss_pred             CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC
Confidence            34456666777877777654221        11112221 222333 3344443467788888888877653221     


Q ss_pred             --eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          284 --QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       284 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                        ....+..   ......+..+........++..+.+|.+..++...-.   ..    ......|..+.+..++
T Consensus       730 ~kG~~~lkl---~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~----gR~a~GVk~I~L~~~D  793 (805)
T PRK05560        730 GKGVITIKI---TEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---IT----GRNTQGVRLIRLDEGD  793 (805)
T ss_pred             CCcEEeeec---cCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---cc----ccCCCCeeeEecCCCC
Confidence              1112211   0111123333322333456666778877777754321   11    2233456777765443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.15  E-value=0.15  Score=28.13  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             cCeEEEEeeCCCC--cEEEEeeCCCceEEEECCCC
Q 016522          207 ADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       207 ~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  239 (388)
                      +.+.++.|+|...  .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3578999998565  79999999999999999953

It contains a characteristic DLL sequence motif.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.13  E-value=1.6  Score=36.17  Aligned_cols=233  Identities=13%  Similarity=0.184  Sum_probs=127.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-----cccceEEEEEEeCC-----------CceEE
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHLI  175 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l~  175 (388)
                      ...++++|.+.+-++....+...+||...........++...+..     .....+.+.|+...           ...++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            568899999988888888899999999732211111123333331     22456777776432           12367


Q ss_pred             EeeCCCeEEEEecCCCce---E--EEeecccccCCccCe-EEEEee--CCCCcEEEEeeCCCceEEEECCCCCcce-EEE
Q 016522          176 TSSGDQTCVLWDITTGLR---T--SVFGGEFQSGHTADV-LSVSIS--GSNSRMFVSGSCDSTARLWDTRVASRAV-RTF  246 (388)
Q Consensus       176 ~~~~dg~v~i~d~~~~~~---~--~~~~~~~~~~~~~~i-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~  246 (388)
                      .+++||+|.-|...-+..   .  ..+.    ......+ ..+++.  .....+.++--..++|.+||-.-....+ ..+
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            789999999998643322   1  1111    1112222 234443  3234455555678899999865331110 001


Q ss_pred             ecc-----cC-----------CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC---
Q 016522          247 HGH-----EG-----------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---  307 (388)
Q Consensus       247 ~~~-----~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  307 (388)
                      ...     -.           .|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+.....   ....+.++..|   
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~---LNaPWG~a~APa~F  256 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR---LNAPWGLAIAPESF  256 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc---ccCCceeeeChhhh
Confidence            000     00           01111112222222333445789999976 666666633221   12245666654   


Q ss_pred             ---CCCEEEEEecCCcEEEEEcccceEEeeccCCCCC---cCCCeeEEEECC
Q 016522          308 ---SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS---HEGRITCLGLSA  353 (388)
Q Consensus       308 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~  353 (388)
                         .|.+|+---.||+|..||..+++.+-.+... .+   -...++.|+|..
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEEecCeEEeeeCC
Confidence               4566666667999999999988877776321 11   113467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.98  E-value=3.5  Score=39.42  Aligned_cols=88  Identities=16%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----------Cce--E-EEee---cccccCCccCeEEEEeeCC--CC
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLR--T-SVFG---GEFQSGHTADVLSVSISGS--NS  219 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----------~~~--~-~~~~---~~~~~~~~~~i~~~~~~~~--~~  219 (388)
                      .-.|..+..+|+| .+++..|..| |.|..+..          ++.  . ..+.   ..+.......|..+.|+|.  ++
T Consensus        84 ~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3468889999997 5566666655 44433321          111  1 1110   0112345678899999995  35


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFH  247 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~  247 (388)
                      ..|++-+.|+++++||+.....+.+.+.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            7888888999999999987655555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.95  Score=39.47  Aligned_cols=146  Identities=12%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +.+-|...++.+++.. .|.+.=|....+.   ...+... -....++|.++.|++|+ +.++.--.|+.|.+++....+
T Consensus        26 ngvFfDDaNkqlfavr-Sggatgvvvkgpn---dDVpiSf-dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVR-SGGATGVVVKGPN---DDVPISF-DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeeccCcceEEEEe-cCCeeEEEEeCCC---CCCCcee-eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence            3444544444444433 3445556655433   1222222 23345699999999996 789999999999999885443


Q ss_pred             eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      .......+. ......|...+|.. + .-++.-... .+-+|-.....+.++..+.|...|+--.|.++.+.+..+
T Consensus       100 ~~l~~~~~c-k~k~~~IlGF~W~~-s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  100 SQLEYTQEC-KTKNANILGFCWTS-S-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhHHHHHh-ccCcceeEEEEEec-C-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            332221111 33445688999986 3 344444433 467777665566777778888889888999877754433

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.79  E-value=0.0035  Score=54.01  Aligned_cols=150  Identities=11%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE-EeeCCCcEEEEECCCCc
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~  283 (388)
                      +-.......|.+.+.+ ++.++.+..+..||-..  +..... ..++....++|..++..++ .+-..+.+.+||+.+..
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            3344455677874555 77777788899998542  222222 2344566788888776654 45567899999998653


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  363 (388)
                      ....-..   ..+.  -.-+.|++.+..++.|...|.+.|++..+.+.....    ..|..++++++|.+.+. .+.++.
T Consensus       109 tqqLE~g---g~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dc  178 (615)
T KOG2247|consen  109 TQQLESG---GTSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDC  178 (615)
T ss_pred             HHHHhcc---Ccch--HHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCc
Confidence            3222111   1111  122679999999999999999999998877766665    45999999999998774 555555


Q ss_pred             CCeEE
Q 016522          364 DTNLK  368 (388)
Q Consensus       364 dg~v~  368 (388)
                      |..+.
T Consensus       179 d~~L~  183 (615)
T KOG2247|consen  179 DNTLS  183 (615)
T ss_pred             HHHHH
Confidence            54443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.77  E-value=0.24  Score=39.48  Aligned_cols=69  Identities=29%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             ecCCCCEEEEEecCCcEEEEEcccceEEeecc---CCCC-------CcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +..++.+|++-+.+|.+++||+.+++.+..-.   .+..       .....|..+.++.+|.-|++-+ +|..+.|+...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            44578899999999999999999988765431   1112       3557899999999998777765 57888887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.75  E-value=4.5  Score=39.44  Aligned_cols=170  Identities=12%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             eCCccEEEEEEC---C----CCCEEEEeeCCCcEEEEeCCCC------CCCC--CCCceeEEec---ccccceEEEEEEe
Q 016522          107 LPCAWVMTCAFS---P----TGQSVACGGLDSVCSIFNLNSP------TDKD--GNLPVSRMLS---GHKGYVSCCQYVP  168 (388)
Q Consensus       107 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~vw~~~~~------~~~~--~~~~~~~~~~---~~~~~v~~~~~~~  168 (388)
                      ....+|..|+|.   .    ..++|+ .-....+.|+...-.      ....  -...+...+.   ....+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456778888887   2    123444 445566777772221      1111  1111222222   1234778899999


Q ss_pred             CCCceEEEeeCCCeEEEEecCCCce----EEEee----ccc--ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC
Q 016522          169 DEDTHLITSSGDQTCVLWDITTGLR----TSVFG----GEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (388)
Q Consensus       169 ~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~----~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (388)
                      .....||.....|...|||+.....    .....    ..+  .......-..+.|.+ +.+.|++++ ...+.++|+..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCC
Confidence            8778899999999999999922111    11110    000  011123344778877 545555554 45789999987


Q ss_pred             CCcce-EEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCC
Q 016522          239 ASRAV-RTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       239 ~~~~~-~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  281 (388)
                      ..... .........|..+.-+|.  +..++..+  ..|...++..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            63322 222234567888888875  33333322  5688888776

These proteins are found in fungi.

>PRK10115 protease 2; Provisional

Probab=94.64  E-value=4.4  Score=38.88  Aligned_cols=113  Identities=13%  Similarity=0.015  Sum_probs=64.5

Q ss_pred             cEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----
Q 016522          111 WVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----  180 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----  180 (388)
                      .+..+.|+|+|++|+.+...     ..+++.|+.++..      +...+..-.   ..++|.++++.++++...+     
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~------l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW------YPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC------CCccccCcc---eEEEEeeCCCEEEEEEecCCCCCC
Confidence            46778899999988876432     3688888876431      111111111   4589999986666665432     


Q ss_pred             CeEEEEecCCC--ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---CCceEEEECC
Q 016522          181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTR  237 (388)
Q Consensus       181 g~v~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~i~d~~  237 (388)
                      ..|..+++.++  +....+     ........-..+.+.++.+++..+.   ++.+.+++..
T Consensus       199 ~~v~~h~lgt~~~~d~lv~-----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVY-----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CEEEEEECCCChhHCeEEE-----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            46888898888  334444     2222222212233325555444333   3578888854

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.61  E-value=2.9  Score=37.42  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=62.4

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE--eeeccCCCCCCCeEEEEecCCC------CEEEEEe-----
Q 016522          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGY-----  316 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~-----  316 (388)
                      -.....|+|.|++++|++--..|.|++++..++.....  +..............++++|+-      .+|++..     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34568899999998777765569999998655432211  1111001124468999999874      3455442     


Q ss_pred             -----cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          317 -----SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       317 -----~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                           ....|.-|.+..       .+.+..-......|.  -..|+|.|||.+.++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                 122344454431       112211111112343  3577899999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.58  E-value=2.7  Score=36.21  Aligned_cols=112  Identities=18%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ...+..+.+.|++.+++++. .|.+..- .+.+ +.-.....    .....++.+.+.++++.+++| ..|.+++=....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence            45688899999887665554 4544321 1222 22222211    122358999999999877766 556654323444


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      +................+.++.+.+++..++ ++.+|.+..
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~  284 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV  284 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE
Confidence            4443322110011224578899999877555 445676654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.47  E-value=1.2  Score=31.79  Aligned_cols=115  Identities=9%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCC--------CeeeEeeeCCccEEEEEECC-----CCCEEEEeeCCCcEEEEeC
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~  138 (388)
                      .-.|......|+.++.-|+|.|++....        ..+..+... ..|++++--+     +...|+.|+ ...+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            4456666678999999999999987533        233444433 4477775433     345666665 457899999


Q ss_pred             CCCCCCCCCCceeEEecccccceEEEEEEeCC--CceEEEeeCCCeEEEEecCCCceEEE
Q 016522          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      ..+..        ..++.-.+.|.++.+-.-+  +.-++..+.+..|.-||.+..+...+
T Consensus        81 ~~N~d--------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   81 ENNSD--------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             ccCch--------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            87542        1222334566666664322  13355556667888888766555544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.46  E-value=2.8  Score=35.93  Aligned_cols=106  Identities=9%  Similarity=0.126  Sum_probs=52.3

Q ss_pred             CceEEEeeCC-----CeEEEEecCCCceE---EEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECC
Q 016522          171 DTHLITSSGD-----QTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTR  237 (388)
Q Consensus       171 ~~~l~~~~~d-----g~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  237 (388)
                      +.+++.|+.+     ..+..+|+.+....   .... ..  .....-.+++..  ++.+++.|+..     ..+..||+.
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l--p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~  147 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL--PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLE  147 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC--CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCC
Confidence            3566777654     35677787766531   1211 11  111111233333  56677777642     357788877


Q ss_pred             CCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCCC----cEEEEECCCCc
Q 016522          238 VASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH  283 (388)
Q Consensus       238 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  283 (388)
                      +..  ...+..-  .......+...++++.+.|+.++    .+.+||..+.+
T Consensus       148 ~~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       148 TQE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            541  1222110  11111222233667777777654    35678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.43  E-value=3  Score=36.15  Aligned_cols=43  Identities=5%  Similarity=-0.048  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      ..+.+||..+.+-...-.  + ......-.+++..  ++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~--~-p~~~r~~~~~~~~--~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGE--N-PFLGTAGSAIVHK--GNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECcc--C-CCCcCCCceEEEE--CCEEEEEeeee
Confidence            468889988765443221  1 1001112233333  56777777653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.39  E-value=1.4  Score=41.34  Aligned_cols=115  Identities=8%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             CeeEEEeCC--CCCeEEEEeCCCcEEEEECCC-------C-------------CeeeEeeeCCccEEEEEEC--CCCCEE
Q 016522           69 KVYSLDWTS--ERNRIVSASQDGRLIVWNALT-------S-------------QKTHAIKLPCAWVMTCAFS--PTGQSV  124 (388)
Q Consensus        69 ~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l  124 (388)
                      .|+-|....  +...|+.+..||.|.+|..++       .             ++...+.. ...+.+++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEE
Confidence            355554443  446889999999999996521       0             01122222 2458889998  788899


Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC--Cc---eEEEeeCCCeEEEEec
Q 016522          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DT---HLITSSGDQTCVLWDI  188 (388)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~i~d~  188 (388)
                      |+++....|.||-+........   ... ...+...|.+++|.++.  +.   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~---~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFY---HVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccc---ccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999889999988765321111   111 22366789999998864  22   6788899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.37  E-value=1.2  Score=38.80  Aligned_cols=162  Identities=13%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-cC----Cee-EEEEccCCCEEEEeeCCCcEEEE
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EG----DVN-TVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                      .....+..+-..| +++.+..-+. ..+.++++.+..-..+.+-.. .+    .|+ .+..-..|..+.+++.||-|.-|
T Consensus       218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            3445677777888 6776665543 678888887543222222111 11    122 12222356678888899988776


Q ss_pred             -ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          278 -DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       278 -d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                       |.+.+............-....+..+.-..+.+-+++-+.+|++.++.....+.+..     ..--..+.-+++||.+.
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-----~~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-----ERAYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-----hhhhcCcceeeeCcccc
Confidence             554432211110000000111233333223344677777888888887544443322     12223567789999999


Q ss_pred             eEEEccCCCeEEEeccc
Q 016522          357 ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~  373 (388)
                      +|++-. .|.++++...
T Consensus       371 ~Ll~e~-~gki~~~~l~  386 (733)
T COG4590         371 YLLSED-QGKIRLAQLE  386 (733)
T ss_pred             hheeec-CCceEEEEec
Confidence            988764 5677776543

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.30  E-value=4.3  Score=37.39  Aligned_cols=255  Identities=13%  Similarity=0.148  Sum_probs=113.0

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCCce-eEEecccccceEEEEEEe---CC-CceEEE--eeCCC-
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPV-SRMLSGHKGYVSCCQYVP---DE-DTHLIT--SSGDQ-  181 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~-~~~~~~~~~~v~~~~~~~---~~-~~~l~~--~~~dg-  181 (388)
                      .-..++.+|.|+.++.+..+|.+.++.++.. ......... ...+ .....|.+++|..   .. ...++.  ....+ 
T Consensus        45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~  123 (504)
T PF10433_consen   45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR  123 (504)
T ss_dssp             T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred             CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence            3567899999999999999999999999871 111111111 1111 2267788888885   11 122222  22222 


Q ss_pred             -eEEEEe--cCCCceEEEeecc----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC-CCC--CcceEEEec---
Q 016522          182 -TCVLWD--ITTGLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT-RVA--SRAVRTFHG---  248 (388)
Q Consensus       182 -~v~i~d--~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~--~~~~~~~~~---  248 (388)
                       .+..++  ...+.........    .......+ .-+.-.|.....+++++.  .+.+|.. ...  .........   
T Consensus       124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~~ggllV~~~--~~i~y~~~~~~~~~~~~~~~~~~~~  200 (504)
T PF10433_consen  124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNPPGGLLVGGE--NIIIYKNHLIGSGDYSFLSIPSPPS  200 (504)
T ss_dssp             EEEEEEE--------EETTTTEEEE--EEEE-TT-EEEEEE-TTT-SEEEEES--SEEEEEE------TTEEEEE--H-H
T ss_pred             ceeEEEeeecccccceeeeeccccccccccCCCc-cEEEEcCCCCcEEEEECC--EEEEEecccccccccccccccCCcc
Confidence             233333  3322111000000    00011112 222223322333334432  2334432 111  111122221   


Q ss_pred             -ccCCeeEEE-------EccCCCEEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecC
Q 016522          249 -HEGDVNTVK-------FFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSN  318 (388)
Q Consensus       249 -~~~~i~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  318 (388)
                       ...-+.+..       ...++..++.+..+|.+....+..... +.......  . ....+++++-.+| .+|++|+.-
T Consensus       201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~--~-~~~~s~l~~l~~g~d~lf~gs~~  277 (504)
T PF10433_consen  201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGT--L-CSIASSLTYLKNGGDYLFVGSEF  277 (504)
T ss_dssp             HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE-----S-ESEEEEESTT--EEEEEESS
T ss_pred             CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCC--c-CChhheEEEEcCCCEEEEEEEec
Confidence             122233333       244677899999999999888765442 11111111  0 1235666666554 477777764


Q ss_pred             C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC----CC------eEEEcc---CCCeEEEeccceeee
Q 016522          319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD----GS------ALCTGS---WDTNLKVSLHYYIFV  377 (388)
Q Consensus       319 g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~s~~---~dg~v~iw~~~~~~~  377 (388)
                      |  .+.-|....-+.+..+     ..-+||.++++.+.    ..      .|++++   .+|.+++...-....
T Consensus       278 gds~l~~~~~~~l~~~~~~-----~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~  346 (504)
T PF10433_consen  278 GDSQLLQISLSNLEVLDSL-----PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE  346 (504)
T ss_dssp             S-EEEEEEESESEEEEEEE---------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE
T ss_pred             CCcEEEEEeCCCcEEEEec-----cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce
Confidence            4  5666665555566555     34578999888531    11      444443   588999987655443

...

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=94.08  E-value=6.3  Score=38.48  Aligned_cols=272  Identities=11%  Similarity=0.038  Sum_probs=131.6

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-------e--eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-------T--HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      +..-++-++...+++-+.+|.|+--+..+...       .  ..++. ...+..+........++..+..|.+.......
T Consensus       487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~  565 (800)
T TIGR01063       487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ  565 (800)
T ss_pred             cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence            33344566777888999999998776543211       1  11122 23455555555666677777778766665432


Q ss_pred             CCC---CCCCCce--eEEecccccceEEEEEEe-CCCceEEEeeCCCeEEEEecCCCceEEEeecc-cccCCccCeEEEE
Q 016522          141 PTD---KDGNLPV--SRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVS  213 (388)
Q Consensus       141 ~~~---~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~  213 (388)
                      -..   ...-.+.  ...+.....-+.++.... +....++..+.+|.++-.++..-......... +.....+.+..+.
T Consensus       566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~  645 (800)
T TIGR01063       566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR  645 (800)
T ss_pred             CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence            111   0000011  011222223344444322 12357889999999998876543221111000 0011234454444


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCC------cceE--EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC---
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVAS------RAVR--TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG---  282 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  282 (388)
                      ... ....++..+..|.+..+....-.      .-..  .+. ....|.++...+++..++..+..|.++...+..-   
T Consensus       646 ~~~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~  723 (800)
T TIGR01063       646 LTS-GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET  723 (800)
T ss_pred             EeC-CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence            444 33456666677877766553221      0111  111 1223444444344556788888888887765421   


Q ss_pred             ----ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          283 ----HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       283 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                          +....+....   ....+..+....+...++..+.+|.+..++...-..   .    ..-...|..+....+
T Consensus       724 ~R~~kGv~~ikl~~---~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~---~----gR~a~GVk~i~L~~~  789 (800)
T TIGR01063       724 SRGGKGVKSIKITD---RNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE---Q----GRNTQGVRLIRLDED  789 (800)
T ss_pred             CCCCcceEEEEccC---CCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc---c----ccCCCCeeeeeeCCC
Confidence                1122221111   111233333333444566667788777777543211   1    122334666766443

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.96  E-value=4.1  Score=35.86  Aligned_cols=41  Identities=10%  Similarity=0.020  Sum_probs=20.8

Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                      .+.+||..+......-.  . ......-.++...  ++++++.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~--~-p~~~~~~~a~v~~--~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGE--S-PFLGTAGSAVVIK--GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCc--C-CCCCCCcceEEEE--CCEEEEEeee
Confidence            58889988876543221  1 1111112233333  5567777764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.87  E-value=1.5  Score=34.28  Aligned_cols=112  Identities=13%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             EEccCC-CEEEEeeCCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE------EecCCcEEEE----
Q 016522          257 KFFPDG-NRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA------GYSNGDCYVW----  324 (388)
Q Consensus       257 ~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~------~~~dg~i~i~----  324 (388)
                      ++...| +.|+.+...+.|.+|++. ...........-+.     |..+.++..|+||++      ++....+++|    
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~-----V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR-----VLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh-----eeEEEeccccceEEEEEeecCCccceEEEEEEEhh


Q ss_pred             -------------------EcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          325 -------------------DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       325 -------------------d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                                         ..........+....-.-..++.+++..|-..-|+.|+ ++.+.+|...+
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=3.3  Score=41.36  Aligned_cols=232  Identities=10%  Similarity=0.001  Sum_probs=104.6

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      .....++|+|...++|.+..+|.|+++-...-+.....+.... .+..+.+-...........+..+.+|......    
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~----  111 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT----  111 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc----
Confidence            3567889999999999999999999997543332222211111 22222222222233333445556666554311    


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                           .  ..+...+++..-.+  .-..+-+ ..+.+++||..-........... ..+...+ -...++.-........
T Consensus       112 -----~--~~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~s~~~~~~~~~~~  179 (993)
T KOG1983|consen  112 -----G--VFLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGT-ESSNFVP-YESLSPTLSIEGLVID  179 (993)
T ss_pred             -----e--eecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccc-cccccce-eeeeccceeeeccccc
Confidence                 0  11122222222211  1112334 77888888765432221110000 0110000 0000000000000000


Q ss_pred             CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .  .-.++.+..  .. ..+..+..++.+..+..... +..+...+.+.+|+.........+...          ....+
T Consensus       180 ~--~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~  243 (993)
T KOG1983|consen  180 L--DTVLISLPD--AY-LGLSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLPN----------GQLES  243 (993)
T ss_pred             c--ccceeeccc--cc-ccccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhcccc----------cccCc
Confidence            0  011111111  11 23333445555555544433 333334456666665443333333221          11127


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceE
Q 016522          307 ISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      +++..++++..||.+.+||...++.
T Consensus       244 ~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  244 RDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cCCceEEEEEecCCEEeeecCCCce
Confidence            7888999999999999999887655

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.68  E-value=0.45  Score=37.95  Aligned_cols=77  Identities=9%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      +..++.++++.+.+|.+++||+...+.......+...+.       .....|..+....+|. -+++ -.+|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~-lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVT-LSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEE-EeCCCEEEeccc
Confidence            445788999999999999999998664322212222222       3556788888887763 3443 345778888876


Q ss_pred             CCceEE
Q 016522          190 TGLRTS  195 (388)
Q Consensus       190 ~~~~~~  195 (388)
                      -+....
T Consensus        96 L~~W~~  101 (219)
T PF07569_consen   96 LGCWIR  101 (219)
T ss_pred             cceeEE
Confidence            554444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.55  E-value=3.9  Score=34.31  Aligned_cols=168  Identities=13%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             eEEEEecCCCceEEEeecccccC-CccCeEEEEeeCCCC----cE-EEEeeCCCceEEEECCCCCcceEEEecc------
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSG-HTADVLSVSISGSNS----RM-FVSGSCDSTARLWDTRVASRAVRTFHGH------  249 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~------  249 (388)
                      +|.+||+.+++.+..+....... ..+.+..+.+...++    .+ .++-...+.|.++|+.++ +..+.+..+      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-KSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-EEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-cEEEEecCCcceecc
Confidence            57789999998877775432222 356778888876332    23 334444568999999876 333333221      


Q ss_pred             -------------cCCeeEEEEcc---CCCEEEEeeCCCcEEEEECCC-----Cce---------eeEeeeccCCCCCCC
Q 016522          250 -------------EGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRT-----GHQ---------LQVYYQQHGENEIPH  299 (388)
Q Consensus       250 -------------~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----~~~---------~~~~~~~~~~~~~~~  299 (388)
                                   ...+..++.+|   +++.|+-....+ -++|.+.+     ...         +..+..     ..+.
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-----k~~~  187 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD-----KGSQ  187 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE--------S
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc-----cCCC
Confidence                         12355666655   555665554332 12333221     110         011100     0123


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEccc-----c-eEEeeccCCCCCc-CCCeeEEEECC--CCCeEEEc
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLL-----A-KVVLNLGSLQNSH-EGRITCLGLSA--DGSALCTG  361 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~-~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~s~  361 (388)
                      ...++++++|.++++--..+.|..|+...     . +.+..     ... -..+.++.+.+  +|.+.+..
T Consensus       188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-----d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-----DPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE-----cCceeeccceeeeccccCceEEEEE
Confidence            56788999998888888899999999875     1 22222     122 35678899988  77655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.45  E-value=2.7  Score=37.53  Aligned_cols=82  Identities=12%  Similarity=0.019  Sum_probs=52.9

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEEC---------CCCceeeEeeecc------CCCCCCCeEEEEecCCC---CEEE
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDI---------RTGHQLQVYYQQH------GENEIPHVTSIAFSISG---RLLF  313 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~---~~l~  313 (388)
                      .|..+..++.|..++..+.+|.+.++=.         .+++.........      ..+..-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3667888999999999999997665431         2332221111100      01111236778899986   5888


Q ss_pred             EEecCCcEEEEEcccceEEe
Q 016522          314 AGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~~  333 (388)
                      .-++|..+++||+.....+.
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            88899999999987665553

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.40  E-value=4.8  Score=34.91  Aligned_cols=14  Identities=21%  Similarity=0.240  Sum_probs=9.8

Q ss_pred             CCCCCeEEEccCCC
Q 016522          352 SADGSALCTGSWDT  365 (388)
Q Consensus       352 ~~~~~~l~s~~~dg  365 (388)
                      .-++++++.||.+.
T Consensus       319 ~~~~~iyv~GG~~~  332 (346)
T TIGR03547       319 SWNNGVLLIGGENS  332 (346)
T ss_pred             EcCCEEEEEeccCC
Confidence            34678888888653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.29  E-value=0.29  Score=42.41  Aligned_cols=173  Identities=13%  Similarity=0.083  Sum_probs=96.5

Q ss_pred             eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-cccceE-EEEEEeCCCceEEEeeCCCe
Q 016522          105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVS-CCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~l~~~~~dg~  182 (388)
                      +......+..+-..|||+.+.+-+. ..+.++++.+..-...+  ......+ ....|+ .+... .|+.-++.++.||-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk--l~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~  291 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK--LVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL  291 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh--hhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence            4444566788889999998887655 67889998764321110  0000011 001122 11111 23455788889998


Q ss_pred             EEEE-ecCCCceEEEeecc-cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          183 CVLW-DITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       183 v~i~-d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      |.-| |.+.+.. ..+... ...-...++..+.-.. +.+-+++-+..|++..+..... +.+..-. --..+.-+++||
T Consensus       292 vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-~~lL~~~-~~~~~~~~~~Sp  367 (733)
T COG4590         292 VSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-KLLLFER-AYQAPQLVAMSP  367 (733)
T ss_pred             eeeeeeeecCCC-CcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-cceehhh-hhcCcceeeeCc
Confidence            8877 4443321 111000 0011223333333332 5566778888899988876544 2222222 223567799999


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceee
Q 016522          261 DGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (388)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (388)
                      ++.++++-. .|.++++.+++..+..
T Consensus       368 ~~~~Ll~e~-~gki~~~~l~Nr~Pei  392 (733)
T COG4590         368 NQAYLLSED-QGKIRLAQLENRNPEI  392 (733)
T ss_pred             ccchheeec-CCceEEEEecCCCCCc
Confidence            999988764 4679999887755443

>PLN02153 epithiospecifier protein

Probab=93.28  E-value=5  Score=34.74  Aligned_cols=152  Identities=12%  Similarity=0.086  Sum_probs=70.9

Q ss_pred             CceEEEeeCC-----CeEEEEecCCCceEEEeeccc-ccCCccCeEEEEeeCCCCcEEEEeeCC-----------CceEE
Q 016522          171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCD-----------STARL  233 (388)
Q Consensus       171 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~i  233 (388)
                      +.+++.|+.+     ..+.+||+.+.+....-.... .......-.+++..  ++++++.|+.+           ..+.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence            4667777753     257789988765433211000 00111112233333  56677777754           24677


Q ss_pred             EECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeCC-------------CcEEEEECCCCceeeEeeeccCC
Q 016522          234 WDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSDD-------------GTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      ||+.+.  .-..+....      .....+.+  ++++++.++.+             ..+.+||+.+.+-.........+
T Consensus       164 yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P  239 (341)
T PLN02153        164 YNIADG--KWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP  239 (341)
T ss_pred             EECCCC--eEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence            887654  111111111      11111222  56666655432             45888888776543322110001


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccce
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAK  330 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~  330 (388)
                      ........+  ..++++++.|+..              ..++.||+.+.+
T Consensus       240 ~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        240 SARSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             CCcceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            111111222  2356677777641              257888876654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.19  E-value=5  Score=34.43  Aligned_cols=110  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             CCCeEEEEeCCC-----cEEEEECCCCCee---eEeee-CCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCC
Q 016522           78 ERNRIVSASQDG-----RLIVWNALTSQKT---HAIKL-PCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTD  143 (388)
Q Consensus        78 ~~~~l~t~~~dg-----~v~iwd~~~~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~  143 (388)
                      ++..++.|+.++     .+..+|+.+.+..   ..+.. +...-...+..-+++..+.|+..     ..+..||+.+.. 
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~-  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE-  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence            455666776542     5666777665431   11111 11111111112256677777642     357778877643 


Q ss_pred             CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceE
Q 016522          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRT  194 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~  194 (388)
                          +.....+... ......+...+ +.+.+.|+.++    .+.+||+.+.+..
T Consensus       151 ----W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       151 ----WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             ----eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence                1111111111 11111222223 46777777654    3568898876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13979 DNA topoisomerase IV subunit A; Provisional

Probab=92.66  E-value=12  Score=37.34  Aligned_cols=164  Identities=5%  Similarity=-0.045  Sum_probs=85.0

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCee----eEee-eCCccEEEEEECCCCCEEEEeeCCCc---EEEEeCCCCCCCC
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKT----HAIK-LPCAWVMTCAFSPTGQSVACGGLDSV---CSIFNLNSPTDKD  145 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~  145 (388)
                      .+-++.+.+++-+.+|.|+--+..+.+..    ..+. .....+..+.-......++.-+..|.   +.+|++.......
T Consensus       511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~  590 (957)
T PRK13979        511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKE  590 (957)
T ss_pred             HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCC
Confidence            45677888999999999987765432111    1110 12234555555555556666666675   4556666543211


Q ss_pred             CCCceeEEe---cccccceEEE-EEEe-CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC--
Q 016522          146 GNLPVSRML---SGHKGYVSCC-QYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--  218 (388)
Q Consensus       146 ~~~~~~~~~---~~~~~~v~~~-~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  218 (388)
                      .-.+....+   ......|..+ .+.. +.+.+++.++..|.|+...+..-.....-...+.......+..+.....+  
T Consensus       591 ~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~v~~~~~~~~  670 (957)
T PRK13979        591 KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIKVKLVDRTRE  670 (957)
T ss_pred             CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEEEEEcCCCCC
Confidence            111111111   1112334333 3321 12356888999999998876532211100000012334555555555422  


Q ss_pred             CcEEEEeeCCCceEEEECC
Q 016522          219 SRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~  237 (388)
                      ...++..+..|....|+..
T Consensus       671 ~~~Iil~Tk~G~airF~~~  689 (957)
T PRK13979        671 EKFIKIKTKKGLSFTVEEP  689 (957)
T ss_pred             CCEEEEEeCCCcEEEEEHH
Confidence            2467778888888888764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.56  E-value=4.8  Score=32.63  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCcceEEE-----ecccCCee
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASRAVRTF-----HGHEGDVN  254 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~-----~~~~~~i~  254 (388)
                      -.+||+.+++.....     .....-+.+-.+.+ ++.++.+|+..   ..+++++...........     -.....-.
T Consensus        48 s~~yD~~tn~~rpl~-----v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLT-----VQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             EEEEecCCCcEEecc-----CCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence            457888887654332     22222333334556 78899888752   357788765410010000     11223344


Q ss_pred             EEEEccCCCEEEEeeCCCc-EEEEECCCC-ceeeEe--eec-cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          255 TVKFFPDGNRFGTGSDDGT-CRLFDIRTG-HQLQVY--YQQ-HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      +...-|||+.|+.|+.+.- ..+|.-... .....+  ... ........--.+...|+|++++.+..+  -.|||..+.
T Consensus       122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n  199 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN  199 (243)
T ss_pred             cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC
Confidence            5556679999999887643 444443211 111111  110 000111122345667999998888654  556788888


Q ss_pred             eEEeeccC
Q 016522          330 KVVLNLGS  337 (388)
Q Consensus       330 ~~~~~~~~  337 (388)
                      +.+..+..
T Consensus       200 ~v~~~lP~  207 (243)
T PF07250_consen  200 TVVRTLPD  207 (243)
T ss_pred             eEEeeCCC
Confidence            77777653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.51  E-value=0.88  Score=24.83  Aligned_cols=40  Identities=10%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             CCCCeEEEEe-CCCcEEEEECCCCCeeeEeeeCCccEEEEEE
Q 016522           77 SERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAF  117 (388)
Q Consensus        77 ~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  117 (388)
                      |++++|+++. .+++|.++|..+++.+..+.... ....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence            5677666554 57899999999888888777643 2344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.42  E-value=11  Score=36.66  Aligned_cols=68  Identities=10%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-----------eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-----------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      ++...|+.+..|+.+|.+.+|.+.........           ..+..+|..+...+.-..+++ -.|+.+.++++....
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~   99 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE   99 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence            34456779999999999999988654221111           112345555555554444443 346778888887644

>PLN02193 nitrile-specifier protein

Probab=92.42  E-value=8.5  Score=35.12  Aligned_cols=153  Identities=10%  Similarity=-0.026  Sum_probs=71.9

Q ss_pred             CCCEEEEeeCC-----CcEEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeCCC-----eEEEEe
Q 016522          120 TGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWD  187 (388)
Q Consensus       120 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d  187 (388)
                      ++.+++.|+.+     ..+..||+.+..-     .......  .....-.+++..  ++.+++.|+.++     .+..||
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W-----~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd  300 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEW-----KLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYN  300 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEE-----EEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEE
Confidence            55666777754     3577888776331     1111110  000111122222  246677777543     467888


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----CceEEEECCCCCcceEEEecc-----cCCeeEEEE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGH-----EGDVNTVKF  258 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~  258 (388)
                      +.+.+....-.... ......-..++..  ++++++.++.+    ..+.+||+.+. . ...+...     .....+++ 
T Consensus       301 ~~t~~W~~~~~~~~-~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~-~-W~~~~~~g~~P~~R~~~~~~-  374 (470)
T PLN02193        301 IVDKKWFHCSTPGD-SFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD-K-WTQVETFGVRPSERSVFASA-  374 (470)
T ss_pred             CCCCEEEeCCCCCC-CCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCC-E-EEEeccCCCCCCCcceeEEE-
Confidence            87765432211000 0011111222222  45666766655    45888998764 1 2222211     11111222 


Q ss_pred             ccCCCEEEEeeCC--------------CcEEEEECCCCcee
Q 016522          259 FPDGNRFGTGSDD--------------GTCRLFDIRTGHQL  285 (388)
Q Consensus       259 ~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~  285 (388)
                      .-++++++.|+.+              ..+.+||+.+.+-.
T Consensus       375 ~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        375 AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            2256777777753              24788888766543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.40  E-value=1.9  Score=42.87  Aligned_cols=145  Identities=15%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             EEeeCCCceEEEECCCCCcceEEEecccCCeeEEE--------EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK--------FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      +-.+.|..+.+|+..+. .....+.+-...|..+.        |-|.=+++...+.--.|.++-+...+...........
T Consensus        93 aWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~  171 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS  171 (1311)
T ss_pred             eEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc


Q ss_pred             ----CCCCCeEEEEecCCCCEEEEEecCCcEEEEEc---------------------ccceEEeeccCCCCCcCCCeeEE
Q 016522          295 ----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT---------------------LLAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       295 ----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------------------~~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                          .....|+++....+|+.+++|-.+   .+|.+                     .....+.++......+.++|..+
T Consensus       172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI  248 (1311)
T ss_pred             eeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee


Q ss_pred             EECCCCCeEEEccCCCeEEEec
Q 016522          350 GLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       350 ~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +.......|.+-+..|+|.+|+
T Consensus       249 ~ID~SR~IlY~lsek~~v~~Y~  270 (1311)
T KOG1900|consen  249 TIDNSRNILYVLSEKGTVSAYD  270 (1311)
T ss_pred             EeccccceeeeeccCceEEEEE

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.37  E-value=7.5  Score=34.38  Aligned_cols=152  Identities=11%  Similarity=0.020  Sum_probs=79.6

Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee--
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--  286 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--  286 (388)
                      ..+...+ ++.+++.+.....++-||--.  .. ...-......+.++.+.+++..++++ .+|.+. +....+..-.  
T Consensus       242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeEEEcC-CCCEEEEECCccEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            3344444 555665555333333344321  11 11122234568899999998877666 556543 3334443111  


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                      .+...........+..+.|.+++..+++| ..|.+.... ..++....... ...-......+.|.++++-+++ +.+|.
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~-~~~~~~~ly~v~f~~~~~g~~~-G~~G~  392 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKG-ADNIAANLYSVKFFDDKKGFVL-GNDGV  392 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccc-cCCCCcceeEEEEcCCCceEEE-eCCcE
Confidence            12111111122348889999887766666 677666553 44444333210 0223456889999877665554 56787


Q ss_pred             EEEe
Q 016522          367 LKVS  370 (388)
Q Consensus       367 v~iw  370 (388)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            7654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.27  E-value=2.3  Score=37.96  Aligned_cols=26  Identities=12%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEE
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVW   94 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iw   94 (388)
                      .|..+..++.|..++-+|.+|.+..+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            46777888889988888888876654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.16  E-value=1.7  Score=33.24  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             cEEEEEECCCC------CEEEEeeCCCcEEEEeCCC
Q 016522          111 WVMTCAFSPTG------QSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus       111 ~v~~~~~~~~~------~~l~~~~~dg~i~vw~~~~  140 (388)
                      .+..++|||.|      -+|++-..+|.+.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999954      4688888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=92.01  E-value=15  Score=37.15  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=17.7

Q ss_pred             CcCCCeeEEEECCCCCeEEEccCC
Q 016522          341 SHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      +|-..+.++|.+|||...++-..+
T Consensus       659 A~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  659 AKLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             cccCCcceEEECCCCcEEEecCCc
Confidence            455678899999999877664433

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.91  E-value=11  Score=35.37  Aligned_cols=166  Identities=9%  Similarity=-0.001  Sum_probs=0.0

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEEC---------CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEE
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA---------LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIF  136 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw  136 (388)
                      .+.|-++.|.++++.+++.-.+|.|.+||.         .....-..-.....-|..........++++.+. ++.=..|
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      .+-.-...............+........|+...+.+..-  .++.|.+|++..-+....+.....-.... -..+.+.|
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~~vSl~~  285 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DDLVSLKP  285 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-ccceEeec


Q ss_pred             CCCcEEEEeeCCCceEEEEC
Q 016522          217 SNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~  236 (388)
                      ...+.++.+. +..|++.|+
T Consensus       286 ~s~nRvLLs~-~nkIyLld~  304 (670)
T PF10395_consen  286 PSPNRVLLSV-NNKIYLLDL  304 (670)
T ss_pred             CCCCeEEEEc-CCEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.86  E-value=4.6  Score=37.90  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      ...-++++.-+|.|.-++.++.||+|++|+......  +.....   +-..+.|...|  |++...|..+.-|.-+.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~---p~~nlv~tnhg--l~~~tsdrr~la~~~dg   84 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK---PKENLVFTNHG--LVTATSDRRALAWKEDG   84 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC---Cccceeeeccc--eEEEeccchhheeeccC
Confidence            344678888899999999999999999999865443  222222   22334454444  55566677666676443

>PRK00736 hypothetical protein; Provisional

Probab=91.61  E-value=0.79  Score=28.53  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=26.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD   37 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (388)
                      .|++|++.....+.++..+.++++....++.+..
T Consensus        20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736         20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788888888888888888888888877665543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.42  E-value=9.3  Score=33.54  Aligned_cols=196  Identities=14%  Similarity=0.091  Sum_probs=101.1

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      .+..+..+|.|.-.|..++..+.......  ..+..-.+..+|+ ++.++.+|.+..+|..++.       .........
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~-------~~W~~~~~~  141 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT-------LVWSRNVGG  141 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc-------EEEEEecCC
Confidence            45556788888888988888664433321  2222222223565 7778888888888876544       222222222


Q ss_pred             -cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC--CCceEEEE
Q 016522          159 -GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWD  235 (388)
Q Consensus       159 -~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~i~d  235 (388)
                       ..+..-....+  ..+..++.+|.+...|..++...........  ....+..-.. . ....+..+..  ++.+.-+|
T Consensus       142 ~~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~  215 (370)
T COG1520         142 SPYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAP--LSLSIYGSPA-I-ASGTVYVGSDGYDGILYALN  215 (370)
T ss_pred             CeEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCc--cccccccCce-e-ecceEEEecCCCcceEEEEE
Confidence             11111122222  3355555789999999998888777532110  0111111101 1 2233444444  55666666


Q ss_pred             CCCCCcceEEEe-cccCC---e--e-EEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          236 TRVASRAVRTFH-GHEGD---V--N-TVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       236 ~~~~~~~~~~~~-~~~~~---i--~-~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      ...+ ...-... .+...   +  . .+..-+  .+.-++.++.++.+...|..+++.+..+...
T Consensus       216 ~~~G-~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         216 AEDG-TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             ccCC-cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            6655 2222211 01111   1  0 110000  1223466677888999999999988887653

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=91.21  E-value=0.7  Score=27.57  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=26.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQ   32 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   32 (388)
                      |+++|+++++.++.|+..++..+...+..
T Consensus        22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~   50 (59)
T PF06698_consen   22 SVEELEERIALLEAEIARLEAAIAKKSAS   50 (59)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999998887654

The function of this family is unknown.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.11  E-value=1.5  Score=40.89  Aligned_cols=72  Identities=15%  Similarity=0.067  Sum_probs=44.3

Q ss_pred             CCcEEEEeeCCCceEEEECCC---CCcceEEE--ec--------------------ccCCeeEEEEcc----CCCEEEEe
Q 016522          218 NSRMFVSGSCDSTARLWDTRV---ASRAVRTF--HG--------------------HEGDVNTVKFFP----DGNRFGTG  268 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~~--------------------~~~~i~~~~~~~----~~~~l~~~  268 (388)
                      +...++.+..||.+.......   ........  ..                    ..+....+++++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            556677778888888887664   11111110  00                    123345566665    77899999


Q ss_pred             eCCCcEEEEECCCCceeeEee
Q 016522          269 SDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.|+++|+||+.+++++....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999966553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK00295 hypothetical protein; Provisional

Probab=90.57  E-value=1  Score=27.99  Aligned_cols=34  Identities=6%  Similarity=0.125  Sum_probs=26.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD   37 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (388)
                      .|++|++...+.+.++..++++++....++.+..
T Consensus        20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295         20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4778888888888888888888888877665543

>PLN02153 epithiospecifier protein

Probab=90.55  E-value=11  Score=32.71  Aligned_cols=62  Identities=18%  Similarity=0.024  Sum_probs=31.5

Q ss_pred             CCCeEEEEeCC-------CcEEEEECCCCCeeeEeee---CCc---cEEEEEECCCCCEEEEeeCC-----CcEEEEeCC
Q 016522           78 ERNRIVSASQD-------GRLIVWNALTSQKTHAIKL---PCA---WVMTCAFSPTGQSVACGGLD-----SVCSIFNLN  139 (388)
Q Consensus        78 ~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~  139 (388)
                      ++..++.|+.+       ..+.+||..+.+-......   +..   ....+.+  ++++++.|+.+     ..+.+||..
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34566666653       2577888776543221111   110   1112222  46677777753     257778877


Q ss_pred             CC
Q 016522          140 SP  141 (388)
Q Consensus       140 ~~  141 (388)
                      +.
T Consensus       110 t~  111 (341)
T PLN02153        110 KN  111 (341)
T ss_pred             CC
Confidence            53

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.49  E-value=14  Score=33.83  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEE
Q 016522           87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQ  165 (388)
Q Consensus        87 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~  165 (388)
                      ..+...+.| ..|.....+.........+...++|.+++...  ..+..+|+....      .....+... ...-..+.
T Consensus       126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v------~~~~~l~~~~~~~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV------IWEYDLPGGYYDFHHDID  196 (477)
T ss_dssp             BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E------EEEEE--TTEE-B-S-EE
T ss_pred             CCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE------EEeeecCCcccccccccE
Confidence            344556666 34555444443332222256678888887655  677777776421      111222221 01124466


Q ss_pred             EEeCCCceEEEeeC-------------CCeEEEEecCCCceEEEeeccccc----------------------CCccCeE
Q 016522          166 YVPDEDTHLITSSG-------------DQTCVLWDITTGLRTSVFGGEFQS----------------------GHTADVL  210 (388)
Q Consensus       166 ~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~~~~~~~~~~~~----------------------~~~~~i~  210 (388)
                      ..|+| ++|+.+..             .-.|..+| .+|+.+..+......                      ..--.++
T Consensus       197 ~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N  274 (477)
T PF05935_consen  197 ELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN  274 (477)
T ss_dssp             E-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred             ECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence            77776 55555551             12356666 677766665322100                      0013478


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      ++.+.+.++.+++++-.-..|...|.+++
T Consensus       275 si~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             ccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            99999877777777766668888886655

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.31  E-value=20  Score=35.41  Aligned_cols=178  Identities=15%  Similarity=0.092  Sum_probs=95.0

Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeC-----------CCceEEEECCCCCcceEEEeccc
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSC-----------DSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                      |++.|..+++.+..+.... ....-.+....|+..+.. ++++|..           +|.++.|++-.....+..+....
T Consensus       855 I~~~d~~s~~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             EEEEcCCCCceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            7777777776666653322 122334555566653433 3444332           34567776654434333332222


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE--Eccc
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLL  328 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~  328 (388)
                      -+-.-.+..|-..++++| ....+++||+...+.+.......   ....|+.+.+  .+..+++|...-++.++  +-..
T Consensus       934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~---~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF---IPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc---CceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence            222224556655555555 34589999998776665543322   1224666665  45678888776666554  4444


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .+.+.-..   ..-.-.|+++.+- |...++.|..=|.+.+-.
T Consensus      1008 n~l~~fad---D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1008 NQLIVFAD---DPVPRHVTALELL-DYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred             CeEEEEeC---CCccceeeEEEEe-cCCceeeccccCcEEEEE
Confidence            44443332   2223346666665 344577776666665543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.27  E-value=3.1  Score=31.87  Aligned_cols=32  Identities=13%  Similarity=0.039  Sum_probs=26.7

Q ss_pred             CCCeeEEEECCCC------CeEEEccCCCeEEEeccce
Q 016522          343 EGRITCLGLSADG------SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       343 ~~~v~~~~~~~~~------~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...|.+++|||.|      .+|++...+|.|.||....
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3479999999954      4899999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=90.13  E-value=22  Score=35.69  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=81.9

Q ss_pred             CcEEEEeeC---------CCceEEEECCC----CCcce-----EE--EecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          219 SRMFVSGSC---------DSTARLWDTRV----ASRAV-----RT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       219 ~~~l~~~~~---------dg~i~i~d~~~----~~~~~-----~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      ..++++|..         -|.+++||+-.    +.++.     +.  .+...++|..++=- +|.++.+-  .-+|.+|+
T Consensus      1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~--GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQ--GQKIIVRK 1122 (1366)
T ss_pred             cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEcc--CcEEEEEE
Confidence            457777653         47899999643    21221     11  12345667666532 56544433  34799999


Q ss_pred             C-CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-
Q 016522          279 I-RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-  356 (388)
Q Consensus       279 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  356 (388)
                      + +....+..-.. ..     ++.-.....-+++|+.|.--..|.+.-.........+-.. ....-.+.++.|--||. 
T Consensus      1123 l~r~~~ligVaFi-D~-----~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr-d~~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI-DL-----PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR-DFEPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred             eccCCcceeeEEe-cc-----ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec-CCchhhceeeeeEEcCCe
Confidence            9 44443332221 11     1333333334568888877777777665433222222110 12223577777876665 


Q ss_pred             -eEEEccCCCeEEEecccee
Q 016522          357 -ALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       357 -~l~s~~~dg~v~iw~~~~~  375 (388)
                       .++++..|++|+++.+.++
T Consensus      1196 L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred             eEEEEEcCCCcEEEEEeCCC
Confidence             6788889999999987653

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.08  E-value=17  Score=34.66  Aligned_cols=93  Identities=13%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             eEEEEccCCCEEEEeeCCCc-----EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          254 NTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       254 ~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ..++|-|.|..+++-+.||.     |.++.-+ |-.-..+...  .........++|+-....++++ ..+.+.+|-..+
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr--~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN  325 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLR--VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN  325 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCcccc--CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence            45899999999999876653     5555422 2111111110  0111125566776665555555 455899998765


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      -.-....    ...-..+.-+.|+|.
T Consensus       326 yhWYLK~----e~~ip~~s~vkwhpe  347 (1243)
T COG5290         326 YHWYLKV----ERQIPGISYVKWHPE  347 (1243)
T ss_pred             eEEEEEE----eecCCCcceeeeccc
Confidence            4433322    122234566778874

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.07  E-value=10  Score=31.66  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee------CCCcEEEEeCCCCCCCCCCCceeEEecc-----c
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG------LDSVCSIFNLNSPTDKDGNLPVSRMLSG-----H  157 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~  157 (388)
                      ..|++||..+.+-...-..-.+.|+++.|..+.++++.|.      ....+..||+.+..       . ..+..     -
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w-~~~~~~~s~~i   87 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------W-SSLGGGSSNSI   87 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------e-eecCCcccccC
Confidence            4699999877655444444567799999997777777764      35578889988743       1 11222     2


Q ss_pred             ccceEEEEEEeC-CCceEEEee-CCC--eEEEEec
Q 016522          158 KGYVSCCQYVPD-EDTHLITSS-GDQ--TCVLWDI  188 (388)
Q Consensus       158 ~~~v~~~~~~~~-~~~~l~~~~-~dg--~v~i~d~  188 (388)
                      .++|..+.+... +.++.+.|. .+|  .|..||-
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence            467777777543 334444443 233  4556653

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.01  E-value=20  Score=34.99  Aligned_cols=71  Identities=15%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec----cC-----------CCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----GS-----------LQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~-----------~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ..|.++....-+.+++....||+|.++|..+.+.+...    ..           +...+..++..++|||++..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            34777877777889999999999999998776554433    10           0011122455689999999999999


Q ss_pred             CCCeEE
Q 016522          363 WDTNLK  368 (388)
Q Consensus       363 ~dg~v~  368 (388)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999977

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial

Probab=89.99  E-value=19  Score=34.72  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=80.6

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      +..-++-++...++..+.+|.|+--....... ...++.. ..+..+........++..+.+|.+.-+....-.......
T Consensus       485 ~~~~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikLKeg-D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~aG  563 (735)
T TIGR01062       485 VSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAG-DSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQG  563 (735)
T ss_pred             cchhhcccCcceEEEEecCCEEEeccccccchhccCcCCC-CeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccCC
Confidence            44445667788999999999888665443221 1222223 335555555556667777778877666554311111111


Q ss_pred             c-eeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-------CceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          149 P-VSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       149 ~-~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      . ....+ -.....|.++....+ +..++..+..|.++...+..       ++....+     .. ...+..+.....+.
T Consensus       564 gpV~~~L~L~~gE~Iv~~~~v~~-~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~L-----k~-~d~lv~v~~v~~~d  636 (735)
T TIGR01062       564 EPLTGKLLLPIGATITNILMYSP-NQLLLMASDAGYGFLCNFNDLIARNKAGKALINL-----PE-NASVIAPLPVNGDS  636 (735)
T ss_pred             ceeEeeecCCCCCEEEEEEEecC-CcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEe-----CC-CCEEEEEEEEcCCC
Confidence            1 11112 122334444444333 23577778888777665432       1222222     11 22233333322122


Q ss_pred             cEEEEeeCCCceEEEECC
Q 016522          220 RMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~  237 (388)
                      ..++..+.+|.+..++..
T Consensus       637 d~V~liT~~GrlLrf~v~  654 (735)
T TIGR01062       637 DMIAAITEAGRMLVFPID  654 (735)
T ss_pred             CEEEEEeCCCcEEEEEHH
Confidence            346666677777777654

Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.91  E-value=9.3  Score=31.02  Aligned_cols=151  Identities=17%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-C--CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      -.+||+.+++....-...+....+-.+-+||+++.+|+. +  ..+++++..... ....+......-.....--.....
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-GTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-CCCCceECcccccCCCccccceEC
Confidence            357888877654332223333444567889999999876 2  357888765411 001111111001122333345556


Q ss_pred             eCCCceEEEeeCCC-eEEEEecCCC-c-eEE-EeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcc
Q 016522          168 PDEDTHLITSSGDQ-TCVLWDITTG-L-RTS-VFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (388)
Q Consensus       168 ~~~~~~l~~~~~dg-~v~i~d~~~~-~-~~~-~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (388)
                      ++| ..++.|+... ...+|..... . ... .+............. -+...| ++++|+.+..+.  .+||.... ..
T Consensus       127 ~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s--~i~d~~~n-~v  201 (243)
T PF07250_consen  127 PDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGS--IIYDYKTN-TV  201 (243)
T ss_pred             CCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCc--EEEeCCCC-eE
Confidence            777 4566665553 3445543221 1 111 111000001111111 334455 788888777654  45677655 34


Q ss_pred             eEEEe
Q 016522          243 VRTFH  247 (388)
Q Consensus       243 ~~~~~  247 (388)
                      ++.+.
T Consensus       202 ~~~lP  206 (243)
T PF07250_consen  202 VRTLP  206 (243)
T ss_pred             EeeCC
Confidence            44443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=89.88  E-value=3.6  Score=39.03  Aligned_cols=148  Identities=14%  Similarity=0.063  Sum_probs=84.8

Q ss_pred             eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC----CcceEEEec
Q 016522          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----SRAVRTFHG  248 (388)
Q Consensus       173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~  248 (388)
                      .+..|+.++.+.++.-..+....... .........+.++.+++   .-+..|..||++-.|--...    ..+-..+..
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~-~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~  624 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTS-EPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT  624 (925)
T ss_pred             cccccCccceeEEeeccCCcccceec-cCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCCCcccccc
Confidence            47788899999998765332222211 11134455666776664   23555666666655432111    011222223


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ...++.+.++..|   ++.++.+|.|.++...+...........  .+...|+++.+..+|-+++..+.| .++.++..+
T Consensus       625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahq--ee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet  698 (925)
T KOG3522|consen  625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQ--EEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET  698 (925)
T ss_pred             CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHH--hhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence            3457778887644   6667789999999988765554443322  233358999888777666666544 455555544


Q ss_pred             ce
Q 016522          329 AK  330 (388)
Q Consensus       329 ~~  330 (388)
                      ..
T Consensus       699 l~  700 (925)
T KOG3522|consen  699 LW  700 (925)
T ss_pred             cC
Confidence            33

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=89.71  E-value=17  Score=33.63  Aligned_cols=259  Identities=14%  Similarity=0.197  Sum_probs=123.1

Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeC-CccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522           76 TSERNRIVSASQDGRLIVWNALTSQK--THAIKLP-CAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (388)
Q Consensus        76 ~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (388)
                      ..++..++.+..+|.+....+.....  ....-+. .....++.+..+| .+++.|+.-|.=.++.+..     ..+...
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-----~~l~~~  293 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-----SNLEVL  293 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-----ESEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-----CCcEEE
Confidence            45667888899999998877654331  1111112 3445566665554 5777777766544554442     122233


Q ss_pred             EEecccccceEEEEEEeC---CCc------eEEEee---CCCeEEEEecCCCceEE--EeecccccCCccCeEEEEeeCC
Q 016522          152 RMLSGHKGYVSCCQYVPD---EDT------HLITSS---GDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~---~~~------~l~~~~---~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ..+. .-++|.+++..+.   +..      .+++++   .+|.+++..  .|-...  ...... ...-..+..+.....
T Consensus       294 ~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~-l~~v~~iW~l~~~~~  369 (504)
T PF10433_consen  294 DSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSE-LPGVTGIWTLKLSSS  369 (504)
T ss_dssp             EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEE-ESTEEEEEEE-SSSS
T ss_pred             Eecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccC-CCCceEEEEeeecCC
Confidence            3333 3478888888643   221      344443   467888764  333222  211111 112344555554432


Q ss_pred             CCcEEEEeeCCCceEEEECCC--CCcceEEEe--cc---cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          218 NSRMFVSGSCDSTARLWDTRV--ASRAVRTFH--GH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +..+++.+..+ .-+++.+..  ....+....  +.   ...+.+-.+.  +..++=... ..|++.+...++....+..
T Consensus       370 ~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~  445 (504)
T PF10433_consen  370 DHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKP  445 (504)
T ss_dssp             SBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-
T ss_pred             CceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeC
Confidence            35666666654 444555531  112222211  11   1122222222  344444443 3488888877776665544


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc-CCCCCcCCCeeEEEECC
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGLSA  353 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  353 (388)
                      ..+    ..|.+.+..  +.+++.+..++.+..+.+.......... .........|.|+...|
T Consensus       446 ~~~----~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  446 PAG----SIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             TTS-------SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCC----CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            322    236665554  4577777788899999887766653331 00012467888888766

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.55  E-value=10  Score=35.85  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=66.9

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..++++.-+|.|..++.+..||.|.+|++.....       . .+.....+-..+.|...|   +++...|..+.-|.- 
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-------s-ki~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~-   82 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-------S-KICEEAKPKENLVFTNHG---LVTATSDRRALAWKE-   82 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccch-------h-hhhhhcCCccceeeeccc---eEEEeccchhheeec-
Confidence            4477888899999999999999999999876331       0 011112233445666544   788888888888863 


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      +|.....+.-  .........++.+.|...+.  +|+.-|.|.-+|.
T Consensus        83 dgvvqqqfdy--ndqsekefss~~cdptaqnv--vgtlcggv~q~dc  125 (1636)
T KOG3616|consen   83 DGVVQQQFDY--NDQSEKEFSSILCDPTAQNV--VGTLCGGVEQFDC  125 (1636)
T ss_pred             cCcchhhccc--cchhhhhccceecCchhhhh--hhhhccceeeehH
Confidence            3433333311  12334456667777744443  3444455666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-170
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-84
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-84
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-84
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-83
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-83
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-74
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-19
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-14
2h9l_A	329	Wdr5delta23 Length = 329		4e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-13
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-12
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-09
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-08
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		5e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/369 (78%), Positives = 329/369 (89%), Gaps = 2/369 (0%)
Query: 3   SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
           +SV+ELKE+HAAA  +VNSLRERL+Q+RQ LLD DV  YS++QGR  VSF PTDLVCCRT
Sbjct: 2   ASVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRT 61
Query: 63  LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
           LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVM CAF+P GQ
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
           SVACGGLDS CSIFNL+S  D+DGN+PVSR+L+GHKGY S CQYVPD++T LIT SGDQT
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
           CVLWD+TTG R S+FG EF SGHTADVLS+SI+  N+ MF+SGSCD+T RLWD R+ SRA
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
           VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++    +NE+P V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
           TS+AFSISGRLLFAGYSNGDCYVWDTLLA++VLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 361 GSWDTNLKV 369
           GSWD NLK+
Sbjct: 362 GSWDKNLKI 370

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  307 bits (787), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  306 bits (785), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct: 15  LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 74
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 75  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 134
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 135 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 189
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 190 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 242
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 299
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 300 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  306 bits (785), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16  IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
           +  ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y+
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
           + W ++   ++SASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++
Sbjct: 61  MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG 
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
           +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           +N + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/354 (44%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19  VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A    +  +   +  P   +  RT   L+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   ++SASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                  +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y     +N I  +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 222/362 (61%), Gaps = 22/362 (6%)
Query: 10  ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGK 69
           E  A+      SL+ +L+++R +L DV++            + G   +   RTL+GH  K
Sbjct: 11  ETLASLKSEAESLKGKLEEERAKLHDVEL----HQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 70  VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129
           V  +DW  ++ RIVS+SQDG++IVW++ T+ K HA+ +PC WVM CA++P+G ++ACGGL
Sbjct: 67  VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 130 DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188
           D+ CS++ L    DK+ N+   +  ++ H  Y+S C +  + D  ++T+SGD TC LWD+
Sbjct: 127 DNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDV 183
Query: 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFH 247
            +G     F      GH ADVL + ++ S +   FVSG CD  A +WD R + + V+ F 
Sbjct: 184 ESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFE 237
Query: 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307
            HE DVN+V+++P G+ F +GSDD TCRL+D+R   ++ +Y +   E+ I   +S+ FS+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSL 294
Query: 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367
           SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350
Query: 368 KV 369
           +V
Sbjct: 351 RV 352

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             +TL GH+  V+ + ++ +   I SAS D  + +WN    Q    +    + V   AFS
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFS 353
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P GQ++A    D    ++N N      G L   + L+GH   V    + PD  T + ++S
Sbjct: 354 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-IASAS 404
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D+T  LW+    L  ++      +GH++ V  V+ S  + +   S S D T +LW+   
Sbjct: 405 DDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNRN- 456
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
             + ++T  GH   V  V F PDG    + SDD T +L++ R G  LQ            
Sbjct: 457 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-----TGHSS 509
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGLSADG 355
            V  +AFS  G+ + +   +    +W+    LL  +          H   +  +  S DG
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDG 561
Query: 356 SALCTGSWDTNLKV 369
             + + S D  +K+
Sbjct: 562 QTIASASSDKTVKL 575

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 18/267 (6%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           R L+GH+  V  +  ++  N  VSAS D  L +WN    Q  +        V++ AFSP 
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG- 179
            + +  GG D+   ++N+       G    +     H  +VSC ++ P  D  +I S G 
Sbjct: 121 NRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           D    +WD+ TG   +        GHT  V SV++S   S +  S   D  ARLWD    
Sbjct: 175 DNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKG 228
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEI 297
                   G    +N + F P+       ++ G  R+FD+     +     +H   +  +
Sbjct: 229 EALSEMAAG--APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIV 285
Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVW 324
           P   SIA+S  G  L++GY++    VW
Sbjct: 286 PECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
           L C R L GH G V  L +  +   I++ S D  + VW+  T +  + +   C  V+   
Sbjct: 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
           F+  G  V C   D   +++++ SPTD    + + R+L GH+  V+   +   +D ++++
Sbjct: 221 FN-NGMMVTCSK-DRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVS 271
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
           +SGD+T  +W+ +T         EF          ++      R+ VSGS D+T RLWD 
Sbjct: 272 ASGDRTIKVWNTSTC--------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
              +  +R   GHE  V  ++F  D  R  +G+ DG  +++D+
Sbjct: 324 ECGA-CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 55/243 (22%)
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           Q +  G  D+   I++ N+       L   R+L+GH G V C QY   ++  +IT S D 
Sbjct: 144 QKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 182 TCVLWDITTG--LRT------SVFGGEFQSGHTA-----------DVLS----------- 211
           T  +WD+ TG  L T      +V    F +G              D+ S           
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 212 -----VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266
                V++   + +  VS S D T ++W+T      VRT +GH+  +  +++        
Sbjct: 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDRLVV 310
Query: 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
           +GS D T RL+DI  G  L+V     G  E+  V  I F    + + +G  +G   VWD 
Sbjct: 311 SGSSDNTIRLWDIECGACLRVL---EGHEEL--VRCIRF--DNKRIVSGAYDGKIKVWDL 363
Query: 327 LLA 329
           + A
Sbjct: 364 VAA 366

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 18/275 (6%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           +  +WD+ TG+            H+  V +V  +   S + VS S D   R+WDT     
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
                      V+ VKF P+G      + D T +L+D   G  L+ Y     E    +  
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
              FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 125
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 126 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 177
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 234
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 151
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 152 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 203
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 260
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 128
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 129 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 180
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 237
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 146
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 147 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 198
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 255
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 153
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 154 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 205
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 262
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 130
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 131 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 182
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 239
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 83  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 134
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 135 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 186
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 243
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + ++S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
           +  +WD+ TG  L+T          H+  V +V  +   S + VS S D   R+WDT   
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
                        V+ VKF P+G      + D T +L+D   G  L+ Y     E    +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
                FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 18/275 (6%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL GH   V S+ ++     + S+S D  + +W A   +    I      +   A+S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             +     D    I++++S           + L GH  YV CC + P  +  +++ S D+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           +  +WD+ TG+            H+  V +V  +   S + VS S D   R+WDT     
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
                      V+ VKF P+G      + D   +L+D   G  L+ Y     E    +  
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
              FS++ G+ + +G  +   Y+W+    ++V  L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 136/359 (37%), Gaps = 110/359 (30%)
Query: 62  TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           TL+GH G V  +  T +  + I+SAS+D  +I+W     +  + I               
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 55
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                                          R L GH  +VS    +  +    ++ S D
Sbjct: 56  ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 84
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
            T  LWD+TTG  T  F      GHT DVLSV+ S S++R  VSGS D T +LW+T    
Sbjct: 85  GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
                                                   +A+  ++T H GH G +NTV
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
              PDG+   +G  DG   L+D+  G  L   Y   G + I    ++ FS   R      
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 251
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           +     +WD L  K++++      + +   +   + T L  SADG  L  G  D  ++V
Sbjct: 252 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 136/359 (37%), Gaps = 110/359 (30%)
Query: 62  TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           TL+GH G V  +  T +  + I+SAS+D  +I+W     +  + I               
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 78
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                                          R L GH  +VS    +  +    ++ S D
Sbjct: 79  ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 107
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
            T  LWD+TTG  T  F      GHT DVLSV+ S S++R  VSGS D T +LW+T    
Sbjct: 108 GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
                                                   +A+  ++T H GH G +NTV
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
              PDG+   +G  DG   L+D+  G  L   Y   G + I    ++ FS   R      
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 274
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           +     +WD L  K++++      + +   +   + T L  SADG  L  G  D  ++V
Sbjct: 275 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 35/317 (11%)
Query: 39  AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYS-LDWTSERNRIVSASQDGRLIVWNAL 97
           + Y R Q R   ++   +L   + L+GH   V + L +    NRIVS S D  L VW+A+
Sbjct: 91  SAYIR-QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG--NRIVSGSDDNTLKVWSAV 147
Query: 98  TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157
           T +    +      V +         +  G  D    ++N  +             L GH
Sbjct: 148 TGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG-------ECIHTLYGH 198
Query: 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217
              V C       +  +++ S D T  +WDI TG    V       GH A V  V   G 
Sbjct: 199 TSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDG- 249
Query: 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
             R  VSG+ D   ++WD    +  + T  GH   V +++F  DG    +GS D + R++
Sbjct: 250 --RRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304
Query: 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337
           D+ TG+ +              +TS    +   +L +G ++    +WD    + +  L  
Sbjct: 305 DVETGNCIHTLTGHQS------LTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 338 LQNSHEGRITCLGLSAD 354
             N H+  +TCL  + +
Sbjct: 358 -PNKHQSAVTCLQFNKN 373

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 43/281 (15%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
           ++ +  FSP G+ +A G  D +  I+++        N  +  +L GH+  +    Y P  
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDYFPSG 177
Query: 171 DTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227
           D  L++ SGD+T  +WD+ TG   L  S+  G         V +V++S  + +   +GS 
Sbjct: 178 D-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------VTTVAVSPGDGKYIAAGSL 227
Query: 228 DSTARLWDTRVASRAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
           D   R+WD+       R      +  GH+  V +V F  DG    +GS D + +L++++ 
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 282 GHQL-----------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330
            +             +V Y  H +     V S+A + +   + +G  +     WD     
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 331 VVLNLGSLQNSHEGRITCLG--LSADGSALCTGSWDTNLKV 369
            +L L   +NS        G  L  + +   TGS D   ++
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           +G  G++Y L+W +++    +     RL+V        T A+   C       FS  GQ 
Sbjct: 594 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 636
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           +A  G D    +F   +     G   +   +  H+  V CC +  D D+++ T S D+  
Sbjct: 637 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 688
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDSTARLWDTR 237
            +WD  TG          +  HT D  S  ++       SN  +  +GS D   +LWD  
Sbjct: 689 KIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
                  T  GH   VN  +F PD     + S DGT RL+D+R+ ++
Sbjct: 739 -QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 130/329 (39%), Gaps = 52/329 (15%)
Query: 59   CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
            C  T+ GH   V    ++ +   + S S DG L +W+  ++ +  +I +   +       
Sbjct: 742  CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 801
Query: 112  ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
                  V  C++S  G  +     + V  +F++++         ++ + +GH   +  C 
Sbjct: 802  EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 854
Query: 166  YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
            + P +  HL   +  Q CV LW+I + L+ +        GH + V  V  S   S  F++
Sbjct: 855  FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 906
Query: 225  GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             S D T R+W+T+   +        E DV     F +        D+   R   +  G  
Sbjct: 907  ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 960
Query: 285  LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
             Q+ Y    +       PH+  +AF         G  +G   + + L    V + G    
Sbjct: 961  GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1007
Query: 341  SHEGRITCLGLSADGSALCTGSWDTNLKV 369
             H+  +  +  +ADG  L + S D+ ++V
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQV 1036

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 64  QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
           +G  G++Y L+W +++    +     RL+V        T A+   C       FS  GQ 
Sbjct: 587 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 629
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
           +A  G D    +F   +     G   +   +  H+  V CC +  D D+++ T S D+  
Sbjct: 630 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 681
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDSTARLWDTR 237
            +WD  TG          +  HT D  S  ++       SN  +  +GS D   +LWD  
Sbjct: 682 KIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
                  T  GH   VN  +F PD     + S DGT RL+D+R+ ++
Sbjct: 732 -QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 130/329 (39%), Gaps = 52/329 (15%)
Query: 59   CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
            C  T+ GH   V    ++ +   + S S DG L +W+  ++ +  +I +   +       
Sbjct: 735  CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
Query: 112  ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
                  V  C++S  G  +     + V  +F++++         ++ + +GH   +  C 
Sbjct: 795  EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 847
Query: 166  YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
            + P +  HL   +  Q CV LW+I + L+ +        GH + V  V  S   S  F++
Sbjct: 848  FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 899
Query: 225  GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
             S D T R+W+T+   +        E DV     F +        D+   R   +  G  
Sbjct: 900  ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 953
Query: 285  LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
             Q+ Y    +       PH+  +AF         G  +G   + + L    V + G    
Sbjct: 954  GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1000
Query: 341  SHEGRITCLGLSADGSALCTGSWDTNLKV 369
             H+  +  +  +ADG  L + S D+ ++V
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQV 1029

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 150/396 (37%), Gaps = 62/396 (15%)
Query: 6   SELKERHAAAIET-----------VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGP 54
            EL +++A  +E            V  L  +L + +++      +G    Q R P  + P
Sbjct: 41  EELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEF----TSGGPLGQKRDPKEWIP 96
Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
                   L GH   V  + +    + +VSAS+D  + VW+  T      +K     V  
Sbjct: 97  RPPEKY-ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
            +F  +G+ +A    D    +++              R + GH   VS    +P+ D H+
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSIMPNGD-HI 207
Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
           +++S D+T  +W++ TG     F     +GH   V  V     +  +  S S D T R+W
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Query: 235 DTRVASRAVRT-FHGHEGDVNTVKFFPD--------------------GNRFGTGSDDGT 273
              VA++  +     H   V  + + P+                    G    +GS D T
Sbjct: 262 --VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
            +++D+ TG  L              V  + F   G+ + +   +    VWD    + + 
Sbjct: 320 IKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            L    N+HE  +T L        + TGS D  +KV
Sbjct: 375 TL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    F   
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
              +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D
Sbjct: 67  KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
                  G E  VN V ++  PD     T SDD T +++D +T   +        E  + 
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
           +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    F   
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
              +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D
Sbjct: 67  KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
            T  LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
                  G E  VN V ++  PD     T SDD T +++D +T   +        E  + 
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
           +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 42/336 (12%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-----CA 110
           LV   T++ H   V ++    +  + IVSAS+D  +I+W      K + +          
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
           +V     S  GQ    G  D    +++L +          +R   GH   V    +  D 
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-------TRRFVGHTKDVLSVAFSLD- 483
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSR-MFVSGSCD 228
           +  ++++S D+T  LW+     + ++  GGE   GH   V  V  S +  +   VS S D
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGE---GHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
            T ++W+     +   T  GH G V+TV   PDG+   +G  DG   L+D+  G +L   
Sbjct: 541 KTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--- 596
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-- 346
           Y     N + H  ++ FS +   L A   +G   +WD     +V +L     +   +   
Sbjct: 597 YSLEA-NSVIH--ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 347 -------------TCLGLSADGSALCTGSWDTNLKV 369
                        T L  SADGS L +G  D  ++V
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 21/284 (7%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
           L   +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
           F      +  G  D    +FN N+     G   V      H  Y+      P +  ++++
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLS 114
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
            S D T  LW+            +   GH   V+ V+ +  +   F SG  D T ++W  
Sbjct: 115 GSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 237 RVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
             ++       G E  VN V ++  PD     T SDD T +++D +T   +        E
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----E 225
Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
             + +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 21/284 (7%)
Query: 57  LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
           L   +T    + +V  +D+      +++    GR+ +WN  T  +  +I++    V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
           F      +  G  D    +FN N+     G   V      H  Y+      P +  ++++
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLS 114
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
            S D T  LW+            +   GH   V+ V+ +  +   F SG  D T ++W  
Sbjct: 115 GSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 237 RVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
             ++       G E  VN V ++  PD     T SDD T +++D +T   +        E
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----E 225
Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
             + +V+   F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 48  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 82  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
             ++NT+   PDG    +   DG   L+++                              
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
           T   ++V+              +  + +   PH  S+A+S  G+ LFAGY++    VW  
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 327 LLA 329
           + A
Sbjct: 316 MTA 318

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 41
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 42  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 75
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 76  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 129
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 130 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 189
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
             ++NT+   PDG    +   DG   L+++                              
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 249
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
           T   ++V+              +  + +   PH  S+A+S  G+ LFAGY++    VW  
Sbjct: 250 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Query: 327 LLA 329
           + A
Sbjct: 310 MTA 312

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 48  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 82  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
             ++NT+   PDG    +   DG   L+++                              
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
           T   ++V+              +  + +   PH  S+A+S  G+ LFAGY++    VW  
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 327 LLA 329
           + A
Sbjct: 316 MTA 318

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 123/366 (33%), Gaps = 147/366 (40%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 48  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 82  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------------ 297
             ++NT+   PDG    +   DG   L+++     +   Y    ++E+            
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDEVFSLAFSPNRYWL 252
Query: 298 ----------------------------------PHVTSIAFSISGRLLFAGYSNGDCYV 323
                                             PH  S+A+S  G+ LFAGY++    V
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 324 WDTLLA 329
           W  + A
Sbjct: 313 WQVMTA 318

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 53/287 (18%)
Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
           + L GH   V  L  + E    +S+S D  L +W+  T           + V + AFSP 
Sbjct: 70  KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 121 GQSVACGGLDSVCSIFNL-----NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
            + +   G +    ++N+      S  +K+           H  +VSC +Y P      I
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKEN----------HSDWVSCVRYSP------I 173
Query: 176 TSSGDQT--------CVLWDITTGLRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMF 222
             S ++          V WD     R  V+   FQ       H ++V  +SIS  N +  
Sbjct: 174 MKSANKVQPFAPYFASVGWD----GRLKVWNTNFQIRYTFKAHESNVNHLSIS-PNGKYI 228
Query: 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282
            +G  D    +WD    +   R F      +N + F P       G+D G  ++F++ T 
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAG-STINQIAFNPKLQWVAVGTDQG-VKIFNLMTQ 286
Query: 283 HQLQV----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
            +  V             Q G+N  P  TS+A++  G+ LFAG+++G
Sbjct: 287 SKAPVCTIEAEPITKAEGQKGKN--PQCTSLAWNALGKKLFAGFTDG 331

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 153 MLSGHKGYVSCC-----QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GH 205
           +L GH  +V+       Q   ++   LI+ S D+T ++W +    +   FG   ++  GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
              V  +++S  N    +S S D T RLWD R  +   R F GH+ +V +V F PD  + 
Sbjct: 76  NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPDNRQI 133
Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-----N 318
            +   +   +L++I    +     +++  + +  V  + I  S +    FA Y      +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           G   VW+T        +     +HE  +  L +S +G  + TG  D  L +
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 123/358 (34%), Gaps = 141/358 (39%)
Query: 57  LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           LV   TL+GH G V SL  ++ + N ++SAS+D  LI W           KL        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
               TG                     D+   +PV R   GH   V  C    D   + +
Sbjct: 48  ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
           ++S D+T  LWD+ TG     F      GH +DV+SV I    S M +SGS D T ++W 
Sbjct: 82  SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
                                                  D  V +  +  F       GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
             ++NT+   PDG    +   DG   L+++                              
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
           T   ++V+              +  + +   PH  S+A+S  G+ LFAGY++    VW
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           +L+GH   V S+D +       S+S D  + +W+    ++  +I        T AFSP  
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           Q +A G      +IF + S   +         L     ++    Y PD   +L + + D 
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-------YSLDTRGKFILSIAYSPD-GKYLASGAIDG 186
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
              ++DI TG            GH   + S++ S  +S++ V+ S D   +++D + A+ 
Sbjct: 187 IINIFDIATGKLLHTL-----EGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANL 240
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--------GHQLQVYYQQHG 293
           A  T  GH   V  V F PD   F + S D + +++D+ T         HQ QV+  ++ 
Sbjct: 241 A-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Query: 294 EN 295
            N
Sbjct: 300 GN 301

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 27/281 (9%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V  R+ +GH+  V     T++    +SAS D  L +W+  T +         + V +   
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
                 +  G  D    ++ +               L GH  +VS  + VP    D+D+ 
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
            I S+G D+    W++      + F      GH +++ +++ S  +  +  S   D    
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIX 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
           LW+   A +A  T    + +V ++ F P  NR+   +   T  ++F +   +    L+  
Sbjct: 222 LWNL-AAKKAXYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
           +  + +   PH  S+A+S  G+ LFAGY++    VW    A
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF 197
           S  D  G       L GH+       + P+   HL+++S D T  LWDI+   +    V 
Sbjct: 159 SKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD 218
Query: 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNT 255
                +GHTA V  VS    +  +F S + D    +WDTR    S+   +   H  +VN 
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 256 VKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI 303
           + F P       TGS D T  L+D+R   +L+++  +  ++EI      PH  +I
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI 332

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
           S D T  L+D+R   +L+++  +  ++EI      PH  +I A S + R L         
Sbjct: 297 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 346
Query: 322 YVWDTLLAKV 331
           +VWD  L+K+
Sbjct: 347 HVWD--LSKI 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
           S D T  L+D+R   +L+++  +  ++EI      PH  +I A S + R L         
Sbjct: 299 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 348
Query: 322 YVWDTLLAKV 331
           +VWD  L+K+
Sbjct: 349 HVWD--LSKI 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
           S D T  L+D+R   +L+++  +  ++EI      PH  +I A S + R L         
Sbjct: 301 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 350
Query: 322 YVWDTLLAKV 331
           +VWD  L+K+
Sbjct: 351 HVWD--LSKI 358

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRT------ 281
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R       
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 282 ---GHQ---LQVYYQQHGE 294
               H+    QV++  H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRT------ 281
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R       
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 282 ---GHQ---LQVYYQQHGE 294
               H+    QV++  H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 123/334 (36%), Gaps = 39/334 (11%)
Query: 49  PVSFGPTDLVCCRTLQGHAGKVYSLDW--------TSERNRIVSASQDGRLIVWN-ALTS 99
           PV F P D +    +  HA ++ +L+          S   R V     G + VW+ +   
Sbjct: 25  PVPF-PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83
Query: 100 QKTHAIKLPCA----WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS 155
            K+   +L C     ++ +C   P G ++  GG  S  SI++L +PT +     +   L+
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELT 138
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
                       PD      +   D    +WD    L       +FQ GHT     + IS
Sbjct: 139 SSAPACYALAISPDSKV-CFSCCSDGNIAVWD----LHNQTLVRQFQ-GHTDGASCIDIS 192
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275
              ++++ +G  D+T R WD R   +  +  H     + ++ + P G     G +     
Sbjct: 193 NDGTKLW-TGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335
           +  +    + Q++  +        V S+ F+  G+   +   +     W T     +   
Sbjct: 250 VLHVNKPDKYQLHLHESC------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--- 300
Query: 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
              Q+     +    +S D   + TGS D    V
Sbjct: 301 --FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 115 CAFSPTGQSVAC---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
           CA +P   ++ C   GG      +  L      D N+P   ++ GH   V    + P  D
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAWCPHND 94
Query: 172 THLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226
             + + S D T ++W+I  G     LR  V   E   GHT  V  V+   +   + +S  
Sbjct: 95  NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAG 151
Query: 227 CDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
           CD+   +WD    + AV T     H   + +V +  DG    T   D   R+ + R G  
Sbjct: 152 CDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-- 208
Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 341
             V  ++   +E        F   G++L  G+   S     +WDT   +  L+L  L  S
Sbjct: 209 -TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
           V   A+SP G  +A    D+   I+  N       +      L GH+  V    + P  +
Sbjct: 64  VRKVAWSPCGNYLASASFDATTCIWKKNQ-----DDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
             L T S D++  +W++              + HT DV  V +   +  +  S S D T 
Sbjct: 119 L-LATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDVKHV-VWHPSQELLASASYDDTV 174
Query: 232 RLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
           +L+           T  GHE  V ++ F P G R  + SDD T R++
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL+GH   V  +    + +++ S S+DG + +W+         +     ++ +  +    
Sbjct: 13  TLKGHDQDVRDVV-AVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK 71
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
           + +  GG D+  +   L + + +D   P+  ++ GH+G V    +   +D  +I+ S D+
Sbjct: 72  ELLLFGGKDTXINGVPLFATSGED---PLYTLI-GHQGNVCSLSF---QDGVVISGSWDK 124
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
           T  +W      +        Q+ H A V    +   +   F++ S D T +LW      +
Sbjct: 125 TAKVW------KEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASADKTIKLWQN---DK 174
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
            ++TF G   DV       D   F + S+DG  +L D  TG  L+ Y
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTY 221

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 199
           D N+P   ++ GH   V    + P  D  + + S D T ++W+I  G     LR  V   
Sbjct: 71  DKNVP---LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVK 257
           E   GHT  V  V+   +   + +S   D+   +WD    + AV T     H   + +V 
Sbjct: 128 E---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVD 183
Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 316
           +  DG    T   D   R+ + R G    V  ++   +E        F   G++L  G+ 
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 317 --SNGDCYVWDTLLAKVVLNLGSLQNS 341
             S     +WDT   +  L+L  L  S
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 130/333 (39%), Gaps = 55/333 (16%)
Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQD----GRLIVWNALTSQKTHAIKLPCAWVM 113
           +   T+   +G V  + W SE  RI +  +     G + +++  TS     +      + 
Sbjct: 94  ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN--LTGQARAMN 151
Query: 114 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
           +  F P+    +  G  D+  +IF    P  K            H  +V   +Y PD  +
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFE--GPPFK-----FKSTFGEHTKFVHSVRYNPD-GS 203
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDST 230
              ++ GD T VL++   G +T VF  +      H+  V  ++ S   +++  S S D T
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKT 262
Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG--------------TGSDDGTCRL 276
            ++W+  VA+  V             K  P G R                + S +G    
Sbjct: 263 IKIWN--VATLKVE------------KTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336
            +   G   QV Y   G N+   +T+++ S  G+ LF+  + G    WD       ++  
Sbjct: 309 VNPELGSIDQVRY---GHNKA--ITALSSSADGKTLFSADAEGHINSWDISTG---ISNR 360
Query: 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
              + H   IT +  ++ G  L T SWD +LKV
Sbjct: 361 VFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 392

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 149 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 199
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 260 APGEGGWVPLQTFTQHQG 277

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 160 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 210
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 271 APGEGGWVPLQTFTQHQG 288

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 69  YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRL-----RNMTSHSARVGSLSW---NS 119
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 280 RTGH----QLQVYYQQHG 293
             G      LQ + Q  G
Sbjct: 180 APGEGGWVPLQTFTQHQG 197

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
           L+GH+  ++  +Y  + D  L + S D +  +W    G R          GHT  + S+ 
Sbjct: 28  LTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSID 81
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-- 271
           +    ++  V+GS D + +LWD     + V T+      V  V+F P GN F    D+  
Sbjct: 82  VD-CFTKYCVTGSADYSIKLWDVS-NGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVM 138
Query: 272 ---GTCRLFDIR---TGHQLQVYYQQHGENEIPH-----VTSIAFSISGRLLFAGYSNGD 320
              G+  +++I      H+L    ++     I H      T   +S  G+ + AG+ +G 
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
              +D       ++   L   HE  I+ +  S D +   T S DTN
Sbjct: 199 ISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTN 241

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 32/302 (10%)
Query: 73  LDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131
           LDW++    +V+ + +  + VWNA + S    A      +V +  +S  G  ++ G  + 
Sbjct: 99  LDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG 156
Query: 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191
           +  I+++ S T         R ++GH+  V C  +    + H++ SSG ++  +      
Sbjct: 157 LVDIYDVESQTKL-------RTMAGHQARVGCLSW----NRHVL-SSGSRSGAIHHHDVR 204
Query: 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251
           +     G     GH+++V  ++   S+     SG  D+  ++WD R +S    T   H  
Sbjct: 205 IANHQIGT--LQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNA 260
Query: 252 DVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308
            V  V + P  +     G G+ D     ++  TG ++         +    VTS+ +S  
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPH 314
Query: 309 GRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
            + + +  G+ + +  +W    + +   +     +H+ R+    LS DG  L T + D N
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRILSTAASDEN 372
Query: 367 LK 368
           LK
Sbjct: 373 LK 374

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 47/186 (25%)
Query: 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------------- 200
           H+  V   Q+ P +     +SS D+T  +WD  T     VF  E                
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 201 -----------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237
                                     GH  ++L+VS S     +  + S DS  +LWD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC------RLFDIRTGHQLQVYYQQ 291
            AS  + T   H G  +  +     N    G  +G C       L  + T ++++++   
Sbjct: 218 RASGCLITLDQHNGKKS--QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 292 HGENEI 297
           +GEN +
Sbjct: 276 NGENTL 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.85
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.8
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.64
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.49
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.46
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.18
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.09
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.08
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.05
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.02
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.01
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.99
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.96
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.94
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.94
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.85
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.77
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.7
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.66
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.18
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.02
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.98
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.94
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.82
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.78
3ott_A	758	Two-component system sensor histidine kinase; beta	97.76
3ott_A	758	Two-component system sensor histidine kinase; beta	97.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.66
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.59
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.55
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.51
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.39
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.17
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.95
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.88
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.84
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.83
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.62
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.34
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.28
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.56
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.44
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.21
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.12
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.11
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.46
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	90.85
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.71
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	90.41
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.17
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	88.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.71
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	87.17
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	86.8
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	86.02
3ljm_A	31	Coil Ser L9C; de novo design, three stranded coile	85.72
1bb1_B	36	Designed, thermostable heterotrimeric coiled coil;	85.4
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	84.7
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	84.52
3azd_A	37	Short alpha-tropomyosin, transcription factor GCN;	80.27

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-62  Score=429.53  Aligned_cols=371  Identities=78%  Similarity=1.301  Sum_probs=332.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEE
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV   83 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~   83 (388)
                      ++++++++++.++.+++++++++++.++.+.+..+..+.......+..|+|....+.++|.+|.+.|++++|+|++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~   82 (380)
T 3iz6_a            3 SVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV   82 (380)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCCSCHHHHGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHhhhcccccccccccceeEEeecccccccEEEEEEEcCCCCEEE
Confidence            36778888888889999999999988888877777777777777788899999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEE
Q 016522           84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC  163 (388)
Q Consensus        84 t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (388)
                      +|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++|++..........+....+.+|.+.|.+
T Consensus        83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            99999999999999999999999999999999999999999999999999999998765555555667778999999999


Q ss_pred             EEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522          164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  243 (388)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (388)
                      +.|.|+++..+++|+.|+.|++||+.+++.+..+......+|...|.++++++.++++|++|+.||.|++||++.....+
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~  242 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV  242 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            99999877789999999999999999999988876655578999999999988788999999999999999998666788


Q ss_pred             EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcE
Q 016522          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDC  321 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (388)
                      ..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.....  ......+++++|+|+|++|++|+.||.|
T Consensus       243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence            89999999999999999999999999999999999999988877654322  1223458999999999999999999999


Q ss_pred             EEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++||+..++.+..+.....+|.+.|++++|+|+|.+|++|+.||.|+||....
T Consensus       323 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            99999999888777655578999999999999999999999999999998653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-57  Score=388.47  Aligned_cols=338  Identities=47%  Similarity=0.921  Sum_probs=291.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCc
Q 016522           11 RHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGR   90 (388)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~   90 (388)
                      |..++++|.++++++++..++.+.+..+.......    ........+..++|.+|.+.|++++|+|++++|++|+.||+
T Consensus         3 e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~   78 (340)
T 1got_B            3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNI----DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK   78 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTS----CCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCC----CccccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            34455566666666666666655544333322111    11222356778899999999999999999999999999999


Q ss_pred             EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC
Q 016522           91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE  170 (388)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (388)
                      |++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+..   ........+.+|.+.|.++.|++++
T Consensus        79 v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~  155 (340)
T 1got_B           79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN  155 (340)
T ss_dssp             EEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT
T ss_pred             EEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999998743   2234566788999999999999975


Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                        .+++++.|+.|++||+++++....+     .+|...|.+++|+| ++.++++|+.||.|++||+++. .....+.+|.
T Consensus       156 --~l~s~s~d~~i~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~  226 (340)
T 1got_B          156 --QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHE  226 (340)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-SEEEEECCCS
T ss_pred             --cEEEEECCCcEEEEECCCCcEEEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCc
Confidence              5899999999999999999998888     78999999999999 8899999999999999999987 7888899999


Q ss_pred             CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      ..|.+++|+|++++|++|+.||.|++||+++++.+..+..   ......|++++|+|+|++|++|+.||.|++||+.+++
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            9999999999999999999999999999999887766542   2233469999999999999999999999999999999


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .+..+    .+|.+.|++++|+|+|.+|++|+.||.|+||+
T Consensus       304 ~~~~~----~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          304 RAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEE----ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EeeEe----ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            88888    78999999999999999999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.8e-56  Score=382.93  Aligned_cols=345  Identities=41%  Similarity=0.820  Sum_probs=299.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC
Q 016522            8 LKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ   87 (388)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~   87 (388)
                      .+++...++.|.+.++.++++.+....+..+.........    +.....+..++|.+|.+.|++++|+|++++|+||+.
T Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~   84 (354)
T 2pbi_B            9 ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEA----LGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ   84 (354)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCC----CCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhccCCcc----ccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeC
Confidence            4556677888888888888888877766665554333222    233456788899999999999999999999999999


Q ss_pred             CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      ||+|++||..+++....+..+...|.+++|+|++.++++|+.|+.+++|++...... ........+..|...|.+++|+
T Consensus        85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~  163 (354)
T 2pbi_B           85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFT  163 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-CSGGGCEEEEECSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-cccccceeeeccCCcEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999764321 1223456677899999999999


Q ss_pred             eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC-CCcEEEEeeCCCceEEEECCCCCcceEEE
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (388)
                      |++ ..+++++.|++|++||+++++.+..+     .+|...|.+++++|. ++++|++|+.||.|++||++++ ..+..+
T Consensus       164 ~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~  236 (354)
T 2pbi_B          164 NSD-MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF  236 (354)
T ss_dssp             SSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred             CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence            986 67999999999999999999998888     789999999999884 4689999999999999999987 788889


Q ss_pred             ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      .+|...|.+++|+|++.+|++++.|+.|++||++.+.....+..   ......+.+++|+|++++|++|+.|+.|++||+
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            99999999999999999999999999999999998877665533   222345899999999999999999999999999


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      .+++.+..+    .+|.+.|++++|+|+|++|++|+.||.|+||.
T Consensus       314 ~~~~~~~~l----~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          314 LKGSRVSIL----FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTCSEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCceEEEE----ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999988888    78999999999999999999999999999995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-55  Score=387.66  Aligned_cols=300  Identities=25%  Similarity=0.379  Sum_probs=273.2

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG  127 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  127 (388)
                      .+..|.|.. .....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|
T Consensus        90 ~~~~~~~~~-~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg  168 (410)
T 1vyh_C           90 DPKEWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC  168 (410)
T ss_dssp             --CCCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccccccCC-CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence            344555543 3456788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      +.|+.|++||+.+..       ....+.+|...|.+++|+|++ .++++|+.|+.|++||++++..+..+     .+|..
T Consensus       169 s~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~-----~~h~~  235 (410)
T 1vyh_C          169 SADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHRE  235 (410)
T ss_dssp             ETTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSS
T ss_pred             eCCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----eCCCc
Confidence            999999999998744       677788999999999999986 68999999999999999999998888     78999


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--------------------CCEEEE
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGT  267 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~  267 (388)
                      .|.++.++| ++.++++|+.||.|++||+++. .....+.+|...|.+++|+|+                    +.+|++
T Consensus       236 ~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          236 WVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            999999998 8899999999999999999887 778889999999999999996                    678999


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                      |+.|+.|++||++++..+..+..     +...|.+++|+|++++|++|+.||.|++||+.+++.+..+    .+|...|+
T Consensus       314 gs~D~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~----~~h~~~v~  384 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTGMCLMTLVG-----HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVT  384 (410)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEE
T ss_pred             EeCCCeEEEEECCCCceEEEEEC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----cCCCCcEE
Confidence            99999999999999988877754     3346999999999999999999999999999999888888    78999999


Q ss_pred             EEEECCCCCeEEEccCCCeEEEecc
Q 016522          348 CLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       348 ~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +++|+|++.+|++|+.||.|+||..
T Consensus       385 ~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          385 SLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-52  Score=354.28  Aligned_cols=292  Identities=18%  Similarity=0.293  Sum_probs=264.4

Q ss_pred             ceeeeccccccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      ....+.+++|.+.|++++|+|+    +.+|+||+.|++|++||+.+++.  ...+.+|...|.+++|++++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            4556788899999999999985    56899999999999999877654  34678899999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      +.|++||+.++.       ....+..|...+.+++|+|++ .++++++.||.|++||++++.....+     ..+...+.
T Consensus       102 ~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~~v~  168 (321)
T 3ow8_A          102 AHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSL-----DTRGKFIL  168 (321)
T ss_dssp             SEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEE-----ECSSSCEE
T ss_pred             CcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEe-----cCCCceEE
Confidence            999999998755       566778888899999999997 68999999999999999999888877     67888999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +++|+| ++++|++|+.||.|++||++++ +.+..+.+|..+|.+++|+|++++|++++.||.|++||++++.....+..
T Consensus       169 ~~~~sp-dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  246 (321)
T 3ow8_A          169 SIAYSP-DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG  246 (321)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             EEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence            999999 8899999999999999999987 78888999999999999999999999999999999999999888776643


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                           +...|.+++|+|++++|++++.|+.|++||+.+++.+..+    .+|.+.|.+++|+|++++|++++.||.|+||
T Consensus       247 -----h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          247 -----HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             -----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             -----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence                 4446999999999999999999999999999999999988    7899999999999999999999999999999


Q ss_pred             cc
Q 016522          371 LH  372 (388)
Q Consensus       371 ~~  372 (388)
                      +.
T Consensus       318 d~  319 (321)
T 3ow8_A          318 DC  319 (321)
T ss_dssp             EC
T ss_pred             eC
Confidence            85

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-51  Score=349.14  Aligned_cols=293  Identities=22%  Similarity=0.351  Sum_probs=260.0

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      +...++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      |+.++.       ....+.+|...|.+++|+|++ .++++|+.||.|++||++++.. ...+     .+|...|.+++|+
T Consensus        83 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~-----~~h~~~v~~v~~~  149 (304)
T 2ynn_A           83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN  149 (304)
T ss_dssp             ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEE-----CCCCSCEEEEEEC
T ss_pred             ECCCCc-------EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhh-----cccCCcEEEEEEC
Confidence            998865       677889999999999999996 6899999999999999998744 4455     6899999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      |.++.+|++|+.||.|++||++..........+|...+..+.|+|  ++.+|++++.|+.|++||+++++.+..+..+  
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--  227 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--  227 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--
Confidence            977899999999999999999887444445556778899999987  7789999999999999999999888877543  


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC--eEEEccCCCeEEEec
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKVSL  371 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~  371 (388)
                         ...|.+++|+|++++|++|+.||.|++||+.+++....+    ..|...+.+++|+|++.  ++++|+.|| +.+|.
T Consensus       228 ---~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~  299 (304)
T 2ynn_A          228 ---MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS  299 (304)
T ss_dssp             ---SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred             ---CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence               345999999999999999999999999999999999988    78889999999999875  577777666 45554


Q ss_pred             c
Q 016522          372 H  372 (388)
Q Consensus       372 ~  372 (388)
                      .
T Consensus       300 ~  300 (304)
T 2ynn_A          300 L  300 (304)
T ss_dssp             C
T ss_pred             e
Confidence            3

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-49  Score=337.14  Aligned_cols=297  Identities=22%  Similarity=0.398  Sum_probs=264.1

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ......++.+|.+.|++++|+|++++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++|+.||.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      ||+.++.       ....+.+|...|.+++|+|++ .++++|+.||.|++||+++++....+     ..|...|.+++|+
T Consensus        92 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~  158 (312)
T 4ery_A           92 WDVSSGK-------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTL-----PAHSDPVSAVHFN  158 (312)
T ss_dssp             EETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEC
T ss_pred             EECCCCc-------EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcEEEEEEc
Confidence            9998755       677888999999999999986 68999999999999999999988888     6889999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      | ++.++++++.||.|++||+++. +.+..+ ..+..++..++|+|++++|++++.||.|++||+++++....+..+...
T Consensus       159 ~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  236 (312)
T 4ery_A          159 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE  236 (312)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence            9 8889999999999999999987 444444 456678999999999999999999999999999999887776543322


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc--CCCeEEEecc
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS--WDTNLKVSLH  372 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~  372 (388)
                        ...+......+++.+|++|+.||.|++||+.+++.+..+    .+|...|.+++|+|++.+|++++  .|+.|++|..
T Consensus       237 --~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          237 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             --SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             --eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence              112333334467889999999999999999999999888    78999999999999999999987  6999999986


Q ss_pred             c
Q 016522          373 Y  373 (388)
Q Consensus       373 ~  373 (388)
                      .
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.5e-50  Score=340.40  Aligned_cols=297  Identities=25%  Similarity=0.334  Sum_probs=258.7

Q ss_pred             CCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCC-----CCeeeEeeeCCccEEEEEECCCCCEEEEee
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-----SQKTHAIKLPCAWVMTCAFSPTGQSVACGG  128 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  128 (388)
                      ..+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+..|...|.+++|+|++++|++|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            4567788999999999999999965 7999999999999999864     234667889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .|+.|++||+.++.       ....+.+|...|.+++|+|++ .++++|+.|+.|++||++. .....+     .+|...
T Consensus        85 ~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~~~~~~-----~~h~~~  150 (319)
T 3frx_A           85 WDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-QCLATL-----LGHNDW  150 (319)
T ss_dssp             TTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-CEEEEE-----CCCSSC
T ss_pred             CCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEE-----eccCCc
Confidence            99999999998865       667889999999999999986 6899999999999999974 455555     689999


Q ss_pred             eEEEEeeCC-----CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          209 VLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       209 i~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      +.++.+.|.     ++..+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999999983     2448999999999999999877 7778889999999999999999999999999999999999998


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC----CCCcCCCeeEEEECCCCCeEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----QNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      .+..+...      ..+.+++|+|++.++++++.+ .+++|++.....+..+...    ...|...+.+++|+|||++|+
T Consensus       230 ~~~~~~~~------~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  302 (319)
T 3frx_A          230 AMYTLSAQ------DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF  302 (319)
T ss_dssp             EEEEEECC------SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred             EEEEecCC------CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence            88776532      249999999999999988755 5999999888777665321    134567899999999999999


Q ss_pred             EccCCCeEEEeccc
Q 016522          360 TGSWDTNLKVSLHY  373 (388)
Q Consensus       360 s~~~dg~v~iw~~~  373 (388)
                      +|+.||.|+||+..
T Consensus       303 sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          303 AGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEETTSCEEEEEEE
T ss_pred             EeecCceEEEEEEe
Confidence            99999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-50  Score=346.25  Aligned_cols=309  Identities=21%  Similarity=0.281  Sum_probs=252.6

Q ss_pred             CceeeeccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE---eeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           56 DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        56 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      ...++.++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.....   ...|...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4567889999998 999999999999999999999999999987764322   256889999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEeecccccCCccC
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD  208 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~~~~  208 (388)
                      .+++|++....     ......+.+|...|.+++|+|++ .+|++|+.|+.|++||+.++..   ...+     ..|...
T Consensus        84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~~h~~~  152 (345)
T 3fm0_A           84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL-----NSHTQD  152 (345)
T ss_dssp             CEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE-----CCCCSC
T ss_pred             cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe-----cCcCCC
Confidence            99999987632     23567788999999999999986 7899999999999999987643   3344     689999


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee-
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-  286 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  286 (388)
                      |.+++|+| ++.+|++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+.|++||........ 
T Consensus       153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          153 VKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             EEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence            99999999 88899999999999999988652 2456788999999999999999999999999999999974322110 


Q ss_pred             ----------EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce--------EE-eeccCCCCCcCCCee
Q 016522          287 ----------VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------VV-LNLGSLQNSHEGRIT  347 (388)
Q Consensus       287 ----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~-~~~~~~~~~~~~~v~  347 (388)
                                .........+...|.+++|+|++..|++++.|+.|++|+.....        .. ...    .+|...|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~h~~~V~  307 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH----QAHSQDVN  307 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET----TSSSSCEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec----ccccCcEe
Confidence                      00000111245579999999999999999999999999986542        11 122    58999999


Q ss_pred             EEEECCCC-CeEEEccCCCeEEEeccceeeeecc
Q 016522          348 CLGLSADG-SALCTGSWDTNLKVSLHYYIFVLMP  380 (388)
Q Consensus       348 ~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~  380 (388)
                      +++|+|++ .+|++|+.||.|++|.......+.+
T Consensus       308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             EeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            99999987 4999999999999999876554433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-49  Score=338.77  Aligned_cols=291  Identities=18%  Similarity=0.193  Sum_probs=237.8

Q ss_pred             ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC-----------CCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-----------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      ..|...|.+++|+|||++|++++ |+++++||..           ..........+...|.+++|+|++ .|++|+.||.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            35777899999999999998887 6788888631           111122223455679999999985 6889999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |++||+.+++.   .........+|.+.|++++|+|++ .+|++|+.||.|++||+++++.+..+     .+|...|.++
T Consensus       105 v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~~  175 (344)
T 4gqb_B          105 VELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCV  175 (344)
T ss_dssp             EEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred             EEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCcCCceEEE
Confidence            99999987542   112234456899999999999997 68999999999999999999999988     7899999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +|+|.+..+|++++.||+|++||++++ +....+.  .|...+.+++|+| ++++|++|+.||.|++||+++++.+..+.
T Consensus       176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          176 AASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred             EecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence            999966679999999999999999987 5555543  4556799999999 56788999999999999999999888775


Q ss_pred             eccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEccCCCeE
Q 016522          290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNL  367 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v  367 (388)
                      .+     ...|++++|+|++ ++|++|+.|+.|++||+.+++... +    .+|.+.|++++|+|++. +|++|+.||+|
T Consensus       255 ~h-----~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          255 VH-----SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             CC-----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CC-----CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            43     3459999999998 589999999999999999988664 4    68999999999999886 56789999999


Q ss_pred             EEeccceee
Q 016522          368 KVSLHYYIF  376 (388)
Q Consensus       368 ~iw~~~~~~  376 (388)
                      ++|......
T Consensus       325 ~~w~v~~~~  333 (344)
T 4gqb_B          325 VHHVVPTEP  333 (344)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
Confidence            999976544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-49  Score=343.28  Aligned_cols=291  Identities=18%  Similarity=0.255  Sum_probs=240.3

Q ss_pred             ccccCCeeEEEeCCCCCeEEEEeC------CCcEEEEECCCCCee----eEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522           64 QGHAGKVYSLDWTSERNRIVSASQ------DGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSPTGQSVACGGLDSVC  133 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (388)
                      .+|.+.|++++|+|||++||+|+.      |+.|++|+..++...    .....|...|.+++|+|++.+ ++++.||.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence            569999999999999999999997      778999998776543    334568888999999999865 567789999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ++||+.+++..   ........+|...|.+++|+|++ .+|++|+.||.|++||+++++....+     ..|...|.+++
T Consensus       118 ~lWd~~~~~~~---~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~  188 (357)
T 4g56_B          118 ELWEILEKESL---LVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCVA  188 (357)
T ss_dssp             EEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEE
T ss_pred             EEeecccccee---EEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEEE
Confidence            99999875421   12234456899999999999997 68999999999999999999999888     78999999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEE--EecccCCeeEEEEccC-CCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      |+|.+..++++++.||.|++||++++ +....  ...|...+.+++|+|+ +.+|++|+.|+.|++||+++++....+..
T Consensus       189 ~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~  267 (357)
T 4g56_B          189 ACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV  267 (357)
T ss_dssp             ECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC
T ss_pred             EccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec
Confidence            99966678999999999999999887 44333  3456778999999996 56899999999999999999988877744


Q ss_pred             ccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEE
Q 016522          291 QHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLK  368 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~  368 (388)
                           +...|++++|+|++ ++|++|+.|+.|+|||+.+++.+..+     +|.+.|++++|+| ++.+|++|+.||.|+
T Consensus       268 -----~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          268 -----HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             -----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             -----cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence                 33459999999987 58999999999999999999887764     7999999999998 899999999999999


Q ss_pred             Eecccee
Q 016522          369 VSLHYYI  375 (388)
Q Consensus       369 iw~~~~~  375 (388)
                      +|+....
T Consensus       338 iW~~~~~  344 (357)
T 4g56_B          338 HHHLPSE  344 (357)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9997543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-49  Score=334.90  Aligned_cols=305  Identities=21%  Similarity=0.287  Sum_probs=239.2

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEe-ee-CCccEEEEEECCCCCEEEEeeCCC
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAI-KL-PCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      .++++++|.+|.++|.+++|+|+  +|++|+.|++|++||+.++.  ....+ .. |...|.+++|+|++++|++|+.|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            45678899999999999999988  99999999999999998753  34444 33 888999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC----ceEEEeecccccCCcc
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTA  207 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~~~~~  207 (388)
                      .|++|++...............+.+|...|.+++|+|++ .+|++|+.|+.|++||+...    +.+..+     ..|..
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~h~~  154 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QEHSQ  154 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CCCSS
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----ccCCC
Confidence            999999965322112234567788999999999999996 68999999999999999532    344555     68999


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCce
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      .|.+++|+| ++.+|++++.|++|++||..... .++..+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+..
T Consensus       155 ~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          155 DVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             ceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            999999999 88999999999999999987542 467788999999999999998  77899999999999999875421


Q ss_pred             ----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce--EEeeccCCCCCcCC-CeeEEEECC--CC
Q 016522          285 ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEG-RITCLGLSA--DG  355 (388)
Q Consensus       285 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~-~v~~~~~~~--~~  355 (388)
                          ...........+...|.+++|++++ +|++++.||.|++||..+++  ......   .+|.. .|.+++|+|  ++
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~h~~~~v~~v~~~~~~~~  309 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA---LCHGVYEINVVKWLELNGK  309 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES---CTTTTSCEEEEEEC-----
T ss_pred             cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc---cccccceEEEEEEecCCCc
Confidence                0011111111245579999999765 89999999999999998764  232221   46776 899999999  78


Q ss_pred             CeEEEccCCCeEEEeccc
Q 016522          356 SALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       356 ~~l~s~~~dg~v~iw~~~  373 (388)
                      ++|++|+.||.|+||+..
T Consensus       310 ~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          310 TILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             CCEEEEETTSEEEEEEC-
T ss_pred             eEEEEecCCCcEEEEEec
Confidence            999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-48  Score=336.07  Aligned_cols=300  Identities=20%  Similarity=0.286  Sum_probs=247.6

Q ss_pred             CceeeeccccccCCeeEEEe-----CC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCccEEEEEECCCCC
Q 016522           56 DLVCCRTLQGHAGKVYSLDW-----TS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ...+...|++|.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .....+..|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            45677899999999999999     76 8999999999999999998754       34566788999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      ++++|+.|+.|++||+.++.       ....+.+|...|.+++|+|++ .++++++.|+.|++||+.... ....  ...
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~-~~~~--~~~  158 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGEC-KFSS--AEK  158 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSC-------EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCE-EEEC--CTT
T ss_pred             EEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCc-eeee--ecc
Confidence            99999999999999998755       667888999999999999997 689999999999999998433 2222  111


Q ss_pred             cCCccCeEEEEeeCCC---------CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc
Q 016522          203 SGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  273 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (388)
                      ..|...+.+++|+|..         +.++++++.||.|++||..  ......+.+|...|.+++|+|++++|++|+.||.
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            3688899999999843         2789999999999999943  3567788899999999999999999999999999


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe--eccC-------CCCCcCC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-------LQNSHEG  344 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-------~~~~~~~  344 (388)
                      |++||+............     ...|.+++|+|++.+++++ .|+.|++||+.+++...  .+..       ...+|..
T Consensus       237 v~iwd~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (343)
T 2xzm_R          237 LLIWDILNLTYPQREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP  310 (343)
T ss_dssp             EEEEESSCCSSCSEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred             EEEEECCCCcccceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence            999999544332222211     1249999999999888755 67889999998765432  3311       0126888


Q ss_pred             CeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          345 RITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .|++++|+|+|++|++|+.||.|++|....
T Consensus       311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          311 QCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             ceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            999999999999999999999999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-48  Score=339.65  Aligned_cols=290  Identities=20%  Similarity=0.384  Sum_probs=246.5

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC------------------ccEEEEEECCCCCEEEE
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------------AWVMTCAFSPTGQSVAC  126 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~  126 (388)
                      +|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..+.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 6899999999999887775543                  24899999999999999


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  206 (388)
                      |+.|+.|++||+.++.       ....+.+|...|.+++|+|++ .++++++.|+.|++||+++++....+      .+.
T Consensus       141 ~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~  206 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL------SIE  206 (393)
T ss_dssp             EETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE------ECS
T ss_pred             EcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE------EcC
Confidence            9999999999998754       667789999999999999997 68999999999999999999887776      356


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-------ecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                      ..+.+++++|.++.++++|+.||.|++||++++ ..+..+       .+|...|.+++|+|++++|++++.||.|++||+
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            779999999978899999999999999999877 555554       578999999999999999999999999999999


Q ss_pred             CCCceeeEeee-------ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          280 RTGHQLQVYYQ-------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       280 ~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      ++.........       .....+...|.+++|+|++.+|++|+.|+.|++||..+++.+..+    .+|...|.+++|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l----~~h~~~v~~v~~~  361 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVISVAVA  361 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEC
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----CCCCCCEEEEEec
Confidence            86432211000       000134456999999999999999999999999999999998888    7899999999998


Q ss_pred             C------CCCeEEEccCCCeEEEeccce
Q 016522          353 A------DGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       353 ~------~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +      ++.+|++|+.||.|+||+...
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            6      688999999999999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-48  Score=361.53  Aligned_cols=323  Identities=17%  Similarity=0.238  Sum_probs=264.2

Q ss_pred             cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-------eCCccE
Q 016522           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-------LPCAWV  112 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v  112 (388)
                      ..+.+.+..+..|+..+.++..++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+.       .|...|
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence            3455667788899988889999999999999999999999999999999999999999999888874       689999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC------------------------------------CCCceeEEecc
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD------------------------------------GNLPVSRMLSG  156 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~------------------------------------~~~~~~~~~~~  156 (388)
                      .+++|+|++++|++++.|+.|++||+.++....                                    ........+.+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            999999999999999999999999998643110                                    00012345678


Q ss_pred             cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec-------------------------------c-----
Q 016522          157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-------------------------------E-----  200 (388)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------------------------------~-----  200 (388)
                      |...|.+++|+|++ .+|++++.|+.|++||+.++.....+..                               .     
T Consensus       323 h~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~  401 (611)
T 1nr0_A          323 HNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD  401 (611)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred             CCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence            99999999999987 6899999999999999987654332100                               0     


Q ss_pred             -----------------c------------------------ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          201 -----------------F------------------------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       201 -----------------~------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                                       +                        ...+...+.+++|+| +++++++|+.|+.|++||+...
T Consensus       402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~  480 (611)
T 1nr0_A          402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGA  480 (611)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETT
T ss_pred             ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCC
Confidence                             0                        001234578899999 8899999999999999999765


Q ss_pred             Cc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          240 SR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       240 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      .. .... .+|...|++++|+|++++|++++.|+.|++||+.+ ++......   ...|...|.+++|+|+|++|++|+.
T Consensus       481 ~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs~  556 (611)
T 1nr0_A          481 SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGSL  556 (611)
T ss_dssp             EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEEC
Confidence            22 1233 67999999999999999999999999999999987 44332211   1125567999999999999999999


Q ss_pred             CCcEEEEEcccce-EE-eeccCCCCCc-CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          318 NGDCYVWDTLLAK-VV-LNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       318 dg~i~i~d~~~~~-~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      |+.|++||+.++. .. ..+    .+| ...|++++|+|+++ |++|+.|++|++|+..
T Consensus       557 D~~v~lW~~~~~~~~~~~~~----~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          557 DNSVIVWNMNKPSDHPIIIK----GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TSCEEEEETTCTTSCCEEET----TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CCcEEEEECCCcccccchhh----ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            9999999998754 22 344    688 89999999999998 9999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-47  Score=324.77  Aligned_cols=302  Identities=25%  Similarity=0.375  Sum_probs=256.4

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEECCCCCEEE
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      ..+.++++..+|+||++.|++|+|+|+ +++|+||+.||+|+|||+.+.+     +...+..|...|.+++|+|++++|+
T Consensus        23 ~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             ---CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            445677788899999999999999997 5899999999999999987654     3566778999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +++.|+.|++|+.....       .......+...+..+.+.+++ .++++++.|+.+++||+..........    ..|
T Consensus       103 s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~  170 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD----ESH  170 (340)
T ss_dssp             EEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS----SSC
T ss_pred             EEcccccceEEeecccc-------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe----ccc
Confidence            99999999999998754       556666778888889999886 679999999999999998765544332    578


Q ss_pred             ccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          206 TADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       206 ~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      ...+..+++++.. ..++++++.|+.|++||++.. .....+.+|..+|++++|+|++++|++|+.||.|++||+++.+.
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence            8999999998743 457889999999999999987 78888999999999999999999999999999999999999988


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-----CCCCcCCCeeEEEECCCCCeEE
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      +..+...      ..+.+++|+|++.++ +++.|+.|++||+.++..+..+..     ....|...|++++|+|+|++|+
T Consensus       250 ~~~~~~~------~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          250 LYTLDGG------DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             EEEEECS------SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             eeeecCC------ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            8776542      248999999987655 555799999999998887766532     1246889999999999999999


Q ss_pred             EccCCCeEEEeccc
Q 016522          360 TGSWDTNLKVSLHY  373 (388)
Q Consensus       360 s~~~dg~v~iw~~~  373 (388)
                      +|+.||.|+||+..
T Consensus       323 sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          323 AGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEETTSCEEEEEEE
T ss_pred             EEeCCCEEEEEeCC
Confidence            99999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-47  Score=352.90  Aligned_cols=304  Identities=18%  Similarity=0.212  Sum_probs=264.8

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEE
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSV  124 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  124 (388)
                      ..+..|++.+......|.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++  ....+..|...|.+++|+|++++|
T Consensus        39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l  118 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI  118 (611)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence            456678888888889999999999999999999999999999999999987544  455678899999999999999999


Q ss_pred             EEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          125 ACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       125 ~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      ++++.+    +.|++||...         ....+.+|...|.+++|+|++...|++|+.|++|++||..+++....+   
T Consensus       119 ~~~~~~~~~~~~v~~wd~~~---------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l---  186 (611)
T 1nr0_A          119 AAVGEGRERFGHVFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---  186 (611)
T ss_dssp             EEEECCSSCSEEEEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---
T ss_pred             EEEECCCCceeEEEEeeCCC---------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee---
Confidence            998865    4688887543         345678999999999999997667999999999999999988888877   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-------cccCCeeEEEEccCCCEEEEeeCCCc
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGSDDGT  273 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~  273 (388)
                        .+|...|.+++|+| ++++|++++.|++|++||+.++ .....+.       +|.+.|.+++|+|++++|++++.|++
T Consensus       187 --~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~  262 (611)
T 1nr0_A          187 --GEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT  262 (611)
T ss_dssp             --CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             --ccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence              78999999999999 8899999999999999999877 5666663       79999999999999999999999999


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      |++||+.+++....+....  ........+.|  ++..+++++.|+.+++||...++....+    .+|...|++++|+|
T Consensus       263 v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~gh~~~v~~l~~sp  334 (611)
T 1nr0_A          263 IKIWNVATLKVEKTIPVGT--RIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVR----YGHNKAITALSSSA  334 (611)
T ss_dssp             EEEEETTTTEEEEEEECCS--SGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEE----CCCSSCEEEEEECT
T ss_pred             EEEEeCCCCceeeeecCCC--CccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEE----cCCCCCEEEEEEeC
Confidence            9999999998887765432  12223556666  6789999999999999999998877777    78999999999999


Q ss_pred             CCCeEEEccCCCeEEEeccce
Q 016522          354 DGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       354 ~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +|++|++++.||.|++|+...
T Consensus       335 dg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          335 DGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEeCCCcEEEEECCC
Confidence            999999999999999998653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-46  Score=343.92  Aligned_cols=298  Identities=27%  Similarity=0.468  Sum_probs=263.4

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      .+.+.....|+. +.+....+.+|.+.|.+++|+|++++|++++.||+|++||.. +..+..+..|...+.+++|+|+++
T Consensus       280 ~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~  357 (577)
T 2ymu_A          280 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQ  357 (577)
T ss_dssp             EETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCC
Confidence            345566677775 456778899999999999999999999999999999999965 556677888999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      ++++++.||.|++|+...        .....+.+|...|.+++|+|++ .+|++++.|+.|++||. +++....+     
T Consensus       358 ~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~-----  422 (577)
T 2ymu_A          358 TIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----  422 (577)
T ss_dssp             EEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEE-----
T ss_pred             EEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEe-----
Confidence            999999999999999643        2567788999999999999997 67999999999999996 45666666     


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ..|...|++++|+| ++.+|++++.|+.|++||..  .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus       423 ~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~  498 (577)
T 2ymu_A          423 TGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  498 (577)
T ss_dssp             ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred             cCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence            68999999999999 88899999999999999974  3678888999999999999999999999999999999995 56


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      +.+..+..     +...|++++|+|+|++|++++.||.|++||. +++.+..+    .+|.+.|++++|+|||++|+|++
T Consensus       499 ~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          499 QLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             CEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEeC-----CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcCCCCEEEEEe
Confidence            77766644     3446999999999999999999999999996 67777777    78999999999999999999999


Q ss_pred             CCCeEEEec
Q 016522          363 WDTNLKVSL  371 (388)
Q Consensus       363 ~dg~v~iw~  371 (388)
                      .|+.|++|+
T Consensus       569 ~D~~i~~Wd  577 (577)
T 2ymu_A          569 SDKTVKLWN  577 (577)
T ss_dssp             TTSCEEEEC
T ss_pred             CCCEEEEeC
Confidence            999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.5e-47  Score=334.00  Aligned_cols=266  Identities=21%  Similarity=0.327  Sum_probs=244.4

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      +.+.+..+..|+....+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++
T Consensus       125 s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~  204 (410)
T 1vyh_C          125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG  204 (410)
T ss_dssp             EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence            33456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ++|++|+.|+.|++||+.++.       ....+.+|...|.++.++|++ .++++|+.||.|++||+.++.....+    
T Consensus       205 ~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~----  272 (410)
T 1vyh_C          205 DHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL----  272 (410)
T ss_dssp             SEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred             CEEEEEeCCCeEEEEECCCCc-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEe----
Confidence            999999999999999998755       677888999999999999986 78999999999999999999988888    


Q ss_pred             ccCCccCeEEEEeeCCC-------------------CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          202 QSGHTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                       ..|...|.+++|+|..                   +.++++|+.||.|++||++++ ..+..+.+|...|.+++|+|++
T Consensus       273 -~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g  350 (410)
T 1vyh_C          273 -REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGG  350 (410)
T ss_dssp             -CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSS
T ss_pred             -cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCC
Confidence             7899999999999842                   568999999999999999987 7888999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      ++|++|+.||.|++||+.+++.+..+..+     ...|++++|+|++.+|++|+.||.|++|++
T Consensus       351 ~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          351 KFILSCADDKTLRVWDYKNKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SCEEEEETTTEEEEECCTTSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcCC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999999999998888777543     345999999999999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-46  Score=321.81  Aligned_cols=299  Identities=14%  Similarity=0.211  Sum_probs=262.9

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      .......|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeec------ccccC
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGG------EFQSG  204 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~------~~~~~  204 (388)
                      ||+.++.       ....+. +...+.+++|+|++ .++++++.+     |.|.+||+........+..      .....
T Consensus       101 wd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  171 (369)
T 3zwl_B          101 WDVSNGQ-------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT  171 (369)
T ss_dssp             EETTTCC-------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred             EECCCCc-------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence            9998754       444444 88899999999997 678899888     9999999987642211100      00023


Q ss_pred             Ccc--CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          205 HTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       205 ~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      +..  .+.+++|+| +++++++++.||.|++||++.....+..+..|...|.+++|+|++++|++++.||.|++||++++
T Consensus       172 ~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          172 HEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             CTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            444  899999999 88899999999999999999855788889999999999999999999999999999999999999


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC--------------cEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      +....+..      ...+..++|+|+++++++++.++              .+++||..+++.+..+    .+|...|++
T Consensus       251 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~  320 (369)
T 3zwl_B          251 QVLKKYET------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNT  320 (369)
T ss_dssp             CEEEEEEC------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEE
T ss_pred             ceeeeecC------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEE
Confidence            88877752      23589999999999999999988              8999999999999888    789999999


Q ss_pred             EEECCCCCeEEEccCCCeEEEeccce
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++|+|++++|++++.||.|++|+...
T Consensus       321 ~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          321 VAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECcc
Confidence            99999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.4e-46  Score=348.48  Aligned_cols=299  Identities=26%  Similarity=0.351  Sum_probs=252.4

Q ss_pred             ceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      ++....+++|++.|++++|+|++ ++|+||+.||+|++||+.+..     ....+..|...|.+++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            45567899999999999999865 799999999999999987643     456788999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      |.|++||+.++.       ....+.+|...|.+++|+|++ .++++++.|++|++||...........  ....|...|.
T Consensus       452 g~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~  521 (694)
T 3dm0_A          452 GELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS  521 (694)
T ss_dssp             SEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred             CcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence            999999998754       567788999999999999987 679999999999999987654433321  1246888999


Q ss_pred             EEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          211 SVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       211 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +++|+|.. ...+++++.|+.|++||++.. .....+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            99999943 368999999999999999987 7788899999999999999999999999999999999999998776553


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC---------------CcCCCeeEEEECCC
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------------SHEGRITCLGLSAD  354 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~  354 (388)
                      .      ...+.+++|+|++.++++++ ++.|++||+.+++.+..+.....               .+...+++++|+|+
T Consensus       601 ~------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd  673 (694)
T 3dm0_A          601 A------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD  673 (694)
T ss_dssp             C------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred             C------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence            2      23599999999999888775 55699999999988876632110               11124789999999


Q ss_pred             CCeEEEccCCCeEEEeccc
Q 016522          355 GSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       355 ~~~l~s~~~dg~v~iw~~~  373 (388)
                      |++|++|+.||.|+||...
T Consensus       674 g~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          674 GSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SSEEEEEETTSEEEEEEC-
T ss_pred             CCEEEEEcCCCeEEEEecc
Confidence            9999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.7e-45  Score=311.76  Aligned_cols=296  Identities=18%  Similarity=0.325  Sum_probs=254.4

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEee--eCCccEEEEEECCCCCEEEE
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIK--LPCAWVMTCAFSPTGQSVAC  126 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~  126 (388)
                      |............+|.+.|++++|+|++++|++++ ||.|++||+.+++..   ..+.  .|...|.+++|+|++++|++
T Consensus        36 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  114 (337)
T 1gxr_A           36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV  114 (337)
T ss_dssp             TTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEE
T ss_pred             cccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEE
Confidence            33333333344457999999999999999999999 999999999876643   3333  68889999999999999999


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT  206 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  206 (388)
                      ++.||.|++|++.++.     ......+..|...|.+++|+|++ .++++++.||.|++||+++++....+     ..|.
T Consensus       115 ~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~  183 (337)
T 1gxr_A          115 GGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHT  183 (337)
T ss_dssp             EESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCS
T ss_pred             EcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeee-----eccc
Confidence            9999999999998743     22456678899999999999986 68999999999999999999888887     6789


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (388)
                      ..+.+++|+| +++++++++.||.|++||++.. ..+..+ .+...+.+++|+|++++|++++.|+.|++||+++++...
T Consensus       184 ~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          184 DGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             CceEEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence            9999999999 8899999999999999999977 555554 478889999999999999999999999999999876543


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                       +     ..+...+.+++|+|++++|++++.||.|++||+.+++.+...     .|...|.+++|+|++++|++++.||.
T Consensus       261 -~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          261 -L-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             -E-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             -E-----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-----cCCCcEEEEEECCCCCEEEEecCCCe
Confidence             2     224456999999999999999999999999999998887554     57889999999999999999999999


Q ss_pred             EEEeccc
Q 016522          367 LKVSLHY  373 (388)
Q Consensus       367 v~iw~~~  373 (388)
                      |++|+..
T Consensus       330 i~iw~~~  336 (337)
T 1gxr_A          330 ATVYEVI  336 (337)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.7e-46  Score=326.10  Aligned_cols=309  Identities=17%  Similarity=0.234  Sum_probs=258.5

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC------eeeEeeeCCccEEEEEECCC----C---CE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPT----G---QS  123 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~  123 (388)
                      ......+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++      ....+..|...|.+++|+|+    +   ++
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            456778999999999999999  799999999999999999988      78888999999999999999    9   99


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-----ccceEEEEEE----eCCCce-EEEeeCCCeEEEEecCC---
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LITSSGDQTCVLWDITT---  190 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~v~i~d~~~---  190 (388)
                      |++++.||.|++|++.++...  .......+..|     ...|.+++|+    |++ .+ +++++.||.|++||+.+   
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccc
Confidence            999999999999999875421  11125667778     5999999999    886 57 99999999999999998   


Q ss_pred             ---CceEE-----Eeec--ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---c---cCCee
Q 016522          191 ---GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---H---EGDVN  254 (388)
Q Consensus       191 ---~~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~i~  254 (388)
                         +..+.     .+..  .....|...+.+++|+| ++ ++++++.||.|++||++.. ..+..+..   |   ...|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccc
Confidence               55444     3310  01134788999999999 66 9999999999999999987 78888888   8   99999


Q ss_pred             EEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCC--------CCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          255 TVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGE--------NEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      +++|+|++++|++++.|   |.|++||+++++.+..+......        .+...|.+++|+|++++|++++.||.|++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            99999999999999999   99999999999888777541000        04456999999999999999999999999


Q ss_pred             EEcccceEEeeccCCC--CCc---------------CCCeeEEEECCCC----------CeEEEccCCCeEEEeccc
Q 016522          324 WDTLLAKVVLNLGSLQ--NSH---------------EGRITCLGLSADG----------SALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~--~~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~v~iw~~~  373 (388)
                      ||+.+++.+..+....  ..|               ...|++++|+|++          ++|++|+.||.|++|+..
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            9999999988883100  056               8999999999998          799999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=312.55  Aligned_cols=267  Identities=22%  Similarity=0.314  Sum_probs=243.3

Q ss_pred             ccccCCCCCcccCCCCc--eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522           41 YSRSQGRAPVSFGPTDL--VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  118 (388)
                      .+++.+..+..|+....  .....+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..+...+.+++|+
T Consensus        52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s  131 (321)
T 3ow8_A           52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS  131 (321)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC
T ss_pred             EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC
Confidence            45567788888986544  4456799999999999999999999999999999999999999999999998899999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      |++++|++|+.||.|++|++..+.       ....+..|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+ 
T Consensus       132 pdg~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~-  202 (321)
T 3ow8_A          132 PDSQYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTL-  202 (321)
T ss_dssp             TTSSEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             CCCCEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE-
Confidence            999999999999999999998755       556677888999999999997 78999999999999999999988888 


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                          ..|...|.+++|+| ++.+|++|+.||.|++||++.. .....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus       203 ----~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          203 ----EGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD  276 (321)
T ss_dssp             ----CCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ----cccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence                78999999999999 8899999999999999999987 77888999999999999999999999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +++++++..+..     +...|.+++|+|++++|++++.||.|++||..
T Consensus       277 ~~~~~~~~~~~~-----h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          277 VGTRTCVHTFFD-----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCEEEEEEcC-----CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999998888754     34469999999999999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-45  Score=322.81  Aligned_cols=302  Identities=16%  Similarity=0.228  Sum_probs=252.5

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEEC----CCCC------eeeEeee----------CC
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNA----LTSQ------KTHAIKL----------PC  109 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~----~~~~------~~~~~~~----------~~  109 (388)
                      .|+............|.++|++++|+|+++ +|++|+.||.|++||+    .+++      ....+..          |.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (425)
T 1r5m_A           29 SDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT  108 (425)
T ss_dssp             -----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C
T ss_pred             cccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC
Confidence            344444444444455779999999999999 9999999999999999    8888      4555554          57


Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..|.+++|+|++++|++++.||.|++|+...        .....+..|...|.+++|+|++ .++++++.||.|++||+.
T Consensus       109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVI  179 (425)
T ss_dssp             BCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETT
T ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECC
Confidence            7899999999999999999999999999332        2567788999999999999986 689999999999999998


Q ss_pred             CCceEEEeeccc---------------------------------------------------ccCCccCeEEEEeeCCC
Q 016522          190 TGLRTSVFGGEF---------------------------------------------------QSGHTADVLSVSISGSN  218 (388)
Q Consensus       190 ~~~~~~~~~~~~---------------------------------------------------~~~~~~~i~~~~~~~~~  218 (388)
                      +++....+....                                                   ...|...|.+++|+| +
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-T  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-T
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-C
Confidence            887655442211                                                   135778899999999 7


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                      +.+|++++.||.|++||++.. .....+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+....     .
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~  331 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG-----V  331 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC-----c
Confidence            889999999999999999987 7788888899999999999999 99999999999999999998887775433     3


Q ss_pred             CeEEEEecCCCCEEEEEecCCcEEEEEcccce--------------------EEeeccCCCCCcCC--CeeEEEECCCCC
Q 016522          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGS  356 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~~~~~  356 (388)
                      .+.+++|+|++++|++++.||.|++||+.+++                    .+..+    ..|..  .|++++|+|+++
T Consensus       332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSS
T ss_pred             cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCc
Confidence            59999999999999999999999999999888                    77777    67766  999999999999


Q ss_pred             eEEEccCCCeEEEeccc
Q 016522          357 ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~  373 (388)
                      +|++++.||.|++|+..
T Consensus       408 ~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          408 KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEEESSSCCEEEECC
T ss_pred             eEEEEecCceEEEEeec
Confidence            99999999999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-45  Score=320.92  Aligned_cols=298  Identities=17%  Similarity=0.239  Sum_probs=248.3

Q ss_pred             CCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECC-CCCEEEEeeCC
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSP-TGQSVACGGLD  130 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d  130 (388)
                      ...+..+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  .|...|.+++|+| ++.+|++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            4567788999999999999999999 899999999999999999888877776  5889999999999 78999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      +.|++||+...        ....+   ..|...|.+++|+|++ .++++++.||.|++||+ ++.....+     ..|..
T Consensus       141 ~~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~-----~~h~~  205 (383)
T 3ei3_B          141 GATTLRDFSGS--------VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKE-----KLHKA  205 (383)
T ss_dssp             TEEEEEETTSC--------EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEE-----ECSSS
T ss_pred             CEEEEEECCCC--------ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEe-----ccCCC
Confidence            99999999852        23333   3445889999999987 68999999999999999 46666666     68999


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC---cceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCc
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      .|.+++|+|.+..++++++.|+.|++||++...   ..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            999999999444499999999999999998732   344444 6999999999999 99999999999999999999988


Q ss_pred             eeeEeeeccCC--CCC----------CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522          284 QLQVYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       284 ~~~~~~~~~~~--~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (388)
                      ....+......  .+.          ..+..++|+|++++  +|+.||.|++||+.+++.+..+..  ..|...+.+++|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--~~~~~~~~~~~~  360 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD--PNAAGIISLNKF  360 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB--TTBCSCCCEEEE
T ss_pred             cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC--CCCCceEEEEEE
Confidence            77666532211  111          23445667777766  777899999999999999888831  125678888899


Q ss_pred             CCCCCeEEEccCCCeEEEeccc
Q 016522          352 SADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       352 ~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +|++++|++|+ ||.|+||+..
T Consensus       361 s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          361 SPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             CTTSSEEEEEE-TTEEEEEECC
T ss_pred             ecCccEEEEec-CCcEEEEecC
Confidence            99999999997 9999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-44  Score=307.70  Aligned_cols=289  Identities=21%  Similarity=0.336  Sum_probs=256.6

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ..++.+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            45788999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      |++.....    ......+.+|...|.++.|.   +.++++++.||.|++||  .+.....+     ..|...+.++++.
T Consensus        86 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~-----~~~~~~v~~~~~~  151 (313)
T 3odt_A           86 VPLFATSG----EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNL-----QAHNASVWDAKVV  151 (313)
T ss_dssp             EETTCCTT----SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEE-----ECCSSCEEEEEEE
T ss_pred             EEeeecCC----CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEec-----ccCCCceeEEEEc
Confidence            99987432    22456678899999999993   35899999999999999  56666666     6889999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  294 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  294 (388)
                      |.+++++++++.||.|++||..   .....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..+   
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~---  224 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH---  224 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred             cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC---
Confidence            8788999999999999999943   56666776 899999999999988 999999999999999999888877543   


Q ss_pred             CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                        ...+++++|+|++ .|++++.||.|++||+.+++....+    ..|...|.+++|+|+++ +++++.||.|++|+...
T Consensus       225 --~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          225 --ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             --SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             --CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence              3459999999999 5889999999999999999998888    68889999999999998 66799999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-46  Score=331.01  Aligned_cols=325  Identities=14%  Similarity=0.144  Sum_probs=268.4

Q ss_pred             cCCCCCcccCCCCce---eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEE
Q 016522           44 SQGRAPVSFGPTDLV---CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCA  116 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~  116 (388)
                      +.+.....|+.....   +...+ .|...|++++|+|++++|++|+.||.|++||+.+    .+....+..|...|.+++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            456778889887664   34444 5899999999999999999999999999999987    457888889999999999


Q ss_pred             ECCC-CCEEEEeeCCCcEEEEeCCCCCCCCC--CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522          117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      |+|+ +.+|++++.||.|++||+........  ..........|...|.+++|+|++..++++++.||.|++||+++++.
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            9998 89999999999999999987542111  01112234678999999999999668999999999999999999988


Q ss_pred             EEEeeccc-ccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEe-cccCCeeEEEEcc-CCCEEEE
Q 016522          194 TSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNRFGT  267 (388)
Q Consensus       194 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~  267 (388)
                      ...+.... ..+|...+.+++|+|.+..++++++.|+   .|++||++....+...+. +|...|.+++|+| ++++|++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence            88773110 0112788999999995568999999998   999999998756777787 8999999999999 9999999


Q ss_pred             eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeecc----------
Q 016522          268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG----------  336 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------  336 (388)
                      ++.||.|++||+++++.+..+..+     ...|.+++|+|++ .+|++++.||.|++||+.+........          
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  355 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPAR-----GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE  355 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEECS-----SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred             EeCCCCEEEeeCCCCccceeecCC-----CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence            999999999999999888877543     3459999999999 799999999999999998765322210          


Q ss_pred             ---------------------CCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          337 ---------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       337 ---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                                           .....|..++.+++|+|+|++|++|+.||.|+||....
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                                 00112677888999999999999999999999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-44  Score=331.00  Aligned_cols=300  Identities=26%  Similarity=0.437  Sum_probs=265.2

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ...+.....|+. ..+.+..+.+|...|.+++|+|+++.|++++.|+.|++||. +++....+..|...|.+++|+|+++
T Consensus       239 ~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~  316 (577)
T 2ymu_A          239 ASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ  316 (577)
T ss_dssp             EETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCC
Confidence            345666777875 45778889999999999999999999999999999999995 5677888899999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      .+++++.|+.|++|+....        ....+.+|...|.+++|+|++ .++++++.||.|++||. +++....+     
T Consensus       317 ~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~-----  381 (577)
T 2ymu_A          317 TIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----  381 (577)
T ss_dssp             EEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEE-----
T ss_pred             EEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEe-----
Confidence            9999999999999998652        356678899999999999997 68999999999999996 55666666     


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ..|...|.+++|+| ++++|++++.|+.|++||..  .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.. +
T Consensus       382 ~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~  457 (577)
T 2ymu_A          382 TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-G  457 (577)
T ss_dssp             ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-S
T ss_pred             cCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-C
Confidence            68899999999999 88999999999999999964  36788899999999999999999999999999999999964 5


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      +.+..+..     +...|.+++|+|++++|++++.|+.|++||. +++.+..+    .+|...|++++|+|+|++|++++
T Consensus       458 ~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          458 QLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             CEEEEEEC-----CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcCCCCEEEEEE
Confidence            55555543     3346999999999999999999999999995 67777777    78999999999999999999999


Q ss_pred             CCCeEEEeccc
Q 016522          363 WDTNLKVSLHY  373 (388)
Q Consensus       363 ~dg~v~iw~~~  373 (388)
                      .||.|++|+..
T Consensus       528 ~dg~v~lwd~~  538 (577)
T 2ymu_A          528 DDKTVKLWNRN  538 (577)
T ss_dssp             TTSEEEEECTT
T ss_pred             CcCEEEEEeCC
Confidence            99999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-44  Score=305.34  Aligned_cols=253  Identities=19%  Similarity=0.247  Sum_probs=228.3

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +...++..|...|.+++|+|++++|++|+.||.|++||+.++.       ....+..|..+|.+++|+|++ +++++|+.
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~   75 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARK-NWIIVGSD   75 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence            4567788999999999999999999999999999999998754       567788999999999999996 78999999


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                      |+.|++||+.+++.+..+     ..|...|.+++|+| ++.+|++|+.||+|++||++........+.+|...|.+++|+
T Consensus        76 d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence            999999999999998888     78999999999999 888999999999999999987756677889999999999999


Q ss_pred             c-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC--CCCEEEEEecCCcEEEEEcccceEEeecc
Q 016522          260 P-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (388)
                      | ++.+|++|+.|+.|++||++++.....+...+    ...+..+.|+|  ++.+|++|+.|+.|++||+.+++.+..+ 
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-  224 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-  224 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC----TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCC----cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-
Confidence            9 67899999999999999998877666554322    23588888876  6789999999999999999999999998 


Q ss_pred             CCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                         .+|...|.+++|+|++.+|++|+.||.|++|+...
T Consensus       225 ---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          225 ---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             ---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             ---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence               79999999999999999999999999999999653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-44  Score=310.20  Aligned_cols=263  Identities=20%  Similarity=0.365  Sum_probs=233.4

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC----eeeEeeeCCccEEEEEE
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAF  117 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~  117 (388)
                      +.+.+..+..|+....+....+..|...|.+++|+|++++|++|+.|+.|++||+.+++    ....+..|...|.++.|
T Consensus        72 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~  151 (340)
T 1got_B           72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred             EEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence            34556778889988899999999999999999999999999999999999999998753    45567789999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  197 (388)
                      ++++. +++++.|+.|++||+.++.       ....+.+|.+.|.+++|+|++ .++++|+.||.|++||++++.....+
T Consensus       152 ~~~~~-l~s~s~d~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~  222 (340)
T 1got_B          152 LDDNQ-IVTSSGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             EETTE-EEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CCCCc-EEEEECCCcEEEEECCCCc-------EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEE
Confidence            98875 8899999999999998755       667788999999999999986 68999999999999999999988888


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                           ..|...|.+++|+| ++++|++|+.||.|++||++.. ..+..+..  +...|.+++|+|++++|++|+.||.|+
T Consensus       223 -----~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~  295 (340)
T 1got_B          223 -----TGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             -----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -----cCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence                 78999999999999 8899999999999999999876 45555442  334799999999999999999999999


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +||+.+++....+..     |...|.+++|+|+|.+|++|+.||.|++||
T Consensus       296 vwd~~~~~~~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          296 VWDALKADRAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTTCCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcccCcEeeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999888877754     344699999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=310.28  Aligned_cols=249  Identities=20%  Similarity=0.242  Sum_probs=214.3

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe----eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.....    ..|...|++++|+|+|++|++|+.|+.|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            467789999999985 7889999999999999998865543    47899999999999999999999999999999988


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      +.       ....+.+|.+.|.+++|++++..++++++.||.|++||+++++....+..   ..+...+.+++|+|.+++
T Consensus       159 ~~-------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~  228 (344)
T 4gqb_B          159 QV-------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQSE  228 (344)
T ss_dssp             TE-------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTT
T ss_pred             Cc-------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceeeccceeeeecCCCCc
Confidence            65       67888999999999999999878899999999999999999988777632   345567899999998888


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      +|++|+.||.|++||+++. +.+..+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++... +     ..|...
T Consensus       229 ~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----~~H~~~  301 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----QAHRDF  301 (344)
T ss_dssp             EEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----CCCSSC
T ss_pred             ceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----cCCCCC
Confidence            9999999999999999987 7889999999999999999987 579999999999999999886543 2     235567


Q ss_pred             eEEEEecCCCC-EEEEEecCCcEEEEEcccceE
Q 016522          300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      |++++|+|+++ +|++++.||+|++|++.+...
T Consensus       302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            99999999987 677899999999999976543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-44  Score=315.34  Aligned_cols=298  Identities=17%  Similarity=0.241  Sum_probs=251.0

Q ss_pred             cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS  140 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~  140 (388)
                      +..|.++|++++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44599999999999999999999999999999999887  8888899999999999999999999999999999999976


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      +.     ......+..|...|.+++|+|++ .++++++.||.|++||+..+....... .....|...|.+++|+| +++
T Consensus        84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~  155 (372)
T 1k8k_C           84 RT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWHP-NSV  155 (372)
T ss_dssp             TE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCCSCEEEEEECT-TSS
T ss_pred             Ce-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeee-eeecccCCCeeEEEEcC-CCC
Confidence            43     12234456789999999999986 789999999999999999876322111 11157889999999999 888


Q ss_pred             EEEEeeCCCceEEEECCC-----------------CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          221 MFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ++++++.||.|++||++.                 ....+..+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            999999999999999641                 226777888899999999999999999999999999999999999


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc--ceEEe--ec------------------------
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVL--NL------------------------  335 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~~------------------------  335 (388)
                      .+..+...     ...+.+++|+|++.++++| .|+.|++|++..  ++...  .+                        
T Consensus       236 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
T 1k8k_C          236 AVATLASE-----TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA  309 (372)
T ss_dssp             EEEEEECS-----SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred             eeEEEccC-----CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence            88877543     3359999999999988888 999999999987  43110  00                        


Q ss_pred             ---------cCCCCCcCCCeeEEEEC-CCC---CeEEEccCCCeEEEeccce
Q 016522          336 ---------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       336 ---------~~~~~~~~~~v~~~~~~-~~~---~~l~s~~~dg~v~iw~~~~  374 (388)
                               .....+|...|++++|. ++|   .+|++|+.||.|++|+...
T Consensus       310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                     11224899999999976 676   9999999999999999754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-44  Score=313.41  Aligned_cols=296  Identities=19%  Similarity=0.302  Sum_probs=245.2

Q ss_pred             Cceeee-ccccccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeee-----CCccEEEEEECCC----C
Q 016522           56 DLVCCR-TLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTCAFSPT----G  121 (388)
Q Consensus        56 ~~~~~~-~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~  121 (388)
                      ..++.. ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..     +...|.+++|+|+    +
T Consensus         6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A            6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            344433 44589999999999984    45677777788999999998887776654     4477999999998    6


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      .+|++|+.||.|++||+.++.       ....+.+|...|.+++|+|+++.++++++.||.|++||+++++....+... 
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-  157 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-  157 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-
T ss_pred             CEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-
Confidence            799999999999999998754       667788999999999999944578999999999999999999887776211 


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE----------------------------EEecccCCe
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----------------------------TFHGHEGDV  253 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~~i  253 (388)
                       ..|...|.+++|+| ++.+|++++.||.|++||++.. ....                            ....|...|
T Consensus       158 -~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          158 -EGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             -TSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             -ccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence             36889999999999 8899999999999999999865 3322                            223389999


Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEECCCCce--------------eeEeeeccCCCCCCCeEEEEecCC--CCEEEEEec
Q 016522          254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYS  317 (388)
Q Consensus       254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~  317 (388)
                      .+++|+  +++|++++.||.|++||++++..              +..+.     .+...+.+++|+|+  +++|++|+.
T Consensus       235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-----YSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-----CSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-----ccCCcEEEEEEcCCCCCcEEEEEec
Confidence            999998  77999999999999999988654              33332     23345899999999  999999999


Q ss_pred             CCcEEEEEcccce----EEeeccCCCCCc--CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          318 NGDCYVWDTLLAK----VVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       318 dg~i~i~d~~~~~----~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ||.|++||+.+++    ....+    ..|  ...|++++|+|++++|++|+.||.|++|+..
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTL----THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEE----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEECCCCCCccccceEE----cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999998865    33344    455  7999999999999999999999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7e-44  Score=314.24  Aligned_cols=309  Identities=19%  Similarity=0.257  Sum_probs=257.0

Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEee-------------eCCccEEEE
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIK-------------LPCAWVMTC  115 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~v~~~  115 (388)
                      ..|+....+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.             .|...|.++
T Consensus        26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             HHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred             eeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence            3455555666778889999999999999 99999999999999999999887765554             488899999


Q ss_pred             EECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC--ceEEEeeCCCeEEEEecCCCc
Q 016522          116 AFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       116 ~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +|+| ++.+|++++.||.|++||+.++.       ....+ .+...+.++.+.+.+.  .++++++.||.|++||++++.
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQ-------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCc-------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            9999 77899999999999999998754       33333 3678899999998642  389999999999999999998


Q ss_pred             eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---------------ecccCCeeEEE
Q 016522          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------------HGHEGDVNTVK  257 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~i~~~~  257 (388)
                      ....+     ..|...|.+++|+|.+..++++++.||.|++||++........+               ..|...|.+++
T Consensus       178 ~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          178 CSHIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             CCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             eeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            88887     68999999999999555579999999999999998875555555               57889999999


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      |+|++++|++++.||.|++||+.+++................+........+..+++++.++.|++||+.+++.+..+  
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--  330 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--  330 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--
Confidence            999999999999999999999999877655433222222222333333344556777788999999999999999998  


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                        .+|...|++++|+|++++|++|+.||.|++|+....
T Consensus       331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence              789999999999999999999999999999997653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-45  Score=323.12  Aligned_cols=310  Identities=14%  Similarity=0.187  Sum_probs=246.2

Q ss_pred             ccCCCCceeeecc-ccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC---CC---eeeEeeeCCccEEEEEECCCCC
Q 016522           51 SFGPTDLVCCRTL-QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT---SQ---KTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        51 ~~~~~~~~~~~~l-~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      .|++. .+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+|+++
T Consensus        47 ~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred             ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence            47744 4667777 99999999999999 999999999999999999876   43   22232 4889999999999999


Q ss_pred             EEEEeeCCCcEEEEeCC---CCCCCC-CCCceeEEe--cc--cccceEEEEE--EeCCCceEEEeeCCCeEEEEecCCCc
Q 016522          123 SVACGGLDSVCSIFNLN---SPTDKD-GNLPVSRML--SG--HKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~---~~~~~~-~~~~~~~~~--~~--~~~~v~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +|++|+.||.|++||++   .+.... ........+  ..  +...+.++.+  ++++ .++++++.||.|++||+++++
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe
Confidence            99999999999999995   221000 000011111  11  4566777774  3554 689999999999999999999


Q ss_pred             eEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEcc----CCCEE
Q 016522          193 RTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFP----DGNRF  265 (388)
Q Consensus       193 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l  265 (388)
                      ....+     ..  |...|++++|+| ++.+|++|+.||.|++||++.. ..+..+. .|..+|.+++|+|    ++.+|
T Consensus       204 ~~~~~-----~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l  276 (437)
T 3gre_A          204 RLQII-----ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIV  276 (437)
T ss_dssp             EEEEE-----ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred             eeEEE-----ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEE
Confidence            98888     44  789999999999 7899999999999999999986 7777775 7888999996654    67899


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccC---------------------CCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                      ++++.||.|++||+++++....+.....                     ..+...|++++|+ ++++|++|+.||.|++|
T Consensus       277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF  355 (437)
T ss_dssp             EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence            9999999999999999988877763311                     1145568999999 77999999999999999


Q ss_pred             EcccceEEeeccCC---------------------------------CCCcCCCeeEEEECCC--CCeEEEccCCCeEEE
Q 016522          325 DTLLAKVVLNLGSL---------------------------------QNSHEGRITCLGLSAD--GSALCTGSWDTNLKV  369 (388)
Q Consensus       325 d~~~~~~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~i  369 (388)
                      |+.+++....+...                                 ...|.+.|++++|+++  +.+|++|+.||.|+|
T Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i  435 (437)
T 3gre_A          356 SLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI  435 (437)
T ss_dssp             ETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred             ECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence            99887755544210                                 1238999999999988  789999999999999


Q ss_pred             ec
Q 016522          370 SL  371 (388)
Q Consensus       370 w~  371 (388)
                      |.
T Consensus       436 w~  437 (437)
T 3gre_A          436 FQ  437 (437)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.6e-45  Score=322.36  Aligned_cols=301  Identities=15%  Similarity=0.177  Sum_probs=237.1

Q ss_pred             eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeee--EeeeCCccEEEEEECC-CCCEEEEeeCCCcE
Q 016522           58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTH--AIKLPCAWVMTCAFSP-TGQSVACGGLDSVC  133 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  133 (388)
                      .......+|...|+||+|+| ++++||+|+.||.|+|||+.+++...  .+.+|...|++++|+| ++.+|++|+.||+|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            33445667899999999999 56799999999999999998776544  4457899999999998 68999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      ++||++...     .........+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+     ..|...|.+++
T Consensus       190 ~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~  257 (435)
T 4e54_B          190 RLQDFKGNI-----LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVA  257 (435)
T ss_dssp             EEEETTSCE-----EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEE
T ss_pred             EEeeccCCc-----eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeee
Confidence            999997632     11112222344567899999986 78999999999999999754 34444     68999999999


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      |+|.+..++++|+.|+.|++||++....  .+....+|...|++++|+|++++|++++.||.|++||+.++.....+..+
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence            9996677999999999999999987632  23344679999999999999999999999999999999998877665433


Q ss_pred             cCC-CCCCCeEEEEecCCCCEEEEEe------------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEE-EECCCCCe
Q 016522          292 HGE-NEIPHVTSIAFSISGRLLFAGY------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA  357 (388)
Q Consensus       292 ~~~-~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~  357 (388)
                      ... .....+....|+|++.+++++.            .++.|++||..+++.+..+.   .+|...|.++ +|+|+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---DPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---CSSCCCCCCEEEECTTSSC
T ss_pred             cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---CCCCCcEEEEEEECCCCCE
Confidence            211 1111233456677766666654            23579999999999888764   5788889887 69999999


Q ss_pred             EEEccCCCeEEEeccce
Q 016522          358 LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       358 l~s~~~dg~v~iw~~~~  374 (388)
                      |++|+ |+.|+||+...
T Consensus       415 lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          415 LASAM-GYHILIWSQQE  430 (435)
T ss_dssp             EEEEC-SSEEEECCCC-
T ss_pred             EEEEc-CCcEEEEECCc
Confidence            99876 88999999764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.2e-44  Score=310.00  Aligned_cols=301  Identities=18%  Similarity=0.259  Sum_probs=244.5

Q ss_pred             eeeccccccCCeeEEEeCCCCCeE-EEEeC---CCcEEEEECCCCCeeeEe-eeCCccEEEEEECCC---CCEEEEeeCC
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRI-VSASQ---DGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPT---GQSVACGGLD  130 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~---dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d  130 (388)
                      ..+.+++|.+.|.+++|+|+++.+ ++|+.   ||.|++||+.+++..... ..|...|.+++|+|+   +.+|++|+.|
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            445678899999999999999655 55655   899999999988876544 368889999999998   6999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE------EeCCCceEEEeeCCCeEEEEecCCCc-eEEEeeccccc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQS  203 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~  203 (388)
                      |.|++||+.++.      .....+.+|...|.++.|      +|++ .++++++.||.|++||++++. ....+... ..
T Consensus        90 g~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~  161 (357)
T 3i2n_A           90 GNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPV-QG  161 (357)
T ss_dssp             SCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCC-TT
T ss_pred             CeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceecccc-CC
Confidence            999999998754      145677899999999966      4565 689999999999999999886 55555211 01


Q ss_pred             CCccCeEEEE----eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc---CCCEEEEeeCCCcEEE
Q 016522          204 GHTADVLSVS----ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRL  276 (388)
Q Consensus       204 ~~~~~i~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i  276 (388)
                      .+...+.+++    |+| ++.++++++.||.|++||++.. .. .....|...|.+++|+|   ++.+|++++.||.|++
T Consensus       162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence            2234888988    566 8899999999999999999976 33 44567889999999999   9999999999999999


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc-------------------eEEeecc
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA-------------------KVVLNLG  336 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~  336 (388)
                      ||+++++....+.......+...|.+++|+|+++ ++++++.||.|++||+..+                   +.+..+ 
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  317 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-  317 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-
Confidence            9998876655543211123455799999999999 8999999999999998754                   345555 


Q ss_pred             CCCCCcCCCeeEEEECCCCCeEE-EccCCCeEEEeccce
Q 016522          337 SLQNSHEGRITCLGLSADGSALC-TGSWDTNLKVSLHYY  374 (388)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~  374 (388)
                         ..|...|++++|+|++++|+ +++.||.|++|+...
T Consensus       318 ---~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          318 ---TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             ---ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ---ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence               67999999999999999998 899999999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-43  Score=304.93  Aligned_cols=266  Identities=21%  Similarity=0.366  Sum_probs=234.9

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMT  114 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~  114 (388)
                      .+.+.+..+..|+..+.+..+.+..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+..|...|.+
T Consensus        80 ~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~  159 (354)
T 2pbi_B           80 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA  159 (354)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred             EEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence            34456677888998888899999999999999999999999999999999999998643      345667889999999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce
Q 016522          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      ++|+|++..|++++.|+.|++||++++.       ....+.+|...|.+++|+|+. +.++++|+.||.|++||+++++.
T Consensus       160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          160 CSFTNSDMQILTASGDGTCALWDVESGQ-------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999999999999999998865       677889999999999998853 36899999999999999999999


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      ...+     ..|...|.+++|+| ++.+|++|+.|++|++||++.. ..+..+..+  ...+.+++|+|++.+|++|+.|
T Consensus       233 ~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          233 VQAF-----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEe-----cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence            8888     78999999999999 8899999999999999999876 455555433  3478999999999999999999


Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +.|++||+.++..+..+..     +...|++++|+|+|++|++|+.||.|++|+
T Consensus       306 ~~i~vwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CcEEEEECCCCceEEEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999988776643     445699999999999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-43  Score=307.93  Aligned_cols=293  Identities=22%  Similarity=0.349  Sum_probs=247.6

Q ss_pred             ceeeeccccccCCe--eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcE
Q 016522           57 LVCCRTLQGHAGKV--YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVC  133 (388)
Q Consensus        57 ~~~~~~l~~h~~~v--~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  133 (388)
                      ...+....+|...+  .+++|++  ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  158 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV  158 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeE
Confidence            33444555777664  4466664  5688899999999999999998887776 78889999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC-CCceEEEeecccccCCccCeEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ++||+.++.       ....+.+|...|.+++|++   .++++++.||.|++||++ .......+     ..|...|.++
T Consensus       159 ~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~  223 (401)
T 4aez_A          159 DIYDVESQT-------KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEVCGL  223 (401)
T ss_dssp             EEEETTTCC-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEE
T ss_pred             EEEECcCCe-------EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCeeEE
Confidence            999998755       6777889999999999943   689999999999999999 45556666     6899999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEee--CCCcEEEEECCCCceeeEee
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGS--DDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +|+| ++.+|++|+.||.|++||++.. .....+..|...|.+++|+|++ .++++++  .|+.|++||+.+++....+.
T Consensus       224 ~~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          224 AWRS-DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEcC-CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            9999 8899999999999999999987 7788888999999999999966 4556654  79999999999998887774


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEE--EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v  367 (388)
                      .      ...+.+++|+|+++++++  |+.||.|++||+.+++.......  .+|...|.+++|+|++++|++++.||.|
T Consensus       302 ~------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          302 A------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             C------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--ECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             C------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--cCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            3      235999999999999999  44899999999998655443211  5899999999999999999999999999


Q ss_pred             EEeccceee
Q 016522          368 KVSLHYYIF  376 (388)
Q Consensus       368 ~iw~~~~~~  376 (388)
                      ++|+.....
T Consensus       374 ~iw~~~~~~  382 (401)
T 4aez_A          374 KFWRVYDGD  382 (401)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCc
Confidence            999976543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-43  Score=313.68  Aligned_cols=313  Identities=12%  Similarity=0.141  Sum_probs=254.9

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      ..+.....|+....+....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++
T Consensus        75 ~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  153 (420)
T 3vl1_A           75 RLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA  153 (420)
T ss_dssp             EETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE
T ss_pred             EcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE
Confidence            34556667888777777777777 45566678999999999999999999999999888888899999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      |++|+.||.|++||+.++.       ....+.+|...|.+++|+|++ .++++++.||.|++||+++++....+...  .
T Consensus       154 l~s~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~  223 (420)
T 3vl1_A          154 LISSSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRK--E  223 (420)
T ss_dssp             EEEEETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBT--T
T ss_pred             EEEEeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecC--C
Confidence            9999999999999998755       456778999999999999986 68999999999999999999888887422  2


Q ss_pred             CCccCeEE---------------------EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          204 GHTADVLS---------------------VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       204 ~~~~~i~~---------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      .+...+.+                     ++|+| +++++++|+.||.|++||++...........|...|.+++|+|++
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN  302 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence            33444444                     44566 788999999999999999998844444445688999999999999


Q ss_pred             C-EEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE---eecc-
Q 016522          263 N-RFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---LNLG-  336 (388)
Q Consensus       263 ~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~-  336 (388)
                      . +|++++.||.|++||+++++. +..+...+    ...+.++.+ +++++|++++.||.|++||+......   .... 
T Consensus       303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~  377 (420)
T 3vl1_A          303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINE----GTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFET  377 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTCTTSCSEEEEEST----TSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred             CCEEEEEeCCCeEEEEEcCCCcCchhhhhccC----CCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence            8 999999999999999998755 45554422    235777755 57889999999999999998763211   1110 


Q ss_pred             -CCCCCcCCCeeEEEECCCCC---eEEEccCCCeEEEeccc
Q 016522          337 -SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       337 -~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~v~iw~~~  373 (388)
                       .....|.+.|.+++|+|++.   .|++++.+|.+.+|...
T Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence             01146888999999999999   78888889999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-42  Score=296.11  Aligned_cols=272  Identities=22%  Similarity=0.386  Sum_probs=234.9

Q ss_pred             ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  115 (388)
                      .+.+.+..+..|+...     ..++..+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...|.++
T Consensus        34 ~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~  113 (319)
T 3frx_A           34 LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV  113 (319)
T ss_dssp             EEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence            4556677788887642     34678899999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCC
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~  190 (388)
                      +|+|++.+|++|+.|+.|++||++..        ....+.+|...|.++.+.|..     ...+++++.|+.|++||+++
T Consensus       114 ~~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          114 DIDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence            99999999999999999999999742        466788999999999999853     24799999999999999999


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (388)
                      .+....+     .+|...|.+++|+| ++.+|++|+.||.|++||++.. +.+..+.. ...|.+++|+|++.+|++++.
T Consensus       186 ~~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          186 FQIEADF-----IGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             TEEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEET
T ss_pred             chhheee-----cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcC
Confidence            9888877     78999999999999 8899999999999999999987 66677764 468999999999999998876


Q ss_pred             CCcEEEEECCCCceeeEeeecc---CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      + .+++|++........+....   ...+...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       258 ~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          258 T-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             T-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             C-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            5 59999998776665543321   1123456899999999999999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-43  Score=305.47  Aligned_cols=253  Identities=17%  Similarity=0.213  Sum_probs=211.5

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee----EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      ....+|...|++++|+|++. +++++.||+|++||+.+++...    ....|...|.+++|+|++++|++|+.||.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34457999999999999975 5677889999999998876543    234688899999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      |+.++.       ....+.+|...|.+++|+++++.++++++.||.|++||+++++....+..   ..+...+.+++|+|
T Consensus       167 d~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp  236 (357)
T 4g56_B          167 DLSQKA-------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHP  236 (357)
T ss_dssp             ETTTTE-------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECT
T ss_pred             ECCCCc-------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccccccccchhhhh
Confidence            998755       67788999999999999999877899999999999999999876655421   45677899999999


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                      .++.+|++|+.|+.|++||++++ +.+..+.+|...|++++|+|++ ++|++|+.|+.|++||+++++.+..+      .
T Consensus       237 ~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------~  309 (357)
T 4g56_B          237 EKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------S  309 (357)
T ss_dssp             TSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------C
T ss_pred             cccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------C
Confidence            77889999999999999999987 7888999999999999999987 67999999999999999998776543      2


Q ss_pred             CCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceE
Q 016522          296 EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       296 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      |...|++++|+| ++.+|++++.||.|++||+.....
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            455799999998 789999999999999999876433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.1e-43  Score=333.90  Aligned_cols=294  Identities=22%  Similarity=0.343  Sum_probs=260.2

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      +...+.|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      ++.++.       ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++ .....+     ..|...|.+++|+
T Consensus        83 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~~v~~~~~~  149 (814)
T 3mkq_A           83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN  149 (814)
T ss_dssp             ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEE-----ECCSSCEEEEEEE
T ss_pred             ECCCCc-------EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEE-----cCCCCcEEEEEEE
Confidence            998765       667788999999999999997 67999999999999999987 555555     6889999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      |.++..+++++.||.|++||++.. .....+.. +...+.+++|+|  ++.+|++++.||.|++||+.+++....+..+ 
T Consensus       150 p~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-  227 (814)
T 3mkq_A          150 PKDPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-  227 (814)
T ss_dssp             TTEEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-
Confidence            977889999999999999999877 44444444 448999999999  9999999999999999999999887777543 


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEec
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSL  371 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~  371 (388)
                          ...+.+++|+|+++++++++.||.|++||+.+++....+    ..|...+.+++|+|++..+ ++++.|+.+.+|.
T Consensus       228 ----~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          228 ----MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             ----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred             ----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence                345999999999999999999999999999999998888    6788999999999998742 4445567777776


Q ss_pred             cc
Q 016522          372 HY  373 (388)
Q Consensus       372 ~~  373 (388)
                      ..
T Consensus       300 ~~  301 (814)
T 3mkq_A          300 LG  301 (814)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-44  Score=317.05  Aligned_cols=294  Identities=15%  Similarity=0.286  Sum_probs=248.9

Q ss_pred             ccCCeeEEEeCCCCC-eEEEE----------eCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           66 HAGKVYSLDWTSERN-RIVSA----------SQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        66 h~~~v~~~~~~~~~~-~l~t~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      +...|.+++|+|+++ +|++|          +.||.|++||+.+++   ....+ .|...|.+++|+|++++|++|+.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            345799999999987 99999          899999999998875   33333 4778899999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc------eEEEeecccccCC
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGH  205 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~~~  205 (388)
                      .|++|++.....   .......+.+|...|.+++|+|+++.++++++.||.|++||+.++.      .....  .....|
T Consensus        90 ~v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~  164 (416)
T 2pm9_A           90 SLELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSS  164 (416)
T ss_dssp             CEEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCS
T ss_pred             eEEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCC
Confidence            999999987321   1225677889999999999999855789999999999999999876      22221  112578


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------cCCeeEEEEccCC-CEEEEeeCCC---cEE
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDG-NRFGTGSDDG---TCR  275 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~  275 (388)
                      ...|.+++|+|.++.++++++.||.|++||++.. ..+..+..+      ...|.+++|+|++ .++++++.|+   .|+
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL  243 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence            8999999999955899999999999999999987 677777766      7889999999987 6899999998   999


Q ss_pred             EEECCCCc-eeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          276 LFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       276 i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      +||++++. ....+.    ..+...|.+++|+| ++++|++++.||.|++||+.+++.+..+    ..|...|++++|+|
T Consensus       244 ~~d~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          244 IWDLRNANTPLQTLN----QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PARGNWCFKTKFAP  315 (416)
T ss_dssp             EEETTSTTSCSBCCC----SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE----ECSSSCCCCEEECT
T ss_pred             EEeCCCCCCCcEEee----cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee----cCCCCceEEEEECC
Confidence            99999863 444332    03445699999999 8999999999999999999999999888    78999999999999


Q ss_pred             CC-CeEEEccCCCeEEEeccce
Q 016522          354 DG-SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       354 ~~-~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++ .+|++++.||.|++|+...
T Consensus       316 ~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          316 EAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             TCTTEEEECCSSSEEEEEESCC
T ss_pred             CCCCEEEEEecCCcEEEEEccC
Confidence            98 8999999999999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.7e-45  Score=317.50  Aligned_cols=293  Identities=15%  Similarity=0.190  Sum_probs=230.2

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      .++.|.++|++++|+|++++|++|+.||.|++||+.++  +....+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34457789999999999999999999999999999988  7788888999999999999999999999999999999998


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEeecccccC-CccCeEEEEee
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSG-HTADVLSVSIS  215 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~-~~~~i~~~~~~  215 (388)
                      ++.    .......+..|...|.+++|+|++ .+|++++.|+.|++||++++..   ...+     .. |...|.+++|+
T Consensus        86 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           86 PDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL-----KRPLRSTILSLDWH  155 (377)
T ss_dssp             -------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE-----CSSCCSCEEEEEEC
T ss_pred             CCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe-----ecccCCCeEEEEEc
Confidence            743    123456678899999999999986 6799999999999999998863   4455     44 89999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCC-----------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      | ++++|++++.||.|++||++..                 ...+..+ +|...|.+++|+|++++|++++.||.|++||
T Consensus       156 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          156 P-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             T-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             C-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9 8899999999999999998522                 1344445 8999999999999999999999999999999


Q ss_pred             CCCCce----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE-----------------------
Q 016522          279 IRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-----------------------  331 (388)
Q Consensus       279 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------  331 (388)
                      +.+++.    +..+..     +...|.+++|+|++++|++|+.++.+ +|+......                       
T Consensus       234 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T 3dwl_C          234 PSAPEQPPRALITVKL-----SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE  307 (377)
T ss_dssp             ECSTTSCEEECCCEEC-----SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred             CCCCCCcceeeEeecC-----CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence            999877    444433     34469999999999999998766554 776542110                       


Q ss_pred             ----------------Eee---------ccCCCCCcCCCeeEEEECCCC-C---eEEEccCCCeEEEecc
Q 016522          332 ----------------VLN---------LGSLQNSHEGRITCLGLSADG-S---ALCTGSWDTNLKVSLH  372 (388)
Q Consensus       332 ----------------~~~---------~~~~~~~~~~~v~~~~~~~~~-~---~l~s~~~dg~v~iw~~  372 (388)
                                      ...         .......|...|+++++.+.. .   .|+|||.||.|+||+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                            000         000113499999999976643 3   5999999999999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-42  Score=291.83  Aligned_cols=257  Identities=17%  Similarity=0.223  Sum_probs=213.9

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--CCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIF  136 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw  136 (388)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+..  .+.+..+.+|...|.+++|+++  +++|++|+.|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            46789999999999999999999999999999999974  3677889999999999999864  8999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEEE
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~  213 (388)
                      |+.++.     ......+..|...|.+++|+|+. +.+|++++.||.|++||++++..  ...+     ..|...|.+++
T Consensus        83 d~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-----~~h~~~v~~~~  152 (297)
T 2pm7_B           83 KEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSAS  152 (297)
T ss_dssp             EBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----ECCSSCEEEEE
T ss_pred             EcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----ecccCccceEe
Confidence            998643     12345677899999999999972 36899999999999999987632  2333     68899999999


Q ss_pred             eeCCC------------CcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEccCC---CEEEEeeCCCcEE
Q 016522          214 ISGSN------------SRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCR  275 (388)
Q Consensus       214 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~  275 (388)
                      |+|..            +.+|++|+.|+.|++||++....   ....+.+|...|.+++|+|++   .+|++++.|+.|+
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence            99842            57999999999999999987632   456788999999999999984   8999999999999


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +||++...............+...+.+++|+|++++|++++.||.|++|+..
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999875321111111112344579999999999999999999999999976

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.8e-42  Score=306.34  Aligned_cols=310  Identities=18%  Similarity=0.258  Sum_probs=266.2

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC--
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS--  118 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--  118 (388)
                      .+.+.+..+..|+..+.++...+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+..|...|.+++|+  
T Consensus       136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  214 (464)
T 3v7d_B          136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY  214 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence            334567888899999999999999999999999999988 99999999999999999999999999999999999998  


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCC----------------CCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDG----------------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      +++.++++|+.||.|++||+........                .......+.+|...+.++  ++++ .++++++.||.
T Consensus       215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~  291 (464)
T 3v7d_B          215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNT  291 (464)
T ss_dssp             SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSC
T ss_pred             CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCe
Confidence            5789999999999999999987542211                011255678898888887  4554 68999999999


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      |++||+.+++.+..+     ..|...|.+++|+| +++++++|+.||.|++||++++ ..+..+.+|...|.+++|+  +
T Consensus       292 i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~  362 (464)
T 3v7d_B          292 LIVWDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--D  362 (464)
T ss_dssp             EEEEETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--S
T ss_pred             EEEEECCCCcEEEEe-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--C
Confidence            999999999998888     78999999999999 8889999999999999999987 7888999999999999997  5


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      .+|++++.||.|++||+.++........      ...+..++|+|+++++++|+ ||.|++||+.+++.+....   ..|
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~---~~~  432 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI---LKD  432 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEC------TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT---TTT
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecC------CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh---ccC
Confidence            7999999999999999998876655432      22477889999999999998 8999999999999987632   578


Q ss_pred             CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...|.+++|+ +..++++++.||.+.+|...+
T Consensus       433 ~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ldf  463 (464)
T 3v7d_B          433 ADQIWSVNFK-GKTLVAAVEKDGQSFLEILDF  463 (464)
T ss_dssp             CSEEEEEEEE-TTEEEEEEEETTEEEEEEEEC
T ss_pred             CCcEEEEEec-CCEEEEEEEeCCeEEEEEeec
Confidence            8999999997 455666677788888876553

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.8e-43  Score=306.11  Aligned_cols=274  Identities=19%  Similarity=0.308  Sum_probs=233.9

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-------eeeEeeeCCccEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVM  113 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~  113 (388)
                      .+.+.+..+..|+....+....+.+|...|.+++|+|++++|++|+.|+.|++||+.+..       ....+.+|...|.
T Consensus        82 ~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~  161 (380)
T 3iz6_a           82 VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS  161 (380)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred             EEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence            445567788899999999999999999999999999999999999999999999986532       3456778999999


Q ss_pred             EEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          114 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       114 ~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ++.|+|++ ..|++|+.|+.|++||+.++.       ....+     .+|...|.+++|++.+..++++|+.||.|++||
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd  234 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQ-------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD  234 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTCC-------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCCc-------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEE
Confidence            99999974 679999999999999998755       33333     578999999999885568999999999999999


Q ss_pred             cC-CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-------CCeeEEEEc
Q 016522          188 IT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFF  259 (388)
Q Consensus       188 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~  259 (388)
                      ++ .+.....+     .+|...|.+++|+| ++.+|++|+.||+|++||++++ ..+..+..+.       ..|.+++|+
T Consensus       235 ~~~~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          235 LRITSRAVRTY-----HGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             TTTTCCCCEEE-----CCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             CCCCCcceEEE-----CCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEEC
Confidence            98 44666666     78999999999999 8899999999999999999987 6666665433       248999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      |++++|++|+.||.|++||+..++....+.... ..+...|++++|+|+|++|++|+.||.|++|++...
T Consensus       308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCCEEEEEECCCCEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            999999999999999999999888776653221 345567999999999999999999999999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-41  Score=299.54  Aligned_cols=278  Identities=21%  Similarity=0.382  Sum_probs=240.0

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      -.+.|+|+++ +.||+|. |++|+|||..+++....+.  .|...|++++|+|+|++|++|+.||.|++||+.+++    
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----
Confidence            3677999976 4777765 8999999999999887765  466789999999999999999999999999998865    


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                         ....+.+|...+.++.+++   .++++|+.|+.+++||..... ....+     ..|...+..+.++| ++.+++++
T Consensus       181 ---~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~  248 (420)
T 4gga_A          181 ---RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASG  248 (420)
T ss_dssp             ---EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEE
T ss_pred             ---EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEe-----cccccceeeeeecC-CCCeeeee
Confidence               6778899999999988863   689999999999999988754 34445     68999999999999 88999999


Q ss_pred             eCCCceEEEECCCCC---cceEEEecccCCeeEEEEccCC-CEEEE--eeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          226 SCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDG-NRFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       226 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      +.|+.+++||.....   ..+.....|...|.+++|+|.+ .++++  |+.|+.|++||+.++.....+....      .
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~------~  322 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------Q  322 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS------C
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc------c
Confidence            999999999998653   2456778899999999999955 45554  4579999999999998887775432      4


Q ss_pred             eEEEEecCCCCEEEEEe--cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          300 VTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +.++.|+|+++.+++++  .|+.|++||+.+++.+..+    .+|.+.|++++|+|||++|+||+.||+|+||+...
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            89999999999888765  7899999999999999999    79999999999999999999999999999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-42  Score=298.93  Aligned_cols=289  Identities=15%  Similarity=0.177  Sum_probs=246.0

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVC  133 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  133 (388)
                      +......+|.+.|++++|+|++++|++++.||.|++||+.+++   ....+..|...|.+++|+|+++ +|++|+.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            3445567899999999999999999999999999999998877   3455668899999999999999 99999999999


Q ss_pred             EEEeC-CCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---------CceEEEeeccc
Q 016522          134 SIFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---------GLRTSVFGGEF  201 (388)
Q Consensus       134 ~vw~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---------~~~~~~~~~~~  201 (388)
                      ++|++ ..+.        ...+.+  |...|.+++|+| + .++++++.||.|++||+++         ++....+    
T Consensus        82 ~~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----  147 (342)
T 1yfq_A           82 LKVDLIGSPS--------FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----  147 (342)
T ss_dssp             EEECSSSSSS--------EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----
T ss_pred             EEEEeccCCc--------eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE----
Confidence            99999 7643        366777  999999999999 4 7899999999999999986         5444433    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC-CCc-ceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEE
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d  278 (388)
                        .+...+.+++|+| +.  +++++.|+.|++||++. ... .......|...+.+++|+| +++++++++.||.|++|+
T Consensus       148 --~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          148 --KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             --SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             --eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence              4888999999997 43  89999999999999997 533 3344556888999999999 999999999999999999


Q ss_pred             CCCC------ceeeEeeeccC----CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-CCCee
Q 016522          279 IRTG------HQLQVYYQQHG----ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRIT  347 (388)
Q Consensus       279 ~~~~------~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~  347 (388)
                      ++..      +....+..+..    ..+...|.+++|+|++++|++++.||.|++||+.+++.+..+    ..| ...|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~  298 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVV  298 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSSEEE
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh----hcccCCCce
Confidence            9876      55555544321    112346999999999999999999999999999999999888    677 99999


Q ss_pred             EEEECCCCCeEEEccCCCe-EEEec
Q 016522          348 CLGLSADGSALCTGSWDTN-LKVSL  371 (388)
Q Consensus       348 ~~~~~~~~~~l~s~~~dg~-v~iw~  371 (388)
                      +++  |++++|++|+.||. .+.|.
T Consensus       299 ~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          299 KIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             Eec--CCCCeEEEEecCCccccccc
Confidence            999  99999999999998 66665

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8e-42  Score=293.81  Aligned_cols=284  Identities=18%  Similarity=0.264  Sum_probs=227.9

Q ss_pred             ccccCCCCCcccCCCCceee---eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCC---RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~  115 (388)
                      .+.+.+..+..|+.......   ....+|.+.|.+++|+|++++|++|+.|++|++||..++.  .+..+..|...|.++
T Consensus        32 as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v  111 (345)
T 3fm0_A           32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV  111 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE
T ss_pred             EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE
Confidence            34556778888987665422   2347899999999999999999999999999999988764  467788999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE-
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-  194 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-  194 (388)
                      +|+|++++|++|+.|+.|++||+....    .......+.+|...|.+++|+|++ .+|++++.|+.|++||.+++... 
T Consensus       112 ~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~  186 (345)
T 3fm0_A          112 AWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC  186 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEeCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE
Confidence            999999999999999999999998643    223456778999999999999997 68999999999999999887533 


Q ss_pred             -EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--------------cceEEEec-ccCCeeEEEE
Q 016522          195 -SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RAVRTFHG-HEGDVNTVKF  258 (388)
Q Consensus       195 -~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~-~~~~i~~~~~  258 (388)
                       ..+     .+|...|.+++|+| ++++|++++.||+|++||.....              ..+..+.+ |...|.+++|
T Consensus       187 ~~~~-----~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  260 (345)
T 3fm0_A          187 CATL-----EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW  260 (345)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred             EEEe-----cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE
Confidence             444     68999999999999 88999999999999999974321              12233444 8889999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCce----eeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                      +|++..|++++.|+.|++|+......    ...+.......|...|++++|+|++. +|++|+.||.|++|++.+++...
T Consensus       261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            99999999999999999999876432    11122222234566799999999985 99999999999999998887665


Q ss_pred             ec
Q 016522          334 NL  335 (388)
Q Consensus       334 ~~  335 (388)
                      ..
T Consensus       341 ~~  342 (345)
T 3fm0_A          341 HH  342 (345)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-41  Score=303.74  Aligned_cols=293  Identities=20%  Similarity=0.322  Sum_probs=249.7

Q ss_pred             ceeeeccccccCCe-eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           57 LVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        57 ~~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ......+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++ .+++|+.||.|++
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred             CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence            35567899999885 66666  56799999999999999999999999999999999999999988 9999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEee----------------
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFG----------------  198 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----------------  198 (388)
                      ||+.++.       ....+.+|...|.+++|++. +..++++++.||.|++||+.++.......                
T Consensus       188 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          188 WDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             EETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             EECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            9998755       67788899999999999963 23789999999999999998875332110                


Q ss_pred             --cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522          199 --GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (388)
Q Consensus       199 --~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (388)
                        .....+|...+.++.  + +++++++|+.||.|++||+++. +.+..+.+|...|.+++|+|+++++++|+.||.|++
T Consensus       261 ~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             TEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence              001157888888874  3 5689999999999999999987 788889999999999999999999999999999999


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ||+++++.+..+..     +...+.+++|+  +++|++++.||.|++||+.++......     .+...+..++|+++++
T Consensus       337 wd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          337 WDLENGELMYTLQG-----HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDN  404 (464)
T ss_dssp             EETTTTEEEEEECC-----CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSS
T ss_pred             EECCCCcEEEEEeC-----CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCC
Confidence            99999988887744     34469999997  579999999999999999988777665     4667788899999999


Q ss_pred             eEEEccCCCeEEEeccceee
Q 016522          357 ALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~~~~~~  376 (388)
                      +|++|+ ||.|++|+.....
T Consensus       405 ~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          405 ILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             EEEEEE-TTEEEEEETTTCC
T ss_pred             EEEEec-CCeEEEEECCCCc
Confidence            999998 9999999976433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6e-42  Score=294.06  Aligned_cols=285  Identities=21%  Similarity=0.312  Sum_probs=246.4

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      |.++|.+++|+|+|++++++..++.+..|+............|...|.+++|+|+++++++++ ||.|++|++..+... 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-   85 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-   85 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence            567899999999999999998888887776655555555567899999999999999999999 999999999875421 


Q ss_pred             CCCceeEEe--cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522          146 GNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRM  221 (388)
Q Consensus       146 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  221 (388)
                         .....+  ..|...|.+++|+|++ .++++++.||.|++||+.+++  ....+     ..|...+.+++|+| ++++
T Consensus        86 ---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~  155 (337)
T 1gxr_A           86 ---SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAEL-----TSSAPACYALAISP-DSKV  155 (337)
T ss_dssp             ---SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEE-----ECSSSCEEEEEECT-TSSE
T ss_pred             ---eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeec-----ccCCCceEEEEECC-CCCE
Confidence               122222  3789999999999986 689999999999999999887  34444     57889999999999 8899


Q ss_pred             EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      +++++.||.|++||+++. +....+..|...+.+++|+|++++|++++.||.|++||+++++....+..      ...+.
T Consensus       156 l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~v~  228 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------TSQIF  228 (337)
T ss_dssp             EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEE
T ss_pred             EEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC------CCceE
Confidence            999999999999999987 78888889999999999999999999999999999999999887776532      23599


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +++|+|+++++++++.++.|++||+.+++... +    ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            99999999999999999999999999887653 3    57999999999999999999999999999999754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5e-42  Score=342.23  Aligned_cols=318  Identities=21%  Similarity=0.313  Sum_probs=275.2

Q ss_pred             ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC--C
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--T  120 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~  120 (388)
                      .+.+..+..|+..+.+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|  +
T Consensus       633 ~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          633 CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             EeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999  5


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      +.++++|+.||.|++||+.++.       ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++.....+...
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  784 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVK  784 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred             ceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceeccc
Confidence            5689999999999999998865       677888999999999999987 68999999999999999887655443210


Q ss_pred             --------------------------------------------------cccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522          201 --------------------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (388)
Q Consensus       201 --------------------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  230 (388)
                                                                        ....|...+.+++|+| ++.++++++.||.
T Consensus       785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~  863 (1249)
T 3sfz_A          785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC  863 (1249)
T ss_dssp             CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC
T ss_pred             ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe
Confidence                                                              1126778899999999 8899999999999


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-------------------------
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-------------------------  285 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------  285 (388)
                      |++||+.+. ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+....                         
T Consensus       864 v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1249)
T 3sfz_A          864 VELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN  942 (1249)
T ss_dssp             EEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred             EEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence            999999987 788889999999999999999999999999999999997542110                         


Q ss_pred             ----eEeeeccC---CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE
Q 016522          286 ----QVYYQQHG---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  358 (388)
Q Consensus       286 ----~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  358 (388)
                          ........   ......+.+++|+|+++++++|+.+|.|++||+.+++....+    .+|...|++++|+|+|++|
T Consensus       943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A          943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG----VGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp             SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC----CCCSSCCCCEEECSSSSCE
T ss_pred             CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec----ccCCCceEEEEECCCCCEE
Confidence                00000000   011235899999999999999999999999999999988887    7899999999999999999


Q ss_pred             EEccCCCeEEEeccce
Q 016522          359 CTGSWDTNLKVSLHYY  374 (388)
Q Consensus       359 ~s~~~dg~v~iw~~~~  374 (388)
                      ++++.||.|++|+...
T Consensus      1019 ~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             EEECSSSBEEEEETTT
T ss_pred             EEEcCCCEEEEEECCC
Confidence            9999999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=306.89  Aligned_cols=303  Identities=12%  Similarity=0.170  Sum_probs=234.5

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----------eeeEeeeCC------------ccEEEEEECCCC-
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPC------------AWVMTCAFSPTG-  121 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-  121 (388)
                      |.+.|++++|+|+|++||+|+.||.|++||+.+++           ....+..|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            78899999999999999999999999999998877           477888887            889999999998 


Q ss_pred             -CEEEEeeCCCcEEEEeCCCCCCC--------------------CCCCc------------ee-EEecccccceEEEEEE
Q 016522          122 -QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLP------------VS-RMLSGHKGYVSCCQYV  167 (388)
Q Consensus       122 -~~l~~~~~dg~i~vw~~~~~~~~--------------------~~~~~------------~~-~~~~~~~~~v~~~~~~  167 (388)
                       ..|++++.||.|++|++......                    ....+            .. ....+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             89999999999999998753210                    00000            01 1246899999999999


Q ss_pred             eCCCceEEEeeCCCeEEEEecCCC-ceEEEee--cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--  242 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  242 (388)
                      |++ .+|++| .||.|++||+++. .....+.  ......|...|.+++|+|.+..+|++|+.||.|++||++.. ..  
T Consensus       187 ~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~  263 (447)
T 3dw8_B          187 SDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALCD  263 (447)
T ss_dssp             TTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSSC
T ss_pred             CCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-cccc
Confidence            986 678888 7999999999843 3333221  11125788999999999944499999999999999999987 43  


Q ss_pred             --eEEEecccC------------CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCC----------C
Q 016522          243 --VRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENE----------I  297 (388)
Q Consensus       243 --~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~----------~  297 (388)
                        ...+..|..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+..+.....          .
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              677888776            8999999999999999999 9999999997 776666654321100          0


Q ss_pred             CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC----------------------------CCCcCCCeeEE
Q 016522          298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----------------------------QNSHEGRITCL  349 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~v~~~  349 (388)
                      ..+..++|+|++++|++|+.||.|++||+.+++.+......                            ...+...|..+
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  422 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT  422 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence            01334899999999999999999999999988775311000                            01345679999


Q ss_pred             EECCCCCeEEEccCCCeEEEeccc
Q 016522          350 GLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       350 ~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +|+|++.+|++++.++ +++|...
T Consensus       423 ~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          423 AWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EECSSSSEEEEECSSC-EEEEECC
T ss_pred             EECCCCCEEEEEecce-eeeeccc
Confidence            9999999999998776 7777543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-43  Score=318.04  Aligned_cols=310  Identities=16%  Similarity=0.166  Sum_probs=231.1

Q ss_pred             ccCCCCCcccCCCCcee----eeccccccCCeeEEEeCCC------CCeEEEEeCCCcEEEEECCCCCe-----------
Q 016522           43 RSQGRAPVSFGPTDLVC----CRTLQGHAGKVYSLDWTSE------RNRIVSASQDGRLIVWNALTSQK-----------  101 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~----~~~l~~h~~~v~~~~~~~~------~~~l~t~~~dg~v~iwd~~~~~~-----------  101 (388)
                      .+.+..+..|+....++    ..++.+|.+.|.+++|+|+      +.+||+++.||+|++||+.++..           
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            44556677787654432    2457788999999999997      57999999999999999977642           


Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE--EEEeCCCceEEEeeC
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC--QYVPDEDTHLITSSG  179 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~  179 (388)
                      ...+..|...|++++|++++ .|++|+.||+|++||++++.      .....+.+|...|.++  .|+|++..+|++|+.
T Consensus       259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence            23667888999999999864 89999999999999998643      1345678999999999  456654478999999


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEE
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (388)
                      |++|++||+++++....+     .+|.  ..+.+++|+| ++..+++++.|++|++||++.. .....+.+|.+.|++++
T Consensus       332 D~tvklWD~~~~~~~~~~-----~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTT-----VSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIG  404 (524)
T ss_dssp             TSEEEEECGGGHHHHCEE-----EEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEE
T ss_pred             CCeEEEEECCCCCccccc-----ccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEE
Confidence            999999999988766555     2332  3578999999 7788999999999999999987 66678889999999999


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeecc
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLG  336 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~  336 (388)
                      |+|++++|++|+.||+|++||+... ................+..++|+|++..+.. ..  .+.+|+.. ++..+..+ 
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l-  479 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKI-  479 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC------------
T ss_pred             eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeee-
Confidence            9999999999999999999998653 2211110000011124678999999985532 22  23344332 45556666 


Q ss_pred             CCCCCcCCCeeEEEECCCCC---eEEEccCCCeEEEeccce
Q 016522          337 SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       337 ~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~v~iw~~~~  374 (388)
                         .+|...|.+++|+|++.   .|++|+.||.|+||....
T Consensus       480 ---~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          480 ---DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ---cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence               78999999999999954   999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-41  Score=290.81  Aligned_cols=277  Identities=22%  Similarity=0.322  Sum_probs=226.4

Q ss_pred             cccccCCCCCcccCCCC-------ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE
Q 016522           40 GYSRSQGRAPVSFGPTD-------LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV  112 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v  112 (388)
                      ..+.+.+..+..|+...       ..+...+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+..|...|
T Consensus        42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v  121 (343)
T 2xzm_R           42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV  121 (343)
T ss_dssp             EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCE
T ss_pred             EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcE
Confidence            34556778888898653       35677899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC---------ceEEEeeCCCeE
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED---------THLITSSGDQTC  183 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~v  183 (388)
                      .+++|+|++++|++++.|+.|++||+....     .........|...|.+++|+|++.         .++++++.||.|
T Consensus       122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          122 YSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            999999999999999999999999997421     001111237889999999999762         579999999999


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  263 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (388)
                      ++||. .......+     ..|...|.+++|+| ++++|++|+.||.|++||++........+. +...|.+++|+|++.
T Consensus       197 ~iwd~-~~~~~~~~-----~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          197 KVWNT-NFQIRYTF-----KAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ  268 (343)
T ss_dssp             EEEET-TTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC
T ss_pred             EEEcC-CCceeEEE-----cCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC
Confidence            99994 45555555     68999999999999 889999999999999999965534544443 556799999999998


Q ss_pred             EEEEeeCCCcEEEEECCCCceee--Eeeec------cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          264 RFGTGSDDGTCRLFDIRTGHQLQ--VYYQQ------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       264 ~l~~~~~dg~i~i~d~~~~~~~~--~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      +++++ .|+.|++||+.+++...  .+...      ....+...+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus       269 ~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          269 WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            77655 57889999998876544  22110      001345579999999999999999999999999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.6e-41  Score=299.06  Aligned_cols=305  Identities=26%  Similarity=0.398  Sum_probs=268.6

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      .++.+..+..|+..+.++...+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++.+..+..|...|.+++|+  +
T Consensus       134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E  209 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence            45567788899999999999999999999999998  5699999999999999999999999999999999999995  6


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      +.+++|+.||.|++||+.++.       ....+.+|...|.++.|  ++ .++++|+.||.|++||+++++....+    
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~----  275 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTL----  275 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEE----
T ss_pred             CEEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEe----
Confidence            789999999999999998755       66778899999999999  33 67999999999999999999988888    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                       ..|...+.++.+   ++.++++++.||.|++||++++ ..+..+.+|...+.++.+  +++++++++.||.|++||+++
T Consensus       276 -~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          276 -QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             -CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             -cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence             689999999998   5678999999999999999987 788889999999988887  467999999999999999999


Q ss_pred             CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeEEEECCCCCeEEE
Q 016522          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      ++.+..+...  ..+...|.+++|+  +++|++|+.||.|++||+.+++.+..+.. ....|.+.|++++|+|++.+|++
T Consensus       349 ~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~  424 (445)
T 2ovr_B          349 GQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  424 (445)
T ss_dssp             CCEEEEECST--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence            9888777542  2245579999995  57999999999999999999988877621 11468889999999999999999


Q ss_pred             ccCCCe----EEEecccee
Q 016522          361 GSWDTN----LKVSLHYYI  375 (388)
Q Consensus       361 ~~~dg~----v~iw~~~~~  375 (388)
                      |+.||.    |.||+....
T Consensus       425 ~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          425 GSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             ECSSSSSCCEEEEEECCCC
T ss_pred             cccCCCCccEEEEEECCCC
Confidence            999998    999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.8e-43  Score=310.90  Aligned_cols=283  Identities=18%  Similarity=0.272  Sum_probs=239.3

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ..+++++|+|++++|++++.||.|++||+.+++....+..+ ..+....|++++++|++|+.||.|++||+..+.     
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----
Confidence            34568999999999999999999999999887776666655 445566789999999999999999999998644     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                        ....+.+|...|.+++|+|++ .+|++++.||.|++||+.+++....+     ..|...|.+++|+| ++.+|++++.
T Consensus       131 --~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~~~  201 (420)
T 3vl1_A          131 --QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIID-RGRNVLSASL  201 (420)
T ss_dssp             --EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEET-TTTEEEEEET
T ss_pred             --eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcC-CCCEEEEEcC
Confidence              556667999999999999986 68999999999999999999888887     68999999999999 8899999999


Q ss_pred             CCceEEEECCCCCcceEEEec---cc---------------------CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          228 DSTARLWDTRVASRAVRTFHG---HE---------------------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~---~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ||.|++||++++ +.+..+..   |.                     ..+.+++|+|++++|++++.||.|++||+++++
T Consensus       202 d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          202 DGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             TSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            999999999987 66666664   22                     444555667899999999999999999999988


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      ....+..    .+...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.   ..|...|.++.+ +++++|+++
T Consensus       281 ~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~l~s~  352 (420)
T 3vl1_A          281 QTIQLPS----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYF-AAGALFVSS  352 (420)
T ss_dssp             EEEEECC----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEE-ETTEEEEEE
T ss_pred             eeEEccc----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEe-CCCCEEEEe
Confidence            7776644    2344699999999999 999999999999999988643 44442   337778888866 478899999


Q ss_pred             cCCCeEEEeccce
Q 016522          362 SWDTNLKVSLHYY  374 (388)
Q Consensus       362 ~~dg~v~iw~~~~  374 (388)
                      +.||.|++|+...
T Consensus       353 ~~d~~v~iw~~~~  365 (420)
T 3vl1_A          353 GFDTSIKLDIISD  365 (420)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             cCCccEEEEeccC
Confidence            9999999999653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.4e-43  Score=302.92  Aligned_cols=289  Identities=12%  Similarity=0.091  Sum_probs=220.5

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCC-------cEEEEECCCCCee----------eEeeeCCccEEEEEECCCCCEEEEe---
Q 016522           68 GKVYSLDWTSERNRIVSASQDG-------RLIVWNALTSQKT----------HAIKLPCAWVMTCAFSPTGQSVACG---  127 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg-------~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~---  127 (388)
                      -||++++|+||+++|++|+.+.       .|++|++..+...          ..+..+...|.+++++  ++.+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4899999999999999997643       5999998765421          2344566677777664  5566655   


Q ss_pred             --------eCCCcEEEEeCCCCCCCCCCCceeEE-----ecccccceEEEEEEeCCCce-EEEeeCCCeEEEEecCCCce
Q 016522          128 --------GLDSVCSIFNLNSPTDKDGNLPVSRM-----LSGHKGYVSCCQYVPDEDTH-LITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       128 --------~~dg~i~vw~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~  193 (388)
                              +.|+.+++|++......   ......     ...+...+.+++|+|+|..+ +++++.|++|++||+++++.
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQ---LEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTE---EEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCce---EEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                    45778999998764321   111111     12344568899999998543 23556799999999999998


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-EEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDG  272 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  272 (388)
                      ...+      .|...|.+++|+| +++++++++.+ .+.+|+..++.... .....|...|.+++|+|+++++++++.|+
T Consensus       170 ~~~~------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          170 KFEI------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             EEEE------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             EEEe------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            8876      4677899999999 88999998855 56667666553332 23456888999999999999999999887


Q ss_pred             ----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          273 ----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       273 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                          .+++|++........... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+.   .+|...|++
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---~gH~~~V~~  317 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---QAHSFAITE  317 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---TSSSSCEEE
T ss_pred             cceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---CcccCCEEE
Confidence                688899877654322111 112344569999999999999999999999999999999887742   689999999


Q ss_pred             EEECCCCCeEEEccCCCeEEEeccc
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ++|+|||++|++|+.|++|+||...
T Consensus       318 v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-41  Score=336.96  Aligned_cols=292  Identities=25%  Similarity=0.322  Sum_probs=262.8

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      .++.       ....+.+|...|.+++|+|++ ..++++|+.||.|++||+.++.....+     .+|...|.+++|+| 
T Consensus       687 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~sp-  753 (1249)
T 3sfz_A          687 ATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSP-  753 (1249)
T ss_dssp             TTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEECS-
T ss_pred             CCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEec-
Confidence            8865       677888999999999999963 357889999999999999999998888     78999999999999 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEec-------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  284 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  284 (388)
                      ++.++++++.||.|++||++.. .....+..             +...+.+++|+|+++.+++++ ++.+.+||+.++..
T Consensus       754 ~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          754 DDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL  831 (1249)
T ss_dssp             STTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc
Confidence            8889999999999999999876 44333321             233688999999999999987 68999999999988


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      ...+...    +...+.+++|+|+++++++++.||.|++||+.++..+..+    .+|.+.|++++|+|++++|++++.|
T Consensus       832 ~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          832 LAEIHTG----HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EEEEECS----SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEcCC----CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCC
Confidence            8776532    3346999999999999999999999999999999999888    7999999999999999999999999


Q ss_pred             CeEEEeccc
Q 016522          365 TNLKVSLHY  373 (388)
Q Consensus       365 g~v~iw~~~  373 (388)
                      |.|++|+..
T Consensus       904 g~v~vw~~~  912 (1249)
T 3sfz_A          904 QTIRVWETK  912 (1249)
T ss_dssp             SCEEEEEHH
T ss_pred             CeEEEEEcc
Confidence            999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-41  Score=293.49  Aligned_cols=300  Identities=16%  Similarity=0.198  Sum_probs=245.9

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCC---CCeEEEEeCCCcEEEEECCC-CCee-eEeeeCCccEEEEEECCCCCEEE
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      .++..+.+.+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            3455677888899999999999999999   59999999999999999987 5554 67888999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE--EeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      +++.||.|++||+.++.        ......|...|.+++|  ++++ .++++++.||.|++||+++++....+     .
T Consensus       103 s~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~  168 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL-----Q  168 (368)
T ss_dssp             EEETTSEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE-----E
T ss_pred             EEcCCCcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE-----e
Confidence            99999999999998754        3346679999999999  6665 67999999999999999999888877     3


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCCCE----EEEeeCCCcEEEEE
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR----FGTGSDDGTCRLFD  278 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d  278 (388)
                      .+ ..+.++.+.+   ..+++++.++.+.+|+++.......... .+...+.++++.++...    +++++.||.|++||
T Consensus       169 ~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          169 LP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             CS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             cC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            33 4677777764   4788888999999999987644433332 23445666777665544    99999999999999


Q ss_pred             CCCCc---eeeEeeeccC-------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          279 IRTGH---QLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       279 ~~~~~---~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      ++...   ....+..+..       ..+...|++++|+|++++|++|+.||.|++||+.+++.+..+    ..|...|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~  320 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISA  320 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEE
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceE
Confidence            98873   3344333221       011125999999999999999999999999999999999988    789999999


Q ss_pred             EEECCCCCeEEEccCCCeEEEecc
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ++|+|+|++|++|+.|+..+.|..
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTCGGG
T ss_pred             EEECCCCCeEEEEecccccccccc
Confidence            999999999999999987776664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=281.30  Aligned_cols=276  Identities=21%  Similarity=0.387  Sum_probs=234.5

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      .++|+||+++ +||+| .|++|+|||+.+++.+..+.  .|...|++++|+|++++|++|+.||.|++|++++++     
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence            5789999886 77765 59999999999999888775  466789999999999999999999999999999865     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                        ....+.+|...+.++.+.+   .++++++.++.+++|+...... ...+     ..|...+..+.+.+ ++.++++++
T Consensus       101 --~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~  169 (318)
T 4ggc_A          101 --RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASGG  169 (318)
T ss_dssp             --EEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             --eEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEE-----cCccCceEEEEEcC-CCCEEEEEe
Confidence              6778889998888766553   5799999999999999887644 3444     68899999999998 889999999


Q ss_pred             CCCceEEEECCCCC---cceEEEecccCCeeEEEEccCCCEE---EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522          227 CDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (388)
Q Consensus       227 ~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (388)
                      .||.|++||++++.   ........+.+.|.++.++|++..+   ++++.++.|++||.............      ..+
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~------~~v  243 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH------SQV  243 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS------SCE
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce------eee
Confidence            99999999998753   2345666788899999999966533   46678899999999988776654332      248


Q ss_pred             EEEEecCCCCEEEEEe--cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          301 TSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ..+.|+|+++.+++++  .|+.|++||+.+++.+..+    .+|.+.|++++|+|+|++|+||+.||+|+||+..
T Consensus       244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            9999999999877654  7999999999999999999    7999999999999999999999999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-41  Score=289.10  Aligned_cols=276  Identities=19%  Similarity=0.216  Sum_probs=214.7

Q ss_pred             ccccCCCCCcccCCCC--ceeeecc-cc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-------CCeeeEeeeCC
Q 016522           41 YSRSQGRAPVSFGPTD--LVCCRTL-QG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPC  109 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~--~~~~~~l-~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~  109 (388)
                      .+.+.+..+..|+...  ......+ .+ |.+.|.+++|+|++++|++|+.|++|++||+..       .+....+..|.
T Consensus        28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~  107 (330)
T 2hes_X           28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE  107 (330)
T ss_dssp             EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred             EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence            4456677888888765  3555666 44 999999999999999999999999999999853       34566788899


Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..|.+++|+|++++|++|+.|+.|++||+....   ........+.+|...|.+++|+|++ .+|++++.|+.|++||..
T Consensus       108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESG---EEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             -CEEEEEECTTSCEEEEEETTSCEEEEECCTTC---CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC---CCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECC
Confidence            999999999999999999999999999995422   1223566788999999999999986 689999999999999998


Q ss_pred             CC--ceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCC-------cceEEEec-ccCCeeEEEE
Q 016522          190 TG--LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-------RAVRTFHG-HEGDVNTVKF  258 (388)
Q Consensus       190 ~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~-~~~~i~~~~~  258 (388)
                      ++  +.+..+     .+|...|.+++|+|.. +.+|++|+.|++|++||++...       .....+.. |...|.+++|
T Consensus       184 ~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  258 (330)
T 2hes_X          184 DDDWECVAVL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW  258 (330)
T ss_dssp             TTEEEEEEEE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred             CCCeeEEEEc-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence            76  455666     7899999999999942 5689999999999999987541       12333444 8899999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC-CeEEEEecC--CCCEEEEEecCCcEEEEEccc
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-HVTSIAFSI--SGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ++++ +|++++.||.|++||..++.........  ..+.. .|.+++|+|  ++++|++|+.||.|++||+..
T Consensus       259 s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          259 GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CTTS-CEEEEETTSCEEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9765 7999999999999999876422111111  12333 699999999  688999999999999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-41  Score=313.29  Aligned_cols=302  Identities=15%  Similarity=0.233  Sum_probs=260.2

Q ss_pred             CCCCcccCCCCc----eeeeccccccCC-eeEEEeCC--CCCeEEEEeCCCcEEEEECCCC--------CeeeEeeeCCc
Q 016522           46 GRAPVSFGPTDL----VCCRTLQGHAGK-VYSLDWTS--ERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCA  110 (388)
Q Consensus        46 ~~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~--------~~~~~~~~~~~  110 (388)
                      +.....|+..+.    +....+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        +....+..|..
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  117 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG  117 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence            456777888877    889999999999 99999999  9999999999999999999754        66777888999


Q ss_pred             cEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          111 WVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      .|.+++|+|++++|++++.+    +.|.+|+...         ....+.+|...|.+++|+|++..++++++.||.|++|
T Consensus       118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vw  188 (615)
T 1pgu_A          118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY  188 (615)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEE
Confidence            99999999999999999987    6888888433         5677889999999999999986689999999999999


Q ss_pred             ecCCCceEEEeecccccCCcc---CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-e---cccCCeeEEEEc
Q 016522          187 DITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-H---GHEGDVNTVKFF  259 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~i~~~~~~  259 (388)
                      |+.+++....+     ..|..   .|.+++|+|.+++++++++.||.|++||++++ +.+..+ .   .|...|.+++|+
T Consensus       189 d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~  262 (615)
T 1pgu_A          189 QGPPFKFSASD-----RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL  262 (615)
T ss_dssp             ETTTBEEEEEE-----CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES
T ss_pred             eCCCcceeeee-----cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc
Confidence            99999988888     67888   99999999932899999999999999999887 677777 5   899999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                       ++++|++++.||.|++||+++++....+.... ......+.++.|+ +++++++++.||.|++||+.+++.+..+    
T Consensus       263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~----  335 (615)
T 1pgu_A          263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI----  335 (615)
T ss_dssp             -SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----
T ss_pred             -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----
Confidence             99999999999999999999998887776542 1223457888885 8899999999999999999998888887    


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .+|...|++++| |+   |++++.||.|++|+..
T Consensus       336 ~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          336 SGHNKGITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             CCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            677778888887 66   6666666666666643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.5e-41  Score=297.20  Aligned_cols=278  Identities=24%  Similarity=0.401  Sum_probs=243.6

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      .....+|...|.+++|  ++++|++|+.||.|++||+.+++....+..|...|.+++|  ++++|++|+.||.|++||+.
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            3444567788999987  7889999999999999999999999999999999999999  78999999999999999998


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE---EEeecccccCCccCeEEEEeeC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      ++.       ....+.+|...|.+++|++   .++++|+.||.|++||+.++...   ..+     .+|...|.++++  
T Consensus       202 ~~~-------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~--  264 (435)
T 1p22_A          202 TGE-------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVL-----VGHRAAVNVVDF--  264 (435)
T ss_dssp             SCC-------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEE-----CCCSSCEEEEEE--
T ss_pred             CCc-------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEe-----cCCCCcEEEEEe--
Confidence            765       6778889999999999974   47999999999999999987655   333     689999999999  


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                       +++++++|+.||.|++||+++. ..+..+.+|...|.+++|  +++++++|+.||.|++||+++++.+..+..     +
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----h  335 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG-----H  335 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC-----C
T ss_pred             -CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----C
Confidence             4578999999999999999987 788899999999999999  478999999999999999999988887754     3


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccce---------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v  367 (388)
                      ...|.+++|  ++.+|++|+.||.|++||+.++.         .+..+    .+|.+.|++++|  ++.+|++|+.||.|
T Consensus       336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence            446999998  78899999999999999998776         67777    789999999999  68899999999999


Q ss_pred             EEecccee
Q 016522          368 KVSLHYYI  375 (388)
Q Consensus       368 ~iw~~~~~  375 (388)
                      ++|+....
T Consensus       408 ~iwd~~~~  415 (435)
T 1p22_A          408 LIWDFLND  415 (435)
T ss_dssp             EEEC----
T ss_pred             EEEECCCC
Confidence            99997543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.9e-41  Score=312.42  Aligned_cols=307  Identities=12%  Similarity=0.167  Sum_probs=252.1

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccC---CeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEe-e---eCCccE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAI-K---LPCAWV  112 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~-~---~~~~~v  112 (388)
                      .....+.....|+....++...+.+|.+   .|++++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|...|
T Consensus       177 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  256 (615)
T 1pgu_A          177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI  256 (615)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred             EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCce
Confidence            3445667788899999999999999999   9999999999 999999999999999999999999988 6   889999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc----ccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      .+++|+ ++++|++++.||.|++||+.++.       ....+..+    ...+.++.|. + +.++++++.||.|++||+
T Consensus       257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          257 FALSWL-DSQKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             EEEEES-SSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEET
T ss_pred             EEEEEc-CCCEEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcccCceeEEEeC-C-CCeEEEEECCCCEEEEEC
Confidence            999999 99999999999999999998754       44555544    4678888886 4 468999999999999999


Q ss_pred             CCCceEEEeecccccCCccC---------------------------------eEEEEeeCCC-----------------
Q 016522          189 TTGLRTSVFGGEFQSGHTAD---------------------------------VLSVSISGSN-----------------  218 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~---------------------------------i~~~~~~~~~-----------------  218 (388)
                      .+++....+     ..|...                                 |.+++|.+ +                 
T Consensus       327 ~~~~~~~~~-----~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~~~~~  400 (615)
T 1pgu_A          327 GHDEVLKTI-----SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGI  400 (615)
T ss_dssp             TEEEEEEEE-----CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTE
T ss_pred             CCCcEEEEE-----eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECC-CcEEEEEeCCCCEEEEEc
Confidence            887766665     333333                                 33333311 1                 


Q ss_pred             -------------------------------------------------------CcEEEEeeC-CCceEEEECCCCCcc
Q 016522          219 -------------------------------------------------------SRMFVSGSC-DSTARLWDTRVASRA  242 (388)
Q Consensus       219 -------------------------------------------------------~~~l~~~~~-dg~i~i~d~~~~~~~  242 (388)
                                                                             +.++++++. ||.|++||+... ..
T Consensus       401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~  479 (615)
T 1pgu_A          401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV  479 (615)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE
T ss_pred             ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc
Confidence                                                                   234444444 555555555543 22


Q ss_pred             e-EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC----------CCCE
Q 016522          243 V-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI----------SGRL  311 (388)
Q Consensus       243 ~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~  311 (388)
                      . ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+...    +...|++++|+|          ++++
T Consensus       480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~~~~~~~~  555 (615)
T 1pgu_A          480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEKGANEEEIEEDL  555 (615)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC------CCSCCE
T ss_pred             cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----CCCceeEEEEcCccccccccccCCCE
Confidence            2 455678899999999999999999999999999999999887765331    445699999999          9999


Q ss_pred             EEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          312 LFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       312 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      |++++.||.|++||+.++ +.+..+    .+|...|++++|+|+++ |++++.||.|++|+..
T Consensus       556 l~~~~~dg~i~iw~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             EEEEcCCCcEEEEECCCCceechhh----hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            999999999999999987 677777    78999999999999999 9999999999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.7e-42  Score=295.03  Aligned_cols=307  Identities=13%  Similarity=0.159  Sum_probs=230.0

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC----eeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcE
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVC  133 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  133 (388)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.++.    ....+..|...|.+++|+|  ++++|++|+.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678999999999999999999999999999999998763    5666788999999999999  69999999999999


Q ss_pred             EEEeCCCCCCCC--CCCceeEEecccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEEEeec--------cc
Q 016522          134 SIFNLNSPTDKD--GNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGG--------EF  201 (388)
Q Consensus       134 ~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------~~  201 (388)
                      ++||+..+....  ........+..|...|.+++|+|+  + .++++++.||.|++||+++++....+..        ..
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999998754211  112356777899999999999998  5 6899999999999999988764433210        11


Q ss_pred             ccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCC----CEEEEeeCCCcE
Q 016522          202 QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTC  274 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i  274 (388)
                      ...+...+.+++|+|.  ++.++++++.++.+.+|+..... ..+..+.+|...|.+++|+|++    ++|++++.||.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence            1367889999999994  38899999999999888876652 1366778899999999999998    899999999999


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE----ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      ++||++.+...........     .......++....++.+    .....+.+|+....+.+..+    .+|...|++++
T Consensus       243 ~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~  313 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH----DDHNGEVWSVS  313 (351)
T ss_dssp             EEEEEEECC--------------------------------------------CCSEEEEEEEEE----CTTSSCEEEEE
T ss_pred             EEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEE----ecccccEEEEE
Confidence            9999987655443322111     13333334443333333    33446677777777888877    78999999999


Q ss_pred             ECCCCCeEEEccCCCeEEEeccceee
Q 016522          351 LSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       351 ~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                      |+|++++|++|+.||.|+||+.....
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCc
Confidence            99999999999999999999987533

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-41  Score=323.92  Aligned_cols=192  Identities=10%  Similarity=0.094  Sum_probs=157.9

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ..++.+..+..|+....+....+. |..+|.+++|+| +++|++++.|++|++||+.+++.+..+. +...|++++|+|+
T Consensus        33 Asgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~  109 (902)
T 2oaj_A           33 AIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS  109 (902)
T ss_dssp             EEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT
T ss_pred             EEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC
Confidence            345567788889988877766654 888999999999 8899999999999999999999988886 5678999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCce-----e-EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPV-----S-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      +++|++|+.||.|++||+.+....  ....     . ....+|.+.|.+++|+|++...+++|+.||.| +||+++++..
T Consensus       110 g~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~  186 (902)
T 2oaj_A          110 LDWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK  186 (902)
T ss_dssp             CSEEEEEETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence            999999999999999999874410  0000     0 23467899999999999755789999999999 9999999888


Q ss_pred             EEeecc-------------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522          195 SVFGGE-------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  239 (388)
Q Consensus       195 ~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  239 (388)
                      ..+...             ....|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus       187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTC
T ss_pred             EEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Confidence            777422             0122457899999999 7899999999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.9e-41  Score=283.41  Aligned_cols=268  Identities=22%  Similarity=0.412  Sum_probs=236.3

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ...+.+.....|+....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+
T Consensus        39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  118 (312)
T 4ery_A           39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ  118 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            34556778888999989999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      +++|++|+.||.|++||+.++.       ....+..|..+|.+++|+|++ .++++++.||.|++||+++++....+.  
T Consensus       119 ~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~--  188 (312)
T 4ery_A          119 SNLIVSGSFDESVRIWDVKTGK-------CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLI--  188 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred             CCEEEEEeCCCcEEEEECCCCE-------EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEe--
Confidence            9999999999999999998754       567788999999999999986 689999999999999999988777653  


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeE--EEEc-cCCCEEEEeeCCCcEEEE
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT--VKFF-PDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~--~~~~-~~~~~l~~~~~dg~i~i~  277 (388)
                        ..+...+..++|+| +++++++++.||.|++||+++. +.+..+.+|.....+  ..++ +++.+|++|+.||.|++|
T Consensus       189 --~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw  264 (312)
T 4ery_A          189 --DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW  264 (312)
T ss_dssp             --CSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred             --ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence              45667899999999 8899999999999999999987 777888888765433  2343 578999999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe--cCCcEEEEEcc
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL  327 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~  327 (388)
                      |+.+++.+..+..     +...|.+++|+|+++++++++  .|+.|++|+..
T Consensus       265 d~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          265 NLQTKEIVQKLQG-----HTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ETTTCCEEEEECC-----CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ECCCchhhhhhhc-----cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9999988877744     344699999999999999987  69999999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.2e-41  Score=282.22  Aligned_cols=259  Identities=18%  Similarity=0.230  Sum_probs=210.8

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCC
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQ  181 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg  181 (388)
                      ..+.+|...|.+++|+|+|++|++|+.|+.|++|++....     ......+.+|.++|.+++|+++ .+.+|++|+.||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            3467799999999999999999999999999999997532     1256788999999999999864 247899999999


Q ss_pred             eEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCc-ceEEEecccCCeeEEE
Q 016522          182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVK  257 (388)
Q Consensus       182 ~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~  257 (388)
                      +|++||++++.  ....+     ..|...|.+++|+|.. +.+|++++.||.|++||++.... ....+.+|...|.+++
T Consensus        78 ~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred             EEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence            99999998874  34444     5789999999999942 78999999999999999987532 2467788999999999


Q ss_pred             EccC-------------CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEecCCcE
Q 016522          258 FFPD-------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDC  321 (388)
Q Consensus       258 ~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i  321 (388)
                      |+|+             +++|++|+.|+.|++||++++......... ...|...|.+++|+|++   .+|++++.|+.|
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence            9996             579999999999999999876622111110 02355579999999985   799999999999


Q ss_pred             EEEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          322 YVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       322 ~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++||+....   ....+.  ...|...|.+++|+|+|++|++++.||.|+||....
T Consensus       232 ~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEEeCCCCCccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999987642   111221  146788999999999999999999999999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-40  Score=291.21  Aligned_cols=269  Identities=19%  Similarity=0.306  Sum_probs=224.6

Q ss_pred             CCCcccCCCCceeeeccccccC------------------CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAG------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP  108 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~------------------~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~  108 (388)
                      .....|+......+..+.+|..                  .|++++|+|++++|++|+.||+|++||+.+++.+..+..|
T Consensus        85 ~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  164 (393)
T 1erj_A           85 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH  164 (393)
T ss_dssp             SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence            4556677777777777766643                  3999999999999999999999999999999999999999


Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ...|.+++|+|++++|++++.|+.|++||+.++.       ....+ .+...+.+++|+|..+.++++|+.||.|++||+
T Consensus       165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~  236 (393)
T 1erj_A          165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS  236 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            9999999999999999999999999999998754       33333 356789999999944578999999999999999


Q ss_pred             CCCceEEEeeccc--ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-----------cceEEEecccCCeeE
Q 016522          189 TTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------RAVRTFHGHEGDVNT  255 (388)
Q Consensus       189 ~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~  255 (388)
                      +++.....+....  ..+|...|.+++|+| ++.+|++|+.||.|++||++...           .....+.+|...|.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          237 ETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            9988776653211  146889999999999 88999999999999999997531           245567889999999


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC------CCCEEEEEecCCcEEEEEcccc
Q 016522          256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------SGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      ++|+|++.+|++|+.||.|++||+.+++.+..+..     |...|.+++|++      ++++|++|+.||.|++|++...
T Consensus       316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999999999999999999999999998877754     334599999876      6889999999999999997653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-41  Score=288.28  Aligned_cols=255  Identities=18%  Similarity=0.237  Sum_probs=206.0

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF  136 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw  136 (388)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3567999999999999999999999999999999998765  4577889999999999986  48999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      |++++.     ......+.+|...|.+++|+|++ ..+|++|+.||.|++||++.+......  .....|...+.+++|+
T Consensus        87 d~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           87 REENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEEC
T ss_pred             ECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEc
Confidence            998642     22456678899999999999973 368999999999999999876432211  1125788899999999


Q ss_pred             CCC----------------CcEEEEeeCCCceEEEECCCCC--cceEEEecccCCeeEEEEccCC----CEEEEeeCCCc
Q 016522          216 GSN----------------SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGT  273 (388)
Q Consensus       216 ~~~----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~  273 (388)
                      |..                +.+|++|+.|+.|++||++...  .....+.+|...|.+++|+|++    .+|++++.||+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            842                4689999999999999997542  3566778999999999999986    88999999999


Q ss_pred             EEEEECCCCc----eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          274 CRLFDIRTGH----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       274 i~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      |++|++.+..    ....+..     +...|.+++|+|++++|++++.||.|++|+..
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999997632    1112211     23469999999999999999999999999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-40  Score=294.47  Aligned_cols=288  Identities=26%  Similarity=0.434  Sum_probs=250.2

Q ss_pred             cCCCCceeeeccccccCCe-eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           52 FGPTDLVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      |.....+....+.+|.+.| .++.  +++++|++|+.||+|++||+.+++.+..+..|...|.+++|+  ++++++|+.|
T Consensus       103 w~~~~~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d  178 (445)
T 2ovr_B          103 WRRGELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD  178 (445)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             ccCCCcceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCC
Confidence            3334455667899999875 5555  468899999999999999999999999999999999999997  6799999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      |.|++||+.++.       ....+.+|...|.++.|++   ..+++|+.||.|++||+.+++....+     ..|...+.
T Consensus       179 g~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~  243 (445)
T 2ovr_B          179 RTLKVWNAETGE-------CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVR  243 (445)
T ss_dssp             SCEEEEETTTTE-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEE-----ECCSSCEE
T ss_pred             CeEEEEECCcCc-------EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEE-----cCCcccEE
Confidence            999999998754       6778889999999999963   56999999999999999999988888     68999999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      ++++   ++.++++|+.||.|++||+++. ..+..+.+|...|.+++|  ++.++++++.||.|++||+++++....+..
T Consensus       244 ~~~~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          244 CVQY---DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG  317 (445)
T ss_dssp             EEEE---CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEE---CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence            9998   4578999999999999999987 788889999999999999  788999999999999999999988877744


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      +     ...+.++.+  +++++++|+.||.|++||+.+++.+..+... ..|...|++++|+  +.+|++|+.||.|++|
T Consensus       318 ~-----~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          318 H-----QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFN--KNFVITSSDDGTVKLW  387 (445)
T ss_dssp             C-----CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             C-----cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence            3     334777776  5679999999999999999999988887321 2488999999996  5799999999999999


Q ss_pred             ccce
Q 016522          371 LHYY  374 (388)
Q Consensus       371 ~~~~  374 (388)
                      +...
T Consensus       388 d~~~  391 (445)
T 2ovr_B          388 DLKT  391 (445)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=289.58  Aligned_cols=262  Identities=18%  Similarity=0.228  Sum_probs=221.9

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVC  133 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i  133 (388)
                      ++...+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++....+..|...|.+++|+++  +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4567889999999999999999999999999999999997  55677788899999999999987  9999999999999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVL  210 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~  210 (388)
                      ++||+.++.     ......+..|...|.+++|+|+. +.++++++.||.|++||+.++..  ...+     ..|...|.
T Consensus        82 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~~~v~  151 (379)
T 3jrp_A           82 LIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVN  151 (379)
T ss_dssp             EEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-----ECCTTCEE
T ss_pred             EEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-----cCCCCceE
Confidence            999998743     22556777899999999999982 36899999999999999998743  2333     57889999


Q ss_pred             EEEeeCC------------CCcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEccC---CCEEEEeeCCC
Q 016522          211 SVSISGS------------NSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDG  272 (388)
Q Consensus       211 ~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg  272 (388)
                      +++|+|.            ++.++++++.||.|++||++....   ....+.+|...|.+++|+|+   +++|++++.||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            9999985            588999999999999999986632   44577789999999999999   89999999999


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      .|++||++++.............+...+.+++|+|++++|++++.||.|++|++...
T Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            999999998754333333233345567999999999999999999999999998743

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-40  Score=316.83  Aligned_cols=319  Identities=12%  Similarity=0.157  Sum_probs=230.9

Q ss_pred             ccccCCCCCcccCCCCceee-----------eccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC
Q 016522           41 YSRSQGRAPVSFGPTDLVCC-----------RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP  108 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~-----------~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~  108 (388)
                      ..+..+..+..|+....++.           ..+.+|.++|++++|+|+ +..|++|+.||.| +||+.+++....+..+
T Consensus       114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~  192 (902)
T 2oaj_A          114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE  192 (902)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred             EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence            34456677888888776653           456889999999999996 4789999999999 9999999888877655


Q ss_pred             ------------------CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---c------------
Q 016522          109 ------------------CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---S------------  155 (388)
Q Consensus       109 ------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~------------  155 (388)
                                        ...|.+++|+|+|++|++|+.||.|++||+.+++..     ..+.+   .            
T Consensus       193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~-----~~r~l~~~~~~~~~~~~~~~~  267 (902)
T 2oaj_A          193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI-----MARTVFETEINVPQPDYIRDS  267 (902)
T ss_dssp             BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE-----EEECSSCSCTTSCCTTCCCCC
T ss_pred             cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-----EEEeecccccCCCCCcCCCCC
Confidence                              467999999999999999999999999999875410     00011   0            


Q ss_pred             -ccccceEEEEEEeC----CCceEEEeeC---------------------------------------------------
Q 016522          156 -GHKGYVSCCQYVPD----EDTHLITSSG---------------------------------------------------  179 (388)
Q Consensus       156 -~~~~~v~~~~~~~~----~~~~l~~~~~---------------------------------------------------  179 (388)
                       .|...|.+++|++.    +..++++|+.                                                   
T Consensus       268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~  347 (902)
T 2oaj_A          268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVN  347 (902)
T ss_dssp             SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEE
T ss_pred             ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEE
Confidence             13446777777542    1134444433                                                   


Q ss_pred             -------------------------CCeEEEEecCCCceEEEee--ccc-------------------------------
Q 016522          180 -------------------------DQTCVLWDITTGLRTSVFG--GEF-------------------------------  201 (388)
Q Consensus       180 -------------------------dg~v~i~d~~~~~~~~~~~--~~~-------------------------------  201 (388)
                                               ||.|++||+.++.......  ...                               
T Consensus       348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~  427 (902)
T 2oaj_A          348 ILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK  427 (902)
T ss_dssp             EEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC
T ss_pred             EEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC
Confidence                                     3444444443332111000  000                               


Q ss_pred             ---ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEE--e-----cccCCeeEEEEccCCCEEEEe
Q 016522          202 ---QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTF--H-----GHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       202 ---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~--~-----~~~~~i~~~~~~~~~~~l~~~  268 (388)
                         ..+|...+.+++|+| ++++|++|+.||+|++||+..+...   ....  .     +|...|.+++|+|++++||+|
T Consensus       428 ~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsg  506 (902)
T 2oaj_A          428 DYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVS  506 (902)
T ss_dssp             CCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEE
T ss_pred             CCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEE
Confidence               012223333444566 7889999999999999999876211   1111  1     788899999999999999999


Q ss_pred             eCCCcEEEEECCCCce---------------------------------------------eeEeeeccCCCCCCCeEEE
Q 016522          269 SDDGTCRLFDIRTGHQ---------------------------------------------LQVYYQQHGENEIPHVTSI  303 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~---------------------------------------------~~~~~~~~~~~~~~~i~~~  303 (388)
                      +.||+|++||+.+++.                                             +..+     ..+...|+++
T Consensus       507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-----~~h~~~V~sv  581 (902)
T 2oaj_A          507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-----HANKGKTSAI  581 (902)
T ss_dssp             ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-----CCCSCSEEEE
T ss_pred             ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-----EcCCCcEEEE
Confidence            9999999999987631                                             1122     2355679999


Q ss_pred             EecCCCCEEEEEecCCcEEEEEcccceEEe--eccCCCCCcCCCeeEEEEC-----CCC---CeEEEccCCCeEEEecc
Q 016522          304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGSLQNSHEGRITCLGLS-----ADG---SALCTGSWDTNLKVSLH  372 (388)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~-----~~~---~~l~s~~~dg~v~iw~~  372 (388)
                      +|+|+| +||+|+.|++|++||+.+...+.  .+..+..+|.+.|++++|+     |||   ++|++|+.||+|++|+.
T Consensus       582 afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          582 NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            999999 99999999999999998887764  2211112899999999999     885   89999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-39  Score=286.16  Aligned_cols=272  Identities=15%  Similarity=0.217  Sum_probs=232.1

Q ss_pred             CCCCCcccCCCCceeeecccc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           45 QGRAPVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      .+..+..|+....+....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|  ++++
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~  188 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHV  188 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTE
T ss_pred             CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCE
Confidence            455667788888777777766 8999999999999999999999999999999999999999999999999999  5679


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      +++|+.||.|++||+....      .....+.+|.+.|.+++|+|++ .++++++.||.|++||++++.....+     .
T Consensus       189 l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-----~  256 (401)
T 4aez_A          189 LSSGSRSGAIHHHDVRIAN------HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTK-----T  256 (401)
T ss_dssp             EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEE-----C
T ss_pred             EEEEcCCCCEEEEecccCc------ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEe-----c
Confidence            9999999999999998533      2567788999999999999986 78999999999999999999888887     6


Q ss_pred             CCccCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE--eeCCCcEEEEEC
Q 016522          204 GHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT--GSDDGTCRLFDI  279 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~  279 (388)
                      .|...|.+++|+|.+..++++++  .||.|++||++++ ..+..+. +...|.+++|+|+++++++  |+.||.|++||+
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            89999999999997778888865  8999999999987 6666665 6778999999999999999  448999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      .++........   ..+...|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus       335 ~~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          335 SSSGLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             ETTEEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             CCccceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            98766555432   234456999999999999999999999999999998877654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.7e-40  Score=313.32  Aligned_cols=313  Identities=20%  Similarity=0.255  Sum_probs=263.5

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      ....++.+..|+....+....+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|++++|+|++
T Consensus        30 ~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ++|++++.||.|++|++.++.      .....+.+|...|.+++|+|+++..+++++.||.|++||+.++.....+.   
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---  180 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---  180 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE---
T ss_pred             CEEEEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe---
Confidence            999999999999999998642      25677889999999999999434789999999999999998887766663   


Q ss_pred             ccCCccCeEEEEeeCC-CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522          202 QSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  280 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  280 (388)
                       ..+...+.+++|+|. ++.++++++.||.|++||++.. ..+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       181 -~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             -CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             -cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence             345588999999973 6779999999999999999887 7788889999999999999999999999999999999999


Q ss_pred             CCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcEEEEEcccce----------EEeeccC-----------
Q 016522          281 TGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAK----------VVLNLGS-----------  337 (388)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~-----------  337 (388)
                      +++....+....     ..+.+++|+|++.  +++++ .++.+.+|++....          .+.....           
T Consensus       259 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  332 (814)
T 3mkq_A          259 TYKVEKTLNVGL-----ERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV  332 (814)
T ss_dssp             TCSEEEEECCSS-----SSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEE
T ss_pred             CCcEEEEeecCC-----CcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeee
Confidence            998887775433     3599999999987  45555 56678888865432          2221000           


Q ss_pred             ------------------CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          338 ------------------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       338 ------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                                        ....+...+.+++|+|+|++|++++ ||.+.+|..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          333 IRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             CCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             cccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence                              0022445678999999999888888 888999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.1e-40  Score=287.35  Aligned_cols=279  Identities=13%  Similarity=0.118  Sum_probs=236.2

Q ss_pred             ccccCCCCCcccCCCCce------eeeccccccCCeeEEEeCCC----C---CeEEEEeCCCcEEEEECCCCCe-----e
Q 016522           41 YSRSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSE----R---NRIVSASQDGRLIVWNALTSQK-----T  102 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~----~---~~l~t~~~dg~v~iwd~~~~~~-----~  102 (388)
                      ...+.+..+..|+.....      ....+.+|...|++++|+|+    +   ++|++++.||.|++||+.+++.     .
T Consensus        30 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  109 (397)
T 1sq9_A           30 VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF  109 (397)
T ss_dssp             EEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE
T ss_pred             EEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccc
Confidence            444567778889888776      78889999999999999999    9   9999999999999999998887     7


Q ss_pred             eEeeeC-----CccEEEEEEC----CCCCE-EEEeeCCCcEEEEeCCC------CCCCCCCCceeEEe-------ccccc
Q 016522          103 HAIKLP-----CAWVMTCAFS----PTGQS-VACGGLDSVCSIFNLNS------PTDKDGNLPVSRML-------SGHKG  159 (388)
Q Consensus       103 ~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~-------~~~~~  159 (388)
                      ..+..|     ...|.+++|+    |++++ |++++.||.|++||+..      .....  +.....+       ..|..
T Consensus       110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  187 (397)
T 1sq9_A          110 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--WSPTLELQGTVESPMTPSQ  187 (397)
T ss_dssp             EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--CCCEEEEEEEECCSSSSCC
T ss_pred             eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--ccCcceeeeeeccccCCCC
Confidence            888888     5889999999    99999 99999999999999987      33111  1111244       45889


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC---C---ccCeEEEEeeCCCCcEEEEeeCC---Cc
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG---H---TADVLSVSISGSNSRMFVSGSCD---ST  230 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~l~~~~~d---g~  230 (388)
                      .|.+++|+|++  ++++++.||.|++||+++++....+     ..   |   ...+.+++|+| ++.+|++++.|   |.
T Consensus       188 ~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~  259 (397)
T 1sq9_A          188 FATSVDISERG--LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC  259 (397)
T ss_dssp             CCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred             CceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEEECC-CCCEEEEEecCCCCce
Confidence            99999999986  8999999999999999999888887     45   7   89999999999 78999999999   99


Q ss_pred             eEEEECCCCCcceEEEec-------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC-CCC
Q 016522          231 ARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENE  296 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~  296 (388)
                      |++||+++. ..+..+..             |...|.+++|+|++++|++++.||.|++||+++++.+..+..... ..+
T Consensus       260 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  338 (397)
T 1sq9_A          260 ITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  338 (397)
T ss_dssp             EEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             EEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc
Confidence            999999987 78888888             999999999999999999999999999999999988888762100 012


Q ss_pred             ---------------CCCeEEEEecCCC----------CEEEEEecCCcEEEEEcccce
Q 016522          297 ---------------IPHVTSIAFSISG----------RLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       297 ---------------~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~  330 (388)
                                     ...|.+++|+|++          ++|++++.||.|++||+.+++
T Consensus       339 ~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          339 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             GGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             hhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                           5679999999998          799999999999999998763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.9e-39  Score=284.16  Aligned_cols=294  Identities=16%  Similarity=0.171  Sum_probs=237.4

Q ss_pred             CeeEEEeCCCCCe-EEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCC
Q 016522           69 KVYSLDWTSERNR-IVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        69 ~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      ....++++|+... +++++.||.|++|++.+.    .....+..|...|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4556889987654 445789999999998664    33456778999999999999 99999999999999999998864


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                      ...........+.+|...|.+++|+|++..++++++.||.|++||+++++....+..   ..|...|.+++|+| ++.+|
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l  191 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSR-DGALI  191 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---TTCCSCEEEEEECT-TSSCE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---CCCCCceEEEEECC-CCCEE
Confidence            222112356778899999999999999767899999999999999999988777621   36889999999999 88999


Q ss_pred             EEeeCCCceEEEECCCCCcceEEE-ecccCC-eeEEEEccCCCEEEEe---eCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      ++++.||.|++||+++. ..+..+ ..|.+. +.++.|+|++.+|++|   +.|+.|++||++++........   ..+.
T Consensus       192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~  267 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE---LDTS  267 (402)
T ss_dssp             EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE---CCCC
T ss_pred             EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe---ccCC
Confidence            99999999999999987 667777 678776 8999999999999999   7999999999998765322222   1223


Q ss_pred             CCeEEEEecCCCCEEEE-EecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          298 PHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       298 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ..+.+++|+|++++|++ |+.||.|++||+.+++. +..+..  ..|...|.+++|+|++.++++  .|+.+++|....
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            35899999999998865 55799999999998773 333321  136689999999999988765  466999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-39  Score=303.54  Aligned_cols=274  Identities=22%  Similarity=0.377  Sum_probs=228.4

Q ss_pred             ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  115 (388)
                      .+.+.+..+..|+...     ....+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++.....+..|...|.++
T Consensus       399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~  478 (694)
T 3dm0_A          399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV  478 (694)
T ss_dssp             EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence            3455677788887653     34567899999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceE
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      +|+|++++|++|+.|+.|++||.....    .........+|...|.+++|+|++. ..+++++.|+.|++||+++++..
T Consensus       479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          479 AFSLDNRQIVSASRDRTIKLWNTLGEC----KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEeCCCCEEEEEeCCCEEEEEECCCCc----ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            999999999999999999999986522    0001112247889999999999763 57999999999999999999888


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                      ..+     ..|...|.+++|+| ++++|++|+.||.|++||++++ +.+..+. +...|.+++|+|++.++++++ ++.|
T Consensus       555 ~~~-----~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i  625 (694)
T 3dm0_A          555 STL-----AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGI  625 (694)
T ss_dssp             EEE-----CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEE
T ss_pred             EEE-----cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCE
Confidence            888     78999999999999 8899999999999999999987 5555554 456799999999998887765 5669


Q ss_pred             EEEECCCCceeeEeeeccCC--------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          275 RLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      ++||++++..+..+......              .....+++++|+|+|++|++|+.||.|++||+.
T Consensus       626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99999998877665432110              111237899999999999999999999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-40  Score=282.13  Aligned_cols=251  Identities=18%  Similarity=0.222  Sum_probs=202.9

Q ss_pred             EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCCe
Q 016522          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQT  182 (388)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~  182 (388)
                      .+..|...|.+++|+|+|++|++|+.|+.|++||+.++.     ......+.+|.+.|.+++|+++ .+.+|++|+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            346799999999999999999999999999999997642     1245678899999999999863 2468999999999


Q ss_pred             EEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEE
Q 016522          183 CVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVK  257 (388)
Q Consensus       183 v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~  257 (388)
                      |++||++++.  ....+     ..|...|.+++|+|.. +.+|++|+.||.|++||++....  ....+.+|...|.+++
T Consensus        83 v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             EEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             EEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            9999999874  44445     6899999999999942 78999999999999999986522  2345567899999999


Q ss_pred             EccC-----------------CCEEEEeeCCCcEEEEECCCCc---eeeEeeeccCCCCCCCeEEEEecCCC----CEEE
Q 016522          258 FFPD-----------------GNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG----RLLF  313 (388)
Q Consensus       258 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~  313 (388)
                      |+|+                 +++|++|+.|+.|++||++...   ....+     ..|...|.+++|+|++    .+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~h~~~V~~v~~sp~~~~~~~~la  232 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EAHSDWVRDVAWAPSIGLPTSTIA  232 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BCCSSCEEEEECCCCSSCSCCEEE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----ccCCCceEEEEecCCCCCCCceEE
Confidence            9997                 4789999999999999997553   22222     2355579999999987    7999


Q ss_pred             EEecCCcEEEEEcccce----EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          314 AGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       314 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +++.||+|++||+.+..    ....+    ..|...|.+++|+|++++|++|+.||.|++|...
T Consensus       233 s~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          233 SCSQDGRVFIWTCDDASSNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEETTCEEEEEECSSTTCCCCBCCEE----EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEcCCCeEEEEEccCccccchhhhhh----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999999987621    11122    4678899999999999999999999999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-40  Score=284.16  Aligned_cols=273  Identities=16%  Similarity=0.233  Sum_probs=225.9

Q ss_pred             cCCCCCcccCCCCceeeecccc-----ccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQG-----HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT  114 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  114 (388)
                      ..+..+..|+....+.+..+..     |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+..|...|.+
T Consensus        41 ~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~  120 (366)
T 3k26_A           41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE  120 (366)
T ss_dssp             EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEE
T ss_pred             CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEE
Confidence            3345677888887777666665     4577999999998    669999999999999999999999999999999999


Q ss_pred             EEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          115 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       115 ~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      ++|+| ++.+|++|+.||.|++||+.++.       ....+   ..|...|.+++|+|++ .++++++.||.|++||+++
T Consensus       121 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          121 LKFHPRDPNLLLSVSKDHALRLWNIQTDT-------LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTTTE-------EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCS
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEEeecCe-------EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCC
Confidence            99999 99999999999999999998754       44555   6899999999999986 6899999999999999987


Q ss_pred             CceEEEeec-----------------------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc------
Q 016522          191 GLRTSVFGG-----------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------  241 (388)
Q Consensus       191 ~~~~~~~~~-----------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------  241 (388)
                      ++....+..                       .....|...|.+++|+   ++++++++.||.|++||++....      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccc
Confidence            654332210                       0012388999999998   46999999999999999987632      


Q ss_pred             -------ceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEe-eeccCCCCCCCeEEEEecCCCCE
Q 016522          242 -------AVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       242 -------~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  311 (388)
                             .+..+..|...|.+++|+|+  +++|++++.||.|++||+.+++..... .......+...|++++|+|++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  349 (366)
T 3k26_A          270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI  349 (366)
T ss_dssp             TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe
Confidence                   36777889999999999999  999999999999999999987654311 11111222457999999999999


Q ss_pred             EEEEecCCcEEEEEcc
Q 016522          312 LFAGYSNGDCYVWDTL  327 (388)
Q Consensus       312 l~~~~~dg~i~i~d~~  327 (388)
                      |++++.||.|++||+.
T Consensus       350 l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          350 LIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEETTSEEEEEEC-
T ss_pred             EEEEeCCCEEEEEEec
Confidence            9999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-38  Score=277.01  Aligned_cols=262  Identities=18%  Similarity=0.244  Sum_probs=216.5

Q ss_pred             CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEe
Q 016522           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITS  177 (388)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~  177 (388)
                      |+.+..+.+|...|.+++|+|++++|++|+.||.|++|++....     ......+.+|...|++++|+++. ..+|+++
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            34567789999999999999999999999999999999997422     23566788999999999998761 3789999


Q ss_pred             eCCCeEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC-cceEEEecccCC
Q 016522          178 SGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGD  252 (388)
Q Consensus       178 ~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~  252 (388)
                      +.||.|++||+.++.  ....+     ..|...|.+++|+| +  +.++++++.||.|++||++... .....+..|...
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             ccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            999999999999986  55555     67899999999999 5  8899999999999999998763 244567789999


Q ss_pred             eeEEEEcc-------------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC---CCEEEEEe
Q 016522          253 VNTVKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGY  316 (388)
Q Consensus       253 i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~  316 (388)
                      |.+++|+|             ++.+|++++.||.|++||++++.......... ..+...|.+++|+|+   +++|++++
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEe
Confidence            99999999             69999999999999999998776443222111 234557999999999   89999999


Q ss_pred             cCCcEEEEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          317 SNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       317 ~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .||.|++||+.++.   ....+.  ...|...|++++|+|++++|++++.||.|++|+...
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            99999999998863   112221  145889999999999999999999999999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.4e-38  Score=268.33  Aligned_cols=275  Identities=23%  Similarity=0.390  Sum_probs=233.9

Q ss_pred             ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  115 (388)
                      .+.+.+..+..|+...     ..+.+.+.+|.+.|.+++|+|++++|++++.|+.|++|+............+...+..+
T Consensus        55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  134 (340)
T 4aow_A           55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV  134 (340)
T ss_dssp             EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE
Confidence            3456778888898653     34677899999999999999999999999999999999999999888888888999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceE
Q 016522          116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      .+++++.+|++++.|+.+++||.....      .......+|...+.+++|++++. .++++++.|+.|++||+++++..
T Consensus       135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  208 (340)
T 4aow_A          135 AFSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK  208 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence            999999999999999999999987633      23455678899999999998753 46789999999999999999998


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                      ..+     .+|...|++++|+| ++++|++|+.||.|++||++.. ..+..+.. ...+.+++|+|++. +++++.|+.|
T Consensus       209 ~~~-----~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i  279 (340)
T 4aow_A          209 TNH-----IGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRY-WLCAATGPSI  279 (340)
T ss_dssp             EEE-----CCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEE
T ss_pred             eEe-----cCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeeeecC-CceEEeeecCCCCc-eeeccCCCEE
Confidence            888     78999999999999 8899999999999999999987 66666664 56899999999876 5556679999


Q ss_pred             EEEECCCCceeeEeeec----cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          275 RLFDIRTGHQLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      ++||++++.....+...    ....+...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus       280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999988776655432    112455679999999999999999999999999998875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=307.64  Aligned_cols=259  Identities=18%  Similarity=0.229  Sum_probs=217.0

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEE
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSI  135 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v  135 (388)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||+.  +++....+..|...|.+++|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45788999999999999999999999999999999997  55677788899999999999988  999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEE
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~  212 (388)
                      ||+.++.     ......+.+|...|.+++|+|++ +.++++|+.||.|++||++++..  ...+     ..|...|.++
T Consensus        82 wd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-----~~~~~~v~~l  151 (753)
T 3jro_A           82 WKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSA  151 (753)
T ss_dssp             EEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-----ECCSSCEEEE
T ss_pred             EECCCCc-----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-----ecCCCceEEE
Confidence            9998742     22556778899999999999982 36899999999999999988732  2333     5788999999


Q ss_pred             EeeCC------------CCcEEEEeeCCCceEEEECCCCC---cceEEEecccCCeeEEEEccC---CCEEEEeeCCCcE
Q 016522          213 SISGS------------NSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTC  274 (388)
Q Consensus       213 ~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i  274 (388)
                      +|+|.            ++.++++|+.||.|++||++...   .....+.+|..+|.+++|+|+   +.+|++++.||.|
T Consensus       152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence            99985            47899999999999999998763   345677889999999999999   8999999999999


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ++||++++.............+...+++++|+|+|+++++|+.||.|++||+..
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999875333222222234556799999999999999999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=269.21  Aligned_cols=276  Identities=16%  Similarity=0.192  Sum_probs=239.4

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      .....+..+..|+....+....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+
T Consensus        48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  126 (369)
T 3zwl_B           48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPC  126 (369)
T ss_dssp             EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccC
Confidence            344567788899999999999999999999999999999999999999999999999999988888 7788999999999


Q ss_pred             CCEEEEeeCC-----CcEEEEeCCCCCCCCC----CCceeEEeccccc--ceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          121 GQSVACGGLD-----SVCSIFNLNSPTDKDG----NLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       121 ~~~l~~~~~d-----g~i~vw~~~~~~~~~~----~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ++++++++.+     |.|.+|++........    .......+..|..  .+.+++|+|++ .++++++.||.|++||++
T Consensus       127 ~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~  205 (369)
T 3zwl_B          127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVS  205 (369)
T ss_dssp             SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETT
T ss_pred             CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECC
Confidence            9999999999     9999999987542110    0112334455665  89999999987 689999999999999999


Q ss_pred             C-CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          190 T-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       190 ~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      + ......+     ..|...|.+++|+| ++.+|++++.||.|++||+++. ..+..+. +...+.+++|+|++++++++
T Consensus       206 ~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          206 NNYEYVDSI-----DLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILG  277 (369)
T ss_dssp             TTTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred             CCcEeEEEE-----ecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEe
Confidence            8 6777776     67899999999999 8899999999999999999987 6666666 78899999999999999999


Q ss_pred             eCCC--------------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          269 SDDG--------------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       269 ~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      +.++              .+++||+.+++....+..+     ...|++++|+|++++|++++.||.|++|++..+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             ECCC-------------CEEEEEETTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             ecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-----cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            9988              8999999999988877543     34599999999999999999999999999977543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-40  Score=294.19  Aligned_cols=269  Identities=14%  Similarity=0.045  Sum_probs=206.9

Q ss_pred             ccCCeeEEEeCCCC---------CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           66 HAGKVYSLDWTSER---------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        66 h~~~v~~~~~~~~~---------~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      +.+.|.+|+|+|++         ++||+|+.++..                       -..+|+++.+++++.|+.|+||
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW  188 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF  188 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence            67899999999987         789998876420                       0136899999999999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCCceE-----------EEeecc
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRT-----------SVFGGE  200 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~~~~-----------~~~~~~  200 (388)
                      ++.++..   .......+..|.+.|.+++|+|++     ..+|++++.||+|++||+.++...           ..+   
T Consensus       189 d~~~~~~---~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l---  262 (524)
T 2j04_B          189 KMNTSTL---HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL---  262 (524)
T ss_dssp             EEETTTC---CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE---
T ss_pred             EccCCCC---CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE---
Confidence            9876431   111123456778899999999962     368999999999999999876421           123   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEE--EEccCC-CEEEEeeCCCcEEEE
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-NRFGTGSDDGTCRLF  277 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~  277 (388)
                        ..|...|++++|++ + ..|++|+.||+|++||++++..+...+.+|...|.++  +|+|++ .+|++++.|++|++|
T Consensus       263 --~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          263 --SLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             --CCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             --EcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence              57889999999997 4 4799999999999999997656667789999999999  578887 899999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  357 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (388)
                      |+++++....+.....   ...+.+++|+|+++.+++++.|+.|++||++++..+..+    .+|.+.|++++|+|+|++
T Consensus       339 D~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          339 NPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             CGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECSSCEEEEECCSSCCB
T ss_pred             ECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCCCceEEEEeCCCCCe
Confidence            9998877665543221   113788999999999999999999999999988876666    689999999999999999


Q ss_pred             EEEccCCCeEEEeccce
Q 016522          358 LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       358 l~s~~~dg~v~iw~~~~  374 (388)
                      |++|+.||+|++|+...
T Consensus       412 l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          412 VLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CEEEETTTEEECCBSCS
T ss_pred             EEEEECCCEEEEEechH
Confidence            99999999999998643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-38  Score=279.01  Aligned_cols=286  Identities=11%  Similarity=0.068  Sum_probs=231.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeC-----------------------------------
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLP-----------------------------------  108 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~-----------------------------------  108 (388)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3579999999999966665 57899999999998   55555432                                   


Q ss_pred             -------------------CccEEEEEECCCCCEE-EEeeCCCcEEEEeCC--CCCCCCCCCceeEEec--ccccceEEE
Q 016522          109 -------------------CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLN--SPTDKDGNLPVSRMLS--GHKGYVSCC  164 (388)
Q Consensus       109 -------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~  164 (388)
                                         ...|.+++|+|++++| ++|+.||.|++|++.  ++.       ....+.  .|...|.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEE
Confidence                               2269999999999996 889999999999998  433       344443  567899999


Q ss_pred             EEEeCCCceEEEeeCCCeEEEEecCCCceEE----EeecccccCCccCeEEEEeeCCC---CcEEEEeeCCCceEEEECC
Q 016522          165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSN---SRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~i~d~~  237 (388)
                      +|+|++ .+|++++.+|.|++|++.++....    .+     ..|...|.+++|+| +   +.+|++|+.|+.|++||++
T Consensus       156 ~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          156 SIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPI-----LGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCS-----EECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEecCCcccccccceee-----ecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence            999987 689999999999999998876543    33     57889999999999 6   8899999999999999998


Q ss_pred             CCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--------------------CCC
Q 016522          238 VASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------------------ENE  296 (388)
Q Consensus       238 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------~~~  296 (388)
                      .. ..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+.....                    ...
T Consensus       229 ~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          229 QC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             CT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            87 55555 66899999999999 999999999999999999999988877753210                    022


Q ss_pred             CCCeEEEEecCCCCEEEEEe-cCCcEEEEEc--ccc---eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------C
Q 016522          297 IPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------D  364 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d  364 (388)
                      ...+..++|+|++++|++++ .++.|++|++  ..+   +.+..+    ..| +.|.+++|+|++.++++++.      +
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~  381 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII----TFP-YNVISLSAHNDEFQVTLDNKESSGVQK  381 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE----ECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe----ccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence            34589999999999999998 8999999999  555   666666    456 88999999996544444443      5


Q ss_pred             CeEEEeccce
Q 016522          365 TNLKVSLHYY  374 (388)
Q Consensus       365 g~v~iw~~~~  374 (388)
                      ..|.+|....
T Consensus       382 ~~i~v~~~~~  391 (450)
T 2vdu_B          382 NFAKFIEYNL  391 (450)
T ss_dssp             CSEEEEEEET
T ss_pred             cceEEEEEEc
Confidence            5689987543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9e-38  Score=276.05  Aligned_cols=268  Identities=15%  Similarity=0.258  Sum_probs=227.4

Q ss_pred             CCCCcccCCCCceeeecc--ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           46 GRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      +..+..|+..+.++.+.+  .+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.+..+..|...+.++.+  ++..
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~  201 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI  201 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCE
Confidence            344566888877766654  578889999999999999999999999999999999999999999999998887  4679


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce----EEEeec
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGG  199 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~  199 (388)
                      |++|+.|+.+++|+.....      .....+.+|...+..+.+.|++ .++++++.|+.|++||..+++.    ....  
T Consensus       202 l~sgs~d~~i~~~d~~~~~------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~--  272 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF--  272 (420)
T ss_dssp             EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE--
T ss_pred             EEEEeCCCceeEeeecccc------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee--
Confidence            9999999999999988643      2567788999999999999987 6899999999999999987753    2333  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEE--eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEE
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVS--GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCR  275 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~  275 (388)
                         ..|...|.+++|+|.+..++++  |+.|+.|++||+.++ .....+.. ...+.++.|+|+++.+++++  .|+.|+
T Consensus       273 ---~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          273 ---TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLV  347 (420)
T ss_dssp             ---CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             ---cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEE
Confidence               6788999999999988888876  457999999999987 66666664 45789999999999988765  789999


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (388)
                      +||+.+++++..+..     |...|++++|+|+|++|++|+.|++|+|||+....+...
T Consensus       348 iwd~~~~~~v~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          348 IWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            999999999888743     445699999999999999999999999999876554433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.6e-38  Score=269.55  Aligned_cols=291  Identities=10%  Similarity=0.057  Sum_probs=214.3

Q ss_pred             CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcE
Q 016522           55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVC  133 (388)
Q Consensus        55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i  133 (388)
                      ...+++..+.+|.+.|++++|+|||++|++|+.+| +++||+.+++.......+  .+..+++.++++.+ ++++.|+.|
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEE
Confidence            44455667789999999999999999999998775 789999877665544333  47788888988877 567788999


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEE
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ++||..++.       ....+. +...|.++.++++.   ++++ .|+.|++||+.++ +.+..+.     .   ....+
T Consensus        84 ~iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~-----~---~~~~~  143 (355)
T 3vu4_A           84 HIWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDI-----R---FGGVC  143 (355)
T ss_dssp             EEEETTTTE-------EEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCE-----E---EEEEE
T ss_pred             EEEECCCCc-------EEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEec-----c---CCceE
Confidence            999998754       344444 66789999998742   4433 4789999999987 5554441     1   33445


Q ss_pred             EeeCCCCcEEEE--eeCCCceEEEECCCCC--------------cc-eEEEecccCCeeEEEEccCCCEEEEeeCCCc-E
Q 016522          213 SISGSNSRMFVS--GSCDSTARLWDTRVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-C  274 (388)
Q Consensus       213 ~~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i  274 (388)
                      ++++   .++++  |+.+|.|++||++...              .+ +..+.+|...|.+++|+|++++|++|+.||+ |
T Consensus       144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            5665   45554  7899999999998753              12 7788999999999999999999999999998 9


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE--eeccC---------------
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LNLGS---------------  337 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~---------------  337 (388)
                      ++||+++++.+..+...   .+...|.+++|+|++++|++++.|+.|++||+......  ..+..               
T Consensus       221 ~iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRG---LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             EEEETTTCCEEEEEECT---TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             EEEECCCCcEEEEEEcC---CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            99999999998887531   13346999999999999999999999999998754211  11100               


Q ss_pred             --CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          338 --LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       338 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                        +...+..+...++|++++++|++++.||.+++|....
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence              0011223457799999999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-38  Score=281.35  Aligned_cols=259  Identities=15%  Similarity=0.276  Sum_probs=220.7

Q ss_pred             eccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCC----------CCeeeEeeeCCccEEEEEECCCCC-EEEEee
Q 016522           61 RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGG  128 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  128 (388)
                      ..+.+|.+.|++++|+|+ +++|++++.||.|++||+.+          ......+..|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            456679999999999997 67999999999999999976          677888899999999999999998 999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCC
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGH  205 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~  205 (388)
                      .||.|++|++...............+.+|...|.+++|+|++..++++++.||.|++||++++   .....+     ..|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  276 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DAH  276 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-----ECC
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-----ecC
Confidence            999999999987432211122245677899999999999976789999999999999999987   455555     578


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCc-
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGH-  283 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-  283 (388)
                      ...|++++|+|.+..++++|+.||.|++||++....++..+..|...|.+++|+|++. +|++++.||.|++||+.... 
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            8999999999965568999999999999999986678899999999999999999885 69999999999999998732 


Q ss_pred             -------------eeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc
Q 016522          284 -------------QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       284 -------------~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  329 (388)
                                   .+...     ..+...|.+++|+|+++ +|++++.||.|++|++...
T Consensus       357 ~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                         22222     23445699999999999 9999999999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.2e-38  Score=274.65  Aligned_cols=278  Identities=19%  Similarity=0.184  Sum_probs=230.8

Q ss_pred             cccCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe--eeCCccEEEEEE
Q 016522           42 SRSQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAF  117 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~  117 (388)
                      ....+..+..|+....+  ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+  ..|...|.+++|
T Consensus        25 ~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  104 (372)
T 1k8k_C           25 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW  104 (372)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred             EEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE
Confidence            34456778889888776  88999999999999999999999999999999999999888754443  567888999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--------
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--------  189 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~--------  189 (388)
                      +|++++|++++.||.|++|++.....   ..........|...|.+++|+|++ .++++++.||.|++||++        
T Consensus       105 ~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~  180 (372)
T 1k8k_C          105 APNEKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERP  180 (372)
T ss_dssp             CTTSSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred             CCCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccc
Confidence            99999999999999999999987441   011233346789999999999986 689999999999999954        


Q ss_pred             ----------CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522          190 ----------TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  259 (388)
Q Consensus       190 ----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  259 (388)
                                .+.....+     ..|...+.+++|+| ++.+|++++.||.|++||+++. ..+..+..|..+|.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          181 APTPWGSKMPFGELMFES-----SSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             CCBTTBSCCCTTCEEEEC-----CCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEE
T ss_pred             cccccccccchhhheEec-----CCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEe
Confidence                      56677766     68899999999999 8889999999999999999987 7888899999999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCC--Cce--eeEe--------------------------e------eccCCCCCCCeEEE
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRT--GHQ--LQVY--------------------------Y------QQHGENEIPHVTSI  303 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~--------------------------~------~~~~~~~~~~i~~~  303 (388)
                      |++.+++++ .|+.|++|++.+  +..  ...+                          .      ......|...|+++
T Consensus       254 ~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  332 (372)
T 1k8k_C          254 TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI  332 (372)
T ss_dssp             ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE
T ss_pred             cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee
Confidence            999988887 899999999987  421  0000                          0      11112566789999


Q ss_pred             Eec-CCC---CEEEEEecCCcEEEEEcccceE
Q 016522          304 AFS-ISG---RLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       304 ~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      +|. ++|   .+|++|+.||.|++||+.+++.
T Consensus       333 ~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          333 SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             EEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             EEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence            966 666   8999999999999999977543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.3e-38  Score=273.52  Aligned_cols=266  Identities=17%  Similarity=0.191  Sum_probs=217.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccc--cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC---ccEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQ--GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMT  114 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~---~~v~~  114 (388)
                      ...+.+..+..|+....+....+.  +|.+.|.+++|+| ++++|++++.||.|++||+.+ .....+..+.   ..|.+
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~  168 (383)
T 3ei3_B           90 AVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC  168 (383)
T ss_dssp             EEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEE
T ss_pred             EEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEE
Confidence            334456778889888666665554  7999999999999 778999999999999999985 5555555443   77999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----
Q 016522          115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----  190 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----  190 (388)
                      ++|+|++++|++|+.||.|++||++. .       ....+..|...|.+++|+|++..++++++.|+.|++||+++    
T Consensus       169 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  240 (383)
T 3ei3_B          169 VDVSVSRQMLATGDSTGRLLLLGLDG-H-------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK  240 (383)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTS-C-------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred             EEECCCCCEEEEECCCCCEEEEECCC-C-------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence            99999999999999999999999943 2       56778899999999999999865899999999999999998    


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----------------CCe
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----------------GDV  253 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~i  253 (388)
                      +.....+      .|...|.+++|+|.++.+|++++.||.|++||+++. .....+..|.                 ..+
T Consensus       241 ~~~~~~~------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  313 (383)
T 3ei3_B          241 NSYIAEM------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQHLTPIKATWHPMYDL  313 (383)
T ss_dssp             TCEEEEE------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred             cceEEEe------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccccccccceEEeccCCCCc
Confidence            5555554      588999999999867789999999999999999987 4445555443                 234


Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ..++|+|++++  +++.||.|++||+.+++.+..+....   +...+..++|+|++++|++|+ ||.|++||+.+
T Consensus       314 ~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~---~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          314 IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN---AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT---BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC---CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            45667777766  77899999999999999887775421   234577889999999999996 99999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.4e-37  Score=275.44  Aligned_cols=258  Identities=23%  Similarity=0.325  Sum_probs=215.8

Q ss_pred             eEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEee
Q 016522          103 HAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (388)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|++......   .........+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344568889999999997 789999999999999999763111   1123456778899999999999999866899999


Q ss_pred             CCCeEEEEecCCCce-------EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecc
Q 016522          179 GDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGH  249 (388)
Q Consensus       179 ~dg~v~i~d~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~  249 (388)
                      .||.|++||+.++..       ...+     ..|...|.+++|+|.++.+|++++.||.|++||++...  ..+..+..|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIF-----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             CCCeEEEEeCCCCCCCCceeccceee-----cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            999999999987422       2233     58899999999999788999999999999999999763  567778899


Q ss_pred             cCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEc
Q 016522          250 EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDT  326 (388)
Q Consensus       250 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  326 (388)
                      ...|++++|+|++. +|++|+.||.|++||+++. ..+..+..     +...|.+++|+|+++ +|++++.||.|++||+
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999887 6889999999999999984 44555543     334699999999996 7999999999999999


Q ss_pred             cc--------------ceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEccCCCeEEEeccce
Q 016522          327 LL--------------AKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       327 ~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~  374 (388)
                      ..              .+.+..+    .+|...|++++|+|++. +|++++.||.|+||....
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFIH----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEEC----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCccccCccccccCCcceEEEc----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            87              2455555    68999999999999999 899999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=261.13  Aligned_cols=267  Identities=19%  Similarity=0.248  Sum_probs=230.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAF  117 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~  117 (388)
                      ...+.+.....|+....+....+.+|.+.|.+++|+|++++|++++.||.|++|++...   +....+..|...|.+++|
T Consensus        33 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (313)
T 3odt_A           33 ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF  112 (313)
T ss_dssp             EEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred             EEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence            45566788889999999999999999999999999999999999999999999998654   557778889999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522          118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  197 (388)
                        +++++++++.||.|++||...         ....+..|...+.++.|.|..+.++++++.||.|++||  .......+
T Consensus       113 --~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~  179 (313)
T 3odt_A          113 --QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF  179 (313)
T ss_dssp             --ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred             --cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence              678999999999999999322         66778889999999999994457899999999999999  44555555


Q ss_pred             ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522          198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  277 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  277 (388)
                      .    ..+...+.+++|+| ++. +++++.||.|++||+++. ..+..+..|...|.+++|+|++ .|++++.||.|++|
T Consensus       180 ~----~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw  251 (313)
T 3odt_A          180 S----GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW  251 (313)
T ss_dssp             C----SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred             e----ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence            2    33889999999998 666 889999999999999987 7888899999999999999999 58999999999999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (388)
                      |+++++....+..+.     ..+.+++|+|+++ +++++.||.|++||+.+++....
T Consensus       252 d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          252 SKENGSLKQVITLPA-----ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             CTTTCCEEEEEECSS-----SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             ECCCCceeEEEeccC-----ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            999999888775543     3599999999998 56788999999999988765544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=276.33  Aligned_cols=265  Identities=17%  Similarity=0.292  Sum_probs=231.1

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------  111 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------  111 (388)
                      ....+..+..|+ ........+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...          
T Consensus       125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (425)
T 1r5m_A          125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS  203 (425)
T ss_dssp             EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred             EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence            344566778888 667888899999999999999999999999999999999999999999888887776          


Q ss_pred             -----EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          112 -----VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       112 -----v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                           +.+++|++++ .+++++.+|.|++||+..+.       ....+..|...|.+++|+|++ .++++++.||.|++|
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-------PTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIW  274 (425)
T ss_dssp             --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-------CSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-------eeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence                 8999999875 58888999999999998754       556677899999999999987 689999999999999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      |+.+++....+     ..|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+..|...|.+++|+|++++|+
T Consensus       275 d~~~~~~~~~~-----~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          275 HGGNGNSQNCF-----YGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             CSSSBSCSEEE-----CCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             ECCCCccceEe-----cCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEE
Confidence            99998888887     67899999999999 55 9999999999999999887 78888889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCc--------------------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          267 TGSDDGTCRLFDIRTGH--------------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +++.||.|++||+.++.                    .+..+..+..   ...|++++|+|++++|++++.||.|++||+
T Consensus       347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEEccCCCceEEEEecCceEEEEee
Confidence            99999999999998877                    5555433211   116999999999999999999999999997


Q ss_pred             c
Q 016522          327 L  327 (388)
Q Consensus       327 ~  327 (388)
                      .
T Consensus       424 ~  424 (425)
T 1r5m_A          424 P  424 (425)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=269.97  Aligned_cols=270  Identities=13%  Similarity=0.129  Sum_probs=217.7

Q ss_pred             CCCCcccCCCCceeeec-cccccCCeeEEEeCCC---CCeEEEEeCCCcEEEEECCCCC-eeeEeeeCCccEEEEE----
Q 016522           46 GRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCA----  116 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~----  116 (388)
                      +.....|+....+.... ..+|.+.|.+++|+|+   +++|++|+.||.|++||+.+++ ....+..|...|.+++    
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG  122 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence            66778888877665443 3379999999999998   6999999999999999999988 8888999999999995    


Q ss_pred             --ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc----ceEEEE----EEeCCCceEEEeeCCCeEEEE
Q 016522          117 --FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----YVSCCQ----YVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       117 --~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~v~i~  186 (388)
                        |+|++++|++++.||.|++||+..+..      ....+..|.+    .+.+++    |+|++ .++++++.||.|++|
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLF  195 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEE
Confidence              578999999999999999999987541      2344444433    788888    56775 789999999999999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEE-----ecccCCeeEEEEc
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFF  259 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~~~~~~  259 (388)
                      |+++++....      ..|...+.+++|+|.  ++.++++++.||.|++||++.. .....+     .+|...|.+++|+
T Consensus       196 d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  268 (357)
T 3i2n_A          196 DLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHL  268 (357)
T ss_dssp             ETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEE
T ss_pred             ECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEEC
Confidence            9999887554      367889999999984  6788999999999999999876 444333     3899999999999


Q ss_pred             cCCC-EEEEeeCCCcEEEEECCCCceee----------------EeeeccCCCCCCCeEEEEecCCCCEEE-EEecCCcE
Q 016522          260 PDGN-RFGTGSDDGTCRLFDIRTGHQLQ----------------VYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDC  321 (388)
Q Consensus       260 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i  321 (388)
                      |++. +|++++.||.|++||++.+....                .+...  ..+...|++++|+|++++|+ +++.||.|
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence            9998 89999999999999998654321                11111  22445699999999999888 79999999


Q ss_pred             EEEEcccceE
Q 016522          322 YVWDTLLAKV  331 (388)
Q Consensus       322 ~i~d~~~~~~  331 (388)
                      ++||+.+.+.
T Consensus       347 ~iw~~~~~~~  356 (357)
T 3i2n_A          347 RVLIVTKLNK  356 (357)
T ss_dssp             EEEEECC---
T ss_pred             EEEECCCccc
Confidence            9999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-38  Score=276.46  Aligned_cols=263  Identities=10%  Similarity=0.071  Sum_probs=211.6

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      -...|.+++|+|||+++||++.|++|+  |...++   .+.+|...|.+++|+|+|       .++.+.+|+.+...   
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---   78 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---   78 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence            446899999999999999999999999  755554   447899999999999999       45655555543211   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc-----CeEEEEeeCCCCc
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DVLSVSISGSNSR  220 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~  220 (388)
                           ... ..|...|.+++|+|+| ..|++++.||.|++||...  .+..+     . |..     .+.+++|+| +++
T Consensus        79 -----~~~-~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-----~-~~~~~~~~sv~svafSP-DG~  142 (588)
T 2j04_A           79 -----LLN-SQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-----D-SKGNLSSRTYHCFEWNP-IES  142 (588)
T ss_dssp             -----SST-TSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-----C-CSSCSTTTCEEEEEECS-SSS
T ss_pred             -----Eee-cCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-----c-CCCccccccEEEEEEcC-CCC
Confidence                 111 1457889999999997 6799999999999999544  44444     3 443     599999999 999


Q ss_pred             EEEEeeCCCceEEEECCCCCc------ceEEE----ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee---eE
Q 016522          221 MFVSGSCDSTARLWDTRVASR------AVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QV  287 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~  287 (388)
                      +|++|+.||+|++||+..+..      .+..+    .+|...|.+++|+|+|  +++++.|+.|++||+..+...   ..
T Consensus       143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t  220 (588)
T 2j04_A          143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM  220 (588)
T ss_dssp             CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred             EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence            999999999999999987631      25665    5677899999999999  888899999999999887742   23


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE--CCCCCeEEEccCCC
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDT  365 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg  365 (388)
                      +..    .+...|.+++|+  |..||+++ ++.|++||+.+++.....    .+|.+.|.+++|  +|++..|++++.||
T Consensus       221 L~~----~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          221 IQN----ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             EEC----CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             ecc----cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            321    123459999999  68999887 699999999988874333    479999999999  99999999999999


Q ss_pred             eEEEeccc
Q 016522          366 NLKVSLHY  373 (388)
Q Consensus       366 ~v~iw~~~  373 (388)
                      + ++|...
T Consensus       290 ~-klw~~d  296 (588)
T 2j04_A          290 Y-KVLLED  296 (588)
T ss_dssp             E-EEEESS
T ss_pred             C-EEEeec
Confidence            9 999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-38  Score=279.63  Aligned_cols=274  Identities=18%  Similarity=0.179  Sum_probs=213.2

Q ss_pred             cccCCCCCcccCCCCc--eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeee--CCccEEEEE
Q 016522           42 SRSQGRAPVSFGPTDL--VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCA  116 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~  116 (388)
                      .++.++.+..|+....  .....+.+|.+.|++|+|+| ++++|++|+.||+|++||+.++........  +...+.+++
T Consensus       137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD  216 (435)
T ss_dssp             EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred             EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence            4556778888987644  45567789999999999998 688999999999999999976544333322  334578999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      |+|++.+|++|+.||.|++||++..        ....+.+|...|.+++|+|++..++++|+.|+.|++||+++......
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            9999999999999999999998752        24567789999999999999878899999999999999988765443


Q ss_pred             eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC------CeeEEEEccCCCEEEEee-
Q 016522          197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------DVNTVKFFPDGNRFGTGS-  269 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~-  269 (388)
                      +..  ...|...|++++|+| ++.+|++++.||.|++||++.. .....+..|..      .+....|+|++.++++++ 
T Consensus       289 ~~~--~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          289 FLY--SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             CSB--CCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             EEE--eeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence            311  146889999999999 8899999999999999999987 55555555442      234556777777766654 


Q ss_pred             -----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE-EecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          270 -----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       270 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                                 .++.|++||..+++.+..+...    +...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus       365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~----~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP----ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                       2357999999999888776443    23357776 6999999999875 789999999887653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-38  Score=278.40  Aligned_cols=250  Identities=12%  Similarity=0.156  Sum_probs=200.7

Q ss_pred             EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522          104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (388)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  183 (388)
                      .+..+..+|.+++|+|++++|++|+.|+.|++|++.++.     ......+.+|...|.+++|+|++ .+|++++.||.|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v   79 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNA   79 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeE
Confidence            445567789999999999999999999999999998641     12556678899999999999996 689999999999


Q ss_pred             EEEecCCCc---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEec-ccCCeeEEE
Q 016522          184 VLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVK  257 (388)
Q Consensus       184 ~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~i~~~~  257 (388)
                      ++||+.++.   ....+     ..|...|.+++|+| ++++|++++.|+.|++||++....  ....+.. |...|.+++
T Consensus        80 ~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             EEC------CCCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             EEEEcCCCCceeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            999999876   44444     67999999999999 888999999999999999987632  4677777 999999999


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCCCce--------------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      |+|++++|++++.||.|++||++....              ........  .+...|.+++|+|++++|++++.||.|++
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            999999999999999999999863321              11111111  45567999999999999999999999999


Q ss_pred             EEcccceE----EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          324 WDTLLAKV----VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       324 ~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ||+.+++.    +..+    ..|...|.+++|+|++++|++|+.|+.+.+|.
T Consensus       232 wd~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          232 AYPSAPEQPPRALITV----KLSQLPLRSLLWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             CEECSTTSCEEECCCE----ECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred             EECCCCCCcceeeEee----cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence            99998876    4555    68999999999999999999998777774444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-38  Score=270.90  Aligned_cols=278  Identities=13%  Similarity=0.057  Sum_probs=217.1

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC--CCCCCc-e
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--KDGNLP-V  150 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~-~  150 (388)
                      .+.+++++|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.|++|+......  ...... .
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445678899999999999999999999888777  455778889888   99999999999998774210  000111 2


Q ss_pred             eEEecccccceEEEEEEe--CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          151 SRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      .....+|.+.|.+++|+|  ++ .++++++.||.|++||+++++......    ..+...+.+++|+| ++.+|++|+.|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~d  191 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPD  191 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTT
T ss_pred             EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCC
Confidence            223346778999999999  86 689999999999999999998866552    34556799999999 88999999999


Q ss_pred             CceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe--EEEEe
Q 016522          229 STARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAF  305 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~  305 (388)
                      |.|++||+++.......+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+.....  +...+  .+++|
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~  268 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDI  268 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEE
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--ccccccceEEEE
Confidence            99999999988444377887 999999999999999999999 55999999999876654432111  11112  46999


Q ss_pred             cCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC---CCCeEEEccCCCeEEEeccc
Q 016522          306 SISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +|+|++|++++. |+.+++|++.........        .++..++|.+   +...+++++.||.+.++...
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            999999999988 999999998655422221        5677888988   88899999999999998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-37  Score=269.94  Aligned_cols=271  Identities=17%  Similarity=0.232  Sum_probs=224.7

Q ss_pred             ccCCCCCcccCCCCc----eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCc
Q 016522           43 RSQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCA  110 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~  110 (388)
                      ...++....|+....    .....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+..|..
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~  132 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK  132 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence            455667777876443    34567889999999999999 8999999999999999999887       66788899999


Q ss_pred             cEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe--cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      .|.+++|+|++ .+|++++.||.|++||+.++.       ....+  ..|...|.+++|+|++ .+|++++.||.|++||
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd  204 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------AVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIE  204 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------EEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------ccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEe
Confidence            99999999998 699999999999999998754       55666  7899999999999986 6799999999999999


Q ss_pred             cCCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEe---eCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCC
Q 016522          188 ITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDG  262 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~  262 (388)
                      +++++....+.    ..|... +.++.|+| ++.++++|   +.|+.|++||++....+..... .|...+.+++|+|++
T Consensus       205 ~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  279 (402)
T 2aq5_A          205 PRKGTVVAEKD----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT  279 (402)
T ss_dssp             TTTTEEEEEEE----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT
T ss_pred             CCCCceeeeec----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC
Confidence            99998877762    245554 89999998 78899998   7899999999998755444443 577889999999999


Q ss_pred             CEEEE-eeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          263 NRFGT-GSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       263 ~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      ++|++ |+.||.|++||+.+++. +..+....   +...+.+++|+|++.++++  .++.+++|++.+++.
T Consensus       280 ~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          280 NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             TEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99875 55799999999998874 33333321   3346999999999998764  566999999988654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.6e-37  Score=271.43  Aligned_cols=277  Identities=24%  Similarity=0.459  Sum_probs=225.0

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      .+..+..+..|+..+.+....+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+  +
T Consensus       148 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~  223 (435)
T 1p22_A          148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--N  223 (435)
T ss_dssp             EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--T
T ss_pred             EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--C
Confidence            4456778889999999999999999999999999  67899999999999999999999999999999999999997  4


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ..+++|+.||.|++||+.++.    .......+.+|...|.+++|  + +.++++|+.||.|++||+++++.+..+    
T Consensus       224 ~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~--~-~~~l~s~~~dg~i~vwd~~~~~~~~~~----  292 (435)
T 1p22_A          224 GMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDF--D-DKYIVSASGDRTIKVWNTSTCEFVRTL----  292 (435)
T ss_dssp             TEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEE--E-TTEEEEEETTSEEEEEETTTCCEEEEE----
T ss_pred             CEEEEeeCCCcEEEEeCCCCC----CceeeeEecCCCCcEEEEEe--C-CCEEEEEeCCCeEEEEECCcCcEEEEE----
Confidence            599999999999999998754    12234677899999999999  3 368999999999999999999999888    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                       ..|...+.++.++   ++++++|+.||.|++||++++ ..+..+.+|...|.+++|  ++.+|++|+.||.|++||+.+
T Consensus       293 -~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          293 -NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             -ECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             -cCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence             6899999999985   468999999999999999987 788899999999999999  788999999999999999976


Q ss_pred             Cc---------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          282 GH---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       282 ~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      +.         ....+.     .+...|.+++|  ++.+|++|+.||.|++||+.+.......     ....+..++.|.
T Consensus       366 ~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~  433 (435)
T 1p22_A          366 ALDPRAPAGTLCLRTLV-----EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-----PPRSPSRTYTYI  433 (435)
T ss_dssp             HTSTTSCTTTTEEEEEC-----CCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------------------
T ss_pred             CCCccccccchheeecc-----CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-----CCCCCccceeee
Confidence            65         444443     34456999999  7789999999999999999877655443     233344555554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-38  Score=280.09  Aligned_cols=284  Identities=13%  Similarity=0.164  Sum_probs=225.1

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (388)
                      .|+|++..+++++      .|+ .+++.+..+ ..|...|++++|+| ++++|++|+.||.|++||+....... .....
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~  105 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSS  105 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCS
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-cccee
Confidence            3788888887765      388 567888888 88889999999999 99999999999999999987621110 11112


Q ss_pred             EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC---CCceEEEeeccc-----ccC--CccCeEEEE--eeCCCC
Q 016522          152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT---TGLRTSVFGGEF-----QSG--HTADVLSVS--ISGSNS  219 (388)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~---~~~~~~~~~~~~-----~~~--~~~~i~~~~--~~~~~~  219 (388)
                      ..+ .|...|.+++|+|++ .+|++++.||.|++||+.   +++.........     ...  +...+.++.  +++ ++
T Consensus       106 ~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (437)
T 3gre_A          106 LTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EK  182 (437)
T ss_dssp             EEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SC
T ss_pred             eec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CC
Confidence            222 589999999999986 689999999999999995   554443331100     011  556677777  445 78


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      .++++++.||.|++||+++. ..+..+..  |...|++++|+|++++|++|+.||.|++||+++++.+..+...    +.
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~  257 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG----DH  257 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT----TC
T ss_pred             CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC----CC
Confidence            89999999999999999987 77888887  8999999999999999999999999999999998887776432    22


Q ss_pred             CCeEEEEe----cCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--------------------C--CcCCCeeEEEE
Q 016522          298 PHVTSIAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--------------------N--SHEGRITCLGL  351 (388)
Q Consensus       298 ~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~--~~~~~v~~~~~  351 (388)
                      ..|.+++|    +|++.+|++|+.||.|++||+.+++.+..+....                    .  .|...|++++|
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            35999955    4568899999999999999999988777664110                    1  27778999999


Q ss_pred             CCCCCeEEEccCCCeEEEeccce
Q 016522          352 SADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       352 ~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      + ++++|++|+.||.|++|+...
T Consensus       338 ~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEEEETTC
T ss_pred             C-CceEEEecCCCCeEEEEECCC
Confidence            9 788999999999999999654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.9e-36  Score=265.83  Aligned_cols=289  Identities=13%  Similarity=0.126  Sum_probs=237.7

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-----EeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      .+....+..+. .+.+++|+|++.++++++.++.|++||+.+++...     .+..|...|.+++|++++.++++++.|+
T Consensus       113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            35666666554 46699999977788888889999999999998876     3346778899999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      .|++||+.++.       ....+..|...+.+++|+|++..++++++.|+.|++||+++++....+      .....+.+
T Consensus       192 ~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~~  258 (433)
T 3bws_A          192 AVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT------DKIGLPRG  258 (433)
T ss_dssp             EEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC------CCCSEEEE
T ss_pred             EEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe------cCCCCceE
Confidence            99999998754       566677888999999999998655567778999999999999887776      23456899


Q ss_pred             EEeeCCCCcEEEEee--------CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCC
Q 016522          212 VSISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~  282 (388)
                      ++|+| +++.+++++        .||.|++||+++. +....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.++
T Consensus       259 ~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          259 LLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            99999 777777776        5889999999876 444443 466688999999999755 66689999999999988


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---------------CCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                      +....+..      ...+.+++|+|+|+++++++.               ||.|++||+.+++.+..+    .. ...+.
T Consensus       336 ~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~-~~~~~  404 (433)
T 3bws_A          336 KVQKSIPV------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA-GNQPT  404 (433)
T ss_dssp             EEEEEEEC------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC-SSSEE
T ss_pred             cEEEEecC------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC-CCCCc
Confidence            87766642      224899999999999888876               579999999999988877    33 45799


Q ss_pred             EEEECCCCCeEEEccC-CCeEEEeccc
Q 016522          348 CLGLSADGSALCTGSW-DTNLKVSLHY  373 (388)
Q Consensus       348 ~~~~~~~~~~l~s~~~-dg~v~iw~~~  373 (388)
                      +++|+|+|++|++++. |+.|++|...
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9999999999988775 9999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=262.34  Aligned_cols=310  Identities=18%  Similarity=0.220  Sum_probs=217.0

Q ss_pred             cccCCCCCcccCCCCceeeeccc-------------cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeee
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQ-------------GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKL  107 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~-------------~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~  107 (388)
                      ....+..+..|+.........+.             +|.+.|.+++|+| ++++|++++.||.|++||+.+++....+. 
T Consensus        61 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  139 (408)
T 4a11_B           61 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-  139 (408)
T ss_dssp             EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             EEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-
Confidence            33456667778877666655553             6999999999999 77899999999999999999998887776 


Q ss_pred             CCccEEEEEECCCC---CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522          108 PCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV  184 (388)
Q Consensus       108 ~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  184 (388)
                      +...+.++.|++.+   .++++++.||.|++||+.++.       ....+..|...|.+++|+|++..++++++.||.|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-------CSHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            56679999998854   599999999999999998754       56678889999999999999866799999999999


Q ss_pred             EEecCCCc-eEEEeec----------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----
Q 016522          185 LWDITTGL-RTSVFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----  249 (388)
Q Consensus       185 i~d~~~~~-~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  249 (388)
                      +||++++. ....+..          .....|...|.+++|+| ++.+|++++.||.|++||+++.. .......+    
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~  290 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNN  290 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-BCCCCCCCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCc-cceecccccccc
Confidence            99998765 2222210          11146888999999999 88999999999999999999773 33222211    


Q ss_pred             -cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          250 -EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       250 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                       ...+........+..+++++.|+.|++||+.+++.+..+..     +...|++++|+|++++|++|+.||.|++||+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-----CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence             11222222233456677778899999999999998887754     344699999999999999999999999999999


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEeccc
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ++.+....    .+.   ....+.+ ....+.+++.|+.+++|...
T Consensus       366 ~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          366 YEPVPDDD----ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ----------------------------------------------
T ss_pred             CCccCCCC----ceE---eccccccccceeecccCccCceeecCCc
Confidence            88776542    221   1122333 34456677789999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=250.83  Aligned_cols=268  Identities=15%  Similarity=0.222  Sum_probs=223.6

Q ss_pred             CCCCCcccCCCCceeeecc--ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           45 QGRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      .+..+..|+..+.++.+.+  .+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++.+  ++.
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~  120 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY  120 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC
Confidence            3566888999988877765  468889999999999999999999999999999999999999999988877654  567


Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      .+++++.++.+++|+.....      .....+.+|...+..+.+.+++ .++++++.||.|++||+++++....... ..
T Consensus       121 ~l~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~  192 (318)
T 4ggc_A          121 ILSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ-TF  192 (318)
T ss_dssp             EEEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSE-EE
T ss_pred             EEEEEecCCceEeeecCCCc------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCccccccee-ee
Confidence            99999999999999988643      3567788999999999999987 6899999999999999988653222111 11


Q ss_pred             cCCccCeEEEEeeCCCCcEE--EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEEEEE
Q 016522          203 SGHTADVLSVSISGSNSRMF--VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFD  278 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d  278 (388)
                      ..+...|.++.++|.+...+  ++++.++.|++||.+.. ... ....+...+..+.|+|++..+++++  .|+.|++||
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd  270 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK  270 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEE
Confidence            56788999999999666665  45678899999999866 333 3445778899999999999887654  799999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      +++++.+..+..     |...|++++|+|+|++|++|+.||+|+|||+...
T Consensus       271 ~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          271 YPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999888744     4456999999999999999999999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=271.65  Aligned_cols=260  Identities=21%  Similarity=0.350  Sum_probs=205.6

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC----CCCCCceeEEecccc------------cceEEEEEEeCCC
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED  171 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~  171 (388)
                      +...|++++|+|+|++|++|+.||.|++|++.....    ..........+.+|.            ..|.+++|+|+++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            457899999999999999999999999999987542    223344567788998            8899999999864


Q ss_pred             -ceEEEeeCCCeEEEEecCCCceEEE-----------------------------------eecccccCCccCeEEEEee
Q 016522          172 -THLITSSGDQTCVLWDITTGLRTSV-----------------------------------FGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       172 -~~l~~~~~dg~v~i~d~~~~~~~~~-----------------------------------~~~~~~~~~~~~i~~~~~~  215 (388)
                       .++++++.||.|++||+.++.....                                   ........|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             5799999999999999987543211                                   0001125799999999999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEE-------EecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCce---
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ---  284 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---  284 (388)
                      | ++++|++| .||.|++||++.....+..       +.+|...|.+++|+|++ ++|++++.||.|++||+++++.   
T Consensus       187 ~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          187 S-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             T-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             C-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9 88899998 7999999999854344442       45789999999999998 9999999999999999998876   


Q ss_pred             -eeEeeeccCCC-------CCCCeEEEEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCC----------
Q 016522          285 -LQVYYQQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGR----------  345 (388)
Q Consensus       285 -~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~----------  345 (388)
                       ...+.......       +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+    ..|...          
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHT
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccc
Confidence             45543322110       1126999999999999999998 9999999987 7766666    455432          


Q ss_pred             -----eeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          346 -----ITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       346 -----v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                           +..++|+|++++|++|+.||.|++|+...
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                 33499999999999999999999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=284.56  Aligned_cols=260  Identities=18%  Similarity=0.233  Sum_probs=212.8

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCC
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQ  181 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg  181 (388)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|++..+.     ......+.+|.+.|.+++|+|+. +.++++|+.||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            4567899999999999999999999999999999997432     23567788999999999999872 37899999999


Q ss_pred             eEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEE
Q 016522          182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTV  256 (388)
Q Consensus       182 ~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~  256 (388)
                      .|++||+.++.  ....+     ..|...|.+++|+| +  +.++++|+.||.|++||++... .....+.+|...|.++
T Consensus        78 ~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l  151 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (753)
T ss_dssp             CEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred             eEEEEECCCCcccccccc-----cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence            99999999986  44555     68999999999999 5  8899999999999999998762 3455677899999999


Q ss_pred             EEcc-------------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC---CCEEEEEecCCc
Q 016522          257 KFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGD  320 (388)
Q Consensus       257 ~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~  320 (388)
                      +|+|             ++.++++|+.||.|++||++++.......... ..+...|++++|+|+   ++++++|+.||.
T Consensus       152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            9999             58999999999999999998875332221111 234557999999999   899999999999


Q ss_pred             EEEEEcccceEEeec-cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          321 CYVWDTLLAKVVLNL-GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       321 i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |++||+.+++..... ......|...|++++|+|+|++|++|+.||.|++|+...
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999876421111 111156889999999999999999999999999999763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=267.05  Aligned_cols=271  Identities=10%  Similarity=0.083  Sum_probs=211.4

Q ss_pred             CCcccCCCCceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-----cEEEEEECCCC
Q 016522           48 APVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMTCAFSPTG  121 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~  121 (388)
                      ....|+-...+....+. +|...|.+++|+|+|++||+++.||.|++||...  .+..+. |..     .+.+++|+|+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           65 FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred             CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC
Confidence            33344444334333343 5688999999999999999999999999999544  555556 554     49999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE---
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---  194 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---  194 (388)
                      ++|++|+.||.|++|++.++......+-....+    .+|...|.+++|+|+|   +++++.|+.|++||+.++...   
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccce
Confidence            999999999999999998753111111134454    6788999999999986   889999999999999887732   


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE--ccCCCEEEEeeCCC
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDG  272 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg  272 (388)
                      ..+.    ..|...|.+++|+   ++.+++++ +++|++||+... .......+|...+..++|  +|++..|++++.||
T Consensus       219 ~tL~----~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          219 RMIQ----NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             EEEE----CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             eeec----ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            3331    3677899999998   37888887 699999999866 442333389999999999  99999999999999


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      + ++|...                     .++++|++..+++.  |+++++|+...+. ...+    . +...|.+++|+
T Consensus       290 ~-klw~~d---------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~----~-~~~~I~~va~S  339 (588)
T 2j04_A          290 Y-KVLLED---------------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY----E-TTLVIHGISLS  339 (588)
T ss_dssp             E-EEEESS---------------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS----C-CEEEEEEEEEC
T ss_pred             C-EEEeec---------------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee----c-cceEEEEEEEC
Confidence            9 999977                     14588999877765  8999999975554 2232    3 36779999999


Q ss_pred             CCCCeEEEccC
Q 016522          353 ADGSALCTGSW  363 (388)
Q Consensus       353 ~~~~~l~s~~~  363 (388)
                      |||+.+|+++.
T Consensus       340 PdG~~lA~~~~  350 (588)
T 2j04_A          340 PDGYSIAIVYD  350 (588)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.8e-36  Score=258.45  Aligned_cols=248  Identities=10%  Similarity=0.082  Sum_probs=194.4

Q ss_pred             eccccccCCeeEEEeCCCCCeEEEE-----------eCCCcEEEEECCCCCeeeEe---------eeCCccEEEEEECCC
Q 016522           61 RTLQGHAGKVYSLDWTSERNRIVSA-----------SQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPT  120 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l~t~-----------~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~  120 (388)
                      ..|.+|.+.|.++++++  +.+++|           +.|+.+++|++.+.......         ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            35788999999998764  466655           45778999998765432211         123456899999999


Q ss_pred             CCEEEEe--eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          121 GQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       121 ~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      |++++++  +.|+.|++||+.+..       ....+ .|.+.|.+++|+|+| .++++++. +.+.+|+..++.......
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~-------~~~~~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLT-------EKFEI-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTE-------EEEEE-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEeECCCCc-------EEEEe-CCCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeee
Confidence            9998654  478999999998754       34444 477889999999997 67888775 456777777776554431


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCC----ceEEEECCCCCc---ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                         ...|...+.+++|+| ++.++++++.|+    .+++|++.....   ....+.+|..+|++++|+|+|++||+|+.|
T Consensus       215 ---~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          215 ---DFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             ---CCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             ---cCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence               156888999999999 888999988887    688888875522   234567899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      +.|+|||+++++++..+..    .|...|++++|+|||++|++|+.|++|+|||+..
T Consensus       291 ~~V~iwd~~~~~~~~~~~~----gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQ----AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEETTTTEEEEEETT----SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEECCCCcEEEEecC----cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999988877633    3455799999999999999999999999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.3e-34  Score=238.70  Aligned_cols=303  Identities=16%  Similarity=0.167  Sum_probs=208.5

Q ss_pred             cCCCCceeeeccccccC----CeeEEEeCCCCC---eEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECCCC
Q 016522           52 FGPTDLVCCRTLQGHAG----KVYSLDWTSERN---RIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~----~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      .+|..++.+.+|+.-.+    .+.++-|-..+-   .+++++. ..|++|+..++   +++++...|..+|..+.+.|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (356)
T 2w18_A           20 INPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV   98 (356)
T ss_dssp             ----CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC
T ss_pred             cCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc
Confidence            46678888888887655    366677765443   6777775 58999999998   8899999999999999999976


Q ss_pred             CEEEEeeC-CC-cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee--CCCeEEEEec-CCCceEEE
Q 016522          122 QSVACGGL-DS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDI-TTGLRTSV  196 (388)
Q Consensus       122 ~~l~~~~~-dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~i~d~-~~~~~~~~  196 (388)
                      .-|++..- += .-.++.+--... ...........+|...|..+   ++ .+++.+++  .|+.|++|++ .+++.+..
T Consensus        99 ~~~~~~~~~~~~~~~v~sla~spd-~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s  173 (356)
T 2w18_A           99 YNLVCVALGNLEIREIRALFCSSD-DESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKEN  173 (356)
T ss_dssp             CSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEE
T ss_pred             cceeeeeeccccccceEEEEECCC-ccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeee
Confidence            44443321 11 111222211110 00111222224455455443   33 35555533  6999999999 44777666


Q ss_pred             eecccccCCccCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---CCeeEEEEccCCCEE------
Q 016522          197 FGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRF------  265 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------  265 (388)
                      +     ..|...+..++|++  .++.+|++++.|++|++||+.++ +.++.+.+|.   ..+.+++|+|+|.++      
T Consensus       174 ~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          174 Q-----FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             E-----EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred             e-----ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence            6     56777777777776  46799999999999999999988 7888887654   357778999999876      


Q ss_pred             ------EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522          266 ------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       266 ------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (388)
                            ++|+.|++|++||..+++.+..+.......+...+.+..+  ++.++++|+.|++|+|||+.+++.+.++    
T Consensus       248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL----  321 (356)
T 2w18_A          248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL----  321 (356)
T ss_dssp             ----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE----
T ss_pred             CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe----
Confidence                  5678899999999999988765532211222223443333  4789999999999999999999999998    


Q ss_pred             CCcCCCee-EEEECCCCCeEEEccCCCeEEEecc
Q 016522          340 NSHEGRIT-CLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       340 ~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .+|...+. +++|+|||++|++|+.|++|+||++
T Consensus       322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            67877655 6899999999999999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.7e-36  Score=263.01  Aligned_cols=290  Identities=15%  Similarity=0.142  Sum_probs=199.0

Q ss_pred             CeeEEEeC---CCCCeEEEEeCCCcEEEEECCCCC-------eeeE--eeeCCccEEEEEE-------------------
Q 016522           69 KVYSLDWT---SERNRIVSASQDGRLIVWNALTSQ-------KTHA--IKLPCAWVMTCAF-------------------  117 (388)
Q Consensus        69 ~v~~~~~~---~~~~~l~t~~~dg~v~iwd~~~~~-------~~~~--~~~~~~~v~~~~~-------------------  117 (388)
                      ...++.|.   |++..|++++.|+.|.+|+.....       ....  ...+...+..+.|                   
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            34556663   444445555567889999753211       0010  1112233444444                   


Q ss_pred             -CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe--------CCCceEEEeeCCCeEEEEec
Q 016522          118 -SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--------DEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       118 -~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~v~i~d~  188 (388)
                       .+++.++++++.|++|++||...+...  .......+.+|.+.|.+++|+|        ++ ++|++++.|++|++||+
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEEC
Confidence             345668999999999999999874311  0112334678999999999998        44 78999999999999999


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce------------------------E
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------R  244 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------~  244 (388)
                      .++.....+     ..|...+.+++|+|.+..+|++++.||+|++||++++....                        .
T Consensus       174 ~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          174 TDEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             ETTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             CCCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            988777766     67889999999999666789999999999999998762211                        1


Q ss_pred             EEecccCCeeEEEEc-cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------------CCCCCeEEEEecC--C
Q 016522          245 TFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPHVTSIAFSI--S  308 (388)
Q Consensus       245 ~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~--~  308 (388)
                      ...+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+......             ..........|+|  +
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            124577789999987 69999999999999999999877655444221111             0001112233433  3


Q ss_pred             CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522          309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS  370 (388)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw  370 (388)
                      +.++++|+.||.|++||+.+++....+    ..|..+|.+++|+|||++||+++.||.+.+.
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            446778888999999999988877666    5788899999999999999999987755443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-35  Score=253.78  Aligned_cols=248  Identities=9%  Similarity=0.065  Sum_probs=205.2

Q ss_pred             eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc-eEEEeeCCCeE
Q 016522          105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTC  183 (388)
Q Consensus       105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v  183 (388)
                      ...|...|.+++|+|++++|++++.||.|++|++.....    .........|...|.+++|+|++ . ++++++.||.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI   81 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence            346888999999999999999999999999999986431    11234556899999999999986 6 89999999999


Q ss_pred             EEEec-CCCceEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---------CCcceEEEecccC
Q 016522          184 VLWDI-TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEG  251 (388)
Q Consensus       184 ~i~d~-~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~  251 (388)
                      ++||+ .++.. ..+     ..  |...|.+++|+|  +.++++++.||.|++||++.         . .++..+. |..
T Consensus        82 ~~wd~~~~~~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~  151 (342)
T 1yfq_A           82 LKVDLIGSPSF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKN  151 (342)
T ss_dssp             EEECSSSSSSE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCC
T ss_pred             EEEEeccCCce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCC
Confidence            99999 87765 344     56  999999999998  78999999999999999986         4 4455555 888


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccc
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      .|.+++|+|++  +++++.|+.|++||+++ +........   ..+...+.+++|+| +++++++++.||.|++|++...
T Consensus       152 ~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          152 KIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             CEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            99999999887  99999999999999998 554322222   12334699999999 9999999999999999999876


Q ss_pred             ------eEEeeccCCCCCc---------CCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522          330 ------KVVLNLGSLQNSH---------EGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF  376 (388)
Q Consensus       330 ------~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~  376 (388)
                            +....+    ..|         ...|++++|+|++++|++|+.||.|++|+.....
T Consensus       227 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          227 GDDYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCSTTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             Ccccccccceee----ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence                  555555    344         4499999999999999999999999999976433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1e-33  Score=248.02  Aligned_cols=265  Identities=15%  Similarity=0.178  Sum_probs=218.4

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      ..+++++.|+.|++||+.+++....+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++       ....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe-------EEEEEECCC
Confidence            3678899999999999999999888887755 8999999999977 567789999999998754       445555444


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTR  237 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~  237 (388)
                       .+.+++|+|++..++++++.++.|++||+.+++....+      .+...+.+++|+| +++ ++++++.++.|++||+.
T Consensus        75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE------eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence             89999999998655567778899999999999887776      2345789999999 555 44788889999999998


Q ss_pred             CCCcceEEEecccCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      ++ +....+..+ ..+.+++|+|+++++ ++++.++.|++||+++++....+..      ...+.+++|+|++++|++++
T Consensus       147 ~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          147 TK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV------EAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             TT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSEEEEEEECTTSSEEEEEE
T ss_pred             CC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec------CCCccceEECCCCCEEEEEe
Confidence            77 666666654 457999999999887 5777889999999999877766543      12489999999999999888


Q ss_pred             ---cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEeccc
Q 016522          317 ---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSLHY  373 (388)
Q Consensus       317 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~  373 (388)
                         .++.|++||+.+++.+..+    ..| ..+.+++|+|++++| ++++.|+.|++|+..
T Consensus       219 ~~~~~~~v~~~d~~~~~~~~~~----~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNKITARI----PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEE----ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cCcCCCcEEEEECCCCeEEEEE----ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence               6899999999999888877    344 357899999999877 677889999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.6e-33  Score=246.80  Aligned_cols=270  Identities=15%  Similarity=0.130  Sum_probs=220.9

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      ....+..+..|+....++...+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++....+..+. .+.+++|+|+
T Consensus         7 s~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd   84 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence            345567788899999999999987765 8999999999976 677799999999999999988887766 7999999999


Q ss_pred             CCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          121 GQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       121 ~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      +++++++ +.++.|++||+.+++       ....+.. ...+.+++|+|++..++++++.|+.|++||+.+++....+  
T Consensus        85 g~~l~~~~~~~~~v~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--  154 (391)
T 1l0q_A           85 GKQVYVTNMASSTLSVIDTTSNT-------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV--  154 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--
T ss_pred             CCEEEEEECCCCEEEEEECCCCe-------EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE--
Confidence            9988655 467999999998754       3444444 4568999999998655588899999999999999888776  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEE
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRL  276 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i  276 (388)
                         .. ...+.+++|+|++..++++++.++.|++||+++. .....+. +...+.+++|+|++++|++++   .++.|++
T Consensus       155 ---~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~  228 (391)
T 1l0q_A          155 ---SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (391)
T ss_dssp             ---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             ---ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence               23 3567999999944444478888999999999876 5555554 566789999999999999888   6899999


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE-EEEecCCcEEEEEcccceEEeec
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      ||+.+++.+..+....      .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus       229 ~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          229 IDTGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEEecCC------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            9999988777665422      37899999999977 56678999999999999988776

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=245.84  Aligned_cols=250  Identities=14%  Similarity=0.084  Sum_probs=202.0

Q ss_pred             eccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECC--CCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           61 RTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNAL--TSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      ....+|.+.|++++|+|++++| ++++.||.|++||+.  +++.+..+.  .+...|.+++|+|++++|++|+.+|.+++
T Consensus        96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            3456799999999999999996 899999999999999  888888876  56688999999999999999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      |++.......   .....+.+|...|.+++|+|+   + .+|++++.|+.|++||+.++..+..+.    .+|...|.++
T Consensus       176 ~~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~  247 (450)
T 2vdu_B          176 IDINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSI  247 (450)
T ss_dssp             EETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEE
T ss_pred             EecCCccccc---ccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEE
Confidence            9998754211   022356789999999999998   5 689999999999999999998877642    5899999999


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec-------------------------ccCCeeEEEEccCCCEEEE
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------------------HEGDVNTVKFFPDGNRFGT  267 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~l~~  267 (388)
                      +|+  ++.+|++++.|+.|++||++++ +.+..+..                         ....|.+++|+|++++|++
T Consensus       248 ~~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  324 (450)
T 2vdu_B          248 CCG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF  324 (450)
T ss_dssp             EEC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred             EEC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence            999  7889999999999999999987 66666653                         2356899999999999999


Q ss_pred             ee-CCCcEEEEEC--CCC---ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcc
Q 016522          268 GS-DDGTCRLFDI--RTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL  327 (388)
Q Consensus       268 ~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~  327 (388)
                      ++ .|+.|++|++  ..+   .....+...      ..+.+++|+|++.++++++.      +..|.+|.+.
T Consensus       325 ~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          325 FVEATKCIIILEMSEKQKGDLALKQIITFP------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EETTCSEEEEEEECSSSTTCEEEEEEEECS------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EECCCCeEEEEEeccCCCCceeeccEeccC------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            98 8999999999  555   333333322      35999999996544444443      4457888764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-34  Score=252.57  Aligned_cols=248  Identities=13%  Similarity=0.056  Sum_probs=176.6

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-----EeeeCCccEEEEEECC--------CCCEEEEeeCCCc
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSP--------TGQSVACGGLDSV  132 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~  132 (388)
                      |...+....+.+++.+|++++.|++|+|||..+++...     .+.+|...|.+++|+|        ++++|++|+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            44444445555667789999999999999998876543     3567999999999997        7899999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec-------------
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-------------  199 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------------  199 (388)
                      |+|||+.++.       .......|...|.+++|+|++..+|++++.||.|++||+++++.......             
T Consensus       168 v~~Wd~~~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          168 LIIWRLTDEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EEEEEEETTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             EEEEECCCCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            9999997644       45667788899999999998767899999999999999998765433211             


Q ss_pred             -------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEE----------------
Q 016522          200 -------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV----------------  256 (388)
Q Consensus       200 -------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~----------------  256 (388)
                             .....|...+.++.|.+.++..+++++.|+.+++||+... +....+..|...+..+                
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSS
T ss_pred             cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcce
Confidence                   0114677889999998668999999999999999999866 4444444444333332                


Q ss_pred             --EEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          257 --KFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       257 --~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                        .|+|  ++.++++|+.||.|++||+.+++.........     .+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~-----~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG-----MPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS-----SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC-----CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence              3333  34467788899999999999998877765543     3599999999999999998665 6666653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=242.07  Aligned_cols=257  Identities=15%  Similarity=0.170  Sum_probs=208.2

Q ss_pred             EECCCCCeeeEeeeCCccEEEEEECCC---CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC
Q 016522           94 WNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE  170 (388)
Q Consensus        94 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (388)
                      |+....+.+..+..|...|++++|+|+   |++|++|+.||.|++|++.+..     ......+.+|...|.+++|+|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC
Confidence            455667777888899999999999999   6999999999999999998622     12446788899999999999986


Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe--eCCCCcEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI--SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (388)
                       .+|++++.||.|++||+.+++....      ..|...|.+++|  +| ++.+|++++.||.|++||+++. ..+..+..
T Consensus        99 -~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~  169 (368)
T 3mmy_A           99 -SKVFTASCDKTAKMWDLSSNQAIQI------AQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL  169 (368)
T ss_dssp             -SEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred             -CEEEEEcCCCcEEEEEcCCCCceee------ccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence             6899999999999999999887765      368899999999  76 7889999999999999999987 67777776


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE----EEEEecCCcEEEE
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL----LFAGYSNGDCYVW  324 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~  324 (388)
                      +. .+.++.+.  ...+++++.++.+.+|+++...........   .......++++.++...    +++++.||.|++|
T Consensus       170 ~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          170 PE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES---PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC---SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             CC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc---cccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            54 56666665  458899999999999999876554433321   12234566666655543    9999999999999


Q ss_pred             Ecccc---eEEeeccCCCCCcCC------------CeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          325 DTLLA---KVVLNLGSLQNSHEG------------RITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       325 d~~~~---~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |+...   .....+    ..|..            .|++++|+|++++|++|+.||.|++|+...
T Consensus       244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          244 YINPPNPAKDNFTF----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             ESSCSCHHHHSEEE----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ecCCCCccccceee----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence            99876   333344    34544            799999999999999999999999999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3e-33  Score=241.19  Aligned_cols=249  Identities=12%  Similarity=0.096  Sum_probs=183.1

Q ss_pred             EEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc
Q 016522           93 VWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT  172 (388)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  172 (388)
                      +|++.+.+.+.....|...|.+++|+|+|++|++|+.++ +++|++....         .....+...+..+.+.++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCE
Confidence            566777777777888999999999999999999998776 7899987632         222222235777888887755


Q ss_pred             eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522          173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  252 (388)
Q Consensus       173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  252 (388)
                      ++++++.|+.|++||..+++.+..+      .+...|.++++++ +  .++++ .++.|++||+....+.+..+..   +
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~  139 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---F  139 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred             EEEEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence            5578888999999999999988876      3566899999986 3  34444 3789999999876344444443   4


Q ss_pred             eeEEEEccCCCEEEE--eeCCCcEEEEECCCCce----------------eeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          253 VNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       253 i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      ...+++++  .++++  |+.||.|++||+.++..                ...+     ..|...|++++|+|+|++|++
T Consensus       140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE-----CCCSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEE
Confidence            44566776  56666  68999999999997651                3333     235557999999999999999


Q ss_pred             EecCCc-EEEEEcccceEEeeccCCCCC-cCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          315 GYSNGD-CYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       315 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |+.||+ |++||+.+++.+..+.   .+ |...|.+++|+|++++|++++.|+.|+||+...
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            999998 9999999999998882   24 999999999999999999999999999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.2e-33  Score=239.95  Aligned_cols=282  Identities=17%  Similarity=0.238  Sum_probs=199.3

Q ss_pred             ccccCCCCCcccCCCCc----eeeeccccccCCeeEEEeCC--CCCeEEEEeCCCcEEEEECCCC---------CeeeEe
Q 016522           41 YSRSQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTS---------QKTHAI  105 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~---------~~~~~~  105 (388)
                      .....+..+..|+....    +....+.+|.+.|++++|+|  ++++|++|+.||.|++||+.++         +....+
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  106 (351)
T 3f3f_A           27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL  106 (351)
T ss_dssp             EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred             EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence            34456677888877654    57788899999999999999  6899999999999999999887         457777


Q ss_pred             eeCCccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-------EecccccceEEEEEEeC--CCceE
Q 016522          106 KLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-------MLSGHKGYVSCCQYVPD--EDTHL  174 (388)
Q Consensus       106 ~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~--~~~~l  174 (388)
                      ..|...|.+++|+|+  +.+|++++.||.|++||+.++..... +....       ....|...+.+++|+|+  ...++
T Consensus       107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l  185 (351)
T 3f3f_A          107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS-WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL  185 (351)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC-CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred             cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc-ccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence            889999999999999  99999999999999999987653211 11111       11267889999999997  34789


Q ss_pred             EEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEEEeeCCCC----cEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522          175 ITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       175 ~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (388)
                      ++++.|+.+.+|+...+..  ...+     ..|...|.+++|+| ++    ++|++++.||.|++||++.. ........
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  258 (351)
T 3f3f_A          186 AVSALEQAIIYQRGKDGKLHVAAKL-----PGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEK-LSPLASEE  258 (351)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEEEC-----CCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEEC-C-------
T ss_pred             EEecCCCcEEEEccCCCceeeeeec-----CCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCC-cCccccCC
Confidence            9999999998888877765  3344     67899999999999 55    89999999999999999876 33223333


Q ss_pred             ccCCeeEEEEccCCCEEEEee----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          249 HEGDVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                      +..........+....+..+.    ....+.+|+....+.+..+.     .+...|++++|+|++++|++|+.||.|++|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-----DHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             --------------------------------CCSEEEEEEEEEC-----TTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             cccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-----cccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            333344444444444444433    33445566655555555443     344569999999999999999999999999


Q ss_pred             EcccceEEeec
Q 016522          325 DTLLAKVVLNL  335 (388)
Q Consensus       325 d~~~~~~~~~~  335 (388)
                      |+.+++....+
T Consensus       334 ~~~~~~~~~~~  344 (351)
T 3f3f_A          334 KATYSNEFKCM  344 (351)
T ss_dssp             EECTTSCEEEE
T ss_pred             ecCcCcchhhe
Confidence            99877554443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=236.24  Aligned_cols=256  Identities=12%  Similarity=0.017  Sum_probs=201.8

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC---------CCCeeeEee-eCCc
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL---------TSQKTHAIK-LPCA  110 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~---------~~~~~~~~~-~~~~  110 (388)
                      ..+..+..+..|+....+.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|..
T Consensus        52 ~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (343)
T 3lrv_A           52 MCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN  126 (343)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred             EEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence            445567778889888888777776  578999999998   9999999999999654         455444444 5667


Q ss_pred             cEEEEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          111 WVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       111 ~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      .|.+++|+|  +++++++++.||.|++||++++.       ..... ..|...+.+++|+|++ .++++|+.||.|++||
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYN  198 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEE
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence            899999999  99999999999999999998754       33333 3456689999999987 7899999999999999


Q ss_pred             cCCCceE-EEeecccccC-CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCee--EEEEcc
Q 016522          188 ITTGLRT-SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVN--TVKFFP  260 (388)
Q Consensus       188 ~~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~--~~~~~~  260 (388)
                      +++++.. ..+     .. |...|.+++|+| ++.+|++++ ++.|++||++.. .....+.   .|...+.  +++|+|
T Consensus       199 ~~~~~~~~~~~-----~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          199 LSSPDQASSRF-----PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             SSCTTSCCEEC-----CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECT
T ss_pred             CCCCCCCccEE-----eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECC
Confidence            9999877 666     45 899999999999 889999999 559999999987 4433332   2444444  699999


Q ss_pred             CCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC---CCCEEEEEecCCcEEEEEc
Q 016522          261 DGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       261 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~  326 (388)
                      ++++|++++. |+.+++|++.........         .++..++|.+   +...+++++.||.+.++-.
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEecCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            9999999998 999999999766544333         1377888998   8889999999999988754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.4e-31  Score=236.08  Aligned_cols=262  Identities=15%  Similarity=0.173  Sum_probs=216.3

Q ss_pred             cCCCCCcccCCCCceeee-----ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522           44 SQGRAPVSFGPTDLVCCR-----TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  118 (388)
                      ..+..+..|++...+...     .+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++....+..+...+.+++|+
T Consensus       141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  220 (433)
T 3bws_A          141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD  220 (433)
T ss_dssp             TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred             CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence            334557778888777776     677899999999999999999999999999999999999999999889999999999


Q ss_pred             CCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee--------CCCeEEEEecC
Q 016522          119 PTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--------GDQTCVLWDIT  189 (388)
Q Consensus       119 ~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~v~i~d~~  189 (388)
                      |+++.++++ +.++.|++||+.++.       ....+.. ...+.+++|+|++ ..+++++        .||.|++||+.
T Consensus       221 ~~~~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          221 PIRDLVYCSNWISEDISVIDRKTKL-------EIRKTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTTE-------EEEECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             CCCCEEEEEecCCCcEEEEECCCCc-------EEEEecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECC
Confidence            999988554 479999999998754       3444444 3558999999997 4666666        58999999999


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      +++....+      .+...+.+++|+|.+..++++++.++.|++||+.+. +....+. +...+.+++|+|+++++++++
T Consensus       292 ~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          292 KEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSC  363 (433)
T ss_dssp             TTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEE
T ss_pred             CCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEe
Confidence            98777665      445688999999944457778899999999999876 5555554 677899999999999988887


Q ss_pred             C---------------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEccc
Q 016522          270 D---------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL  328 (388)
Q Consensus       270 ~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  328 (388)
                      .               ||.|++||+.+++....+...      ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus       364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cCCCccccccccccccceEEEEEECCCCcEEEEecCC------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            6               579999999998887776541      24899999999999988875 99999999753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.3e-31  Score=219.38  Aligned_cols=222  Identities=12%  Similarity=0.057  Sum_probs=168.2

Q ss_pred             CCCcccCCCCc---eeeeccccccCC-------------------------eeEEEeCCC----CCeEEEEeC-------
Q 016522           47 RAPVSFGPTDL---VCCRTLQGHAGK-------------------------VYSLDWTSE----RNRIVSASQ-------   87 (388)
Q Consensus        47 ~~~~~~~~~~~---~~~~~l~~h~~~-------------------------v~~~~~~~~----~~~l~t~~~-------   87 (388)
                      ..+..|+|...   ++++++++|..+                         |.+++|+|+    ++.+++++.       
T Consensus        63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l  142 (356)
T 2w18_A           63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL  142 (356)
T ss_dssp             SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE
T ss_pred             ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec
Confidence            44556777777   788888888864                         455666667    667776553       


Q ss_pred             -------------CCcEEEEEC-CCCCeeeEeeeCCccEEEEEECC---CCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           88 -------------DGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        88 -------------dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                                   |+.|++|++ .+++.+..+..|...+..++|++   ++.+|++|+.|++|+|||+.+++       .
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------~  215 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------L  215 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-------E
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-------E
Confidence                         888889988 44777888888888888888888   77999999999999999999866       6


Q ss_pred             eEEecccc---cceEEEEEEeCCCce-----------EEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          151 SRMLSGHK---GYVSCCQYVPDEDTH-----------LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       151 ~~~~~~~~---~~v~~~~~~~~~~~~-----------l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      ...+.+|.   ..+.+++|+|++..+           +++|+.|++|++||..+++.+..+......+|...+.+..++ 
T Consensus       216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-  294 (356)
T 2w18_A          216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-  294 (356)
T ss_dssp             EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred             EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-
Confidence            66776543   467788999987432           367889999999999999887665322224565555544443 


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCee-EEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN-TVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                        +.++++++.|++|+|||+.++ +.+.++.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus       295 --g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          295 --DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             --CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence              578999999999999999988 88899999987655 5899999999999999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=3.3e-30  Score=233.17  Aligned_cols=309  Identities=12%  Similarity=0.072  Sum_probs=236.5

Q ss_pred             CCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC--CCCCeeeEeeeCCccEEEEEECC----
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSP----  119 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~----  119 (388)
                      +..+..|+....+++.++..+.. +.+++|+|+|++|++++.|++|.+||+  .+++.+..+.. ...+..++|+|    
T Consensus       158 d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~  235 (543)
T 1nir_A          158 AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGY  235 (543)
T ss_dssp             GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTC
T ss_pred             CCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCC
Confidence            44566788888888888884333 899999999999999999999999999  78888888874 45689999999    


Q ss_pred             CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc----------cc-cceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          120 TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       120 ~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      +|+++++++. ++.|.+||..+.+       ....+..          |. ..+..+.++|++..++++...++.|.+||
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd  308 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  308 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEccCCeEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence            9999999885 8999999988754       4444433          22 36889999998888888999999999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEccC-
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPD-  261 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~-  261 (388)
                      ..+.+......    ..+...+..+.|+| +++++ +++..+++|.+||..++ +.+..+..    |.+....+ ++|+ 
T Consensus       309 ~~~~~~l~~~~----i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          309 YKDIDNLTVTS----IGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             CTTSSSCEEEE----EECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             ecCCCcceeEE----eccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCC
Confidence            98865443111    13456678899999 66654 45556899999999987 66666653    54433333 4676 


Q ss_pred             CCEEEEee-CCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-------cCCcEEEEEc
Q 016522          262 GNRFGTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-------SNGDCYVWDT  326 (388)
Q Consensus       262 ~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~  326 (388)
                      +..++++. .|++|.+||+.+       .+.+..+....     ..+..++++|++++|++++       .+++|.+||+
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            66666765 689999999988       77777775433     2367899999999999987       3679999999


Q ss_pred             ccceEE-eeccC----CCCCcCCCeeEEEECCCCCeEEEcc-----CCCeEEEecccee
Q 016522          327 LLAKVV-LNLGS----LQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVSLHYYI  375 (388)
Q Consensus       327 ~~~~~~-~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~~  375 (388)
                      .+++.. ..+..    -...+...+..++|+|+|+.|+++.     .|+.|.||+....
T Consensus       457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            987755 22210    0024567899999999999998762     4899999997653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=4.1e-30  Score=225.93  Aligned_cols=279  Identities=14%  Similarity=0.044  Sum_probs=218.3

Q ss_pred             CCcccCC--CCceee--eccccccCCeeEEEeCC--------------CCCeEEEEeCC------CcEEEEECCCCCeee
Q 016522           48 APVSFGP--TDLVCC--RTLQGHAGKVYSLDWTS--------------ERNRIVSASQD------GRLIVWNALTSQKTH  103 (388)
Q Consensus        48 ~~~~~~~--~~~~~~--~~l~~h~~~v~~~~~~~--------------~~~~l~t~~~d------g~v~iwd~~~~~~~~  103 (388)
                      ....|+.  ...+++  ..+.+|...+..+++++              .+..++.++.+      +.|++||+. +....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence            5678888  777766  56899999999888875              15667766654      799999987 45567


Q ss_pred             EeeeCCccEEEEEECCCCCEEEEeeCCC---cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          104 AIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      .+..|...+.+++|+|+|+.|++++.++   .|++||+.+++        ...+..|...+.+++|+|+|..++++++.+
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            7788888999999999999999999875   99999998754        235667788999999999985555477766


Q ss_pred             Ce--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CC--ceEEEECCCCCcceEEEecccCCeeE
Q 016522          181 QT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNT  255 (388)
Q Consensus       181 g~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~  255 (388)
                      +.  |++||+.+++.. .+     ..+...+.+++|+| +++.|++++. ++  .|.+||+..+ . ...+..+...+.+
T Consensus       245 g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~  315 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIR-QV-----TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQD  315 (415)
T ss_dssp             SSCEEEEEETTTCCEE-EC-----CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEE
T ss_pred             CCceEEEEECCCCCEE-eC-----cCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccC
Confidence            64  999999988763 33     56778899999999 7777776665 45  5677788765 2 4455567778899


Q ss_pred             EEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccc
Q 016522          256 VKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLA  329 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  329 (388)
                      ++|+|+|++|++++.+   ..|.+||+.+++... +...      ..+.+++|+|+|++|++++.++   .|++||+..+
T Consensus       316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             eEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            9999999999988764   589999999877633 2211      1589999999999999888877   7999998744


Q ss_pred             eEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          330 KVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                       ....+    ..|.+.|.+++|+|.-.
T Consensus       389 -~~~~l----~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          389 -FKARL----PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             -CEEEC----CCSSSEEEEEEECCCCC
T ss_pred             -cEEEe----eCCCCCCcCCccccccc
Confidence             45556    68899999999999643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=5.1e-30  Score=225.34  Aligned_cols=278  Identities=14%  Similarity=0.134  Sum_probs=213.8

Q ss_pred             ccCCeeEEEeCCCCC-eEEEEe----CCC----cEEEEEC--CCCCee--eEeeeCCccEEEEEECC-------------
Q 016522           66 HAGKVYSLDWTSERN-RIVSAS----QDG----RLIVWNA--LTSQKT--HAIKLPCAWVMTCAFSP-------------  119 (388)
Q Consensus        66 h~~~v~~~~~~~~~~-~l~t~~----~dg----~v~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------  119 (388)
                      +...+...+|.+.|. ++++|+    .||    .|++||+  .+++.+  ..+..|...+..+++++             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            335788888988875 566776    467    8999999  898877  44778877777776664             


Q ss_pred             -CCCEEEEeeCC------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecC
Q 016522          120 -TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDIT  189 (388)
Q Consensus       120 -~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~  189 (388)
                       .+..++.++.+      +.|++||++..        ....+..|...+.+++|+|+| +.|++++.++   .|++||+.
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~  211 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLA  211 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETT
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECC
Confidence             25566665554      79999999752        245667788999999999997 5788888775   99999999


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      +++....      ..+...+.+++|+| +++.|+ +++.++.  |++||+.++ . ...+..|...+.+++|+|+|++|+
T Consensus       212 tg~~~~l------~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          212 NGAVRQV------ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             TCCEEEE------ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEe------ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEE
Confidence            9877643      46677899999999 666555 6666665  899999865 3 366777888999999999999998


Q ss_pred             EeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceEEeeccCCCC
Q 016522          267 TGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN  340 (388)
Q Consensus       267 ~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~  340 (388)
                      +++. ++  .|.+||+.+++... +..     +...+..++|+|+|++|++++.+   ..|++||+.+++... +    .
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~~~-l~~-----~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l----~  351 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAPQR-ITW-----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----S  351 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCCEE-CCC-----SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C----C
T ss_pred             EEECCCCCcEEEEEECCCCCEEE-Eec-----CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e----c
Confidence            8876 44  68888988776432 211     22358899999999999988764   589999999887743 4    3


Q ss_pred             CcCCCeeEEEECCCCCeEEEccCCC---eEEEeccc
Q 016522          341 SHEGRITCLGLSADGSALCTGSWDT---NLKVSLHY  373 (388)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~  373 (388)
                      .+. .+.+++|+|||++|++++.|+   .|.+|+..
T Consensus       352 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          352 STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            443 899999999999999988877   78888754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.4e-29  Score=224.37  Aligned_cols=285  Identities=13%  Similarity=0.055  Sum_probs=222.0

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC--CCCCCCCCCCcee
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDGNLPVS  151 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~  151 (388)
                      +|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+  .+..       ..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EE
Confidence            4889998999999999999999999999999885554 889999999999999999999999999  4432       44


Q ss_pred             EEecccccceEEEEEEe----CCCceEEEee-CCCeEEEEecCCCceEEEeeccccc-----CC-ccCeEEEEeeCCCCc
Q 016522          152 RMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS-----GH-TADVLSVSISGSNSR  220 (388)
Q Consensus       152 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~-----~~-~~~i~~~~~~~~~~~  220 (388)
                      ..+. +...+..++|+|    +|. ++++++ .++.|.+||..+++.+..+......     .| ...+.++.++|.+..
T Consensus       216 ~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          216 AEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             EEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence            5555 345678999999    874 566655 5899999999999988887431100     02 237889999997778


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      ++++...++.|.+||+............+...+..+.|+|+++++++++ .+++|.+||+.+++....+..... .+...
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-ph~g~  372 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGR  372 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-BCCTT
T ss_pred             EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-CCCCC
Confidence            8888889999999999876333222224566788999999999876654 688999999999988877654221 12222


Q ss_pred             eEEEEecCC-CCEEEEEe-cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-------C
Q 016522          300 VTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-------W  363 (388)
Q Consensus       300 i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~  363 (388)
                      ...+ ++|+ +.+++++. .|++|.+||+.+       ++.+.++    ..|.+.+..++++|+|++|++++       .
T Consensus       373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----EcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            2333 4677 55666664 579999999988       8888888    67888889999999999999987       3


Q ss_pred             CCeEEEeccce
Q 016522          364 DTNLKVSLHYY  374 (388)
Q Consensus       364 dg~v~iw~~~~  374 (388)
                      +++|.||+...
T Consensus       448 ~~~v~v~d~~~  458 (543)
T 1nir_A          448 SQSVAVFDLKN  458 (543)
T ss_dssp             HTCEEEEETTC
T ss_pred             CceEEEEECCC
Confidence            78999999753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=3.5e-27  Score=201.64  Aligned_cols=280  Identities=14%  Similarity=0.122  Sum_probs=201.8

Q ss_pred             EeCCCCCe-EEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCce-
Q 016522           74 DWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPV-  150 (388)
Q Consensus        74 ~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~-  150 (388)
                      .|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+|+++++++. ++.|.+||..++.       . 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-------PK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS-------CE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-------ee
Confidence            45665554 6788889999999999999988888777777 9999999997776665 8899999998754       3 


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                      ...+..+..+..+++|+|++ .+++++..++   .|.+||+.+++....+.      ......+++|+|++..+++++..
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTEEEEEECTTSSCEEEEEET
T ss_pred             EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCccceEECCCCCEEEEEecC
Confidence            45555566666559999997 4566555553   89999999998877762      33456899999944446666666


Q ss_pred             CCc-eEEEECCCCCcce---EEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCce---eeEeeeccCCCCCCC
Q 016522          228 DST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPH  299 (388)
Q Consensus       228 dg~-i~i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~  299 (388)
                      ++. |.+|++.......   .........+..++|+|++++++++ ..++.|.+||+.+++.   +..+...      ..
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~------~~  222 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN------NL  222 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS------SC
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC------CC
Confidence            688 9999988542221   1122334568899999999966554 4688999999998887   5554432      24


Q ss_pred             eEEEEecCCCCEEEEEe-cCCcEEEEEcccceE--EeeccCCCCCcC---CCeeEEEECCCCCeEEEcc-CCCeEEEecc
Q 016522          300 VTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSLQNSHE---GRITCLGLSADGSALCTGS-WDTNLKVSLH  372 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~  372 (388)
                      +..++|+|+|++++++. .++.|.+||+.+++.  +..+......+.   .....++|+|||++|++++ .++.|.+|+.
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            68899999999776665 467899999998877  333211001111   2235689999999886554 5679999997


Q ss_pred             ce
Q 016522          373 YY  374 (388)
Q Consensus       373 ~~  374 (388)
                      ..
T Consensus       303 ~~  304 (331)
T 3u4y_A          303 SG  304 (331)
T ss_dssp             TS
T ss_pred             cC
Confidence            54

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.97  E-value=4.6e-27  Score=202.76  Aligned_cols=273  Identities=15%  Similarity=0.109  Sum_probs=212.3

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeC-------CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEe
Q 016522           66 HAGKVYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFN  137 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~  137 (388)
                      ....+..++|+|+++++++++.       ++.|.+||..+++....+..... +..++|+|+|++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4457889999999998888774       56899999999998888876544 7889999999965554 5579999999


Q ss_pred             CCCCCCCCCCCceeEEeccccc---------ceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKG---------YVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTA  207 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  207 (388)
                      ..+++       ....+..+..         .+.+++|+|+++.+++++ +.++.|.+||+.+++....+     ..+..
T Consensus       118 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~  185 (353)
T 3vgz_A          118 AKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-----QNTGK  185 (353)
T ss_dssp             TTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-----CCCCT
T ss_pred             CCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-----cCCCC
Confidence            98755       3344443322         268899999986544444 35889999999999888877     33555


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG  282 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  282 (388)
                      .+.+++|+| +++.+++++.++.|.+||+.+. +....+..    +...+..++|+|+++++++++. ++.|.+||+.++
T Consensus       186 ~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          186 MSTGLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TCCCCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ccceEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            678899999 7788888888999999999877 55555543    4556788999999998777665 489999999999


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      +....+....       ...++|+|+|++++++. .++.|.+||..+++.+..+.     ....+.+++|+|+|++|+++
T Consensus       264 ~~~~~~~~~~-------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          264 NILAKVAAPE-------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-----TPTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             CEEEEEECSS-------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-----CCSEEEEEEECTTSCEEEEE
T ss_pred             cEEEEEEcCC-------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-----cCCCCCeEEEcCCCCEEEEE
Confidence            8877765422       25689999999776665 68999999999999887762     23468999999999988777


Q ss_pred             cCCC
Q 016522          362 SWDT  365 (388)
Q Consensus       362 ~~dg  365 (388)
                      ..++
T Consensus       332 ~~~~  335 (353)
T 3vgz_A          332 VKQK  335 (353)
T ss_dssp             EECC
T ss_pred             Eccc
Confidence            6553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=3e-28  Score=230.72  Aligned_cols=285  Identities=10%  Similarity=0.087  Sum_probs=213.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeC-CC-----cEEEEECCCCCeeeEeeeCCc------------------------cEEEEE
Q 016522           67 AGKVYSLDWTSERNRIVSASQ-DG-----RLIVWNALTSQKTHAIKLPCA------------------------WVMTCA  116 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~-dg-----~v~iwd~~~~~~~~~~~~~~~------------------------~v~~~~  116 (388)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            447999999999999999998 88     899999999987766654432                        378899


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522          117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  196 (388)
                      |+|||++|++++. +.|.+||+.++..     +....+..|...+..++|+|+| +.|+.++ ++.|++||+.+++....
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence            9999999999886 9999999987510     0123455677889999999998 5677666 46899999998876554


Q ss_pred             eecccccCCcc----------------CeEEEEeeCCCCcEEEEeeCCC-------------------------------
Q 016522          197 FGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS-------------------------------  229 (388)
Q Consensus       197 ~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg-------------------------------  229 (388)
                      .     ..+..                .+.++.|+| +++.|++++.|+                               
T Consensus       188 ~-----~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          188 T-----ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             C-----CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             c-----cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            3     22222                147899999 777777776655                               


Q ss_pred             --ceEEEECCC-CCcceEEEe--cccCCeeEEEEccCCCEEEEeeC-----CCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          230 --TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       230 --~i~i~d~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                        .|.+||+.+ + +......  .|...+..++| |||++|++++.     +..|++||+.+++....+..... .....
T Consensus       262 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~  338 (741)
T 2ecf_A          262 QVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-TWVPL  338 (741)
T ss_dssp             EEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-SCCCC
T ss_pred             eeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-CcCCc
Confidence              788899887 5 3333222  46778999999 99999987654     56799999999887665543321 11112


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEE-EECCCCCeEEE-ccCCC--eEEEeccc
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL-GLSADGSALCT-GSWDT--NLKVSLHY  373 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s-~~~dg--~v~iw~~~  373 (388)
                      +..++|+|+|+++++++.+|.+.+|.+. .++ ...+    ..|...|..+ +|+|+|+.|+. ++.|+  .++||...
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            4678999999999999899987887765 344 5556    5677788887 59999987754 55555  89999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=5.3e-27  Score=201.45  Aligned_cols=277  Identities=11%  Similarity=0.080  Sum_probs=189.2

Q ss_pred             eEEEEeCCCcEEEEECCC-CCe-eeEeeeCCccEEEEEECCCCCEEEEeeCC-CcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           81 RIVSASQDGRLIVWNALT-SQK-THAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      .+++++.|+.|++||+.. ++. ......+...+.+++|+|++++|++++.+ +.|.+|++....   +.......+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccC
Confidence            344557899999999853 322 22223456678999999999999888876 999999997311   122233334433


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEE
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARL  233 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i  233 (388)
                      . .+..++|+|++..+++++..++.|.+||+..+   .....+      .....+.+++|+| +++++++++ .++.|.+
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------EGLDGCHSANISP-DNRTLWVPALKQDRICL  155 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE------CCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc------cCCCCceEEEECC-CCCEEEEecCCCCEEEE
Confidence            3 78899999998544455556899999999533   333333      3344688999999 666666655 8999999


Q ss_pred             EECCCCCcceE----EEec-ccCCeeEEEEccCCCEEEEee-CCCcEEEEECCC--Cce--eeEeeec-cCCCCCCCeEE
Q 016522          234 WDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GHQ--LQVYYQQ-HGENEIPHVTS  302 (388)
Q Consensus       234 ~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~-~~~~~~~~i~~  302 (388)
                      ||+........    .... ....+..++|+|+++++++++ .++.|.+|++..  +..  ....... ........+..
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            99986323322    2222 334788999999999776554 789999999954  332  1122111 11111234678


Q ss_pred             EEecCCCCEEEEEe-cCCcEEEEEcc----cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEEEeccc
Q 016522          303 IAFSISGRLLFAGY-SNGDCYVWDTL----LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVSLHY  373 (388)
Q Consensus       303 ~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~  373 (388)
                      ++|+|+|++|+++. .++.|.+||+.    ..+.+..+    ..+. .+.+++|+|+|++|++++ .|+.|.+|...
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ----PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE----ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee----cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            99999999887554 68999999998    33444444    2333 388999999999888877 68999999653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=1.2e-27  Score=201.10  Aligned_cols=255  Identities=15%  Similarity=0.141  Sum_probs=189.5

Q ss_pred             EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCCceeEEeccc-ccce
Q 016522           84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYV  161 (388)
Q Consensus        84 t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~-~~~v  161 (388)
                      +++.|+.|++||+.+++.. .+..+...+.+++|+|+|++|++++ ++.|.+||+.+ +.       .......+ ...+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence            4567899999999887765 4555778899999999999999986 78999999987 54       23333444 4678


Q ss_pred             EEEEEEeCCCceEEEee--CCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEEC
Q 016522          162 SCCQYVPDEDTHLITSS--GDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDT  236 (388)
Q Consensus       162 ~~~~~~~~~~~~l~~~~--~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~  236 (388)
                      .+++|+|++ .++++++  .++  .|..++..++.. ..+      .....+..++|+| +++.++ ++..++.+.+|++
T Consensus        88 ~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           88 NDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             SCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EEC------CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred             cceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEe------ecCCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence            899999997 5677777  334  444555555543 222      2333588999999 555554 7888999999997


Q ss_pred             CCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      +........+..+...+.+++|+|++++|+.++ .++.+.+|++. .+.....+..     +...+..++|+|+|++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-----SAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-----CSEEEEEEEECTTSSEEEE
T ss_pred             ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-----CCcccCCeEECCCCCEEEE
Confidence            644455666777888999999999999888766 58899999986 3444444322     2235889999999999988


Q ss_pred             EecC-----------CcEEEEEcccceEE--eeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          315 GYSN-----------GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       315 ~~~d-----------g~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      ++.+           +.|++||+.+++..  ..+    ..|...+.+++|+|++++|++++.|.
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL----FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE----EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEcCCCCCcccccCceEEEEEecCCCCceeeecc----CCCCcccccceECCCCCEEEEEEecc
Confidence            8765           46999999887543  333    36778899999999999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=9.8e-26  Score=192.68  Aligned_cols=278  Identities=10%  Similarity=0.032  Sum_probs=201.0

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCe-eeEeeeCCccEEEEEECC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQK-THAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~  119 (388)
                      ....+.....|++...+....+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|
T Consensus        15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~   93 (331)
T 3u4y_A           15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP   93 (331)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred             EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence            33445677889988888888888777777 9999999997766655 88999999999987 777777766655599999


Q ss_pred             CCCEEEEeeCCC---cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-EEEEecCCCceEE
Q 016522          120 TGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTS  195 (388)
Q Consensus       120 ~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~  195 (388)
                      +|++++++..++   .|.+||+.++.       ....+.. .....+++|+|+|..++++...++. |.+|++.......
T Consensus        94 dg~~l~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           94 DDQFAVTVTGLNHPFNMQSYSFLKNK-------FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             TSSEEEECCCSSSSCEEEEEETTTTE-------EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             CCCEEEEecCCCCcccEEEEECCCCC-------eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence            999999665553   89999998754       3344443 3446899999998666677777788 9999988654332


Q ss_pred             EeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEee-C
Q 016522          196 VFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-D  270 (388)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  270 (388)
                      ... .........+..++|+| +++ +++++..++.|.+||+.+. +.   +..+.. ...+..++|+|+|+++++++ .
T Consensus       166 ~~~-~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          166 DTG-QEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             EEE-EEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS
T ss_pred             ecC-CccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeeeccC-CCCCceEEECCCCCEEEEEEcC
Confidence            221 11123445689999999 565 5566667899999999876 44   555553 46678999999999776654 5


Q ss_pred             CCcEEEEECCCCce--eeEeeec--cCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccceEE
Q 016522          271 DGTCRLFDIRTGHQ--LQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVV  332 (388)
Q Consensus       271 dg~i~i~d~~~~~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  332 (388)
                      ++.|.+||+.+++.  +..+...  ...........++|+|+|++|++++. ++.|.+||+.....-
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence            78899999998876  3322221  00111112356899999998876655 569999999775543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1.9e-27  Score=224.68  Aligned_cols=287  Identities=13%  Similarity=0.044  Sum_probs=203.4

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc---cEEEEEECCCCCEEEEeeCC---------CcEEEE
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGLD---------SVCSIF  136 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~vw  136 (388)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..+..   .|.+++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 7899999999999988777776654   48999999999999998764         778899


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc---------
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---------  207 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---------  207 (388)
                      |+.++..     ........|...+..++|+|+| +.|+.++. +.|++||+.+++.....     ..+..         
T Consensus        97 d~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDP-----QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCC-----EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECC
T ss_pred             ECCCCce-----EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEe-----cCCCCCceECcccc
Confidence            9987541     1112223455568889999998 45776665 79999999988776655     23222         


Q ss_pred             ---------CeEEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEECCCCCcceE
Q 016522          208 ---------DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAVR  244 (388)
Q Consensus       208 ---------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~  244 (388)
                               .+.+++|+| +++.|++++.++                                  .|++||+.++ ....
T Consensus       165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~  242 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDL  242 (723)
T ss_dssp             HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCE
T ss_pred             eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeE
Confidence                     237899999 778887776543                                  7899999876 4334


Q ss_pred             EEecc------cCCeeEEEEccCCCEEEEeeC----CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          245 TFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       245 ~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      .+..+      ...+..++|+|||++|++.+.    +..|++||+.+++...................++|+|||+.|+.
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence            45443      567899999999998877653    35799999998887655433221100000136799999996665


Q ss_pred             --EecCC------cEEEEE-cccceE--EeeccCCCCCcCCCeeE-EEECCCCCeEEEccCC---CeEEEeccce
Q 016522          315 --GYSNG------DCYVWD-TLLAKV--VLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD---TNLKVSLHYY  374 (388)
Q Consensus       315 --~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~v~iw~~~~  374 (388)
                        +..++      .|++|| ...++.  ...+    ..+...+.. ++|+|||+.|+..+.+   +.+++|....
T Consensus       323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             EEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             EEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence              44566      577777 344431  3333    223344544 6999999999766554   8899998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.7e-26  Score=218.70  Aligned_cols=298  Identities=10%  Similarity=0.093  Sum_probs=213.0

Q ss_pred             CCcccCCCCceeeeccccccC------------------------CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--e
Q 016522           48 APVSFGPTDLVCCRTLQGHAG------------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--K  101 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~------------------------~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~  101 (388)
                      ....|+....+....+..|..                        .|.+++|+|||++|++++. +.|.+||+.++.  .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence            456677777666666655543                        3899999999999999886 899999998873  4


Q ss_pred             eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc----------------ceEEEE
Q 016522          102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----------------YVSCCQ  165 (388)
Q Consensus       102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~  165 (388)
                      ...+..+...+..++|+|||++|+.++ ++.|++||+.++.       .......+..                .+..+.
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~  215 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYW  215 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred             EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-------EEEeccCCccceeccccceeeeeccccccceE
Confidence            455666777899999999999999987 4689999998744       2222222222                147799


Q ss_pred             EEeCCCceEEEeeCCC---------------------------------eEEEEecCC-CceEEEeecccccCCccCeEE
Q 016522          166 YVPDEDTHLITSSGDQ---------------------------------TCVLWDITT-GLRTSVFGGEFQSGHTADVLS  211 (388)
Q Consensus       166 ~~~~~~~~l~~~~~dg---------------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~  211 (388)
                      |+|+| +.|++++.|+                                 .|.+||+.+ ++.......   ..+...+..
T Consensus       216 ~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~  291 (741)
T 2ecf_A          216 WAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLAR  291 (741)
T ss_dssp             ECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEE
T ss_pred             ECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEE
Confidence            99998 4566666554                                 788999988 775544311   246778999


Q ss_pred             EEeeCCCCcEEEEeeC-----CCceEEEECCCCCcceEEEecccC----CeeEEEEccCCCEEEEeeCCCcEEEEECC-C
Q 016522          212 VSISGSNSRMFVSGSC-----DSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFGTGSDDGTCRLFDIR-T  281 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~  281 (388)
                      ++| | +++.|++++.     +..|.+||+.++ .....+..+..    .+..++|+|||+++++++.||.+++|.+. +
T Consensus       292 ~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~  368 (741)
T 2ecf_A          292 VNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK  368 (741)
T ss_dssp             EEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred             EEe-C-CCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence            999 8 7777776543     568999999877 55555554443    45689999999999999999988888765 3


Q ss_pred             CceeeEeeeccCCCCCCCeEEE-EecCCCCEEEE-EecCC--cEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          282 GHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFA-GYSNG--DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      +. ...+..     +...+..+ .|+|+|+.|+. ++.++  .+++|++.. +.....+    .. ...+..++|+|||+
T Consensus       369 ~~-~~~l~~-----~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l----~~-~~~~~~~~~spdg~  437 (741)
T 2ecf_A          369 GK-AAALTH-----GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL----SK-APGMHSASFARNAS  437 (741)
T ss_dssp             SC-EEESCC-----SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC----CC-SCSEEEEEECTTSS
T ss_pred             CC-eeeeee-----cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec----cc-CCCceEEEECCCCC
Confidence            33 333322     22347776 59999997755 44455  899999864 4444444    23 56688999999999


Q ss_pred             eEEEccCC----CeEEEecc
Q 016522          357 ALCTGSWD----TNLKVSLH  372 (388)
Q Consensus       357 ~l~s~~~d----g~v~iw~~  372 (388)
                      +|+....+    +.+.+|..
T Consensus       438 ~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          438 VYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEecCCCCCCeEEEEEc
Confidence            88876543    45666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=7.6e-26  Score=193.74  Aligned_cols=265  Identities=13%  Similarity=0.051  Sum_probs=198.1

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCc--cEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEec-
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA--WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-  155 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-  155 (388)
                      ++|++++.++.|.+||..+++.+..+.....  .+..++|+|+++.++ ++..++.|.+||+.++.       ....+. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence            4789999999999999999988887775542  478999999997665 55567899999998754       333332 


Q ss_pred             c----cccceEEEEEEeCCCceEEEee------------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          156 G----HKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       156 ~----~~~~v~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      .    +...+..++|+|++. .++++.            .++.|.+||+.+++....+.      ....+.+++|+| ++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~-dg  146 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------APRQITMLAWAR-DG  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------CCSSCCCEEECT-TS
T ss_pred             CCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEe------CCCCcceeEECC-CC
Confidence            1    123577899999974 566654            57999999999988777662      234578889999 66


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC------------------------cEE
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------------------------TCR  275 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~  275 (388)
                      ++++++  ++.|.+||+.+. +....+..+.. ...+.|+|++..++..+.++                        .|.
T Consensus       147 ~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          147 SKLYGL--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SCEEEE--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CEEEEe--CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            666666  689999999877 55555554331 11237899988776554332                        468


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      +||+.+++.. .....   .+...+..++|+|+|++++++  ++.|++||+.+++.+..+.     ....+.+++|+|+|
T Consensus       223 ~~d~~~~~~~-~~~~~---~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg  291 (337)
T 1pby_B          223 TMDLETGEMA-MREVR---IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEETTTCCEE-EEEEE---ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTS
T ss_pred             EEeCCCCCce-EeecC---CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCC
Confidence            9999988765 22221   122347889999999999888  6899999999998887762     23467899999999


Q ss_pred             CeEEEccCCCeEEEeccce
Q 016522          356 SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       356 ~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++|++++.++.|.+|+...
T Consensus       292 ~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          292 STVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             CEEEEESBSSEEEEEETTT
T ss_pred             CEEEEEcCCCcEEEEECcC
Confidence            9999999999999998753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=5.7e-26  Score=213.93  Aligned_cols=295  Identities=17%  Similarity=0.152  Sum_probs=205.9

Q ss_pred             ccCCCCceee-ecccccc-----------------CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE
Q 016522           51 SFGPTDLVCC-RTLQGHA-----------------GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV  112 (388)
Q Consensus        51 ~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v  112 (388)
                      .|++.+.+.. ..+..|.                 ..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+
T Consensus        47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~  123 (706)
T 2z3z_A           47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEET  123 (706)
T ss_dssp             EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCC
T ss_pred             EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccc
Confidence            7888777663 4444444                 56999999999 6666554 5999999998876543 44456668


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCC-----CCCCCCCCceeEEeccccc--------------ceEEEEEEeCCCce
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNS-----PTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTH  173 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~  173 (388)
                      .+++|+|+|+.|+++ .++.|++|++.+     +.       .......+..              .+.++.|+|+| ++
T Consensus       124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~  194 (706)
T 2z3z_A          124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SC  194 (706)
T ss_dssp             TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SE
T ss_pred             cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CE
Confidence            899999999999985 679999999987     43       1222222222              25789999998 56


Q ss_pred             EEEee---------------------------------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          174 LITSS---------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       174 l~~~~---------------------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      |++++                                 .+..|.+||+.+++......   ...+...+.+++|+| +++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~sp-dg~  270 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSP-DEN  270 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECT-TSS
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc---CCCCceeEeeEEEEC-CCC
Confidence            77665                                 45789999999887544331   124667799999999 788


Q ss_pred             EEEEeeCCC-----ceEEEECCCCCcceEEEe--cccC---CeeEEEEcc--CCCEEEEeeCCCcEEEEECC-CCceeeE
Q 016522          221 MFVSGSCDS-----TARLWDTRVASRAVRTFH--GHEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQV  287 (388)
Q Consensus       221 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~  287 (388)
                      .+++++.++     .|.+||+.++ .....+.  .+..   .+..++|+|  +|+++++++.||.+++|++. ++.....
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~  349 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ  349 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence            888777665     8999999876 2333322  2222   246789999  99999999999999999876 4555544


Q ss_pred             eeeccCCCCCCCeEE-EEecCCCCEEEEEecC-C----cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          288 YYQQHGENEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      +..     +...+.. ++|+|+|+.|+.++.+ +    .|+.||+.+++ ...+     .+...+.+++|+|||++|+.+
T Consensus       350 l~~-----~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-----~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          350 VTK-----GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-----TPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             CCC-----SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-----CCSSSEEEEEECTTSSEEEEE
T ss_pred             cCC-----CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-----cCCCceEEEEECCCCCEEEEE
Confidence            432     2223665 7999999977665544 3    57777776665 3333     356779999999999988876


Q ss_pred             cCC----CeEEEeccc
Q 016522          362 SWD----TNLKVSLHY  373 (388)
Q Consensus       362 ~~d----g~v~iw~~~  373 (388)
                      +.+    +.|.+|+..
T Consensus       419 ~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          419 FQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             EECSSCSCEEEEEESS
T ss_pred             ecCCCCCcEEEEEECC
Confidence            543    569999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.5e-26  Score=192.95  Aligned_cols=258  Identities=14%  Similarity=0.074  Sum_probs=190.6

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeC-CccEEEEEECCCC
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLP-CAWVMTCAFSPTG  121 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~  121 (388)
                      ..+.....|++...+.. .+..|.+.|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++
T Consensus        19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            34556677887776655 5666999999999999999999987 78999999998 7776666555 3678899999999


Q ss_pred             CEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEee
Q 016522          122 QSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFG  198 (388)
Q Consensus       122 ~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~  198 (388)
                      ++|++++  .++...+|.++....      ....+..+ ..+..++|+|++..++++++.++.+.+|++.. ......+ 
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~-  168 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL-  168 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-
T ss_pred             CEEEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-
Confidence            9999998  335556665543211      12233333 34888999999865555888999999998643 2223333 


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC------
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------  271 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------  271 (388)
                          ..+...+.+++|+| +++.++.++ .++.+++|+++........+..|...+..++|+|++++|++++.+      
T Consensus       169 ----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          169 ----THGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             ----CCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             ----ccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence                46778899999999 666655544 689999999874446677777788889999999999999988866      


Q ss_pred             -----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          272 -----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       272 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                           +.|.+||+.+++........   .+...+..++|+|++++|++++.+.
T Consensus       244 ~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNVETLFDLF---GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CSSEEEEEEEEETTSCSCEEEEEEE---ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccCceEEEEEecCCCCceeeeccC---CCCcccccceECCCCCEEEEEEecc
Confidence                 56999999887654433221   1223478899999999998887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=5.1e-26  Score=209.34  Aligned_cols=269  Identities=12%  Similarity=0.097  Sum_probs=199.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeC---CCcEEEEeCCC-
Q 016522           67 AGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGL---DSVCSIFNLNS-  140 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~-  140 (388)
                      ..+|.+++|+|||++||+++. ||+++||++.+++.. .+..+. ..+..++|+|+ +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 999999998655544 444444 67999999999 77777765   45566665543 


Q ss_pred             -CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          141 -PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       141 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                       ...      .. .+... ..+...+|+|+++..+++++.++.+.+||+.+++......      +..  .+++|+| ++
T Consensus        99 ~~g~------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~------~~~--~~~~~sp-DG  161 (582)
T 3o4h_A           99 RPGE------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR------LPG--FGFVSDI-RG  161 (582)
T ss_dssp             STTC------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE------ESS--CEEEEEE-ET
T ss_pred             CCCc------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec------CCC--ceEEECC-CC
Confidence             211      11 22222 2234668999987766666666666799999887655541      222  7899999 88


Q ss_pred             cEEEEeeCC----CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC--cEEEEECCCCceeeEeeeccC
Q 016522          220 RMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHG  293 (388)
Q Consensus       220 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~  293 (388)
                      +++++++.+    +.|++||+.++ . ...+..|...+..++|+|||+.|+++..++  .|++||+.+++.. .+..   
T Consensus       162 ~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---  235 (582)
T 3o4h_A          162 DLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL---  235 (582)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---
T ss_pred             CEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---
Confidence            888877766    78999998866 3 446778888899999999999999888888  8999999988766 3322   


Q ss_pred             CCCCCCeEEEE--------ecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          294 ENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       294 ~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                        +...+..++        |+|||.++++++.+|.+++|++  ++....       ..+.|.+++|+ +++++++++.+.
T Consensus       236 --~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-------~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          236 --PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-------PQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             --SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-------CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             --CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-------CCCceEEEEec-CCEEEEEEcCCC
Confidence              122244455        9999999999999999999999  665432       33678899999 999999888774


Q ss_pred             e---EEEecc
Q 016522          366 N---LKVSLH  372 (388)
Q Consensus       366 ~---v~iw~~  372 (388)
                      .   +.+|+.
T Consensus       304 ~p~~l~~~d~  313 (582)
T 3o4h_A          304 TPPRIVSLPS  313 (582)
T ss_dssp             EEEEEEEETT
T ss_pred             CCCeEEEEcC
Confidence            4   555553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=6.2e-26  Score=214.32  Aligned_cols=301  Identities=11%  Similarity=0.031  Sum_probs=205.4

Q ss_pred             cCCCCCcccCCCCceeeeccccccC---CeeEEEeCCCCCeEEEEeCC---------CcEEEEECCCCCeeeEee---eC
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIK---LP  108 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~---~~  108 (388)
                      +.+.....|++.+.+....+.+|..   .|.+++|+|||++|++++.+         +.+.+||+.+++. ..+.   .+
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  112 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS  112 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence            3455677899888888888888775   49999999999999999874         7888999998876 3333   23


Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc------------------eEEEEEEeCC
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY------------------VSCCQYVPDE  170 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~  170 (388)
                      ...+..++|+|||+.|+.++. +.|++|++.++.       .......+...                  +.+++|+|+|
T Consensus       113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg  184 (723)
T 1xfd_A          113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG  184 (723)
T ss_dssp             SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred             cccccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence            344888999999999999886 799999998754       22333333322                  3789999998


Q ss_pred             CceEEEeeCCC----------------------------------eEEEEecCCCceEEEeecc-cccCCccCeEEEEee
Q 016522          171 DTHLITSSGDQ----------------------------------TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSIS  215 (388)
Q Consensus       171 ~~~l~~~~~dg----------------------------------~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~  215 (388)
                       +.|++++.|+                                  .|++||+.+++....+... ....+...+..++|+
T Consensus       185 -~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S  263 (723)
T 1xfd_A          185 -TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA  263 (723)
T ss_dssp             -SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred             -CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence             5566665432                                  7999999888754444210 001135678999999


Q ss_pred             CCCCcEEEEeeC----CCceEEEECCCCCcceEEEec-ccCCee----EEEEccCCCEEEE--eeCCC------cEEEEE
Q 016522          216 GSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHG-HEGDVN----TVKFFPDGNRFGT--GSDDG------TCRLFD  278 (388)
Q Consensus       216 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~~~~i~----~~~~~~~~~~l~~--~~~dg------~i~i~d  278 (388)
                      | +++++++...    +..|.+||+.++ +....+.. +...+.    .++|+|||+.|+.  +..++      .|.+||
T Consensus       264 p-Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          264 T-STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             S-SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             C-CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            9 7778766543    357999999876 44444433 334443    7899999997775  44666      577777


Q ss_pred             C-CCCce--eeEeeeccCCCCCCCeEE-EEecCCCCEEEEEecC---CcEEEEEcccce--EEeeccCCCCCcCCCeeEE
Q 016522          279 I-RTGHQ--LQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSN---GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       279 ~-~~~~~--~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~  349 (388)
                      + ..+..  ...+...     ...+.. ++|+|+|+.|+..+.+   +.+++|++....  ....+... ..|...+..+
T Consensus       342 ~~~~~~~~~~~~l~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~  415 (723)
T 1xfd_A          342 SQPNSSNDNIQSITSG-----DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSA  415 (723)
T ss_dssp             SSCCSSSCCCCBSCCS-----SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEE
T ss_pred             ccCCCCccceeEeecC-----CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-ccCCCCeEEE
Confidence            3 43331  3333211     112444 6899999988766555   789999986432  22233100 0156778999


Q ss_pred             EECCCCCeEEEcc
Q 016522          350 GLSADGSALCTGS  362 (388)
Q Consensus       350 ~~~~~~~~l~s~~  362 (388)
                      +|+|||++|+...
T Consensus       416 ~~spdg~~l~~~~  428 (723)
T 1xfd_A          416 SFSHSMDFFLLKC  428 (723)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEc
Confidence            9999999887643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=1.1e-25  Score=220.14  Aligned_cols=281  Identities=12%  Similarity=0.092  Sum_probs=219.3

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      ....+.+|.+.+.++.|+++ .++++++.|+.+.||.+.. +.....+..+.. +...+|+|+|+.++.+ .++.|.+|+
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d  271 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFN  271 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEec
Confidence            44556899999999999998 6777888889999998653 444455554543 5677999999999887 489999999


Q ss_pred             CCCCCCCCCCCceeEEecc-----------cccceEEEEEE-eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          138 LNSPTDKDGNLPVSRMLSG-----------HKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      +....       .. .+..           |...+.+++|+ |+| ..+++++ ++.|.+|+..++.... +     ..+
T Consensus       272 ~~~~~-------l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-----~~~  335 (1045)
T 1k32_A          272 PDTEK-------IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-----PEP  335 (1045)
T ss_dssp             TTTCC-------EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-----SCC
T ss_pred             CCceE-------ee-eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-----cCC
Confidence            84321       11 2222           45578999999 997 4566666 7899999998876543 3     455


Q ss_pred             cc-CeEEEEeeCCCCcEEEEeeCCCceE-EEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          206 TA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       206 ~~-~i~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      .. .+..++|+  ++..++.++.++.+. +||+... . ...+.+|...+..++|+|||++|++++.++.|++||+.+++
T Consensus       336 ~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          336 LRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             SCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence            56 78999998  667777777788888 8898755 3 33444777889999999999999999999999999999888


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC----------cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .......     +...+..++|+|||++|++++.++          .|++||+.+++ ...+    ..|...+..++|+|
T Consensus       412 ~~~~~~~-----~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l----~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          412 PTVIERS-----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA----TTENSHDYAPAFDA  481 (1045)
T ss_dssp             EEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC----SCSSSBEEEEEECT
T ss_pred             eEEeccC-----CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe----eCCCcccCCceEcC
Confidence            7665533     223478999999999998887654          89999999887 4555    56788899999999


Q ss_pred             CCCeEEEccCCCeEEEecc
Q 016522          354 DGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       354 ~~~~l~s~~~dg~v~iw~~  372 (388)
                      ||++|++++.++...+|..
T Consensus       482 dG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          482 DSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             TSCEEEEEESCCCCCEECS
T ss_pred             CCCEEEEEecccCCcCcch
Confidence            9999999999888877763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=4.7e-25  Score=189.29  Aligned_cols=293  Identities=13%  Similarity=0.154  Sum_probs=191.9

Q ss_pred             CCCCCcccCCC---CceeeeccccccCCeeEEEeCCCCCeEEEEeCC-CcEEEEECC--CCCe--eeEeeeCCccEEEEE
Q 016522           45 QGRAPVSFGPT---DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNAL--TSQK--THAIKLPCAWVMTCA  116 (388)
Q Consensus        45 ~~~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~--~~~~--~~~~~~~~~~v~~~~  116 (388)
                      .+..+..|+..   ..+.... ..|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..+. .+..++
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   90 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS   90 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred             CCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence            34556667553   2233333 3477889999999999999888876 999999997  5553  33444444 688999


Q ss_pred             ECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceE
Q 016522          117 FSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRT  194 (388)
Q Consensus       117 ~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~  194 (388)
                      |+|+++++++++. ++.|.+|++..+.    .......... ...+.+++|+|++..+++++..++.|.+||+.+ ++..
T Consensus        91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNAGNVSVTRLEDGL----PVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTE----EEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEECCCCc----cccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            9999998877665 8889999995211    1112333333 345888999999854444444899999999987 5443


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcE-EEEeeCCCceEEEECCCCC-cc--eEEEec----c--cCCeeEEEEccCCCE
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRM-FVSGSCDSTARLWDTRVAS-RA--VRTFHG----H--EGDVNTVKFFPDGNR  264 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~-~~--~~~~~~----~--~~~i~~~~~~~~~~~  264 (388)
                      ..............+..++|+| ++++ ++++..++.|.+||+.... ..  ......    +  ...+..++|+|++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            2210001123345788999999 5654 4555588999999996421 11  222221    1  234668999999988


Q ss_pred             EEE-eeCCCcEEEEECCC--Cc--eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcc--cceE--Eee
Q 016522          265 FGT-GSDDGTCRLFDIRT--GH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LAKV--VLN  334 (388)
Q Consensus       265 l~~-~~~dg~i~i~d~~~--~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~  334 (388)
                      |++ +..++.|.+||+..  +.  .+..+..     . ..+..++|+|+|++|++++ .++.|.+|++.  +++.  +..
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~  318 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPT-----E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR  318 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecC-----C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence            875 44789999999983  22  2222211     1 1278899999999888887 57999999554  5533  333


Q ss_pred             ccCCCCCcCCCeeEEEECCCCC
Q 016522          335 LGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      +    .. .....+++|.++.+
T Consensus       319 ~----~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          319 Y----AV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             E----EC-SSSCCEEEEEEEC-
T ss_pred             c----cc-CCCCeeEEEEcccC
Confidence            3    11 24566778876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=3e-25  Score=217.09  Aligned_cols=307  Identities=12%  Similarity=0.046  Sum_probs=223.0

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC------CcEEEEECCCCCeeeEeeeCCccE-------EE
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWV-------MT  114 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~v-------~~  114 (388)
                      ....|+.... ..+.+.+|.+.|.+++|||||++||+++.+      ..|++||+.+++ ...+..|...+       ..
T Consensus        34 ~l~~~~~~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~  111 (1045)
T 1k32_A           34 DLWEHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDV  111 (1045)
T ss_dssp             EEEEEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEE
T ss_pred             cEEEEECCCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccc
Confidence            3444555443 356778899999999999999999988653      379999988765 56677788778       89


Q ss_pred             EEECCCCCEEEEeeCC------CcEEEEeCCCCCCCC---CC----------------------C---------------
Q 016522          115 CAFSPTGQSVACGGLD------SVCSIFNLNSPTDKD---GN----------------------L---------------  148 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~---~~----------------------~---------------  148 (388)
                      ++|+|||+.+++++.+      ..|.+|++.++....   ..                      .               
T Consensus       112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~  191 (1045)
T 1k32_A          112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  191 (1045)
T ss_dssp             EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence            9999999977777644      357777775532100   00                      0               


Q ss_pred             --ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEe-----------eccc-------------
Q 016522          149 --PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVF-----------GGEF-------------  201 (388)
Q Consensus       149 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~-----------~~~~-------------  201 (388)
                        .....+.+|...+.++.|+++  .++++++.|+.+.+|.+.. +.....+           ....             
T Consensus       192 ~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~  269 (1045)
T 1k32_A          192 NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYI  269 (1045)
T ss_dssp             ETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEE
T ss_pred             CCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEE
Confidence              011233567888889999875  5677778888888887542 1111111           0000             


Q ss_pred             ----------ccC-----------CccCeEEEEee-CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEE
Q 016522          202 ----------QSG-----------HTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF  258 (388)
Q Consensus       202 ----------~~~-----------~~~~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~  258 (388)
                                ...           +...+.+++|+ | +++.+++++ ++.|.+|+.... . ...+..|.. .+..++|
T Consensus       270 ~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~  345 (1045)
T 1k32_A          270 FNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLRIRYVRRGG  345 (1045)
T ss_dssp             ECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSCEEEEEECS
T ss_pred             ecCCceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCcceEEeeeE
Confidence                      000           12257888999 8 777777776 788999988755 2 344566777 8999999


Q ss_pred             ccCCCEEEEeeCCCcEE-EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          259 FPDGNRFGTGSDDGTCR-LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      + +|+.|++++.++.+. +||+.+++.....      .+...+..++|+|+|++|++++.++.|++||+.+++....+  
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~--  416 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDYRTGKAEKFE------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE--  416 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEETTTCCEEECC------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             c-CCCeEEEEECCCceEEEEECCCCCceEec------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec--
Confidence            9 999999999888898 9999876543322      12235899999999999999999999999999998877666  


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCC----------eEEEeccc
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDT----------NLKVSLHY  373 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------~v~iw~~~  373 (388)
                        ..|...+.+++|+|||++|++++.++          .|++|+..
T Consensus       417 --~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          417 --RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             --ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             --cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence              57888999999999999999887654          89999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.3e-25  Score=211.37  Aligned_cols=276  Identities=12%  Similarity=0.094  Sum_probs=193.9

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-eEeeeCC-----------------ccEEEEEECCCCCEEEEeeCCC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPC-----------------AWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      +..+.|.  |+.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|+ +.++.+. ++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            5567788  66777788888 8 9999998873 3333332                 45999999999 6666553 59


Q ss_pred             cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----CceEEEeecccccCCc
Q 016522          132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHT  206 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~  206 (388)
                      .+++||+.++.        ...+..+...+.+++|+|+| +.++++ .++.|++||+.+     ++.....     ..+.
T Consensus       102 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~-----~~~~  166 (706)
T 2z3z_A          102 GLVGFDMLARK--------VTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVT-----IDGT  166 (706)
T ss_dssp             EEEEEETTTTE--------EEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESC-----SCCB
T ss_pred             EEEEEECCCCc--------eEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEec-----cCCC
Confidence            99999998743        23444566778889999998 456664 679999999998     7655433     2222


Q ss_pred             c--------------CeEEEEeeCCCCcEEEEee---------------------------------CCCceEEEECCCC
Q 016522          207 A--------------DVLSVSISGSNSRMFVSGS---------------------------------CDSTARLWDTRVA  239 (388)
Q Consensus       207 ~--------------~i~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~  239 (388)
                      .              .+.++.|+| ++++|++++                                 .+..|.+||+.++
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~  245 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG  245 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred             CCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence            2              258899999 788888876                                 4467999999876


Q ss_pred             CcceEEE--ecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC--CCC
Q 016522          240 SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGR  310 (388)
Q Consensus       240 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  310 (388)
                       ......  ..|...+.+++|+|||++|++++.++     .|.+||+.+++....+...........+..++|+|  +|+
T Consensus       246 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          246 -KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             -EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred             -ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence             332222  24667799999999999999987765     89999999884444443222221112346789999  999


Q ss_pred             EEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeE-EEECCCCCeEEEccCC-C--eEEEecc
Q 016522          311 LLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T--NLKVSLH  372 (388)
Q Consensus       311 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d-g--~v~iw~~  372 (388)
                      +++++..+|.+++|++. ++..+..+    ..+...+.. ++|+|+|+.|+.++.+ +  .+.||..
T Consensus       325 ~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          325 FIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             EEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             EEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            99999999999999876 56666666    567777876 7999999887665544 4  3555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=5.9e-24  Score=183.87  Aligned_cols=284  Identities=10%  Similarity=0.010  Sum_probs=187.7

Q ss_pred             CCeEEEEe----CCCcEEEEEC--CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCC
Q 016522           79 RNRIVSAS----QDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        79 ~~~l~t~~----~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~  148 (388)
                      ..+++.|+    .++.|.+|++  .+++.......+...+..++|+|+|++|++++.+    +.|.+|+++...   +..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcE
Confidence            33555553    4568999866  4565443333366678889999999999998875    799999987631   112


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec----cc-----ccCCccCeEEEEeeCCCC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG----EF-----QSGHTADVLSVSISGSNS  219 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~-----~~~~~~~i~~~~~~~~~~  219 (388)
                      ........+......+++  ++..++++...++.|.+|++.....+.....    ..     ...+...+.+++|+| ++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg  166 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DG  166 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CC
Confidence            233333444556667777  5544445555789999999975432221100    00     011233468899999 66


Q ss_pred             c-EEEEeeCCCceEEEECCCCCc----c-e-------EEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCcee
Q 016522          220 R-MFVSGSCDSTARLWDTRVASR----A-V-------RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL  285 (388)
Q Consensus       220 ~-~l~~~~~dg~i~i~d~~~~~~----~-~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  285 (388)
                      + +++++..++.|.+|++.....    . +       .....+...+..++|+|+|+++++++ .++.|.+|++.++...
T Consensus       167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence            6 445555588999999876532    1 1       11223445678999999999887777 6899999999876543


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecC--CcEEEEEcc--cce--EEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      .................++|+|+|++|+++..+  +.|.+|++.  +++  .+..+    .. ...+.+++|+|||++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----~~-g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ----LT-GIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE----EC-SSCCCEEEECTTSCEEE
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe----cC-CCCCceEEECCCCCEEE
Confidence            322222222223346899999999998777665  789999985  344  33333    22 45788999999999888


Q ss_pred             Ecc-CCCeEEEeccc
Q 016522          360 TGS-WDTNLKVSLHY  373 (388)
Q Consensus       360 s~~-~dg~v~iw~~~  373 (388)
                      +++ .++.|.+|...
T Consensus       322 ~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          322 VACRDTNVIQIFERD  336 (361)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEEE
Confidence            887 67999998654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1.3e-24  Score=191.63  Aligned_cols=299  Identities=12%  Similarity=0.070  Sum_probs=197.8

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----------CeeeE-----eeeCCccEEEEEECCCCCEEE----Ee
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----------QKTHA-----IKLPCAWVMTCAFSPTGQSVA----CG  127 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~  127 (388)
                      ...++.+++++++.++++++.++ +++|+....          .....     ...+...|.+++|+|+|++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999887 888875211          01110     112345699999999999999    78


Q ss_pred             eCCCcEEEEeCCCCCC----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          128 GLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       128 ~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      +.|+.|++||+.+...    ..........+.+|...|.+++|+|+++.++++++.||.|++||++++......     .
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----L  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----E
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----c
Confidence            8999999999875310    001112245567899999999999986688999999999999999998665544     5


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------cCCeeEEEEccCCCEEEEee-CCC---
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------EGDVNTVKFFPDGNRFGTGS-DDG---  272 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~dg---  272 (388)
                      .|...+.+++|+| ++++|++|+.||.|++||.+ . .....+..|       ...|.+++|++++.++++.+ .||   
T Consensus       190 ~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          190 PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            6888999999999 78999999999999999998 3 444444433       23789999999887775533 443   


Q ss_pred             ---cEEEEECCCCce--eeEeeeccCC-----CCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccc---eEEe-----
Q 016522          273 ---TCRLFDIRTGHQ--LQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLA---KVVL-----  333 (388)
Q Consensus       273 ---~i~i~d~~~~~~--~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~-----  333 (388)
                         .+++|+++....  ...+......     ....+-..+.+-++.+++++++. .+.|.++.....   -...     
T Consensus       267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~  346 (434)
T 2oit_A          267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDS  346 (434)
T ss_dssp             SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred             CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccc
Confidence               389999986531  1111111111     11112223334467676666554 345666653321   0001     


Q ss_pred             ---eccCCCCCcCCCeeEEEECC---------------CCCeEEEccCCCeEEEeccce
Q 016522          334 ---NLGSLQNSHEGRITCLGLSA---------------DGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       334 ---~~~~~~~~~~~~v~~~~~~~---------------~~~~l~s~~~dg~v~iw~~~~  374 (388)
                         .+..........+..+++.-               -...|..-+.||.+..|....
T Consensus       347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence               11111112233344444431               124678888999999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1e-23  Score=181.39  Aligned_cols=274  Identities=9%  Similarity=0.035  Sum_probs=180.2

Q ss_pred             CCCcEEEEECC--CCCeee-EeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522           87 QDGRLIVWNAL--TSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (388)
Q Consensus        87 ~dg~v~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      .++.|.+|++.  +++... ....+...+..++|+|+|+ +++++.   ++.|.+|++..+.     .........+...
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~   87 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTP   87 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCC
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCC
Confidence            34567777654  454432 2334456678899999999 555544   6899999996533     2233344456778


Q ss_pred             eEEEEEEeCCCceEEEee-CCCeEEEEecCC-Cce--EEEeecccc----cCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522          161 VSCCQYVPDEDTHLITSS-GDQTCVLWDITT-GLR--TSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~-~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  232 (388)
                      +..++|+|++. ++++++ .++.|.+||+.. +..  +..+.....    ......+.+++|+| +++++++...++.|.
T Consensus        88 p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~  165 (347)
T 3hfq_A           88 PAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVY  165 (347)
T ss_dssp             CSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred             CEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEE
Confidence            88999999985 455555 789999999963 222  222211000    01223588999999 556777777788999


Q ss_pred             EEECCCCCcce--EEEecc-cCCeeEEEEccCCCEEEE-eeCCCcEEEEECCC--CceeeEeeeccCC---CCCCCeEEE
Q 016522          233 LWDTRVASRAV--RTFHGH-EGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT--GHQLQVYYQQHGE---NEIPHVTSI  303 (388)
Q Consensus       233 i~d~~~~~~~~--~~~~~~-~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~---~~~~~i~~~  303 (388)
                      +||+.......  ..+..+ ...+..++|+|+|+++++ +..++.|.+|++..  ++...........   .....+..+
T Consensus       166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  245 (347)
T 3hfq_A          166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI  245 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred             EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence            99998332222  122222 236788999999996665 55788999999874  4322111111101   111347889


Q ss_pred             EecCCCCEEEE-EecCCcEEEEEccc---ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEecc
Q 016522          304 AFSISGRLLFA-GYSNGDCYVWDTLL---AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLH  372 (388)
Q Consensus       304 ~~~~~~~~l~~-~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~  372 (388)
                      +|+|+|++|++ ...++.|.+|++..   .+.+..+    ..+...+..++|+|||++|++++. ++.|.+|..
T Consensus       246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          246 RLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI----STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE----ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE----ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            99999998755 45588999999862   2444444    345567899999999998888775 499999954

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=2.2e-24  Score=184.60  Aligned_cols=266  Identities=12%  Similarity=0.089  Sum_probs=197.0

Q ss_pred             cCCCCCcccCCCCceeeecccccc-C-CeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCC-----ccEEEE
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHA-G-KVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTC  115 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~-~-~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~  115 (388)
                      ..+.....|++...+....+.... . .+.+++|+|+++++ ++++.++.|.+||+.+++.+..+....     ..+..+
T Consensus         8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B            8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence            445667778888888887776332 2 58899999999866 455667899999999999887776432     246789


Q ss_pred             EECCCCCEEEEee------------CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522          116 AFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC  183 (388)
Q Consensus       116 ~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  183 (388)
                      +|+|+|+++++++            .++.|.+||+.++.       ....+.. ...+.+++|+|++. +++++  ++.|
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~-~l~~~--~~~i  156 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFEA-PRQITMLAWARDGS-KLYGL--GRDL  156 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEEC-CSSCCCEEECTTSS-CEEEE--SSSE
T ss_pred             EECCCCCEEEEEecccccccccccccCceEEEEECCCCc-------EEEEEeC-CCCcceeEECCCCC-EEEEe--CCeE
Confidence            9999999998886            57999999998643       3333333 34577889999985 45555  6889


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCC-----------------------ceEEEECCCC
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS-----------------------TARLWDTRVA  239 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~  239 (388)
                      .+||+.+++....+...   .....   +.|+| ++..++..+ .++                       .|.+||+.+.
T Consensus       157 ~~~d~~~~~~~~~~~~~---~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQ---SWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             EEEETTTTEEEEEECST---TTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EEEECCCCcEeeeeecc---ccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            99999999887766321   11122   26777 444443333 232                       4689999877


Q ss_pred             CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      ......+..+...+.+++|+|++++++++  ++.|.+||+.+++....+....      .+.+++|+|+|++|++++.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSS
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC------ceeeEEECCCCCEEEEEcCCC
Confidence            43333445566678899999999999988  7899999999988776664322      368899999999999998999


Q ss_pred             cEEEEEcccceEEeec
Q 016522          320 DCYVWDTLLAKVVLNL  335 (388)
Q Consensus       320 ~i~i~d~~~~~~~~~~  335 (388)
                      .|.+||+.+++.+..+
T Consensus       302 ~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          302 DLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             cEEEEECcCCcEEEEE
Confidence            9999999999888776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.8e-23  Score=179.86  Aligned_cols=271  Identities=11%  Similarity=0.148  Sum_probs=180.5

Q ss_pred             ccCCCCceeee-ccccccCCeeEEEeCCCCCeEEEEeC---CCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEE
Q 016522           51 SFGPTDLVCCR-TLQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSV  124 (388)
Q Consensus        51 ~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~l~t~~~---dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  124 (388)
                      .|++...+... ....+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+|+|++|
T Consensus        22 ~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l  100 (347)
T 3hfq_A           22 TLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLV  100 (347)
T ss_dssp             EEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEE
T ss_pred             EEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEE
Confidence            34554443322 3345667889999999998 555544   6899999997665  334444566778899999999988


Q ss_pred             EEee-CCCcEEEEeCCCCCCCCCCCceeEEecc---------cccceEEEEEEeCCCceEEEeeCCCeEEEEecC-CCce
Q 016522          125 ACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLR  193 (388)
Q Consensus       125 ~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~  193 (388)
                      ++++ .++.+.+|++....    ..........         +...+.+++|+|++. ++++...++.|.+||+. ++..
T Consensus       101 ~~~~~~~~~v~v~~~~~~g----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A          101 YSANYHKGTAEVMKIAADG----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             EEEETTTTEEEEEEECTTS----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE
T ss_pred             EEEeCCCCEEEEEEeCCCC----CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE
Confidence            8887 67899999996422    1112222211         123478899999986 77777888999999998 4443


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcc---eEEEeccc------CCeeEEEEccCCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHE------GDVNTVKFFPDGN  263 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~  263 (388)
                      .......  ......+..++|+| +++ +++++..++.|.+|++......   ...+....      ..+..++|+|+|+
T Consensus       176 ~~~~~~~--~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          176 SEQSVLT--MEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             EEEEEEE--CCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             EEeeeEE--cCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            3221111  22334678899999 666 5555677899999998752112   22222222      3478899999999


Q ss_pred             EEE-EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-CcEEEE--EcccceEE
Q 016522          264 RFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVW--DTLLAKVV  332 (388)
Q Consensus       264 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~  332 (388)
                      +|+ +...++.|.+|++.............  .+...+..++|+|+|++|++++.+ +.|.+|  |..+++..
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            874 55568999999997332222221111  112247899999999998888765 899999  44556544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=1.6e-24  Score=189.36  Aligned_cols=301  Identities=12%  Similarity=0.013  Sum_probs=204.3

Q ss_pred             cCCCCceeeeccccccCCeeE-----EEeCCCCCeEEEEeC-CC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           52 FGPTDLVCCRTLQGHAGKVYS-----LDWTSERNRIVSASQ-DG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      .++........+..|......     .+|+|||++|+.++. +|  .|.+||+.+++.......+...+...+|+|+|+.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            455667777888888877666     899999999998887 66  4888899888877766666655556789999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE--EeCCCceEEE----------------------eeC
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLIT----------------------SSG  179 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~----------------------~~~  179 (388)
                      |+.++.++.+++||+.++.       .......+...+....|  ++++ .+++.                      ...
T Consensus        95 l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCC
Confidence            9999999999999998854       33344444454444443  6776 44442                      234


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEeccc--C
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE--G  251 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~  251 (388)
                      ++.|.+||+.+++.....      .+...+..+.|+|.+++.++....+      ..|.++|....  ....+..+.  .
T Consensus       167 ~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~  238 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGE  238 (388)
T ss_dssp             CEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTE
T ss_pred             cceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCc
Confidence            578999999998765543      4456788999998445556555443      36777777643  334444444  2


Q ss_pred             CeeEEEEccCCCEEEEeeC-CC----cEEEEECCCCceeeEeeeccCCCCC-CCeEEEEecCCCCEEEEE---------e
Q 016522          252 DVNTVKFFPDGNRFGTGSD-DG----TCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG---------Y  316 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~---------~  316 (388)
                      .+..+.|+|||+.|+..+. ++    .|.+||+.+++......... ..+. .......|+|+|+.|+..         .
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred             ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            5778899999998766443 22    39999999887543322111 0000 001123689999977754         4


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCC-----------CeeEEEECCCCCeEEEcc-CCCeEEEeccce
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKVSLHYY  374 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~  374 (388)
                      .+..|++||+.+++.....     .+..           .+.+++|+|||+.|+.++ .+|...||....
T Consensus       318 ~~~~i~~~d~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVA-----RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEE-----ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             CCCEEEEEeccCCceEEec-----cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            4568999999887754322     3333           578889999999887655 588888887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=1.6e-22  Score=174.91  Aligned_cols=275  Identities=10%  Similarity=0.086  Sum_probs=181.7

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCC----CcEEEEECCC--CCe--eeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEE
Q 016522           66 HAGKVYSLDWTSERNRIVSASQD----GRLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF  136 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw  136 (388)
                      |...+..++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+...+..+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            77788999999999999998876    7999998865  332  2333335556778888  788777766 57899999


Q ss_pred             eCCCCCCCCCCCceeEEec--------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce------E-EE-eecc
Q 016522          137 NLNSPTDKDGNLPVSRMLS--------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR------T-SV-FGGE  200 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~------~-~~-~~~~  200 (388)
                      ++....... .........        .+...+.+++|+|++..++++...++.|.+|++.....      + .. ....
T Consensus       126 ~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          126 PIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            997533111 111111111        12234578999999865566666789999998875431      1 11 0000


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcc--eEEEe---cccCCeeEEEEccCCCEEEEeeCC--C
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA--VRTFH---GHEGDVNTVKFFPDGNRFGTGSDD--G  272 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g  272 (388)
                      ........+..++|+| +++++++++ .++.|.+||+..+ ..  +..+.   .+......++|+|+|++|+++..+  +
T Consensus       205 ~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             eecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence            1134456678999999 676665555 6899999999854 22  22222   223446799999999998776654  8


Q ss_pred             cEEEEECC--CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEE--cccceEEeeccCCCCCcCCCee
Q 016522          273 TCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWD--TLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       273 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                      .|.+|++.  +++.........    ...+..++|+|+|++|++++ .++.|.+|+  ..+++......   ..+...+.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~---~~~~~~p~  355 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK---DIKVDKPV  355 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC---CEECSSEE
T ss_pred             EEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce---eeeCCCCe
Confidence            99999996  344222211111    12478899999999988887 568899964  45676654432   23456788


Q ss_pred             EEEEC
Q 016522          348 CLGLS  352 (388)
Q Consensus       348 ~~~~~  352 (388)
                      |+.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.1e-22  Score=175.27  Aligned_cols=253  Identities=14%  Similarity=0.139  Sum_probs=192.5

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCcc---------EEEEE
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAW---------VMTCA  116 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~  116 (388)
                      ..+..|++...+....+.. ...+.+++|+|+|++++ +...++.|.+||..+++.+..+..+...         +.+++
T Consensus        69 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             ccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            3466788888877777764 34588999999999555 5555799999999999988888765432         78999


Q ss_pred             ECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522          117 FSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT  194 (388)
Q Consensus       117 ~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  194 (388)
                      |+|+++++++++  .++.|.+||..+++       ....+..+...+.+++|+|++ ..+++++.++.|.+||+.+++..
T Consensus       148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~  219 (353)
T 3vgz_A          148 ADDATNTVYISGIGKESVIWVVDGGNIK-------LKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL  219 (353)
T ss_dssp             EETTTTEEEEEEESSSCEEEEEETTTTE-------EEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE
T ss_pred             ECCCCCEEEEEecCCCceEEEEcCCCCc-------eEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE
Confidence            999999887776  47889999998754       445555455668889999997 56777788999999999999888


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCC
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDG  272 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  272 (388)
                      ..+.... ..+...+..++|+| +++ ++++...++.|.+||+.+. +.+..+....  ...++|+|+++++++++ .++
T Consensus       220 ~~~~~~~-~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          220 SRKKLLD-DGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE--SLAVLFNPARNEAYVTHRQAG  294 (353)
T ss_dssp             EEEECCC-SSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS--CCCEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCC-CCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC--CceEEECCCCCEEEEEECCCC
Confidence            7764211 23455688899999 555 4444555699999999877 5555555433  36799999999666555 689


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      .|.+||+.+++....+....      .+..++|+|+|++|+++..++
T Consensus       295 ~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          295 KVSVIDAKSYKVVKTFDTPT------HPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEETTTTEEEEEEECCS------EEEEEEECTTSCEEEEEEECC
T ss_pred             eEEEEECCCCeEEEEEecCC------CCCeEEEcCCCCEEEEEEccc
Confidence            99999999988877664422      378999999999888776664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=2.8e-23  Score=178.67  Aligned_cols=273  Identities=10%  Similarity=0.054  Sum_probs=184.7

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      .+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++       
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-------   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-------   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence            45688888899999999999999999998888877654 2478899999998665 45568999999998754       


Q ss_pred             eeEEecc-c-----ccceEEEEEEeCCCceEEEeeCC------------CeEEEEecCCCceE---EEeecccccCCccC
Q 016522          150 VSRMLSG-H-----KGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRT---SVFGGEFQSGHTAD  208 (388)
Q Consensus       150 ~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~v~i~d~~~~~~~---~~~~~~~~~~~~~~  208 (388)
                      ....+.. +     ...+..++|+|+| +++++++.+            +.|.+||+.+++..   ..+      .+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~  149 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQ  149 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSS
T ss_pred             EEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCc
Confidence            3333332 2     2347889999997 456666654            89999999885432   222      23346


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC------------------------CeeEEEEccCCCE
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------------------------DVNTVKFFPDGNR  264 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~  264 (388)
                      +.+++|+| +++++ +++  +.|.+||+.+. +....+..+..                        ....+++++++..
T Consensus       150 ~~~~~~s~-dg~l~-~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          150 VYLMRAAD-DGSLY-VAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             CCCEEECT-TSCEE-EES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             ccceeECC-CCcEE-Ecc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence            88899999 66644 443  34999999876 55555443210                        2344666654421


Q ss_pred             EEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          265 FGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       265 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      ..... ....+..+|..+++....-...    ....+..++|+| ++++++++  ++.|.+||+.+++.+..+.     .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~  293 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEFAD----LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----L  293 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEE----CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----C
T ss_pred             CccccccceeEEEEeccCCcEEeccccc----CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----C
Confidence            11100 0111222444444322111111    223478999999 99999888  8899999999998877762     2


Q ss_pred             CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...+.+++|+|+|++|++++.++.|.+|+...
T Consensus       294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            34578999999999999988899999999753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=8.2e-24  Score=186.42  Aligned_cols=228  Identities=14%  Similarity=0.073  Sum_probs=164.1

Q ss_pred             CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC---CCC-Ccee----EEecccccc
Q 016522           89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK---DGN-LPVS----RMLSGHKGY  160 (388)
Q Consensus        89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~-~~~~----~~~~~~~~~  160 (388)
                      +.+++|+... .      .+...+..+++++++.++++++.++ +++|+.......   ... ....    .....+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4688876421 1      2334578899999999999999888 888876421100   000 0000    011235678


Q ss_pred             eEEEEEEeCCCceEE----EeeCCCeEEEEecCCC--------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          161 VSCCQYVPDEDTHLI----TSSGDQTCVLWDITTG--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       161 v~~~~~~~~~~~~l~----~~~~dg~v~i~d~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      |.+++|+|++ .+|+    +++.|+.|++||+.++        +.+..+.  ...+|...|.+++|+|.++.+|++++.|
T Consensus        95 v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           95 IHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             EEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             ccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            9999999997 5666    8899999999998764        1111111  1156899999999999658999999999


Q ss_pred             CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEec
Q 016522          229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFS  306 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~  306 (388)
                      |+|++||+++. .......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.....  ..+...+.+++|+
T Consensus       172 g~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          172 GSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             SCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            99999999987 5555666789999999999999999999999999999998 555544433221  1123368999999


Q ss_pred             CCCCEEEEE-ecCC------cEEEEEcccc
Q 016522          307 ISGRLLFAG-YSNG------DCYVWDTLLA  329 (388)
Q Consensus       307 ~~~~~l~~~-~~dg------~i~i~d~~~~  329 (388)
                      +++.++++. ..+|      .+++|++...
T Consensus       250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            988877553 3343      3899998754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=198.65  Aligned_cols=276  Identities=12%  Similarity=0.053  Sum_probs=190.4

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc---cEEEEEECCCCCEEEEeeC---------CCcEEEEeCC
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGL---------DSVCSIFNLN  139 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~vw~~~  139 (388)
                      +++|+|+|++++ .+.|+.|++||+.+++....+..+..   .+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            789999996555 45699999999999988776665533   3889999999999998876         7899999998


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc------------
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA------------  207 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------------  207 (388)
                      ++....     ...+   ...+..++|+|+|. .|+.+. ++.|++||+.++.......    .++..            
T Consensus        99 ~g~~~~-----~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~----~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A           99 NGEFVR-----GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITF----NGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             TTEECC-----SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCC----CCBTTTEEESSCCHHHH
T ss_pred             CCcccc-----ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEec----CCCcCCeEcccccceee
Confidence            754200     0111   24578899999984 566664 7899999998887654321    12222            


Q ss_pred             -----CeEEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEECCCCCcce---E-
Q 016522          208 -----DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAV---R-  244 (388)
Q Consensus       208 -----~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~---~-  244 (388)
                           ...+++|+| +++.|+.++.|.                                  .|++||+..+ ...   . 
T Consensus       165 ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~  242 (719)
T 1z68_A          165 EEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEV  242 (719)
T ss_dssp             HHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEEC
T ss_pred             eecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEc
Confidence                 125899999 888888876542                                  7889999866 321   1 


Q ss_pred             ----EEecccCCeeEEEEccCCCEEEEeeCC----CcEEEEE----CCCCceeeEee---eccCCCCCCCeE-----EEE
Q 016522          245 ----TFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTGHQLQVYY---QQHGENEIPHVT-----SIA  304 (388)
Q Consensus       245 ----~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~~~i~-----~~~  304 (388)
                          .+.+|...+..++|+||++++++....    ..|.+||    +.+++......   ..    +...+.     .+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~  318 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES----RTGWAGGFFVSTPV  318 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC----SSSCSSSSSCCCCE
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc----CCceEccccCCccE
Confidence                123577789999999998877774433    2488899    77766544331   11    112233     678


Q ss_pred             ecCCCCEEEE--EecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-----CeEEEeccce
Q 016522          305 FSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVSLHYY  374 (388)
Q Consensus       305 ~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~  374 (388)
                      |+|+|+.++.  +..+|  .|++||+.+++. ..+    ..+...+..+.+. +++.|+..+.+     +.+++|....
T Consensus       319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             ECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec----ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            9999995554  44455  577778776653 334    3455567777777 77777666554     8899998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=9.5e-23  Score=187.56  Aligned_cols=233  Identities=9%  Similarity=0.011  Sum_probs=169.8

Q ss_pred             CccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeC---CCeE
Q 016522          109 CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTC  183 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~v  183 (388)
                      ..+|.+++|+|||+.|++++. ||.+.||++.++.        ...+..|. ..+..+.|+|+  +++++++.   +...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC--eEEEEeccCCCCcce
Confidence            346999999999999999887 9999999985532        33444454 68999999987  56776664   4545


Q ss_pred             EEEecCC--CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC
Q 016522          184 VLWDITT--GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  261 (388)
Q Consensus       184 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (388)
                      .+|.+..  ......+      .........+|+|+....+++.+.++.+.+||+.++ +... +..+..  .+++|+||
T Consensus        91 ~l~~~~~~~~g~~~~l------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~-l~~~~~--~~~~~spD  160 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQRL------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRE-LARLPG--FGFVSDIR  160 (582)
T ss_dssp             EEEEEETTSTTCCEEC------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEE-EEEESS--CEEEEEEE
T ss_pred             EEEEEeccCCCccccc------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEE-eecCCC--ceEEECCC
Confidence            5654433  2111222      122234456778744455555555556669999866 3333 333333  88999999


Q ss_pred             CCEEEEeeCC----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC--cEEEEEcccceEEeec
Q 016522          262 GNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNL  335 (388)
Q Consensus       262 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  335 (388)
                      |++|++++.+    +.|++||+.+++.. .+..     +...+..++|+|||+.|+++..++  .|++||+.+++.. .+
T Consensus       161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~  233 (582)
T 3o4h_A          161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS-----GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL  233 (582)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTTCCCE-EECC-----SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred             CCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec-----CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence            9999988877    78999999887754 3322     223479999999999999888888  8999999988877 55


Q ss_pred             cCCCCCcCCCeeEEE--------ECCCCCeEEEccCCCeEEEecc
Q 016522          336 GSLQNSHEGRITCLG--------LSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                          ..|...+..++        |+|||.++++++.||.+++|..
T Consensus       234 ----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          234 ----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                56777777777        9999999999999999999987

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.90  E-value=1.4e-22  Score=177.39  Aligned_cols=293  Identities=12%  Similarity=0.009  Sum_probs=192.1

Q ss_pred             CCCCceeeeccccccCC-----eeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522           53 GPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV  124 (388)
Q Consensus        53 ~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  124 (388)
                      ++........+..+...     +.+++|+|||++|+.+...   ..|.+||+.+++.......+......+.|+|+|+.|
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l   95 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF   95 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence            45555566666655443     7889999999998876543   368888988876544333332222337899999999


Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEE-------------------EEEEeCCCceEEEe-----eCC
Q 016522          125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLITS-----SGD  180 (388)
Q Consensus       125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~d  180 (388)
                      +.++.++.|.+|++.++.       .......+......                   +.|+|++.. ++.+     ..+
T Consensus        96 ~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~  167 (396)
T 3c5m_A           96 FYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYHTNPT  167 (396)
T ss_dssp             EEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHHTCCC
T ss_pred             EEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcc-eeeeeeccCCCc
Confidence            999999999999998754       22223323222212                   245666533 3322     466


Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecc--cCC
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH--EGD  252 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~  252 (388)
                      ..|.+||+.+++.....      .+...+..+.|+|.++..++..+.+      ..|.+||+... . ...+..+  ...
T Consensus       168 ~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~  239 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGES  239 (396)
T ss_dssp             EEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEE
T ss_pred             ceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCcc
Confidence            78999999988765544      3456788999998445555544433      36888888644 2 2333322  225


Q ss_pred             eeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEe----------
Q 016522          253 VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY----------  316 (388)
Q Consensus       253 i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------  316 (388)
                      +..++|+|+|++|+.++.+     +.|.+||+.+++.......   .    ... +.|+| +|+++++++          
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P----PCS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C----SEE-EEEECSSSSEEEEEECCC-------
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C----CCC-CCccCCCCceEEEecCCcceeeccc
Confidence            7789999999988777654     4499999988765443221   1    133 88999 999888754          


Q ss_pred             ------cCCcEEEEEcccceEEeeccCCCCCcCC-----------CeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522          317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLKVSLHYY  374 (388)
Q Consensus       317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~  374 (388)
                            .++.|++||+.+++.. .+    ..+..           .+..++|+|||+.|+.++. ++...||....
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQ-KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCC-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cccccCCCCcEEEEecccCceE-Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence                  2468999999877642 22    12222           2566789999998877664 67778887543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.90  E-value=7e-21  Score=163.87  Aligned_cols=285  Identities=12%  Similarity=0.085  Sum_probs=202.9

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC----------CCcEEEEECCCCCeeeEeeeC------Cc
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLP------CA  110 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~------~~  110 (388)
                      .....|++.+.+...++..+..+  .++|+|||+++++++.          ++.|.+||..+++.+..+...      ..
T Consensus        31 ~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             CEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             CeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            45567888888888888887766  9999999999998863          678999999999998888754      23


Q ss_pred             cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ....++++|+|++|+++..  ++.|.+||+.+.+       .... +.. .+ ...+.+.|++...+++.+.||.+.+|+
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEE
Confidence            4668999999999999864  5799999998754       3333 322 11 223567787767788999999999999


Q ss_pred             cCC-CceEEEeec-ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-EEEec------c----cCCee
Q 016522          188 ITT-GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG------H----EGDVN  254 (388)
Q Consensus       188 ~~~-~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~------~----~~~i~  254 (388)
                      ... ++....... ........+ ..+...+ ++..++..+.++.+.++|+......+ ..+..      +    .....
T Consensus       180 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          180 LGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             ECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred             ECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence            865 444322110 000111122 1223344 44555566678999999987542211 11110      0    11122


Q ss_pred             EEEEccCCCEEEEeeC-----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          255 TVKFFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      .++|+|+++.++++..           .+.|.+||+.+++.+..+....       +..++|+|+|++|++++. +.|.+
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-SCEEE
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-CeEEE
Confidence            3789999888877643           3489999999999888775422       689999999999998886 99999


Q ss_pred             EEcccc--eEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          324 WDTLLA--KVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       324 ~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ||..++  +.+..+    ..+......++++|+|.
T Consensus       330 ~D~~t~~l~~~~~i----~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          330 YDISQPEPKLLRTI----EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECSSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred             EECCCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence            999999  998886    45677788999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=9.8e-22  Score=169.01  Aligned_cols=277  Identities=12%  Similarity=0.029  Sum_probs=186.3

Q ss_pred             ccCCCCCcccCCCCceeeecccccc-CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCC------ccEEE
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGHA-GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPC------AWVMT  114 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~  114 (388)
                      ...+.....|++.+.+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+....      ..+..
T Consensus        17 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           17 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred             eCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence            3455677789988888888877554 2588999999998654 55578999999999998887776433      23678


Q ss_pred             EEECCCCCEEEEeeCC------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          115 CAFSPTGQSVACGGLD------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      ++|+|+|+++++++.+            +.|.+||+.++...    ....... +...+.+++|+|++. ++ +++.  .
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~~~~s~dg~-l~-~~~~--~  167 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-MPRQVYLMRAADDGS-LY-VAGP--D  167 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-CCSSCCCEEECTTSC-EE-EESS--S
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeecc-CCCcccceeECCCCc-EE-EccC--c
Confidence            9999999999998865            89999999864311    1122222 234588899999985 44 4433  4


Q ss_pred             EEEEecCCCceEEEeecccccCC---------------cc----CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGH---------------TA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  243 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~---------------~~----~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  243 (388)
                      |.+||+.+++....+........               ..    ....++++++.............+..+|..+.....
T Consensus       168 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (349)
T 1jmx_B          168 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  247 (349)
T ss_dssp             EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence            99999999987776632110000               00    223344443110000000000111224444332222


Q ss_pred             EEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522          244 RTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  322 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (388)
                      ..+..+...+..++|+| ++++++++  ++.|.+||+.+++....+....      .+..++|+|+|++|++++.++.|.
T Consensus       248 ~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~v~  319 (349)
T 1jmx_B          248 QEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGGTFNDLA  319 (349)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEESBSSEEE
T ss_pred             cccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC------CccceEECCCCCEEEEecCCCeEE
Confidence            22333556788999999 99999988  8899999999988777665322      267899999999888888899999


Q ss_pred             EEEcccceEEeecc
Q 016522          323 VWDTLLAKVVLNLG  336 (388)
Q Consensus       323 i~d~~~~~~~~~~~  336 (388)
                      +||+.+++.+..+.
T Consensus       320 v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          320 VFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEeccccceeeeee
Confidence            99999998887763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=9.2e-23  Score=192.44  Aligned_cols=316  Identities=9%  Similarity=-0.004  Sum_probs=204.2

Q ss_pred             CCCCCcccCCCCceeeeccccccC---CeeEEEeCCCCCeEEEEeC---------CCcEEEEECCCCCeeeEeeeCCccE
Q 016522           45 QGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAWV  112 (388)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v  112 (388)
                      .+.....|+....+....+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++.+..... ...+
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~  112 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPI  112 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSB
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-Cccc
Confidence            355677888888887777776655   4999999999999998876         78999999998876311111 2458


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC--CceeEEecccccc---------eEEEEEEeCCCceEEEeeCCC
Q 016522          113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGY---------VSCCQYVPDEDTHLITSSGDQ  181 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg  181 (388)
                      ..++|+|||+.|+.+. ++.|++|++.++......  ......+.++...         ..+++|+|+| +.|++++.|.
T Consensus       113 ~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~  190 (719)
T 1z68_A          113 QYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFND  190 (719)
T ss_dssp             CCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEEC
T ss_pred             ccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECC
Confidence            8899999999999985 789999999875421000  0000011122222         2489999998 5677666442


Q ss_pred             ----------------------------------eEEEEecCCCceE--EEeec-ccccCCccCeEEEEeeCCCCcEEEE
Q 016522          182 ----------------------------------TCVLWDITTGLRT--SVFGG-EFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       182 ----------------------------------~v~i~d~~~~~~~--~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                                                        .|++||+.+++..  ..+.. .....+...+..++|+| ++.++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~  269 (719)
T 1z68_A          191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQ  269 (719)
T ss_dssp             TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEE
T ss_pred             CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEE
Confidence                                              7889999887642  11110 11135777899999999 5777776


Q ss_pred             eeCC----CceEEEE----CCCCCcceEEE----ecccCCee-----EEEEccCCCEEEE--eeCCC--cEEEEECCCCc
Q 016522          225 GSCD----STARLWD----TRVASRAVRTF----HGHEGDVN-----TVKFFPDGNRFGT--GSDDG--TCRLFDIRTGH  283 (388)
Q Consensus       225 ~~~d----g~i~i~d----~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~  283 (388)
                      ....    ..|.+||    ..++ .....+    ..|...+.     .+.|+|||+.|+.  ...+|  .|.+||+.+++
T Consensus       270 ~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          270 WLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             EeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            4433    2488899    6654 333223    35666676     8899999996654  44555  57777877665


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEccc--ce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL--AK-VVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      . ..+..     ....+..+.++ +++.|+..+.+     +..++|.+..  +. ....+.....+|...+..+.|+|++
T Consensus       349 ~-~~lt~-----~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg  421 (719)
T 1z68_A          349 A-IQITS-----GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA  421 (719)
T ss_dssp             C-EECSC-----SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG
T ss_pred             e-Eeccc-----CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC
Confidence            2 22221     12236677777 77777666554     7888888754  31 1223311112366778899999999


Q ss_pred             CeEEE-ccCC--CeEEEecc
Q 016522          356 SALCT-GSWD--TNLKVSLH  372 (388)
Q Consensus       356 ~~l~s-~~~d--g~v~iw~~  372 (388)
                      ++++. ++.+  ..+.+|+.
T Consensus       422 ~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          422 KYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             SSEEEEECCBSSCEEEEECS
T ss_pred             CEEEEEcCCCCCCeEEEEEC
Confidence            87774 3333  45666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=2.4e-21  Score=167.56  Aligned_cols=284  Identities=8%  Similarity=0.010  Sum_probs=181.4

Q ss_pred             eEEEEeCC--CcEEEEEC--CCCCeeeEee---eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC-CCCCCCCCCceeE
Q 016522           81 RIVSASQD--GRLIVWNA--LTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN-SPTDKDGNLPVSR  152 (388)
Q Consensus        81 ~l~t~~~d--g~v~iwd~--~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~  152 (388)
                      ++++|+..  +.|.+|++  .+++....-.   .....+..++|+|+|++|++++.+ .|.+|++. ++.     .....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-----~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-----IVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-----EEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-----EEEee
Confidence            34555543  46777765  4554322211   123467899999999999998888 99999986 432     11111


Q ss_pred             EecccccceEEEEEEeCCCc-eEEEee-------------CCCeEEEEecC-CCceEEEeecccccCCccCeEEEEeeCC
Q 016522          153 MLSGHKGYVSCCQYVPDEDT-HLITSS-------------GDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ....+ +.+.+++|+|+|.. +++++.             .+|.+.+|++. +++....+... ...+...+.+++|+| 
T Consensus        78 ~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~sp-  154 (365)
T 1jof_A           78 SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDP-  154 (365)
T ss_dssp             EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECT-
T ss_pred             EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECC-
Confidence            11111 23456889999743 344553             68999999997 45544333110 013456789999999 


Q ss_pred             CCcEEEEee-CCCceEEEECC-CCCc-ceEEEe--cccCCeeEEEEccCCCEEEEeeC-CCcEEEEECC--CCceee---
Q 016522          218 NSRMFVSGS-CDSTARLWDTR-VASR-AVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ---  286 (388)
Q Consensus       218 ~~~~l~~~~-~dg~i~i~d~~-~~~~-~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---  286 (388)
                      +++++++++ .++.|++||+. ++.. .+..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++...   
T Consensus       155 dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            777666655 46799999997 4421 122333  23566899999999999888775 6899999875  454321   


Q ss_pred             EeeeccCC--CCCC------CeEEEE-ecCCCCEEEEEecCC------cEEEEEcc-cceEEeeccCCCCCcCCCeeEEE
Q 016522          287 VYYQQHGE--NEIP------HVTSIA-FSISGRLLFAGYSNG------DCYVWDTL-LAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       287 ~~~~~~~~--~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      .+......  .+..      .+..++ |+|+|++|++++.+.      .|.+|++. +++........ ..+...+..++
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-~~~~~~~~~~a  313 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNA  313 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCC
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee-ecCCCCcccce
Confidence            12111100  1111      478899 999999888776432      79999986 55543311000 23444567889


Q ss_pred             ECC---CCCeEEEccCC-CeEEEeccce
Q 016522          351 LSA---DGSALCTGSWD-TNLKVSLHYY  374 (388)
Q Consensus       351 ~~~---~~~~l~s~~~d-g~v~iw~~~~  374 (388)
                      |+|   ||++|++++.+ +.|.+|....
T Consensus       314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          314 VSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            999   89999998864 9999998654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=1.3e-20  Score=162.97  Aligned_cols=252  Identities=11%  Similarity=0.052  Sum_probs=167.7

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC-CCCeeeEeeeC-CccEEEEEECCCCCE--EEEee-------------
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKLP-CAWVMTCAFSPTGQS--VACGG-------------  128 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------  128 (388)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34578899999999999999888 99999997 77654433221 123556899999994  45553             


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEec----ccccceEEEEEEeCCCceEEEe-eCCCeEEEEecC-CCceEEEeecccc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDIT-TGLRTSVFGGEFQ  202 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~-~~~~~~~~~~~~~  202 (388)
                      .+|.+.+|++....    .  ....+.    .+...+.+++|+|+|. +++++ ..++.|.+||+. +++......... 
T Consensus       117 ~~g~v~v~~~~~~g----~--~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-  188 (365)
T 1jof_A          117 FAGYGNVFSVSETG----K--LEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDA-  188 (365)
T ss_dssp             SCCEEEEEEECTTC----C--EEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-
T ss_pred             CCceEEEEccCCCC----c--CcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEec-
Confidence            68999999997421    1  222222    2456789999999985 45544 457899999998 665432211000 


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC-Ccce---EEEe-------cccC------CeeEEE-EccCCC
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-SRAV---RTFH-------GHEG------DVNTVK-FFPDGN  263 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~---~~~~-------~~~~------~i~~~~-~~~~~~  263 (388)
                      ..+...+..++|+| +++++++++ .++.|.+|+++.. ....   ..+.       +|..      .+..++ |+|||+
T Consensus       189 ~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          189 PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence            12356789999999 777776665 4789999987632 1221   1221       1222      478899 999999


Q ss_pred             EEEEeeCCC------cEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecC---CCCEEEEEecC-CcEEEEEcccc
Q 016522          264 RFGTGSDDG------TCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSN-GDCYVWDTLLA  329 (388)
Q Consensus       264 ~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d-g~i~i~d~~~~  329 (388)
                      +|+++..+.      .|.+|++. +++.........  .....+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~--~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP--TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE--CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee--cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            988776432      89999996 555432211010  0111256788999   89999998864 89999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=1.3e-20  Score=176.21  Aligned_cols=291  Identities=13%  Similarity=0.060  Sum_probs=198.2

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEE--eCCCcEEEEECCCCCeeeEeeeCCccEE---------EEEEC--CCCCE-EE
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVM---------TCAFS--PTGQS-VA  125 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~  125 (388)
                      ...+.+|...|..++|++++-++++.  +.++...||....+.....+..+...+.         ...|+  |||+. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            45678899999999999886666666  5688999999655555666666655555         55565  99998 77


Q ss_pred             EeeC-CCcEEEEeCC--C-CCCCCCCCceeEEecc-----cccceEEEEEEeCCCceEEEeeCC----------CeEEEE
Q 016522          126 CGGL-DSVCSIFNLN--S-PTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD----------QTCVLW  186 (388)
Q Consensus       126 ~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~i~  186 (388)
                      .++. +..|.++++.  . +.        ...+..     |...+..++|+|+| +.|++++.+          ..|++|
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV--------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC--------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEECCCCeEEEEcCCCCCCCC--------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence            6654 5667777765  1 21        233333     66788999999998 567766665          589999


Q ss_pred             ecCC------CceEEEeeccccc-CCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCC-CC--cceEEEec
Q 016522          187 DITT------GLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRV-AS--RAVRTFHG  248 (388)
Q Consensus       187 d~~~------~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~-~~--~~~~~~~~  248 (388)
                      |+.+      +.. ..+     . .+...+..++|+| +++.|+.++.+        ..|.+||+.. +.  ........
T Consensus       167 ~~~~~~~~~~~~~-~~l-----~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          167 PLDGSAAADRSAV-REL-----SDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             ETTSTTTTCGGGS-EES-----SCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ECCCCccccCCce-eEE-----EecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            9987      443 333     3 4456778899999 77888766644        3799999983 31  23333444


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCC--cEEEEECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      |...+..+.|+|||+++++++.++  .|.+||+.+++...........   .....+..++|+|+++++++++. +.+++
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            567899999999999888888888  6777776666544332211100   00111467889999999999988 99888


Q ss_pred             E--EcccceEEeeccCCCCCcCCCeeEE-EECCCCCeEEEccCCCeEEEecc
Q 016522          324 W--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       324 ~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      |  |+.+++ +..+    ..+...+..+ +++.+.-++++++.+....+|..
T Consensus       319 ~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          319 GILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence            8  555555 4555    4667777777 66544445555666766666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=1.4e-20  Score=177.74  Aligned_cols=279  Identities=10%  Similarity=0.046  Sum_probs=185.8

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-----EEEEEECCCCCEEEEeeCC---------CcEE
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---------SVCS  134 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~  134 (388)
                      ...+++|+|||.+++++  ||+|++||+.+++....+..+...     ...+.|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            46689999999888886  899999999999987777766532     2347899999999998875         5677


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc-------
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-------  207 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-------  207 (388)
                      +||+.++.        ...+..|.+.+...+|+|+|. .|+.+ .++.|++||+.++.......    .++..       
T Consensus        96 ~~d~~~~~--------~~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~----~g~~~~~~~g~~  161 (740)
T 4a5s_A           96 IYDLNKRQ--------LITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITW----TGKEDIIYNGIT  161 (740)
T ss_dssp             EEETTTTE--------ECCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCS----CCBTTTEEESBC
T ss_pred             EEECCCCc--------EEEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcC----CCCccceecCcc
Confidence            99999854        223556777899999999985 46655 46899999998877544321    12222       


Q ss_pred             ----------CeEEEEeeCCCCcEEEEeeCCC------------------------------------ceEEEECCC---
Q 016522          208 ----------DVLSVSISGSNSRMFVSGSCDS------------------------------------TARLWDTRV---  238 (388)
Q Consensus       208 ----------~i~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---  238 (388)
                                ....+.|+| +++.|+.++.|.                                    .|++||+.+   
T Consensus       162 ~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred             cccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence                      223588999 777777764321                                    477888876   


Q ss_pred             CCc-ceEEEe------cccCCeeEEEEccCCCEEEEeeC----CCcEEEEECCCCc----ee--eEeeeccCCCCCCC--
Q 016522          239 ASR-AVRTFH------GHEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGH----QL--QVYYQQHGENEIPH--  299 (388)
Q Consensus       239 ~~~-~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~~~~~~~~~~~~--  299 (388)
                      +.. ....+.      +|...+..++|+|||+.++....    +..|.+||+.+++    +.  ..+...   .+...  
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~---~~~~~v~  317 (740)
T 4a5s_A          241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM---STTGWVG  317 (740)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE---CSSSCSS
T ss_pred             CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec---cCCceEc
Confidence            421 233333      26677899999999997665533    3479999999887    22  111111   11112  


Q ss_pred             ---eEEEEecCCCCEEE-EEec-CC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccC----CCeE
Q 016522          300 ---VTSIAFSISGRLLF-AGYS-NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSW----DTNL  367 (388)
Q Consensus       300 ---i~~~~~~~~~~~l~-~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~----dg~v  367 (388)
                         .....|+|||+.|+ ..+. +|  .|++||..+++.....     .....|..+.. +|++.| +++..    .+..
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-----~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~  391 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT-----KGTWEVIGIEA-LTSDYLYYISNEYKGMPGGR  391 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC-----CSSSCEEEEEE-ECSSEEEEEESCGGGCTTCB
T ss_pred             cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc-----cCCEEEEEEEE-EeCCEEEEEEecCCCCCcee
Confidence               23678999999776 5553 44  6888898776654332     23445555542 335544 44443    3556


Q ss_pred             EEeccc
Q 016522          368 KVSLHY  373 (388)
Q Consensus       368 ~iw~~~  373 (388)
                      .||...
T Consensus       392 ~ly~v~  397 (740)
T 4a5s_A          392 NLYKIQ  397 (740)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            677654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=4.3e-19  Score=151.02  Aligned_cols=252  Identities=12%  Similarity=0.145  Sum_probs=185.6

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCC------------------------CcEEEEECCCCCeeeEee-eCCccEEEEEECCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQD------------------------GRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG  121 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  121 (388)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++....+. .+-..+..++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3579999999999999888877                        479999998888776554 233568999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---------cccccceEEEEEEeCCCceEEEee-CCCeEEEEecCCC
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---------SGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTG  191 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~  191 (388)
                      +++++...++.|++|+......      ....+         ..+......++++|+++.++++.+ .++.|++|| .++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEG------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSC------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             CEEEEECCCCEEEEEeCCCCeE------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            9888888899999999865310      12222         234456889999994346777775 689999999 566


Q ss_pred             ceEEEeecccc-----cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc----
Q 016522          192 LRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP----  260 (388)
Q Consensus       192 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~----  260 (388)
                      .....+.....     ..+-.....++++|..+.++++...++.|++||..++ +.+..+.  .+...+..++|+|    
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEE
Confidence            66666532110     1223448899999954888888888999999999866 5666663  3556788999999    


Q ss_pred             --CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          261 --DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       261 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                        +++..++...+..|++||..+++.+..+...  ......+..++++|+|.++++...++.|++|++..
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence              3333333344568999999999888776421  22344589999999998888888899999999753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=7.8e-20  Score=157.33  Aligned_cols=273  Identities=12%  Similarity=0.064  Sum_probs=187.7

Q ss_pred             CCCeEEEEe------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC----------CCcEEEEeCCCC
Q 016522           78 ERNRIVSAS------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSP  141 (388)
Q Consensus        78 ~~~~l~t~~------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~  141 (388)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|+|++++++..          ++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            445555443      4789999999999998888776554  8999999999999863          567999998764


Q ss_pred             CCCCCCCceeEEecc------cccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEE-eecccccCCccCeEEE
Q 016522          142 TDKDGNLPVSRMLSG------HKGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSV  212 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~  212 (388)
                      +       ....+..      +......++++|+|. +++++. . ++.|.+||+.+++.+.. +.      . .....+
T Consensus        92 ~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~------~-~~~~~v  156 (361)
T 2oiz_A           92 T-------FEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTA------A-AGCWSV  156 (361)
T ss_dssp             C-------EEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGG------G-TTEEEE
T ss_pred             c-------EEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEec------C-CCccee
Confidence            4       3333322      223456789999985 555554 3 68999999999987776 42      1 122335


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEE------EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-  285 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-  285 (388)
                      .+.|.+...+++.+.||.+.+|+.....+....      +.....+ ..+.++|++..++..+.++.+.++|+...... 
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~  235 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV  235 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee
Confidence            567755578888899999999998653233311      1112222 23344677777887888999999998755422 


Q ss_pred             -eEeeecc-----CCCCCCCeEEEEecCCCCEEEEEec-----------CCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          286 -QVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS-----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       286 -~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                       ..+....     ..........++|+|+++.++++..           .+.|.+||+.+++.+..+    ..+.  +.+
T Consensus       236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i----~~~~--p~~  309 (361)
T 2oiz_A          236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI----PGRD--ALS  309 (361)
T ss_dssp             EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE----ECTT--CCE
T ss_pred             cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE----ecCC--eeE
Confidence             1111000     0000011223689999988877654           347999999999999888    4454  899


Q ss_pred             EEECCCCCeEEEccCCCeEEEecccee
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      ++|+|||++|++++. +.|.+|+....
T Consensus       310 ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            999999999999887 99999986543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.87  E-value=1.8e-19  Score=153.92  Aligned_cols=279  Identities=12%  Similarity=0.049  Sum_probs=191.9

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+++|++++++..++.|.+||..++.     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence            457788999988877777888899999   355666677777778999999999988888889999999987644     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCC----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  223 (388)
                        .......+...+.++++++++ .++++...+    +.|.+||..++.....+..   ......+..++++| ++++++
T Consensus        78 --~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~i~~d~-~g~l~v  150 (333)
T 2dg1_A           78 --IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYF  150 (333)
T ss_dssp             --EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEE
T ss_pred             --EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc---CccCCcccceEECC-CCCEEE
Confidence              233333456789999999987 566666555    6899999988766534321   12345789999998 677776


Q ss_pred             EeeC------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE-eeCCCcEEEEECCC-CceeeEee---ecc
Q 016522          224 SGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT-GHQLQVYY---QQH  292 (388)
Q Consensus       224 ~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~~~~~---~~~  292 (388)
                      +...      .+.|..+|....  ....+..+...+..++|+|+++.|+. .+.++.|.+||+.+ +.....+.   ...
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~  228 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  228 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             EeccccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence            6543      245666665432  23333334456789999999986654 45678999999864 33222111   000


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--CCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                      ... ...+..++++++|+++++...++.|.+||. .++.+..+....  .+|...+.+++|+||+..|+.++.++
T Consensus       229 ~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          229 FTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             cCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            011 124788999999998887777889999998 455555542110  11223689999999987777665553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=2.6e-18  Score=143.37  Aligned_cols=243  Identities=12%  Similarity=0.166  Sum_probs=177.9

Q ss_pred             ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee------CCccEEEEEE-CCCCCEEEEeeC-CCcEEE
Q 016522           64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PCAWVMTCAF-SPTGQSVACGGL-DSVCSI  135 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~v  135 (388)
                      .+|-..+.+++++++++++++...++.|.+||.. ++....+..      +...+..+++ .+++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4566789999999999988888889999999976 666655542      2246889999 577777766643 889999


Q ss_pred             EeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          136 FNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      |+... .       ....+ ..+...+.++++.+++ +++++...++.|.+||.. +.....+..   ..+...+..+++
T Consensus       105 ~d~~g-~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~  171 (286)
T 1q7f_A          105 YNQYG-Q-------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVV  171 (286)
T ss_dssp             ECTTS-C-------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEE
T ss_pred             ECCCC-c-------EEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEE
Confidence            99443 2       22333 2344568899999987 577777788999999964 455554421   134456899999


Q ss_pred             eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCCC-cEEEEECCCCceeeEeeec
Q 016522          215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  291 (388)
                      ++ +++++++...++.|++||...  ..+..+..+  ...+..++++|+|+++++...++ .|.+||. +++.+..+...
T Consensus       172 ~~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          172 ND-KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             CS-SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             CC-CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            98 778888878889999999752  445555433  35688999999999888888776 9999995 45666555442


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .   ....+..++++|+|+++++ +.++.|++|++..
T Consensus       248 ~---~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          248 V---KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             S---CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             C---CCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            2   1224779999999986666 5789999999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=1.4e-18  Score=147.94  Aligned_cols=251  Identities=13%  Similarity=0.092  Sum_probs=183.6

Q ss_pred             CccEEEEEECCCCCEEEEeeCC------------------------CcEEEEeCCCCCCCCCCCceeEEec-ccccceEE
Q 016522          109 CAWVMTCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSC  163 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~  163 (388)
                      -..+.+++++|+|+++++...+                        +.|.+||..++.       ...... .+-.....
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~g   95 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHG   95 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceE
Confidence            3568999999999999888777                        479999987654       333332 34457889


Q ss_pred             EEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccc----cCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECC
Q 016522          164 CQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR  237 (388)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  237 (388)
                      +++.++| +++++...++.|++||..... .+..+.....    ..+......++++|.++.++++.+ .++.|++||..
T Consensus        96 ia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~  174 (329)
T 3fvz_A           96 LSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS  174 (329)
T ss_dssp             EEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred             EEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence            9999987 578888889999999986542 3444421110    133446889999986778888876 68999999943


Q ss_pred             CCCcceEEEec----------ccCCeeEEEEccC-CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          238 VASRAVRTFHG----------HEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       238 ~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                       + ..+..+..          +-.....++++|+ +.++++...++.|++||..+++.+..+...   .....+..++|+
T Consensus       175 -g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~  249 (329)
T 3fvz_A          175 -G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYI  249 (329)
T ss_dssp             -S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEE
T ss_pred             -C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeec
Confidence             3 45555532          2234889999998 777777778899999999888877766432   223457889999


Q ss_pred             CCCCEEEE-------EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          307 ISGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       307 ~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      | +..+++       ...+..|++||..+++.+..+... ..+...+..++++|+|.++++...++.|++|....
T Consensus       250 p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          250 P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            9 333333       334458999999999988876321 35667799999999998888888999999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=3e-18  Score=142.98  Aligned_cols=241  Identities=15%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeCCCceEEEeeC-CCe
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSSG-DQT  182 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~-dg~  182 (388)
                      ..+.+++++++++++++...++.|.+|+....        ....+.      ++...+..+++.+.++.++++... ++.
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            45889999999998888888999999997642        222222      244567889995333355555533 889


Q ss_pred             EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc
Q 016522          183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP  260 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~  260 (388)
                      |.+|| .+++....+.    ..+...+..++++| +++++++...++.|.+||.. + ..+..+.  .+...+..++++|
T Consensus       102 i~~~d-~~g~~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~p~~i~~~~  173 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-G-NVLHKFGCSKHLEFPNGVVVND  173 (286)
T ss_dssp             EEEEC-TTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-S-CEEEEEECTTTCSSEEEEEECS
T ss_pred             EEEEC-CCCcEEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-C-CEEEEeCCCCccCCcEEEEECC
Confidence            99999 5666665552    23445789999998 77788887788999999965 2 4444443  3445689999999


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCC
Q 016522          261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQ  339 (388)
Q Consensus       261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  339 (388)
                      +++++++...++.|.+||.. ++.+..+..   ......+..++++++|+++++...++ .|.+||. +++.+..+..  
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~--  246 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES--  246 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--
T ss_pred             CCCEEEEECCCCEEEEEcCC-CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc--
Confidence            99988888889999999974 454444432   11223578999999999888887775 9999995 4555555521  


Q ss_pred             CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ......+.+++++|+|+++++ +.|+.|++|.+..
T Consensus       247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            122235789999999987777 6799999997643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.85  E-value=1.5e-18  Score=148.97  Aligned_cols=257  Identities=10%  Similarity=0.061  Sum_probs=173.3

Q ss_pred             CeeEEEeCCCCCeEEEEe---------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---C--cEE
Q 016522           69 KVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S--VCS  134 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~  134 (388)
                      .+...++  ||++++...         .++.|.+||+.+++... +    ..+..++|+|+|+.|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4667777  888877542         25689999998876533 3    457889999999999887654   3  377


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC---------------------------CCeEEEEe
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------------------------DQTCVLWD  187 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~v~i~d  187 (388)
                      +|++.++.       ... +..+.. +..+.|+|+|.. |+.++.                           ...|.+||
T Consensus        89 ~~~~~~g~-------~~~-l~~~~~-~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           89 VADLETLS-------SKK-ILEAKN-IRSLEWNEDSRK-LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             EEETTTTE-------EEE-EEEESE-EEEEEECTTSSE-EEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             EEECCCCc-------eEE-EEcCCC-ccceeECCCCCE-EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence            77877643       222 222334 899999999854 554442                           25799999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-------ceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      +.+++....+     .. . .+..+.|+| ++ +++++..++       ...+|.++ . .....+..+ ..+..+  +|
T Consensus       159 ~~~~~~~~~l-----~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~-~~~~~~--sp  224 (347)
T 2gop_A          159 TESEEVIEEF-----EK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE-D-GKEEKMFEK-VSFYAV--DS  224 (347)
T ss_dssp             TTTTEEEEEE-----EE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE-T-TEEEEEEEE-ESEEEE--EE
T ss_pred             CCCCeEEeee-----cC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC-C-CceEEeccC-cceeeE--CC
Confidence            9988763444     22 3 788999999 66 777775542       34555544 3 334444444 445444  99


Q ss_pred             CCCEEEEeeCC--------CcEEEEECCCCceeeEeeeccCCCCCCCeEE-EEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          261 DGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       261 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      +|++|+.++.+        ..|.+||  +++... +..    .+...+.. +.|+ ++ ++++++.++.+++| +.+++.
T Consensus       225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~----~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-ILD----EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-SST----TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             CCCEEEEEEccccCCccccceEEEEC--CCceEe-ccc----cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            99998877754        3688888  444322 211    12234675 8999 88 88999999999999 876655


Q ss_pred             EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE-EEeccc
Q 016522          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KVSLHY  373 (388)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v-~iw~~~  373 (388)
                      ...+     .+...|.+++|+|  .++++++.++.. .||...
T Consensus       295 ~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          295 KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            4333     3467899999999  677777777765 777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=8.1e-17  Score=135.12  Aligned_cols=282  Identities=7%  Similarity=-0.033  Sum_probs=195.4

Q ss_pred             ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      .+..+...+.++++.++|+++++...++.|.+||.. ++.. .+.  .....+.+++++++|.++++...++.|..|+..
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            344566789999999999887777668899999987 5433 332  245679999999999988887778889999875


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      . .     . ...........+..+++.+++ .++++...++.|..||. ++.......    ......+..+++.+ ++
T Consensus        87 g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~----~~~~~~~~~i~~~~-~g  152 (299)
T 2z2n_A           87 G-I-----I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYEL----PNKGSYPSFITLGS-DN  152 (299)
T ss_dssp             S-C-----E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECT-TS
T ss_pred             C-c-----E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecC----CCCCCCCceEEEcC-CC
Confidence            2 1     1 111122244578889999876 56666667889999998 554433221    23445788999998 67


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                      .++++...++.|..||. ++ ..... .......+.+++++++++++++...++.|.+||. ++.... +..   .....
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~  225 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---PTPNA  225 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTC
T ss_pred             CEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---CCCCC
Confidence            77777777789999998 44 32222 2333456889999999997777767889999998 665332 221   12234


Q ss_pred             CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      .+..++++++|++.++...++.|..||. +++.. .+..  ..+...+.++++ ++|.+.++.. .+.+..+.+
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence            5889999999986666657789999998 44432 2211  344567899999 8888777655 455555543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=8.9e-19  Score=165.40  Aligned_cols=306  Identities=12%  Similarity=0.029  Sum_probs=189.4

Q ss_pred             CCCCcccCCCCceeeeccccccCC-----eeEEEeCCCCCeEEEEeCC---------CcEEEEECCCCCeeeEeeeCCcc
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKLPCAW  111 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~  111 (388)
                      +.....|++.+.++...+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++.. .+..+...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~  113 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN  113 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence            566778888888888788887743     2447889999999998876         56679999988754 35556678


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC--ceeEEecccc---------cceEEEEEEeCCCceEEEeeCC
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSGHK---------GYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      +...+|||||+.|+.+. ++.|++|++.++.......  .....+.++.         +....+.|+|||. .|+.++.|
T Consensus       114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d  191 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFN  191 (740)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEE
T ss_pred             ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEc
Confidence            99999999999999884 6899999998754210000  0000111221         1123489999984 55554321


Q ss_pred             ------------------------------------CeEEEEecCC---C---ceEEEeecccccCCccCeEEEEeeCCC
Q 016522          181 ------------------------------------QTCVLWDITT---G---LRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       181 ------------------------------------g~v~i~d~~~---~---~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                                                          ..|.+||+.+   +   +............+...+..++|+| +
T Consensus       192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-d  270 (740)
T 4a5s_A          192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-Q  270 (740)
T ss_dssp             CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-T
T ss_pred             ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-C
Confidence                                                1578899888   6   3322211000013677899999999 6


Q ss_pred             CcEEEEeeC----CCceEEEECCCCC-----cceEEE--ecccCCee-----EEEEccCCCEEE-Eee-CC--CcEEEEE
Q 016522          219 SRMFVSGSC----DSTARLWDTRVAS-----RAVRTF--HGHEGDVN-----TVKFFPDGNRFG-TGS-DD--GTCRLFD  278 (388)
Q Consensus       219 ~~~l~~~~~----dg~i~i~d~~~~~-----~~~~~~--~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g~i~i~d  278 (388)
                      +++++....    +..|.+||+.++.     .....+  ..|...+.     ...|+|||+.|+ ..+ .+  ..|.+||
T Consensus       271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence            776555432    3379999998763     012222  44555554     789999999877 555 33  3588889


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-Eec----CC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYS----NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~----dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (388)
                      +.++........      ...+..+.. ++++.|+. ++.    .+  .|+..++..+.....+...............|
T Consensus       351 ~~~~~~~~lT~g------~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~  423 (740)
T 4a5s_A          351 IDKKDCTFITKG------TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF  423 (740)
T ss_dssp             TTCSSCEESCCS------SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred             CCCCceEecccC------CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence            886654432211      112444432 44665544 433    23  34445555444432342110123456889999


Q ss_pred             CCCCCeEEEcc
Q 016522          352 SADGSALCTGS  362 (388)
Q Consensus       352 ~~~~~~l~s~~  362 (388)
                      +|++++++...
T Consensus       424 S~dg~~~~~~~  434 (740)
T 4a5s_A          424 SKEAKYYQLRC  434 (740)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99999776544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.84  E-value=6.3e-17  Score=146.13  Aligned_cols=305  Identities=13%  Similarity=0.097  Sum_probs=210.9

Q ss_pred             CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEEC----CC
Q 016522           47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFS----PT  120 (388)
Q Consensus        47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~  120 (388)
                      .....+++.+.+.+.++... ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|+    |+
T Consensus       177 ~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pD  254 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWE  254 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCT
T ss_pred             CeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCC
Confidence            34445777777777777643 357799999999999999999999999996  788888777644 47899999    69


Q ss_pred             CCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc----------cc-cceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          121 GQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       121 ~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      |++++++.. ++.+.++|..+.+       ....+..          |. ..+..+..++++..+++....+|.|.++|.
T Consensus       255 Gk~l~v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~  327 (567)
T 1qks_A          255 DKYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  327 (567)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence            999888765 5899999987644       3333321          11 257778888887777777788899999998


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEec-----ccCCeeEEE-EccC
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK-FFPD  261 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~-~~~~  261 (388)
                      .+........    .........+.|+| +++++ ++...++.|.++|+.+. +.+..+..     |.+  ..+. ++|+
T Consensus       328 ~~~~~~~v~~----i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg--~g~~~~~p~  399 (567)
T 1qks_A          328 TDLNNLKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPG--RGANFVHPT  399 (567)
T ss_dssp             TCSSEEEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCT--TCEEEEETT
T ss_pred             CCCccceeee----eeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCc--cceeeECCC
Confidence            8764333221    12334567889999 55555 55556889999999987 55544432     322  1233 5787


Q ss_pred             CCEE-EEee-CCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-------CCcEEEEE
Q 016522          262 GNRF-GTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-------NGDCYVWD  325 (388)
Q Consensus       262 ~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d  325 (388)
                      +..+ +++. .++.|.++|..+       .+.+..+.....     .-..+..+|+++++.+...       .++|.++|
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            5444 4443 468999999987       556666544211     1245678999999988763       35999999


Q ss_pred             cccc-----eE-Eeecc-----CCCCCcCCCeeEEEECCCCCeEEEcc-----CCCeEEEeccce
Q 016522          326 TLLA-----KV-VLNLG-----SLQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVSLHYY  374 (388)
Q Consensus       326 ~~~~-----~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~  374 (388)
                      +.+.     .. ...+.     .+ ......+..+.|+++|+.+..+.     .++.|.|++...
T Consensus       475 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          475 IKAMTGDGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCcccccccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence            9877     21 11111     01 11245789999999999887763     379999988654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1e-18  Score=163.33  Aligned_cols=301  Identities=12%  Similarity=0.059  Sum_probs=179.5

Q ss_pred             CcccCCCCceeeeccccccCCee---------EEEeC--CCCCe-EEEEeC-CCcEEEEECC--CCCeeeEeee-----C
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVY---------SLDWT--SERNR-IVSASQ-DGRLIVWNAL--TSQKTHAIKL-----P  108 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~---------~~~~~--~~~~~-l~t~~~-dg~v~iwd~~--~~~~~~~~~~-----~  108 (388)
                      ...|........+.+..|...+.         ...|+  |||+. |+.++. +..|.++++.  .......+..     +
T Consensus        49 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~  128 (662)
T 3azo_A           49 ATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGG  128 (662)
T ss_dssp             EEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTT
T ss_pred             EEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCC
Confidence            34444222334556677776666         66665  99998 776554 5567777765  2033444444     5


Q ss_pred             CccEEEEEECCCCCEEEEeeCC----------CcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEe
Q 016522          109 CAWVMTCAFSPTGQSVACGGLD----------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITS  177 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~  177 (388)
                      ...+..++|+|||+.|++++.+          ..|++|++.+....  .......+. .+...+..++|+|+| +.|+.+
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~  205 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWL  205 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--CGGGSEESSCSCSSEECCCEECTTS-SEEEEE
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--cCCceeEEEecCCCcccCceECCCC-CEEEEE
Confidence            6678999999999999998876          58999999862000  000123344 555678889999998 456655


Q ss_pred             eCC--------CeEEEEecC-CC---ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcce
Q 016522          178 SGD--------QTCVLWDIT-TG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAV  243 (388)
Q Consensus       178 ~~d--------g~v~i~d~~-~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~  243 (388)
                      +.+        ..|.+||+. ++   ......     ..+...+..+.|+| ++++++++..++  .|.+||+..+ . .
T Consensus       206 ~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~  277 (662)
T 3azo_A          206 AWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-A  277 (662)
T ss_dssp             EECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-E
T ss_pred             ECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-e
Confidence            533        479999998 56   333332     34567899999999 666888888888  4555555433 2 2


Q ss_pred             EEEecccCC---------eeEEEEccCCCEEEEeeCCCcEEEE--ECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--
Q 016522          244 RTFHGHEGD---------VNTVKFFPDGNRFGTGSDDGTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--  310 (388)
Q Consensus       244 ~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--  310 (388)
                      ..+..+...         +..++|+|+++++++++. +.+++|  |+.+++ ...+...     ...+..+ +++++.  
T Consensus       278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-----~~~~~~~-~s~~~~~~  349 (662)
T 3azo_A          278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-----WTEWAAT-LTVSGTRA  349 (662)
T ss_dssp             EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-----CCEEEEE-EEEETTEE
T ss_pred             eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-----CCeEEEE-EecCCCEE
Confidence            333222221         467899999999999988 999999  555444 3333221     2235555 144444  


Q ss_pred             EEEEEecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          311 LLFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       311 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ++++++.+.  .|+++|+.+++.....    ..+...+....+.+...+.+.+..+..|..|.+
T Consensus       350 ~~~~~~~~~~~~i~~~d~~~g~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          350 VGVAASPRTAYEVVELDTVTGRARTIG----ARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEEETTEEEEEEEEETTTCCEEEEE----SCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEcCCCCCCEEEEEECCCCceEEee----cCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            333444443  5666777676654332    223223333333333333344333445655543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.82  E-value=1.5e-16  Score=143.63  Aligned_cols=283  Identities=11%  Similarity=-0.001  Sum_probs=200.0

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC--CCCCCCCCCceeEEe
Q 016522           77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN--SPTDKDGNLPVSRML  154 (388)
Q Consensus        77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~  154 (388)
                      |.+.++++...+++|.++|..+++.+..+.... .+..+.|+|+|+++++++.++.|.+||+.  +.+       ....+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-------~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-------TVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-------EEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-------EeEEE
Confidence            444567778889999999999999998887654 46799999999999999999999999995  322       34444


Q ss_pred             cccccceEEEEEE----eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC-----C-ccCeEEEEeeCCCCcEEEE
Q 016522          155 SGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-----H-TADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       155 ~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~-~~~i~~~~~~~~~~~~l~~  224 (388)
                      .... ....++|+    |+|...+++...++.|.++|..+.+.+..+.......     | ...+..+..++.+..+++.
T Consensus       237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            4433 35689999    6886666666777999999999998888774321000     1 2267788888866677777


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeee-ccCCCCCCCeEE
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTS  302 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~  302 (388)
                      ...+|.|.++|....................+.|+|++++++++. .++.|.++|+.+++....+.. .. ..+...-..
T Consensus       316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-~Phpg~g~~  394 (567)
T 1qks_A          316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-TPHPGRGAN  394 (567)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-SBCCTTCEE
T ss_pred             ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-CCCCcccee
Confidence            777899999998765322222222344567889999999987765 578999999999987776644 22 222211112


Q ss_pred             EEecCCCCEE-EEEe-cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-------CCe
Q 016522          303 IAFSISGRLL-FAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTN  366 (388)
Q Consensus       303 ~~~~~~~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~  366 (388)
                      + ++|++..+ +++. .++.|.++|..+       .+.+..+.    .....-..+..+|++++|.+...       .+.
T Consensus       395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~  469 (567)
T 1qks_A          395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  469 (567)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCCEEEEeCCCCCeEEEecCCCCCcccCce
Confidence            2 67875544 4443 468999999987       66777763    22233345778999999988653       458


Q ss_pred             EEEeccce
Q 016522          367 LKVSLHYY  374 (388)
Q Consensus       367 v~iw~~~~  374 (388)
                      |.|++...
T Consensus       470 v~v~d~~~  477 (567)
T 1qks_A          470 VAVFDIKA  477 (567)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEECCc
Confidence            99998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=3.1e-18  Score=149.42  Aligned_cols=261  Identities=10%  Similarity=0.095  Sum_probs=171.5

Q ss_pred             CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE--ECCCCCEEEE
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--FSPTGQSVAC  126 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~  126 (388)
                      .-.+++...+......+|...+..++|+|||+.|+.++.++.|++||+.+++.......+...+....  ++|++++++.
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence            33456666777777777777777889999999999999999999999999988777777776665444  4899998874


Q ss_pred             e----------------------eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeC----
Q 016522          127 G----------------------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSG----  179 (388)
Q Consensus       127 ~----------------------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~----  179 (388)
                      .                      ..+..|.+||+.++.        ...+..+...+..+.|+| +| ..++....    
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~  212 (388)
T 3pe7_A          142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHD  212 (388)
T ss_dssp             EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTT
T ss_pred             ccccCcccccccccchhhhhhccCCcceEEEEECCCCc--------eEEeecCCccccccEECCCCC-CEEEEEEecCCC
Confidence            3                      244679999988754        233445666789999999 87 45555443    


Q ss_pred             --CCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeCCCCcEE-EEeeCCC----ceEEEECCCCCc-ceEEEecc
Q 016522          180 --DQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISGSNSRMF-VSGSCDS----TARLWDTRVASR-AVRTFHGH  249 (388)
Q Consensus       180 --dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l-~~~~~dg----~i~i~d~~~~~~-~~~~~~~~  249 (388)
                        ...|.++|...+......      .+.  ..+..+.|+| +++.| +++..++    .|++||+.++.. .+..+.++
T Consensus       213 ~~~~~l~~~d~~~~~~~~l~------~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~  285 (388)
T 3pe7_A          213 LVDARMWLINEDGTNMRKVK------THAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC  285 (388)
T ss_dssp             TSSCSEEEEETTSCCCEESC------CCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred             CCcceEEEEeCCCCceEEee------eCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence              337888888765543322      222  3577889999 55544 4443332    399999987632 22222221


Q ss_pred             cC---CeeEEEEccCCCEEEEe---------eCCCcEEEEECCCCceeeEeeeccCC------CCCCCeEEEEecCCCCE
Q 016522          250 EG---DVNTVKFFPDGNRFGTG---------SDDGTCRLFDIRTGHQLQVYYQQHGE------NEIPHVTSIAFSISGRL  311 (388)
Q Consensus       250 ~~---~i~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~  311 (388)
                      ..   ....+.|+|||+.|+..         ..+..|.+||+.+++..... .....      .....+..++|+|||+.
T Consensus       286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~  364 (388)
T 3pe7_A          286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQ  364 (388)
T ss_dssp             EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-ECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-cccCcccccccccccCCCCccCCCCCCE
Confidence            10   12224799999988754         45668999999887654332 22110      00113677899999998


Q ss_pred             EEEEec-CCcEEEEEc
Q 016522          312 LFAGYS-NGDCYVWDT  326 (388)
Q Consensus       312 l~~~~~-dg~i~i~d~  326 (388)
                      |+..+. +|...+|.+
T Consensus       365 l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          365 ILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEEECTTSSCEEEEE
T ss_pred             EEEEecCCCceeEEEE
Confidence            776654 666666643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.82  E-value=2.1e-17  Score=138.57  Aligned_cols=241  Identities=9%  Similarity=0.043  Sum_probs=170.0

Q ss_pred             CCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEe
Q 016522           99 SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS  177 (388)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (388)
                      +..+..+........+++|+|+++ +++++..++.|..|+..++         ...+..+...+.+++++++| .++++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~   86 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACS   86 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEe
Confidence            344455555666788999999998 7788888999999998762         23444566778999999987 566666


Q ss_pred             eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE----eeC-------------CCceEEEECCCCC
Q 016522          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVAS  240 (388)
Q Consensus       178 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~  240 (388)
                      ..++.|.+||..+++........ .......+..++++| +++++++    |+.             .+.|..++..   
T Consensus        87 ~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---  161 (296)
T 3e5z_A           87 HGLRRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---  161 (296)
T ss_dssp             TTTTEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---
T ss_pred             cCCCeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---
Confidence            66789999999888755443110 011223567899998 7788876    331             2355555544   


Q ss_pred             cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-CCce---eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .....+..+......++|+|+++.+++.+.++.|.+|++. ++..   ...+ ..    ....+..++++++|+++++. 
T Consensus       162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~----~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV----EPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC----SSSCCCSEEEBTTSCEEEEE-
T ss_pred             CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC----CCCCCCeEEECCCCCEEEEc-
Confidence            2344455566678899999999998777788999999987 4443   2222 11    22346789999999866655 


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE-CCCCCeEEEccCCCeE
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNL  367 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~v  367 (388)
                       ++.|.+||.. ++.+..+    ..+.. +++++| .|+++.|++++.++..
T Consensus       236 -~~~v~~~~~~-g~~~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~  280 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFW  280 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred             -CCeEEEECCC-CCEEEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence             7899999986 6666666    44555 899999 6899989988877533

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.7e-16  Score=135.38  Aligned_cols=246  Identities=10%  Similarity=0.057  Sum_probs=170.6

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----Cc
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SV  132 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~  132 (388)
                      ......+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++++|+++++...+    +.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence            34555677777788999999999988888889999999998887665444556779999999999988877666    68


Q ss_pred             EEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccC
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      |.+||..+..       ....+.  .+...+.++++.|++ .++++...      .+.|..+|..+++.....      .
T Consensus       114 i~~~d~~~~~-------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~  179 (333)
T 2dg1_A          114 IFAATENGDN-------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------Q  179 (333)
T ss_dssp             EEEECTTSCS-------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------E
T ss_pred             EEEEeCCCCE-------EEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEee------c
Confidence            9999987643       111121  234578899999987 55555443      356777777655443332      2


Q ss_pred             CccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcceEEE--------ecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          205 HTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTF--------HGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                      ....+..++|+| +++ ++++.+.++.|.+||+.........+        .++ ..+..++++++|+++++...++.|.
T Consensus       180 ~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~  257 (333)
T 2dg1_A          180 NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVL  257 (333)
T ss_dssp             EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEE
Confidence            234578899999 655 55565667899999986422222211        111 3578899999999888887888999


Q ss_pred             EEECCCCceeeEeeeccC-CCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          276 LFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      +||. +++....+..... ..+...+.+++|+|+++.|++++.++
T Consensus       258 ~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          258 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            9998 4555555533211 01112478999999988777766654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.80  E-value=2.6e-16  Score=133.61  Aligned_cols=265  Identities=9%  Similarity=0.000  Sum_probs=184.1

Q ss_pred             CCCcEEEEECCCCCeeeEeee------CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522           87 QDGRLIVWNALTSQKTHAIKL------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (388)
Q Consensus        87 ~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      .+++|.++|..+++....+..      .......+.+. +++.+++...++.|.+||..+.+       ....+. ....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSS
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCC
Confidence            378999999998886654421      11335677774 45566666668999999998755       444443 3456


Q ss_pred             eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC
Q 016522          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA  239 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  239 (388)
                      ...+++++++ .++++...++.|.+||..+++....+..............+++.  ++.++++.. .++.|.++|+.+.
T Consensus        86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCC
Confidence            7889999986 55555548899999999999887766321101111245566662  566666654 4889999999877


Q ss_pred             CcceEEEecccCCeeEEEEccCCCEEEEeeCC----------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                       +....+.. ......+.++|+|++++++..+          +.|.++|..+++....+....+    .....++|+|++
T Consensus       163 -~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~  236 (328)
T 3dsm_A          163 -KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTR  236 (328)
T ss_dssp             -EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTS
T ss_pred             -eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCC
Confidence             55555553 3345789999999977777655          7899999998887766543211    247899999999


Q ss_pred             CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEc----cCCCeEEEeccc
Q 016522          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTG----SWDTNLKVSLHY  373 (388)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~----~~dg~v~iw~~~  373 (388)
                      +.|+++..  .|.+||..+++..... .. ......+..++++| ++.+.++.    ..++.|.+|+..
T Consensus       237 ~~lyv~~~--~v~~~d~~t~~~~~~~-~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVEADRVPVRP-FL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEESS--SEEEEETTCSSCCSSC-SB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CEEEEEcc--EEEEEECCCCceeeee-ee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            98888755  8999999887753211 00 12246789999999 55555655    578999999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=4.3e-17  Score=153.29  Aligned_cols=250  Identities=8%  Similarity=0.035  Sum_probs=168.3

Q ss_pred             cccCCeeEEEeCCCCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc-------
Q 016522           65 GHAGKVYSLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------  132 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  132 (388)
                      +|...+..++|||||++||.++.++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3545789999999999998776543     8999999998876533222 23667999999999999888765       


Q ss_pred             ---------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----CCeEEEEecCC------Cc
Q 016522          133 ---------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITT------GL  192 (388)
Q Consensus       133 ---------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~------~~  192 (388)
                               |++|++.++...   .........|...+..+.|+|+|.. |+.++.     +..|.+||+.+      +.
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRY-VLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCE-EEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCE-EEEEEEccCCCccEEEEEECcccccccCCc
Confidence                     999999874411   0111122234556788999999854 544432     56899999986      42


Q ss_pred             -eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCc-ceEEEecccC--CeeEEEEccCCCEE
Q 016522          193 -RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEG--DVNTVKFFPDGNRF  265 (388)
Q Consensus       193 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l  265 (388)
                       ....+     ..+...+.. .|+|+++.+++.+..+   +.|.+||+..+.. ....+..|..  .+..++|++++.++
T Consensus       277 ~~~~~l-----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          277 LKWVKL-----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             CCCEEE-----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cceEEe-----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence             23333     234444444 4677344444444333   3699999886632 2355555544  67889999877888


Q ss_pred             EEeeCCCc--EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccce
Q 016522          266 GTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAK  330 (388)
Q Consensus       266 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~  330 (388)
                      ++...|+.  |.+|++.+++....+...     ...+..+.++|+++.++...    ..+.++.||+.+++
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88888884  666787677765555332     23478899999998666442    24689999998766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.80  E-value=3.3e-15  Score=125.31  Aligned_cols=290  Identities=8%  Similarity=-0.020  Sum_probs=195.1

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-EeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      |.+...... .+......+.++++.++|+.+++...++.|.+||.. ++... .+......+..+++.+++.++++...+
T Consensus         5 w~~~~~~~~-~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A            5 WMNFYLEEF-NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             GGSEEEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             ceeeeEEEE-ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC
Confidence            444333332 233455688999999999988877778999999987 54433 122233568999999999988877778


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      +.|..||.. +.     . ...........+.++++.+++ .++++...++.|..+|.. ++......    ......+.
T Consensus        83 ~~v~~~d~~-g~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~  149 (300)
T 2qc5_A           83 NKIGKLSKK-GG-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDL----PNKGSYPA  149 (300)
T ss_dssp             TEEEEECTT-SC-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEEC----SSTTCCEE
T ss_pred             CeEEEECCC-CC-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccC----CCCCCCce
Confidence            889999876 32     1 111222234668899999876 566666667899999987 55442211    22445788


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      .+++.+ +++++++...++.|..||. .+ .... ....+...+..+++++++++.++....+.|.+||. ++...... 
T Consensus       150 ~i~~d~-~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-  224 (300)
T 2qc5_A          150 FITLGS-DNALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-  224 (300)
T ss_dssp             EEEECT-TSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred             eEEECC-CCCEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-
Confidence            999998 6777776666788999998 33 2222 12233456889999999987777667778999998 44433321 


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEE
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~  368 (388)
                      .   ......+.+++++++|++.++...++.|..||.. ++.. ..+    ......+.+++++++|.+.++.. . .|.
T Consensus       225 ~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~-~-~i~  294 (300)
T 2qc5_A          225 I---PTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQL----QTENAEPHGITFGKDGSVWFALK-C-KIG  294 (300)
T ss_dssp             C---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC----CSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred             C---CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEEC----CccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence            1   1123357899999999866666567899999984 4433 222    23345688999999998666655 4 555


Q ss_pred             Eec
Q 016522          369 VSL  371 (388)
Q Consensus       369 iw~  371 (388)
                      .++
T Consensus       295 ~~~  297 (300)
T 2qc5_A          295 KLN  297 (300)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.80  E-value=1.6e-16  Score=134.80  Aligned_cols=281  Identities=16%  Similarity=0.181  Sum_probs=194.8

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCC-------c
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------A  110 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~  110 (388)
                      ....+++.+.+.+.++..-..+ . ++++|||+++++++          .++.|.+||..+++.+..+....       .
T Consensus        60 ~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~  137 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT  137 (386)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             EEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence            4556778888888888765555 4 99999999887765          36789999999999998887643       2


Q ss_pred             cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ....++|+|||++++++..  ++.|.++|+.+.+       ....+....    |....|.+...+++.+.||.+.+.++
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECCC----cceeecCCCceeEEECCCCCEEEEEC
Confidence            4567899999999998864  6899999999855       444443211    12234555667888899999999999


Q ss_pred             CC-CceEEEeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEe----------cccCCeeE
Q 016522          189 TT-GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH----------GHEGDVNT  255 (388)
Q Consensus       189 ~~-~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~----------~~~~~i~~  255 (388)
                      .+ ++........+ ......+. ...|.+.++++++ .+.+|.|++.|+..... ....+.          -.......
T Consensus       207 ~~~g~v~~~~~~~~-~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          207 GTEGTPEITHTEVF-HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             CSSSCCEEEECCCC-SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             CCCCeEEEeeccee-ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            76 55433221111 11112221 2355544666555 45589999999875421 222221          01234456


Q ss_pred             EEEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEec-CCcEEE
Q 016522          256 VKFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYS-NGDCYV  323 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~-dg~i~i  323 (388)
                      ++++|+++.++....          .+.|.++|+.+++.+..+....      .+..+++++|++ +|+++.. ++.|.+
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEE
Confidence            888999998888653          2579999999999998886643      378999999997 6776544 889999


Q ss_pred             EEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      +|..+++.+.++..     .+..+.|.+++|
T Consensus       359 iD~~t~k~~~~i~~-----~~~p~~l~~s~d  384 (386)
T 3sjl_D          359 HDAESGEELRSVNQ-----LGHGPQVITTAD  384 (386)
T ss_dssp             EETTTCCEEEEECC-----CCSSCCEEEECC
T ss_pred             EECCCCcEEEEecC-----CCCCceeEECCc
Confidence            99999999988842     233455666665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=3.5e-16  Score=128.96  Aligned_cols=255  Identities=13%  Similarity=0.095  Sum_probs=184.6

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (388)
                      .++.|++++.|+.|.+||.++++.+..+..+. ..+.+++++|+|++++  +.++.|..||. +++       ....+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------ELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------EEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------EEEEEcC
Confidence            45789999999999999999999999998776 4688999999999888  34678999998 443       4455554


Q ss_pred             c-ccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccc-cCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          157 H-KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       157 ~-~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      + ...+.++.+.++| +++++.+. ++.|..+|. +++.+..+..... ..+......+++.+ +++++++...++.|..
T Consensus        74 ~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           74 PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE  150 (276)
T ss_dssp             CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred             CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence            3 3467888999987 56777666 788888886 6777666642211 11223444556777 8889999999999999


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecCCCCEE
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l  312 (388)
                      ||.. + +.+..+... ..+.++...++++++++++.++.|..+|..+++.+..+...... .....+..++..++|.++
T Consensus       151 ~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          151 IAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             ECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             ECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            9987 5 666666653 45667888899999999988889999999999998888643211 122347888899999988


Q ss_pred             EEEecC--------CcEEEEEc-ccceEEeeccCCCCCcCCCeeEEE
Q 016522          313 FAGYSN--------GDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       313 ~~~~~d--------g~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      ++.+..        +..+++.+ .+++.+.++..  ...-+.+..++
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~--~~~~~~~~~~~  272 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND--KVKFGMISTIC  272 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC--TTTSCCCCEEE
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecC--cccccceeeee
Confidence            776421        23455655 47777777743  22334555543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=2.5e-16  Score=132.01  Aligned_cols=242  Identities=12%  Similarity=0.121  Sum_probs=171.4

Q ss_pred             eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      ..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            44445667788999999998 7788888999999998877  56666777789999999999988877777899999986


Q ss_pred             CCCCCCCCCceeEEec---c-cccceEEEEEEeCCCceEEE----ee-------------CCCeEEEEecCCCceEEEee
Q 016522          140 SPTDKDGNLPVSRMLS---G-HKGYVSCCQYVPDEDTHLIT----SS-------------GDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~v~i~d~~~~~~~~~~~  198 (388)
                      ++.       ......   . ....+..+++.|+| .++++    |+             ..+.|..++.. +... .+ 
T Consensus        99 ~g~-------~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~-  167 (296)
T 3e5z_A           99 GGE-------WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-AP-  167 (296)
T ss_dssp             TCC-------EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EE-
T ss_pred             CCc-------EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Ee-
Confidence            643       111111   1 12346679999987 56665    33             13467667665 4433 33 


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  275 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  275 (388)
                          ..+......++|+| +++.+++.+.++.|.+||+......   ...+..+...+.+++++++|+++++.  ++.|.
T Consensus       168 ----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          168 ----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence                24556678999999 6666677788899999998732232   22333345567789999999876666  78899


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEe-cCCCCEEEEEecCCcEEEEEcccce
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      +||.. ++.+..+....     . +++++| .|+++.|++++.+ .+.-++..+.+
T Consensus       241 ~~~~~-g~~~~~~~~~~-----~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          241 VLTPD-GDELGRVLTPQ-----T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EECTT-SCEEEEEECSS-----C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             EECCC-CCEEEEEECCC-----C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            99986 66665554321     2 688899 6899999888765 45566665544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=5.2e-17  Score=134.26  Aligned_cols=241  Identities=10%  Similarity=-0.007  Sum_probs=166.6

Q ss_pred             CeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ...+++++++|++++ +.+.++.|.+||..+.............+.+++++++|+++++.. ++.|.+|+.....     
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-----   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-----   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence            678999999998777 546788999999765543322223334678899999999666655 8899999987633     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                        ...........+..+++.+++ .++++...++.|.+|+..+.......     ......+..+++++ +++++++...
T Consensus        99 --~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~  169 (270)
T 1rwi_B           99 --QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDTD  169 (270)
T ss_dssp             --CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECT-TCCEEEEEGG
T ss_pred             --EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeC-CCCEEEEECC
Confidence              111111223567899999986 56777677889999986655433221     23334678899998 6677777777


Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      ++.|.+||.... ........+...+.+++++++|.++++...++.|.+|+........ ...    .....+..+++++
T Consensus       170 ~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----~~~~~p~~i~~~~  243 (270)
T 1rwi_B          170 NNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----TGLNTPLAVAVDS  243 (270)
T ss_dssp             GTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----CSCSCEEEEEECT
T ss_pred             CCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----CCCCCceeEEECC
Confidence            889999998755 2222222233568899999999877777778899999986543322 111    1123589999999


Q ss_pred             CCCEEEEEecCCcEEEEEcccce
Q 016522          308 SGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                      +|+++++...++.|+++++...+
T Consensus       244 ~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          244 DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCEEEEEcCCCcc
Confidence            99988888889999999976543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=1.9e-16  Score=148.97  Aligned_cols=243  Identities=11%  Similarity=-0.004  Sum_probs=166.7

Q ss_pred             ccEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--
Q 016522          110 AWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--  182 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--  182 (388)
                      ..+..++|||||++|+.+..++     .|++||+.++.       ...... ....+..++|+|+|. .|+.++.++.  
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~-~~~~~~~~~wspDg~-~l~~~~~~~~~~  195 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDGK-GMFYNAYPQQDG  195 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTSS-EEEEEECCCCSS
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccc-cCcccceEEEEeCCC-EEEEEEECCccc
Confidence            3588999999999998876543     89999998855       222111 122366799999984 5666666554  


Q ss_pred             --------------EEEEecCCCce--EEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----CCceEEEECCC---
Q 016522          183 --------------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV---  238 (388)
Q Consensus       183 --------------v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~---  238 (388)
                                    |++|++.++..  ...+..   ..+...+..+.|+| ++++|+.++.     +..|.+||+..   
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccc
Confidence                          99999988763  222210   23455678999999 6677666554     56899999976   


Q ss_pred             ---CCcceEEEecccCCeeEEEEccCCCEEEEeeCC----CcEEEEECCCCce--eeEeeeccCCCCCCCeEEEEecCCC
Q 016522          239 ---ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       239 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                         +......+..+...+.. .|+|+|+.|+..+.+    +.|.+||+.++..  ...+....   ....+..++|++++
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSN  347 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTT
T ss_pred             ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCC
Confidence               42246666666666654 588999888776653    3699999987642  23332221   11247788998777


Q ss_pred             CEEEEEecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE----ccCCCeEEEeccc
Q 016522          310 RLLFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT----GSWDTNLKVSLHY  373 (388)
Q Consensus       310 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~dg~v~iw~~~  373 (388)
                      .++++...++  .|++||+.+++.+..+    ..+.+.+..++++|++..++.    ....+.|..|+..
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            8888888888  4667787677766666    456778899999999876663    2345788888753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=8.4e-17  Score=132.97  Aligned_cols=240  Identities=9%  Similarity=-0.001  Sum_probs=167.7

Q ss_pred             cEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          111 WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ...+++++++|++++ +...++.|.+|+..+..       .......+...+.++++.+++ .++++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCC
Confidence            578999999999777 54678899999876532       111112233467789999986 4555554 8899999987


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      ...... +.    ......+..+++++ +++++++...++.|.+|+.... ............+.+++++|+++++++..
T Consensus        96 ~~~~~~-~~----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B           96 SNNQTV-LP----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CSCCEE-CC----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred             CceEee-ee----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence            654432 21    23335788999998 7778877777889999976544 22211222234678899999999777777


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEE
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      .++.|.+||............     ....+..++++++|.++++...++.|.+||..........    ..+...+.++
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~----~~~~~~p~~i  239 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPFT-----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAV  239 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCCS-----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC----CCSCSCEEEE
T ss_pred             CCCEEEEEecCCCceEeeccc-----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec----cCCCCCceeE
Confidence            788999999876654332211     1135789999999977777767889999998765443322    2334678999


Q ss_pred             EECCCCCeEEEccCCCeEEEecccee
Q 016522          350 GLSADGSALCTGSWDTNLKVSLHYYI  375 (388)
Q Consensus       350 ~~~~~~~~l~s~~~dg~v~iw~~~~~  375 (388)
                      +++++|+++++...++.|+++.....
T Consensus       240 ~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          240 AVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCCc
Confidence            99999998888889999999987653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=3e-16  Score=133.30  Aligned_cols=265  Identities=8%  Similarity=-0.011  Sum_probs=182.8

Q ss_pred             CCCCcccCCCCceeeeccc------cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           46 GRAPVSFGPTDLVCCRTLQ------GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~------~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      +.....+++.+.+....+.      ........+++. +++.+++...++.|.+||..+++.+.++.. ......+++++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~   93 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS   93 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence            4556677777777665542      122346778874 345666666789999999999999888854 45688999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-----cceEEEEEEeCCCceEEEee-CCCeEEEEecCCCce
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-----GYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLR  193 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~  193 (388)
                      +++.+++...++.|.+||..+.+       ....+....     .....+++ . ++.++++.. .++.|.++|+.+++.
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~-------~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYE-------ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV  164 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTE-------EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCeEEEEECCCCe-------EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE
Confidence            98555544488999999998754       333333222     14456677 3 345555544 488999999999988


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----------CceEEEECCCCCcceEEEecc-cCCeeEEEEccCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDG  262 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~  262 (388)
                      ...+..      ......+.++| ++++++++..+          +.|.++|..+. +....+... ......++|+|++
T Consensus       165 ~~~i~~------g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~  236 (328)
T 3dsm_A          165 VDELTI------GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTR  236 (328)
T ss_dssp             EEEEEC------SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTS
T ss_pred             EEEEEc------CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCC
Confidence            777632      23456788888 77777776554          78999999876 555455432 2368899999999


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEE----ecCCcEEEEEcccceEEeec
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAG----YSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~i~d~~~~~~~~~~  335 (388)
                      +.|+++..  .|.+||..+++........   ........++++|+ +.+.++.    ..++.|.+||.. ++.+..+
T Consensus       237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~---~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVEADRVPVRPFLE---FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             CEEEEESS--SEEEEETTCSSCCSSCSBC---CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             CEEEEEcc--EEEEEECCCCceeeeeeec---CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            99888765  8999999887653211111   01235789999995 4455554    467899999987 8887776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.79  E-value=5.4e-15  Score=127.19  Aligned_cols=266  Identities=11%  Similarity=0.042  Sum_probs=184.6

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeC-------Cc
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CA  110 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~  110 (388)
                      .+..+++.+.+.+.++..-..+  .++++|||++++++.          .++.|.+||..+.+.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            4467788888888877765554  999999999998886          3678999999998888877654       12


Q ss_pred             cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ....++|+|+|++|+++..  ++.|.++| .+++       .... +...    .++.+.|+++..+++.+.||.+.++|
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence            3568999999999999874  47899999 7754       3333 2211    12556677777788888999999999


Q ss_pred             cCCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCCeeE
Q 016522          188 ITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNT  255 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~  255 (388)
                      . +++...............+ .....+.+.++.++++. .++.+.+.|+..... .+..+..          .......
T Consensus       194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  271 (373)
T 2mad_H          194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence            9 7776643210000011111 12344555444444444 678999999864421 1222211          1122444


Q ss_pred             EEEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEE
Q 016522          256 VKFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYV  323 (388)
Q Consensus       256 ~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i  323 (388)
                      +.++|+++.+++...          ++.|.++|+.+++.+..+....      ....++|+|||+ .++++. .++.|.+
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~V  345 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHI  345 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence            789999988887653          3579999999999888875432      268999999999 777776 4899999


Q ss_pred             EEcccceEEeec
Q 016522          324 WDTLLAKVVLNL  335 (388)
Q Consensus       324 ~d~~~~~~~~~~  335 (388)
                      ||..+++.+..+
T Consensus       346 iD~~t~~vv~~i  357 (373)
T 2mad_H          346 YDAGAGDQDQST  357 (373)
T ss_pred             EECCCCCEEeee
Confidence            999999988773

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=1.2e-17  Score=156.55  Aligned_cols=250  Identities=9%  Similarity=-0.014  Sum_probs=164.0

Q ss_pred             cccCCeeEEEeCCCCCeEE-----EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc-------
Q 016522           65 GHAGKVYSLDWTSERNRIV-----SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------  132 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~-----t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  132 (388)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+............++|+|||+.|+.++.+..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4666799999999999998     4444578999999998865111111122267899999999999988776       


Q ss_pred             ------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceEEEeecccc
Q 016522          133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~  202 (388)
                            |++|++.++...   .........+...+..+.|+|+|. +++.++.++    .|.+||..++......     
T Consensus       198 ~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~~~~l~-----  268 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKDFRLLV-----  268 (695)
T ss_dssp             GGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSSCEEEE-----
T ss_pred             CCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCceEEee-----
Confidence                  999999875421   112223334556788999999985 455554444    6777776655444333     


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCc-ceEEEecc--cCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR-AVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (388)
                       .+...+....+.. +. +++.+.   .++.|.+||+.++.. ....+..+  ...+..++|+ ++.++++...|+..++
T Consensus       269 -~~~~~~~~~~~~~-g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          269 -KGVGAKYEVHAWK-DR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             -ECSSCCEEEEEET-TE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             -cCCCceEEEEecC-Cc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence             3334455555542 44 555544   257899999876521 12344433  4457888888 7778888889998888


Q ss_pred             EECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccceE
Q 016522          277 FDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV  331 (388)
Q Consensus       277 ~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~  331 (388)
                      |.+. +++....+...    ....+..++++|+++.++...    ..+.|++||+.+++.
T Consensus       345 ~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLP----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTCCEEEECCCS----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeCCCCeeEEecCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7654 34444333221    123477788999998766433    346899999987764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=2.4e-16  Score=135.29  Aligned_cols=225  Identities=9%  Similarity=0.084  Sum_probs=149.4

Q ss_pred             CCeeEEEeCCCCCeEEEEeCC---C--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------------
Q 016522           68 GKVYSLDWTSERNRIVSASQD---G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------------  130 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  130 (388)
                      ..+.+++|+|||++|+.++.+   +  .|.+||+.+++.......+ . +..++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            468889999999999887754   3  3788888877765554444 3 9999999999999887642            


Q ss_pred             ---------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-------eEEEEec
Q 016522          131 ---------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-------TCVLWDI  188 (388)
Q Consensus       131 ---------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~v~i~d~  188 (388)
                                     ..|.+|++.++.       ....+.. . .+..+.|+|+|  +++++..++       ...+|.+
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEE-------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTE-------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCe-------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence                           568889987643       2123333 3 78889999987  666665442       3344444


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccCCeeE-EEEc
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNT-VKFF  259 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~  259 (388)
                      .+++.....      .+ ..+..+  +| +++.++.++.+        ..|.+||  .+ ........+...+.. +.|+
T Consensus       206 d~~~~~~l~------~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s  272 (347)
T 2gop_A          206 EDGKEEKMF------EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD  272 (347)
T ss_dssp             ETTEEEEEE------EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET
T ss_pred             CCCceEEec------cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc
Confidence            354433322      22 444444  77 66666655533        3677777  33 333333455667886 8999


Q ss_pred             cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcE-EEEEcccce
Q 016522          260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC-YVWDTLLAK  330 (388)
Q Consensus       260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~  330 (388)
                       ++ ++++++.++.+++| +.+++... +...     ...+.+++|+|  .++++++.++.. .+|.+. ++
T Consensus       273 -dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-----~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          273 -GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-----RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             -TE-EEEEEEETTEEEEE-EESSSEEE-EECS-----SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             -Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-----CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence             88 88999999999999 87554432 2221     23588999999  677777777654 677665 44

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.77  E-value=1.2e-14  Score=125.13  Aligned_cols=273  Identities=11%  Similarity=-0.018  Sum_probs=181.8

Q ss_pred             eCCCCCeEEEEeC--CC---cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCC
Q 016522           75 WTSERNRIVSASQ--DG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN  139 (388)
Q Consensus        75 ~~~~~~~l~t~~~--dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~  139 (388)
                      ..|+++++++...  .+   +|.++|..+++.+..+.....+  .++++|||++++++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467776666553  22   8899999999988887765554  999999999999886          36789999998


Q ss_pred             CCCCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEE-eecccccCCccCe
Q 016522          140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADV  209 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i  209 (388)
                      +.+       ....+...       ......+.++|+|+ +++.+. . ++.|.++| .+++.... +.      ...  
T Consensus       106 t~~-------~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~------~~~--  168 (373)
T 2mad_H          106 TFL-------PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLS------SPT--  168 (373)
T ss_pred             CCc-------EEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcC------CCc--
Confidence            644       22222111       12345789999985 455544 3 58899999 99988776 52      111  


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----cccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                       ++.+.|.....+++.+.||.+.++|. .+ +......     ....++ ....+.+++..++..+.++.+.+.|+....
T Consensus       169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~  245 (373)
T 2mad_H          169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             -eEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence             24445545567777888999999999 65 3332211     111121 234566666555555578899999987553


Q ss_pred             e--eeEeeeccC-----CCCCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522          284 Q--LQVYYQQHG-----ENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (388)
Q Consensus       284 ~--~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (388)
                      .  ...+.....     .........+.++|+++.++++..          .+.|.++|..+++.+..+.     .....
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p  320 (373)
T 2mad_H          246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDV  320 (373)
T ss_pred             ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----CCCCc
Confidence            2  122211000     000112345789999998877653          3579999999999988873     22357


Q ss_pred             eEEEECCCCC-eEEEcc-CCCeEEEeccce
Q 016522          347 TCLGLSADGS-ALCTGS-WDTNLKVSLHYY  374 (388)
Q Consensus       347 ~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~  374 (388)
                      .+++|+|||+ +++++. .++.|.+++...
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            8999999999 788877 589999998754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=4e-17  Score=142.73  Aligned_cols=260  Identities=7%  Similarity=0.005  Sum_probs=162.1

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE-----------------
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT-----------------  114 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-----------------  114 (388)
                      ++....+......++......+.|+|||++|+.++.++.|.+||+.+++.......+......                 
T Consensus        65 ~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  144 (396)
T 3c5m_A           65 LNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEI  144 (396)
T ss_dssp             EETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred             EECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccc
Confidence            344444443333333333444889999999999999999999999988876666555543333                 


Q ss_pred             --EEECCCCCEEEEe-----eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeCC------
Q 016522          115 --CAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGD------  180 (388)
Q Consensus       115 --~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------  180 (388)
                        +.|+|+++.++.+     ..+..|.+||+.++.       . ..+..+...+..+.|+| ++ ..++..+.+      
T Consensus       145 ~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~  215 (396)
T 3c5m_A          145 LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-------L-EVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVD  215 (396)
T ss_dssp             EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-------E-EEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCS
T ss_pred             cccccCCCCcceeeeeeccCCCcceEEEEECCCCc-------E-EeeccCCcccccceECCCCC-CEEEEEecCCCCCCC
Confidence              3567888777654     356689999988744       2 22334567788999999 66 444444333      


Q ss_pred             CeEEEEecCCCceEEEeecccccCC-ccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcceEEEecccCCee
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGDVN  254 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~  254 (388)
                      ..|.+||+..+......     ... ...+..+.|+| +++.|+.++.+     +.|++||+.++ .... +.... ...
T Consensus       216 ~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~~-l~~~~-~~~  286 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIK-----EHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETL-ENEE-VMVMP-PCS  286 (396)
T ss_dssp             CCCEEEETTSCCCEESS-----CCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTC-CEEE-EEECC-SEE
T ss_pred             ceEEEEECCCCceeEee-----ccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCC-CeEE-eeeCC-CCC
Confidence            46888998765533322     211 23578899999 66655554433     34999999866 3222 22112 233


Q ss_pred             EEEEcc-CCCEEEEee----------------CCCcEEEEECCCCceeeEeeeccCC------CCCCCeEEEEecCCCCE
Q 016522          255 TVKFFP-DGNRFGTGS----------------DDGTCRLFDIRTGHQLQVYYQQHGE------NEIPHVTSIAFSISGRL  311 (388)
Q Consensus       255 ~~~~~~-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~  311 (388)
                       +.|+| +|+++++++                .++.|.+||+.+++... +......      ........++|+|+|+.
T Consensus       287 -~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          287 -HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             -EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             -CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCe
Confidence             89999 999888754                34689999998776533 2221110      00001456789999998


Q ss_pred             EEEEec-CCc--EEEEEcccceE
Q 016522          312 LFAGYS-NGD--CYVWDTLLAKV  331 (388)
Q Consensus       312 l~~~~~-dg~--i~i~d~~~~~~  331 (388)
                      |+.++. ++.  |+.+|+..+..
T Consensus       365 l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          365 VLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEEECTTSSCEEEEEECCTTCC
T ss_pred             EEEEecCCCCceEEEEEEccccc
Confidence            877665 454  44445544443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=1.4e-15  Score=125.42  Aligned_cols=217  Identities=12%  Similarity=-0.016  Sum_probs=164.3

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      .++.|++++.++.|.+||.++++       ....+..+. ..+.++.+.|+| ++++  +.++.|..||. +++.+..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE-------IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE-------EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe-------EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEc
Confidence            46889999999999999997765       555666554 468889999987 5666  45788999999 888888874


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCCcceEEEe------cccCCeeEEEEccCCCEEEEeeCC
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDD  271 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d  271 (388)
                      .    .....+.++.+.+ +++++++.+. ++.+..+|. .+ +.+..+.      .+......+++.++|+++++...+
T Consensus        73 ~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~  145 (276)
T 3no2_A           73 A----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KG-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT  145 (276)
T ss_dssp             C----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TS-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred             C----CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CC-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence            2    2234678888888 8888888776 777877775 33 4554443      122345567889999999999999


Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--CCcCCCeeEE
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCL  349 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~  349 (388)
                      +.|..||.. ++.+..+....      ....+.+.++|++++++..++.|..+|..+++.+.++....  ......+..+
T Consensus       146 ~~v~~~d~~-G~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSVKLSG------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             TEEEEECTT-SCEEEEEECSS------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred             CEEEEECCC-CCEEEEEECCC------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence            999999988 88888876532      24567788999999999888899999999999998874210  0112347888


Q ss_pred             EECCCCCeEEEc
Q 016522          350 GLSADGSALCTG  361 (388)
Q Consensus       350 ~~~~~~~~l~s~  361 (388)
                      +..++|.++++.
T Consensus       219 ~~~~~G~i~v~~  230 (276)
T 3no2_A          219 FPLQNGGLYICN  230 (276)
T ss_dssp             EECTTSCEEEEE
T ss_pred             eEcCCCCEEEEe
Confidence            899999888876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.73  E-value=5.9e-15  Score=127.55  Aligned_cols=267  Identities=15%  Similarity=0.141  Sum_probs=185.5

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeC-------Cc
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CA  110 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~  110 (388)
                      .+..+++.+.+.+.++..-..+  .++++||+++|+++.          .++.|.++|..+++.+..+...       ..
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             eEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            4556677788888887765556  899999999888776          3678999999999999888754       22


Q ss_pred             cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ....++|+|||++++++..  ++.|.+.|+.+.+       ....+.-..    +....|++...+++.+.||.+.+.+.
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEEC
Confidence            3567899999999999874  5789999998855       333333211    13445665677788888999998888


Q ss_pred             CCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEec----------ccCCeeEE
Q 016522          189 TTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHG----------HEGDVNTV  256 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~----------~~~~i~~~  256 (388)
                      .+++........+ .....+ ...+.+.+ ++..++..+..+.+.+.|....... +..+..          .......+
T Consensus       247 ~~~~v~~~~~~~~-~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v  324 (426)
T 3c75_H          247 ADGETKVTNTEVF-HTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT  324 (426)
T ss_dssp             CTTCCEEEECCCC-SCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred             CCCcEEEEeeeee-ccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence            6665543221000 111111 12345677 4444444456789999998643211 111110          11222347


Q ss_pred             EEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEEE
Q 016522          257 KFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVW  324 (388)
Q Consensus       257 ~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~  324 (388)
                      +++|+++.+++...          ++.|.++|+.+.+.+..+....      ....++|+|+|+ ++++.. .++.|.++
T Consensus       325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            89999888777642          3579999999999998886543      268999999999 888887 48999999


Q ss_pred             EcccceEEeec
Q 016522          325 DTLLAKVVLNL  335 (388)
Q Consensus       325 d~~~~~~~~~~  335 (388)
                      |+.+++.+.++
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=2.8e-15  Score=140.51  Aligned_cols=275  Identities=12%  Similarity=0.029  Sum_probs=172.4

Q ss_pred             CCCCeEEEEeCCC---c--EEEEECCCCCeeeEee------eCCccEEEEEECCCCCEEEE-----eeCCCcEEEEeCCC
Q 016522           77 SERNRIVSASQDG---R--LIVWNALTSQKTHAIK------LPCAWVMTCAFSPTGQSVAC-----GGLDSVCSIFNLNS  140 (388)
Q Consensus        77 ~~~~~l~t~~~dg---~--v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~vw~~~~  140 (388)
                      |+|++++....++   .  +.+.+...++....+.      .|...+..++|||||++|+.     |+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5666666554433   2  3333444444332222      23346899999999999984     44457899999998


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-------------EEEEecCCCce--EEEeecccccCC
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-------------CVLWDITTGLR--TSVFGGEFQSGH  205 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------v~i~d~~~~~~--~~~~~~~~~~~~  205 (388)
                      +....     ...+...  ....++|+|+| ..|+.++.|..             |++|++.++..  ...+..   ..+
T Consensus       157 g~~~~-----~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~  225 (695)
T 2bkl_A          157 GEWSK-----VDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---TGD  225 (695)
T ss_dssp             CCBCS-----SCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC---CCC
T ss_pred             CCCcC-----CcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec---CCC
Confidence            65210     0011111  12578999998 56777777665             99999998762  233211   344


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCC----ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEEEE
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD  278 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d  278 (388)
                      ...+..+.|+| ++++++.++.++    .|.++|....  ....+..+...+....+ +++.+++...   .++.|.+||
T Consensus       226 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          226 PTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             TTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred             CEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence            56788999999 666666666555    5666655433  45556666666666666 5666444443   257899999


Q ss_pred             CCCCce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          279 IRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       279 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      +.++..  ...+....   ....+..++|+ ++.++++...|+..++|.+. .++....+.   ....+.+..++++|++
T Consensus       302 ~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          302 PAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ---LPGVGAASNLMGLEDL  374 (695)
T ss_dssp             TTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC---CSSSSEECCCBSCTTC
T ss_pred             CCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec---CCCCeEEEEeecCCCC
Confidence            987653  12222211   12247778887 67788888889987777654 355455552   1236678888999999


Q ss_pred             CeEE----EccCCCeEEEeccc
Q 016522          356 SALC----TGSWDTNLKVSLHY  373 (388)
Q Consensus       356 ~~l~----s~~~dg~v~iw~~~  373 (388)
                      ..++    +....+.|++|+..
T Consensus       375 ~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          375 DDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             SEEEEEEEETTEEEEEEEEETT
T ss_pred             CEEEEEEcCCCCCCEEEEEECC
Confidence            8777    44456889888753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.73  E-value=9.7e-15  Score=123.91  Aligned_cols=277  Identities=11%  Similarity=0.007  Sum_probs=186.3

Q ss_pred             EeCCCCCeEEEEeC-----CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeC
Q 016522           74 DWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNL  138 (388)
Q Consensus        74 ~~~~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~  138 (388)
                      ...|+++.+++...     ++.|.+.|..+++.+..+.....+ . ++++|+|++++++.          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34678887777765     679999999999999999887776 4 99999999988875          3678999999


Q ss_pred             CCCCCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-CCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          139 NSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      .+.+       ....+.-.       ......+.++|+|..++++.. .++.|.++|+.+++.+..+..    .  . . 
T Consensus       117 ~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~--g-~-  181 (386)
T 3sjl_D          117 VTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----P--D-C-  181 (386)
T ss_dssp             TTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----C--S-E-
T ss_pred             CCCe-------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----C--C-c-
Confidence            8855       33333211       123456899999854444433 378999999999999888732    1  1 1 


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCee-EEEEc-cCCCEEEEeeCCCcEEEEECCCCc-
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVN-TVKFF-PDGNRFGTGSDDGTCRLFDIRTGH-  283 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-  283 (388)
                       ....|.....+++.+.||.+.+.++....+.......+    ..++. ...|. ++|++++ .+.+|.|.+.|+.+.. 
T Consensus       182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence             12234355677788889999999987632332222111    11221 24564 5776555 5558999999997654 


Q ss_pred             -eeeEeeecc-----CCCCCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522          284 -QLQVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  347 (388)
Q Consensus       284 -~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  347 (388)
                       ....+....     ..-.......++++++++.+++...          .+.|.++|+.+++.+..+.     -...+.
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~  334 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEID  334 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEEC
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----CCCCcc
Confidence             222221000     0000112345778999998887653          2479999999999998873     234788


Q ss_pred             EEEECCCCC-eEEEc-cCCCeEEEeccce
Q 016522          348 CLGLSADGS-ALCTG-SWDTNLKVSLHYY  374 (388)
Q Consensus       348 ~~~~~~~~~-~l~s~-~~dg~v~iw~~~~  374 (388)
                      .|++++|++ +|+++ ..++.|.+++...
T Consensus       335 ~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          335 SINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            999999997 66664 5589999998754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.72  E-value=3e-14  Score=124.35  Aligned_cols=245  Identities=15%  Similarity=0.055  Sum_probs=167.8

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~  145 (388)
                      .....|+|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+++.....   
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~---  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW---  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT---
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc---
Confidence            4688999999998888877789999999887766554443 33334 99999999999888766  78888876532   


Q ss_pred             CCCceeEEe----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe--EEEEeeCCCC
Q 016522          146 GNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV--LSVSISGSNS  219 (388)
Q Consensus       146 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~  219 (388)
                          ....+    ......+.+++++|+++. |+.+..++.|..||..++.......... ......-  ..++++|.++
T Consensus       206 ----~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~-~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          206 ----APTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLEL-SGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             ----CEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCC-CSCCCCSSCCEEEEETTTT
T ss_pred             ----eeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccc-cCCCCCCccccEEEeCCCC
Confidence                11122    214456788999995444 4446678899999998776433211000 1222222  3899999667


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEeccc---------------CCeeEEEEccCCCEEEEee-CCCcEEEEECCCCc
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH  283 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  283 (388)
                      .++++...++.|+.|+....   ...+.++.               .....++++|+|+++++-. .++.|+.|++.++.
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            78888778899999987633   33333332               3478999999999888877 78999999987776


Q ss_pred             eeeEeeeccC---------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          284 QLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       284 ~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      .....-....         .........++++++|.++++-..++.|+.+++
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            4332221000         011235789999999877777777888888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=1.7e-14  Score=121.82  Aligned_cols=240  Identities=11%  Similarity=0.095  Sum_probs=161.5

Q ss_pred             ccCCeeEEEeCCCCCeEEE-------EeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCC-CCEEEEeeCCCcE
Q 016522           66 HAGKVYSLDWTSERNRIVS-------ASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPT-GQSVACGGLDSVC  133 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i  133 (388)
                      .-....+++|+++++++++       +..++.|.+||..+++......    .+...+.+++++++ ++++++.. .+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            3345789999999988877       5778899999988777543221    13356899999999 66555544 4478


Q ss_pred             EEEeCCCCCCCCCCCceeEE-ec----ccccceEEEEEEeCCCceEEEeeCC---------------CeEEEEecCCCce
Q 016522          134 SIFNLNSPTDKDGNLPVSRM-LS----GHKGYVSCCQYVPDEDTHLITSSGD---------------QTCVLWDITTGLR  193 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~i~d~~~~~~  193 (388)
                      .+|+.. +.       .... ..    .....+.++++.++| +++++...+               +.|..||.. ++.
T Consensus        95 ~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           95 LVVQTD-GT-------FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EEEETT-SC-------EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             EEEeCC-CC-------EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence            889987 33       1111 11    122457899999987 555555444               578888876 544


Q ss_pred             EEEeecccccCCccCeEEEEee----CCCCc-EEEEeeCCCceEEEECCCCCc-----ceEEEeccc-CCeeEEEEccCC
Q 016522          194 TSVFGGEFQSGHTADVLSVSIS----GSNSR-MFVSGSCDSTARLWDTRVASR-----AVRTFHGHE-GDVNTVKFFPDG  262 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~  262 (388)
                      ....      .+......++++    | +++ ++++...++.|.+||+.....     ....+..+. ..+..++++++|
T Consensus       165 ~~~~------~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          165 IQVD------TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             EEEE------EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             EEec------cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence            3332      223456788999    8 554 455556678999999762112     122223333 557889999999


Q ss_pred             CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEccc
Q 016522          263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLL  328 (388)
Q Consensus       263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  328 (388)
                      +++++...++.|.+||..+++....+...     ...+.+++|+|+++.|+++ ..++.|..|++..
T Consensus       238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPDGGQPKMRIRCP-----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEETTTEEEEECTTCBSCSEEEECS-----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCEEEEEcCCCCcEeEEEeCC-----CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            98888878889999998866665554332     1348999999999966555 4567899999764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.3e-13  Score=115.46  Aligned_cols=241  Identities=9%  Similarity=-0.013  Sum_probs=169.5

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      +...+.+++++++|.++++...++.|.+|+.. +.       ... ....+...+.++++.+++ .++++...++.|..|
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~   83 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRI   83 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEE
Confidence            34568999999999988877668899999987 32       111 122345678899999886 566666668899999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  266 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  266 (388)
                      |.. +.. ..+..   ......+..+++.+ ++.++++...++.|..||. .+.............+..+++++++++++
T Consensus        84 ~~~-g~~-~~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v  156 (299)
T 2z2n_A           84 TKK-GII-KEYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF  156 (299)
T ss_dssp             CTT-SCE-EEEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCC-CcE-EEEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence            986 332 22211   22445788999998 7778877777889999998 33122112222345689999999998888


Q ss_pred             EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (388)
                      +...++.|..||. +++.... ..   ......+..++++++|++.++...++.|.+||. +++......   ..+...+
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~-~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~~  227 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEF-KI---PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI---PTPNARP  227 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEE-EC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCCE
T ss_pred             EeCCCCEEEEEcC-CCcEEEe-eC---CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC---CCCCCCc
Confidence            7777789999998 5554432 11   112235789999999997776666789999998 655432211   3355678


Q ss_pred             eEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          347 TCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       347 ~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .+++++++|++.++...++.|..|+..
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             eeEEECCCCCEEEeccCCceEEEECCC
Confidence            999999999877776678889999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=5.9e-14  Score=118.51  Aligned_cols=247  Identities=9%  Similarity=0.059  Sum_probs=163.1

Q ss_pred             CCccEEEEEECCCCCEEEE-------eeCCCcEEEEeCCCCCCCCCCCceeEEe----cccccceEEEEEEeCCCceEEE
Q 016522          108 PCAWVMTCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~  176 (388)
                      .-....+++|++++.++++       +..++.|.+|+..++.       .....    .++...+.++++.++++.+++ 
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-   87 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDANQLFV-   87 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSSSEEEE-
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-------EEEEEecccCCCCCCCceEEEecCCCcEEE-
Confidence            3445789999999988887       6778899999976643       11111    124567889999998224444 


Q ss_pred             eeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCCCCcEEEEeeCC---------------CceEEEECCCCC
Q 016522          177 SSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVAS  240 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~  240 (388)
                      ++..+.|.+||.. ++.... .. .........+.++++++ +++++++...+               +.|..||.. + 
T Consensus        88 ~~~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-  162 (314)
T 1pjx_A           88 ADMRLGLLVVQTD-GTFEEIAKK-DSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-  162 (314)
T ss_dssp             EETTTEEEEEETT-SCEEECCSB-CTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-
T ss_pred             EECCCCEEEEeCC-CCEEEEEec-cCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C-
Confidence            4444579999988 654432 21 10012234588999998 67777766554               567777765 3 


Q ss_pred             cceEEEecccCCeeEEEEc----cCCCEEEEe-eCCCcEEEEECC-CCceee--EeeeccCCCCC-CCeEEEEecCCCCE
Q 016522          241 RAVRTFHGHEGDVNTVKFF----PDGNRFGTG-SDDGTCRLFDIR-TGHQLQ--VYYQQHGENEI-PHVTSIAFSISGRL  311 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~~  311 (388)
                      .. ..+..+......++|+    |+++.++.+ ..++.|.+||+. ++....  .+...  .... ..+..++++++|++
T Consensus       163 ~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          163 QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCCE
T ss_pred             CE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCCE
Confidence            33 3333344567889999    999766554 567899999986 343211  11111  1111 34788999999998


Q ss_pred             EEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEeccce
Q 016522          312 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSLHYY  374 (388)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~  374 (388)
                      +++...++.|.+||..+++....+    ..+...+.+++|+++++.| ++...++.|..|....
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            888778889999998866655444    3445779999999999945 4555678888887654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=3.5e-15  Score=140.85  Aligned_cols=248  Identities=10%  Similarity=0.037  Sum_probs=157.8

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCC-----CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc--------
Q 016522           66 HAGKVYSLDWTSERNRIVSASQD-----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV--------  132 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------  132 (388)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44478899999999999877654     3699999999987543 222222357899999 99988877654        


Q ss_pred             ------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----CCeEEEEecCCC--ceEEEeec
Q 016522          133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTG--LRTSVFGG  199 (388)
Q Consensus       133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~--~~~~~~~~  199 (388)
                            |++|++.++...   .........+...+..+.|+|+|. +++..+.     ...|.+||+.++  .....+  
T Consensus       239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--  312 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--  312 (741)
T ss_dssp             CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred             CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence                  889998764311   011222223334578999999985 4554443     348999999877  312333  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeC----CCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                         ..+........ .| +++.|+..+.    ++.|.+||+..+. .....+..+...+..++|+ ++.++++...|+..
T Consensus       313 ---~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          313 ---IPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             ---ECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred             ---cCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence               23333344443 35 5555555554    3459999987641 3333444445556677887 66778888888887


Q ss_pred             EEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccceE
Q 016522          275 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV  331 (388)
Q Consensus       275 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~  331 (388)
                      ++|.+. ++.....+...    ....+..+.++|+++.++...    ..+.|++||+.+++.
T Consensus       387 ~l~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          387 QVLAFDLDGKPAGAVSLP----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEETTSCEEEECBCS----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEeCCCCceeeccCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            777554 34444433221    123478899999988555332    346899999988774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=1.5e-14  Score=136.65  Aligned_cols=274  Identities=12%  Similarity=0.006  Sum_probs=170.4

Q ss_pred             CCCCeEEEEeCCCc---EEEEEC--C---CCCeeeEe------eeCCccEEEEEECCCCCEEEEeeCC-----CcEEEEe
Q 016522           77 SERNRIVSASQDGR---LIVWNA--L---TSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFN  137 (388)
Q Consensus        77 ~~~~~l~t~~~dg~---v~iwd~--~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~  137 (388)
                      |+|++++....++.   -.+|-.  .   .++....+      ..+...+..++|||||++|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            78887776554432   445543  3   33322221      1122368899999999999887654     3699999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--------------eEEEEecCCCce--EEEeeccc
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--------------TCVLWDITTGLR--TSVFGGEF  201 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~v~i~d~~~~~~--~~~~~~~~  201 (388)
                      +.++.       .... ..+...+..++|+|+ +. |+.++.++              .|++|++.++..  ...+..  
T Consensus       196 l~tg~-------~~~~-~~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~--  263 (741)
T 1yr2_A          196 VADGK-------PLAD-ELKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT--  263 (741)
T ss_dssp             TTTCC-------EEEE-EEEEEESCCCEESTT-SE-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC--
T ss_pred             CCCCC-------CCCc-cCCCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc--
Confidence            98865       1111 112222357899998 55 55444443              389999987752  223311  


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCC----
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD----  271 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  271 (388)
                       ..+...+..+.|+| ++++++..+.+     ..|.+||+..+... ...+..+...+.... +|+|+.|+..+.+    
T Consensus       264 -~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~  340 (741)
T 1yr2_A          264 -PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL  340 (741)
T ss_dssp             -TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred             -CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence             22334588999999 77777666544     38999998765223 555655555555553 4889988887753    


Q ss_pred             CcEEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEE
Q 016522          272 GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       272 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      +.|.+||+.++. ....+....    ...+..+.++ ++.++++...|+..++|.+. .++....+.   ..+.+.+..+
T Consensus       341 ~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~  412 (741)
T 1yr2_A          341 KKIVRVDLSGSTPRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS---LPGIGSASGL  412 (741)
T ss_dssp             CEEEEEECSSSSCEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB---CSSSCEEEEE
T ss_pred             CEEEEEeCCCCccccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc---CCCCeEEEEe
Confidence            459999998752 333333221    1236677777 56677888889877766554 355555552   2245678999


Q ss_pred             EECCCCCeEE----EccCCCeEEEeccc
Q 016522          350 GLSADGSALC----TGSWDTNLKVSLHY  373 (388)
Q Consensus       350 ~~~~~~~~l~----s~~~dg~v~iw~~~  373 (388)
                      +++|++..|+    +....+.|++|+..
T Consensus       413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          413 SGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             ECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            9999988776    34456888888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=2.2e-14  Score=124.02  Aligned_cols=275  Identities=11%  Similarity=0.003  Sum_probs=185.5

Q ss_pred             CCCCeEEEEeC-C----CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCC
Q 016522           77 SERNRIVSASQ-D----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSP  141 (388)
Q Consensus        77 ~~~~~l~t~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~  141 (388)
                      +++++++++.. +    +.|.++|..+++.+..+.....+  .++++|+|++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            45565555443 2    69999999999999999987776  899999999998886          3678999999885


Q ss_pred             CCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          142 TDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      +       ....+.-.       ......+.++|+|.. ++.+. . ++.|.+.|+.+++.+..+..    ..   .  .
T Consensus       160 ~-------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~-lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g---~--~  222 (426)
T 3c75_H          160 L-------PIADIELPDAPRFLVGTYQWMNALTPDNKN-LLFYQFSPAPAVGVVDLEGKTFDRMLDV----PD---C--Y  222 (426)
T ss_dssp             C-------EEEEEEETTCCCCCBSCCGGGSEECTTSSE-EEEEECSSSCEEEEEETTTTEEEEEEEC----CS---E--E
T ss_pred             c-------EEEEEECCCccccccCCCcceEEEcCCCCE-EEEEecCCCCeEEEEECCCCeEEEEEEc----CC---c--e
Confidence            5       33333211       123346799999854 55544 3 68899999999998888742    11   1  2


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEE----EecccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCceee-
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT----FHGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-  286 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  286 (388)
                      ...|.....+++.+.||.+.+.+.... +....    +.....++ ..+.|.+++..++..+..+.+.+.|+....... 
T Consensus       223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~  301 (426)
T 3c75_H          223 HIFPASPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR  301 (426)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred             eeccCCCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence            233434466677778888888888443 33321    11111121 235678888888777888999999987544221 


Q ss_pred             -Eeeec--cCCC---CCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          287 -VYYQQ--HGEN---EIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       287 -~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                       .+...  ....   .......++++|+++.+++...          .+.|.++|..+.+.+..+.     -......++
T Consensus       302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-----vg~~P~gia  376 (426)
T 3c75_H          302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-----LGHEIDSIN  376 (426)
T ss_dssp             CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEE
T ss_pred             eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-----CCCCcCeEE
Confidence             11100  0000   0011223689999997777643          3479999999999998873     223588999


Q ss_pred             ECCCCC-eEEEcc-CCCeEEEeccceee
Q 016522          351 LSADGS-ALCTGS-WDTNLKVSLHYYIF  376 (388)
Q Consensus       351 ~~~~~~-~l~s~~-~dg~v~iw~~~~~~  376 (388)
                      |+|||+ +++++. .++.|.|++.....
T Consensus       377 ~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          377 VSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            999999 888888 59999999975433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=1.5e-14  Score=123.69  Aligned_cols=278  Identities=10%  Similarity=0.000  Sum_probs=174.5

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEe--CCCcEEEEECCCCCeeeEee-------eCCccEEEEEECCCCCEEEEe
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALTSQKTHAIK-------LPCAWVMTCAFSPTGQSVACG  127 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~  127 (388)
                      ++.+..+.   ..+..++++|+|+.+++..  .++.++||.+.+++ +..+.       .+-..+..++++++++++++-
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D   84 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD   84 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred             eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence            34444444   6799999999999888864  23435556554443 22221       233579999999999876665


Q ss_pred             eC-----CCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCce
Q 016522          128 GL-----DSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLR  193 (388)
Q Consensus       128 ~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~  193 (388)
                      ..     ++.|.+||+.+++       ....+.      .+...+..+++.++++..+++..   .++.|.+||+.+++.
T Consensus        85 ~g~~~~~~~~i~~~d~~tg~-------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           85 NGNQSKSVPKLVAWDTLNNQ-------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             CHHHHTSCCEEEEEETTTTE-------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CCCCcCCCCeEEEEECCCCe-------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            43     5789999998654       222222      12345688999986555556655   678999999998876


Q ss_pred             EEEeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522          194 TSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  272 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  272 (388)
                      ...+     ..|..... ...+.+ ++..+.+.+.+|.+..|.               ..+..++|+|+++.|+.+..++
T Consensus       158 ~r~~-----~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          158 ARVL-----QGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             EEEC-----TTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSC
T ss_pred             EEEe-----cCCCcccccccceeE-CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCC
Confidence            6655     22211100 022333 455565666677665442               2357899999999888887665


Q ss_pred             -cEEEEECC---CCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC
Q 016522          273 -TCRLFDIR---TGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  343 (388)
Q Consensus       273 -~i~i~d~~---~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  343 (388)
                       .+..++..   .+..     ...+...   ........++++++|.++++...++.|.+||..+++......   ..+.
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---~~~~  290 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---DEKL  290 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE---CGGG
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE---CCce
Confidence             45444432   1110     0000000   001135678999999988888889999999985565433221   1234


Q ss_pred             CCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          344 GRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       344 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ..+.+++|.+++.++++.+..+.+.+|..
T Consensus       291 ~~p~~va~~~~g~l~v~~~~~~~~~~f~~  319 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCNQLHHSAPLNA  319 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred             ecCCeeEECCCCcEEEEeCcccccccccc
Confidence            56899999999998888877666666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.67  E-value=4.8e-13  Score=111.90  Aligned_cols=234  Identities=12%  Similarity=0.102  Sum_probs=153.3

Q ss_pred             CCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          108 PCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       108 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      ......+..|++++ .++++...++.|..|+..++.       . ..+ .....+.++++.+++. +++ +. ++.|.+|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSGG-YVA-TI-GTKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTSS-EEE-EE-TTEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCCC-EEE-EE-CCeEEEE
Confidence            34456688899954 556666678899999988643       1 122 2346788999999874 444 44 5679999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---------CceEEEECCCCCcceEEEecccCCeeEEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVK  257 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (388)
                      |..+++......... ......+..++++| +++++++....         ..-.+|.+..... ...+..+....+.++
T Consensus        79 d~~~g~~~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           79 NWKEQSAVVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLD  155 (297)
T ss_dssp             ETTTTEEEEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEE
T ss_pred             ECCCCcEEEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceE
Confidence            998876544332110 11234578899998 67766654321         2234555443322 333333445678999


Q ss_pred             EccCCCEEE-EeeCCCcEEEEEC--CCCcee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          258 FFPDGNRFG-TGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       258 ~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      |+|+++.|+ +.+.++.|.+|++  .++...  ..+...  .........++++++|++.++...++.|..||..+++.+
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            999998765 4556788999997  455432  112111  111234788999999987777777888999999888888


Q ss_pred             eeccCCCCCcCCCeeEEEEC-CCCCeEEEcc
Q 016522          333 LNLGSLQNSHEGRITCLGLS-ADGSALCTGS  362 (388)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~  362 (388)
                      ..+    ..+...+++++|. |+++.|+.++
T Consensus       234 ~~i----~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          234 QTV----KLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEE----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEE----ECCCCCceEEEEeCCCCCEEEEEc
Confidence            777    4555689999998 7877665544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.66  E-value=1.8e-14  Score=134.81  Aligned_cols=249  Identities=10%  Similarity=0.066  Sum_probs=162.1

Q ss_pred             cccCCeeEEEeCCCCCeEEEE-----eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--------
Q 016522           65 GHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--------  131 (388)
Q Consensus        65 ~h~~~v~~~~~~~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  131 (388)
                      +|...+..++|||||++||-+     +....|++||+.+++.+.. ..+......++|+ ||+.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            466679999999999988843     2335799999999986543 1111113567899 999999888774        


Q ss_pred             -----cEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeC---CCeEEEEecCCCc-eEEEeeccc
Q 016522          132 -----VCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGL-RTSVFGGEF  201 (388)
Q Consensus       132 -----~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~-~~~~~~~~~  201 (388)
                           .|++|++.++...   -........ |...+..+.|+|+|..++++...   ++.|.++|+.++. ....+    
T Consensus       204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l----  276 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV----  276 (693)
T ss_dssp             -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE----
T ss_pred             cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE----
Confidence                 3999998874411   111222223 44457789999998655555443   3589999998763 23333    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cE
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TC  274 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i  274 (388)
                       ..+....... +++.++.+++.+..+   +.|..+|+..+.. ....+..|...+.  .|+++++.|+....++   .|
T Consensus       277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence             2334444444 555456666665544   6789999887532 2355666766665  8999998887766544   68


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC----CcEEEEEcccceE
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV  331 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  331 (388)
                      ++|++..+. ...+...    ....+..+.++++++.++....+    +.++.||+.+++.
T Consensus       353 ~~~d~~g~~-~~~l~~p----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          353 EQFDYEGKR-VREVALP----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEECTTSCE-EEEECCS----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCCCe-eEEeecC----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            999987543 3333221    12246777888888866665544    7899999877654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=2.5e-12  Score=107.65  Aligned_cols=239  Identities=10%  Similarity=0.008  Sum_probs=168.2

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW  186 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~  186 (388)
                      ....+.++++.++|+.+++...++.|.+|+.. +.       ... ........+..+++.+++ .++++...++.|..|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~   88 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKL   88 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEE
Confidence            34568999999999988887778999999977 32       111 222334678889998876 566666667889999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      |.. ++.. .+..   ......+..+++.+ ++.++++...++.|..||.. + .... .+......+..++++++++++
T Consensus        89 d~~-g~~~-~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           89 SKK-GGFT-EYPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             CTT-SCEE-EEEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             CCC-CCeE-EecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-C-CEEEccCCCCCCCceeEEECCCCCEE
Confidence            987 5543 2211   22346788999997 77787777768899999987 3 3322 222234568899999999977


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee-ccCCCCCcCC
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN-LGSLQNSHEG  344 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~  344 (388)
                      ++...++.|..||. +++... +..   ......+..++++++|.+.++....+.|.+||. +++.... +    ..+..
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~----~~~~~  230 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI----PTPNA  230 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC----SSTTC
T ss_pred             EEecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC----CCCCC
Confidence            76666788999998 554433 221   122235889999999987776666778999998 4443332 2    23456


Q ss_pred             CeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          345 RITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .+.+++++++|++.++...++.|..|+..
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            78999999999877777677899998864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=9.9e-13  Score=109.99  Aligned_cols=233  Identities=14%  Similarity=0.089  Sum_probs=153.0

Q ss_pred             cccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522           63 LQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      +..+..---+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||..++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            33344456688999954 4666667788999999887765 3333 3456999999999995554 3 567999998764


Q ss_pred             CCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEee-----------CCCeEEEEecCCCceEEEeecccccCCccC
Q 016522          142 TDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSS-----------GDQTCVLWDITTGLRTSVFGGEFQSGHTAD  208 (388)
Q Consensus       142 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  208 (388)
                      .     ........  .....+.++++.|+|. ++++..           ..+.|..+|.. +......      .....
T Consensus        84 ~-----~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~------~~~~~  150 (297)
T 3g4e_A           84 S-----AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF------DQVDI  150 (297)
T ss_dssp             E-----EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE------EEESB
T ss_pred             c-----EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEe------ecccc
Confidence            3     11111111  1234578899999874 444432           12345555543 3332222      23345


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECC--CCC----cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTR--VAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      .+.++|+|++..++++.+.++.|..||+.  ++.    +.+..+..+...+..++++++|++.++...++.|..||..++
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            67899999444455666778899999974  221    112222334456789999999988888777888999999888


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEec-CCCCEEEEEec
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFS-ISGRLLFAGYS  317 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  317 (388)
                      +.+..+....     ..+++++|. |+++.|++++.
T Consensus       231 ~~~~~i~~p~-----~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          231 KRLQTVKLPV-----DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEECSS-----SBEEEEEEESGGGCEEEEEEB
T ss_pred             eEEEEEECCC-----CCceEEEEeCCCCCEEEEEcC
Confidence            8887775432     248999998 88887776654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.64  E-value=2.4e-14  Score=121.78  Aligned_cols=270  Identities=10%  Similarity=0.027  Sum_probs=180.8

Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCC-------ccE
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWV  112 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~~v  112 (388)
                      ...++...+.+.++..-..+  .+.++||+++++++.          .++.|.+||..+++.+.++..+.       ...
T Consensus        49 svID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             EEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            36778888898888766666  799999999888886          36899999999999999987651       235


Q ss_pred             EEEEECCCCCEEEEeeC--CCcEEE--EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          113 MTCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ..++++|||++++++..  +..+.+  +|..+          ...+... +   +....|++...+++.+.||.+.+.|+
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----------v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD----------DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE----------EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----------ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEEC
Confidence            68999999999999875  456888  88764          1111110 1   12245666677788888999999998


Q ss_pred             CC-----CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCC
Q 016522          189 TT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGD  252 (388)
Q Consensus       189 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~  252 (388)
                      .+     ++......... .....+.   . .+.++.++ ..+. +.+.+.|...... .+..+..          ....
T Consensus       193 ~~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CSSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             ccccccCCeEEEEeeeee-eCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            86     33221100000 1112222   2 55344444 4445 8999999864311 1111110          1112


Q ss_pred             eeEEEEccCCCEEEEeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE-EEEEe-cCCcE
Q 016522          253 VNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDC  321 (388)
Q Consensus       253 i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i  321 (388)
                      ...++++|+++.++++..         ++.+.++|+.+.+.+..+....      ....++|+|||+. +++.. .++.|
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeE
Confidence            223789999998887543         2356799999999888776543      2689999999984 55555 48999


Q ss_pred             EEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .++|+.+++.+..+.    .. .....+++.+
T Consensus       340 sVID~~t~kvv~~I~----vg-~~P~~i~~~~  366 (368)
T 1mda_H          340 DIYDAASDQDQSSVE----LD-KGPESLSVQN  366 (368)
T ss_dssp             EEEESSSCEEEEECC----CC-SCCCEEECCC
T ss_pred             EEEECCCCcEEEEEE----CC-CCCCEEEeec
Confidence            999999999999883    22 3445666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.64  E-value=3.4e-13  Score=113.28  Aligned_cols=243  Identities=9%  Similarity=0.062  Sum_probs=157.3

Q ss_pred             eeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          101 KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      .+..+...........|+|+++ ++++...++.|..|+... .        ...+..+...+..+++.++| +++++...
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--------~~~~~~~~~~~~gl~~d~dG-~l~v~~~~  105 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--------VDVLLDATAFTNGNAVDAQQ-RLVHCEHG  105 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--------EEEEEESCSCEEEEEECTTS-CEEEEETT
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--------EEEEeCCCCccceeeECCCC-CEEEEECC
Confidence            4444555556678899999998 566667788999998743 1        23344456678899999987 55555556


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE----eeC-------------CCceEEEECCCCCcc
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASRA  242 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~  242 (388)
                      ++.|.+||.. +...... ..........+..+++.+ +++++++    |..             .+.|..||..++ ..
T Consensus       106 ~~~v~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~  181 (305)
T 3dr2_A          106 RRAITRSDAD-GQAHLLV-GRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PL  181 (305)
T ss_dssp             TTEEEEECTT-SCEEEEE-CEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CC
T ss_pred             CCEEEEECCC-CCEEEEE-eccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cE
Confidence            6889999986 5433222 111111123567899998 7788776    432             246777776544 22


Q ss_pred             eEEEecccCCeeEEEEccCCCEEEEeeCC------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      . .+. .......++|+|+++.|+.+...      +.|.+|++..+. +......... .......++++++|++. +++
T Consensus       182 ~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~  256 (305)
T 3dr2_A          182 Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SSS  256 (305)
T ss_dssp             E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-ECC
T ss_pred             E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-Eec
Confidence            2 222 44567889999999988777665      689999987654 2111110000 11234678899999944 444


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      .+ .|.+|+. .++.+..+.    .+. .+.+++|+++++.|+.++.++..++
T Consensus       257 ~~-gv~~~~~-~g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          257 GT-GVCVFDS-DGQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SS-EEEEECT-TSCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CC-cEEEECC-CCCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            44 5999997 566666552    223 5889999999988888887765554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=5.4e-12  Score=110.07  Aligned_cols=247  Identities=9%  Similarity=0.095  Sum_probs=161.9

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEe
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWD  187 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d  187 (388)
                      .....++|+++++++++...++.|++||..++.       ....... ..... ++|+++++ .++++..++  .|.+++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEE
Confidence            357899999999988887778999999998643       2222222 22233 89999874 566666655  899999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-----ecccCCe--eEEEEcc
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDV--NTVKFFP  260 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i--~~~~~~~  260 (388)
                      ...+.....+.. ........+.+++++|.++.+++ +..++.|+.||.....  ...+     .++...-  ..++|+|
T Consensus       201 ~~~~~~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          201 KASGWAPTRIGQ-LGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             GGGTTCEEEEEE-CCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             cCCCceeEEeee-ccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeC
Confidence            877654333311 10114466788999985555555 6678899999988652  2222     1122222  3999999


Q ss_pred             C-CCEEEEeeCCCcEEEEECCCCceeeEeeecc-CC---------CCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEccc
Q 016522          261 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GE---------NEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL  328 (388)
Q Consensus       261 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  328 (388)
                      + +.++++-..++.|+.|+....  ...+.... ..         ........++++|+|+++++-. .++.|+.|++.+
T Consensus       277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            5 666666667889999997643  22222211 00         0123478999999999777776 788999999877


Q ss_pred             ceEEeeccCC-C---------CCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          329 AKVVLNLGSL-Q---------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       329 ~~~~~~~~~~-~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +......... .         ...-.....++++++|.++++-..++.|+.+..
T Consensus       355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7654332110 0         011246899999999988888888888887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=9.6e-14  Score=118.36  Aligned_cols=180  Identities=12%  Similarity=0.064  Sum_probs=131.8

Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE-----eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~  234 (388)
                      ++..+++++.. .++++|+.++ +.+|++........     +.......+.. |+.++|   ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            57889999986 6788888875 55698654330000     10000123455 999999   56788888 88999999


Q ss_pred             ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  314 (388)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (388)
                      |++.. ........|..++.++.+.+.  .+++++.||.|.+||+.++..... .        ..|++++|+|+|  +++
T Consensus       112 dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~-~--------~~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          112 DLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL-A--------QNVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             ESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE-E--------ESEEEEEECSSE--EEE
T ss_pred             Echhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc-c--------CCceEEEEcCCc--eEE
Confidence            99877 345566677888888877654  388899999999999998776431 1        149999999999  678


Q ss_pred             EecCCcEEEEEcccceE--EeeccCCC-----CCcCCCeeEEEECCCCCeEEE
Q 016522          315 GYSNGDCYVWDTLLAKV--VLNLGSLQ-----NSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       315 ~~~dg~i~i~d~~~~~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      |..||++++|+....+.  ...+....     .+|...|.+|.|.+++.++++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999999999887774  44442100     146789999999999998887

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=7.4e-14  Score=119.05  Aligned_cols=172  Identities=15%  Similarity=0.096  Sum_probs=131.7

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      +++.+++++...++++|+.++ +.+|++.+..           ...... ... |+.++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            699999999999999999884 6669864332           112333 444 999999  99999999 889999999


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      +.+..       .......|...+.++.+.+.  + +++++.||.|.+||+.++....         +...|++++|+| 
T Consensus       113 v~sl~-------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---------~~~~Vs~v~WSp-  172 (388)
T 1xip_A          113 LEELS-------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---------LAQNVTSFDVTN-  172 (388)
T ss_dssp             SSSTT-------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---------EEESEEEEEECS-
T ss_pred             chhhh-------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---------ccCCceEEEEcC-
Confidence            98743       23344566677888777653  3 8889999999999999877643         235799999999 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcc--eEEE------e---cccCCeeEEEEccCCCEEEEee
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRA--VRTF------H---GHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      ++  ++.|..||.+++|+.... ..  ...+      .   +|...|.++.|.+++.++++-+
T Consensus       173 kG--~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          173 SQ--LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SE--EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             Cc--eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            55  678999999999988765 32  3344      2   3678899999999999888743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.58  E-value=1.3e-11  Score=104.60  Aligned_cols=228  Identities=16%  Similarity=0.102  Sum_probs=146.5

Q ss_pred             cEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ......|+|++ .++++...++.|..|+..++.       . ..+. ....+.++.+.+++ .+++ ++.+ .|.+||..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~~-~~~~v~~i~~~~dg-~l~v-~~~~-gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-------K-TVHA-LPFMGSALAKISDS-KQLI-ASDD-GLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-------E-EEEE-CSSCEEEEEEEETT-EEEE-EETT-EEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-------E-EEEE-CCCcceEEEEeCCC-eEEE-EECC-CEEEEECC
Confidence            35677899975 556666678899999987643       1 1222 24578999999986 4444 3444 49999998


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  263 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (388)
                      +++........ .......+..++++| +++++++...      .+.|..++  .+ . +..+..+......++|+|+++
T Consensus       118 ~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          118 TGVLTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGT  191 (326)
T ss_dssp             TCCEEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSC
T ss_pred             CCcEEEEeeCC-CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCC
Confidence            88754433110 011224688999998 6666665432      24555555  22 2 333333445678999999998


Q ss_pred             EEEEe-eCCCcEEEEECC--CC-cee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          264 RFGTG-SDDGTCRLFDIR--TG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       264 ~l~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      .++.+ +.++.|.+||+.  ++ ...  ..+...  .........++++++|.+.++...++.|..||. +++.+..+  
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i--  266 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY--  266 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE--
T ss_pred             EEEEEECCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE--
Confidence            77554 457889999986  55 321  122111  111224678999999987777766789999998 56666655  


Q ss_pred             CCCCcCCCeeEEEEC-CCCCeEEEccC
Q 016522          338 LQNSHEGRITCLGLS-ADGSALCTGSW  363 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~-~~~~~l~s~~~  363 (388)
                        ..+...+++++|+ +++..|+.++.
T Consensus       267 --~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          267 --EVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             --ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             --ECCCCCcEEEEEecCCCCEEEEEec
Confidence              3445679999998 88876655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.57  E-value=4.4e-12  Score=106.51  Aligned_cols=236  Identities=11%  Similarity=0.068  Sum_probs=155.8

Q ss_pred             eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      ..+..+........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            34444556678899999998 6677778899999997 454 45566677779999999999977776666889999875


Q ss_pred             CCCCCCCCCcee-EEeccc-ccceEEEEEEeCCCceEEE----eeC-------------CCeEEEEecCCCceEEEeecc
Q 016522          140 SPTDKDGNLPVS-RMLSGH-KGYVSCCQYVPDEDTHLIT----SSG-------------DQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       140 ~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      . .     .... ....+. ...+.++++.++| .++++    |..             .+.|..+|..+++.....   
T Consensus       116 g-~-----~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---  185 (305)
T 3dr2_A          116 G-Q-----AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---  185 (305)
T ss_dssp             S-C-----EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred             C-C-----EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence            2 2     1111 111111 1346779999987 55664    332             356888888766544332   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceE---EE-ecccCCeeEEEEccCCCEEEEeeC
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVR---TF-HGHEGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~l~~~~~  270 (388)
                          .......++|+| +++.|+.+...      +.|.+|++....  +.   .+ .........++++++|++. +++.
T Consensus       186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~  257 (305)
T 3dr2_A          186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG  257 (305)
T ss_dssp             ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCS
T ss_pred             ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecC
Confidence                223467899999 66666555544      689999987542  21   11 1123445678999999944 4444


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      + .|.+|+. +++.+..+....      .+..++|+++++.|++++.++ ++.++
T Consensus       258 ~-gv~~~~~-~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          258 T-GVCVFDS-DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             S-EEEEECT-TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             C-cEEEECC-CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            4 4999997 466666554322      378899999999888887654 44443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=1.9e-11  Score=103.59  Aligned_cols=224  Identities=11%  Similarity=0.032  Sum_probs=145.6

Q ss_pred             CeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        69 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      -..+.+|+|++. ++++...++.|..||..+++.. .+.. ...+.+++|+++|+++++. .+ .|.+||..++.     
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-----  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-----  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-----
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-----
Confidence            356788999754 5666667889999998876543 3332 4569999999999877765 44 48999987643     


Q ss_pred             CceeEEec----ccccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          148 LPVSRMLS----GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       148 ~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                        ......    .....+.++++.|+| +++++...      .+.|..++  +++.....      ........++|+| 
T Consensus       121 --~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~------~~~~~~~~i~~s~-  188 (326)
T 2ghs_A          121 --LTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF------ADISIPNSICFSP-  188 (326)
T ss_dssp             --EEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE------EEESSEEEEEECT-
T ss_pred             --EEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee------CCCcccCCeEEcC-
Confidence              111111    112468899999987 44444332      24566666  44433222      2223567899998 


Q ss_pred             CCc-EEEEeeCCCceEEEECC--CC-Cc----ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          218 NSR-MFVSGSCDSTARLWDTR--VA-SR----AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       218 ~~~-~l~~~~~dg~i~i~d~~--~~-~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +++ ++++.+.++.|.+||+.  ++ ..    .+..+......+..++++++|++.++...++.|..||. +++....+.
T Consensus       189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            555 44555667899999986  32 11    12222223455778999999988777767788999998 566655554


Q ss_pred             eccCCCCCCCeEEEEec-CCCCEEEEEecCC
Q 016522          290 QQHGENEIPHVTSIAFS-ISGRLLFAGYSNG  319 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg  319 (388)
                      ...     ..+++++|+ ++++.|++++..+
T Consensus       268 ~~~-----~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          268 VPG-----KQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CSC-----SBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCC-----CCcEEEEEecCCCCEEEEEecCC
Confidence            322     248999998 8888776665443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.54  E-value=1.3e-12  Score=111.07  Aligned_cols=290  Identities=13%  Similarity=0.072  Sum_probs=181.7

Q ss_pred             cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522           42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG  121 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  121 (388)
                      ..+.+.....|+ .+.+....+..+...+.++...+++. |..++.+  |..+|. +++....+...........+.  +
T Consensus        35 v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~  107 (330)
T 3hxj_A           35 LGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--E  107 (330)
T ss_dssp             CSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--T
T ss_pred             EEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--C
Confidence            334445566677 56666666665666678888877775 4445544  888885 666554444333222222333  5


Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      ..+.+++.++.+..+|.. +.       .......+...+.++...+++  .+..++.++.|..+|.. ++....+.   
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~---  173 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFK---  173 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEE---
T ss_pred             CEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEe---
Confidence            567778888999999987 33       233333344445555665554  37778888999999998 77666652   


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                        .....+.++...+ ++.+++ ++  +.|..+| .++ ............+.++...+++. |..++.++.|..+|. +
T Consensus       174 --~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~  243 (330)
T 3hxj_A          174 --TNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D  243 (330)
T ss_dssp             --CSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred             --cCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence              3344566666655 555544 44  7899999 544 44445554556688888887775 555667788888874 5


Q ss_pred             CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      +.....+.....     .+..+.+.+++ .|.+++.+|.|..+|. +++....+    ......+.++...++|. |..|
T Consensus       244 g~~~~~~~~~~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~----~~~~~~~~~~~~d~~g~-l~~g  311 (330)
T 3hxj_A          244 GTEKWRFKTGKR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF----ETGSWIIATPVIDENGT-IYFG  311 (330)
T ss_dssp             SCEEEEEECSSC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTCC-EEEE
T ss_pred             CCEeEEeeCCCC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE----EcCCccccceEEcCCCE-EEEE
Confidence            555554433211     13344555555 5667778889999996 67666655    23345677788877776 6678


Q ss_pred             cCCCeEEEeccce
Q 016522          362 SWDTNLKVSLHYY  374 (388)
Q Consensus       362 ~~dg~v~iw~~~~  374 (388)
                      +.+|.+++.....
T Consensus       312 t~~G~~~~~~~~~  324 (330)
T 3hxj_A          312 TRNGKFYALFNLE  324 (330)
T ss_dssp             CTTSCEEEEEC--
T ss_pred             cCCCeEEEEeccc
Confidence            8899998876554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.53  E-value=1.9e-12  Score=110.13  Aligned_cols=255  Identities=9%  Similarity=-0.090  Sum_probs=166.7

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCCCCCCCCCceeEEeccc--
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH--  157 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--  157 (388)
                      +|.++|..+++.+.++.....+  .++++|++++++++.          .++.|.+||..+.+       ....+...  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence            7889999999999999988776  799999999999886          36889999999865       44444322  


Q ss_pred             -----ccceEEEEEEeCCCceEEEee-C-CCeEEE--EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          158 -----KGYVSCCQYVPDEDTHLITSS-G-DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       158 -----~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                           ......+.++|+|.. ++++. . +..|.+  +|..+   ...+.    .+.  .   ....|.....+++.+.|
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~-lyVan~~~~~~v~V~~iD~~t---v~~i~----v~~--~---~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASD---DQLTK----SAS--C---FHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEE---EEEEE----CSS--C---CCCEEEETTEEECCCCT
T ss_pred             cccccCCCcceEEEcCCCCE-EEEEccCCCCeEEEEEEchhh---ceEEE----CCC--c---eEEccCCCeEEEEEcCC
Confidence                 123456899999855 55544 3 467888  99877   34432    111  1   12334355566777789


Q ss_pred             CceEEEECCC----CCcceE----EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc--eeeEeeecc-----C
Q 016522          229 STARLWDTRV----ASRAVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQH-----G  293 (388)
Q Consensus       229 g~i~i~d~~~----~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-----~  293 (388)
                      |.+.+.|+..    ..+...    .+.....+.   . .+++..++..+. +.+.+.|+....  ....+....     .
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence            9999999876    112111    011112232   3 566666666666 899999986532  122111100     0


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEec-C--------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEcc-
Q 016522          294 ENEIPHVTSIAFSISGRLLFAGYS-N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-  362 (388)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-  362 (388)
                      .........++++|+++.++++.. +        +.+.++|+.+.+.+..+.    . ......++|+|||+ ++++.. 
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----v-g~~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----N-GHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----E-EEEECEEEECCSSSCEEEEEET
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----C-CCCcceEEECCCCCEEEEEccC
Confidence            000001122689999998887644 2        356799999999988873    2 23689999999998 456666 


Q ss_pred             CCCeEEEeccceee
Q 016522          363 WDTNLKVSLHYYIF  376 (388)
Q Consensus       363 ~dg~v~iw~~~~~~  376 (388)
                      .++.|.+++.....
T Consensus       335 ~~~~VsVID~~t~k  348 (368)
T 1mda_H          335 GTEVLDIYDAASDQ  348 (368)
T ss_dssp             TTTEEEEEESSSCE
T ss_pred             CCCeEEEEECCCCc
Confidence            59999999976533

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.52  E-value=5.7e-11  Score=102.89  Aligned_cols=262  Identities=12%  Similarity=0.013  Sum_probs=163.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      ++..++.++.++.|..+|..+++.................  .+..+++++.++.+..+|..+++       ........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~-------~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA-------VKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC-------EEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc-------EEEEEeCC
Confidence            3457888889999999999999988777655332111111  24578888889999999998765       22222221


Q ss_pred             ccce-----EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cC---e-EEEEeeCCCCcEEEEee
Q 016522          158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS  226 (388)
Q Consensus       158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~---i-~~~~~~~~~~~~l~~~~  226 (388)
                      ....     ...... +  ..++.++.++.|..+|..+++..............  ..   + .....   .+..+++++
T Consensus       173 ~~~~~~~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~  246 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALA  246 (376)
T ss_dssp             C-----CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEEC
T ss_pred             CCceeecCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEe
Confidence            1110     111222 2  35788888999999999999888776422100000  00   1 01111   235667777


Q ss_pred             CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .++.+..+|..++ +.+-...  ......+..  ++..++.++.++.|..+|..+++...........    .+..... 
T Consensus       247 ~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~-  316 (376)
T 3q7m_A          247 YNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR----LLTSPVL-  316 (376)
T ss_dssp             TTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS----CCCCCEE-
T ss_pred             cCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC----cccCCEE-
Confidence            8999999999877 4433332  223344443  4667888889999999999999887665421111    1222222 


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCCCCeEEEccCCCeEEEec
Q 016522          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                       .+..|++++.+|.|+.+|..+++.+....    .....+. ....  .+..|+.++.+|.|..|+
T Consensus       317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~----~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQK----VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -ETTEEEEECTTSEEEEEETTTCCEEEEEE----CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             -ECCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence             25688889899999999999999887763    2122222 1222  245788888999998875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.49  E-value=1.1e-11  Score=115.33  Aligned_cols=261  Identities=14%  Similarity=0.152  Sum_probs=164.6

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeC-C-ccEEEEEECC---CCCEEEEee------CCCcEEEEeCCCCCCCCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSP---TGQSVACGG------LDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~vw~~~~~~~~~~~  147 (388)
                      +..+++++.|+.|..+|..+|+.+..+... . .....+..+|   ++ .+++++      .+|.|..||..+++.    
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~----  195 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE----  195 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE----
Confidence            457888999999999999999998777653 1 1111111122   44 444443      368999999988662    


Q ss_pred             CceeEEec-------------------------------ccccceEEEEEEeCCCceEEEeeCCCe--------------
Q 016522          148 LPVSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQT--------------  182 (388)
Q Consensus       148 ~~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~--------------  182 (388)
                         ...+.                               ++......+++.|++ .+++.++.++.              
T Consensus       196 ---~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          196 ---AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             ---EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             ---EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCc
Confidence               21111                               011111256788875 56777777663              


Q ss_pred             -----EEEEecCCCceEEEeecccccC----CccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522          183 -----CVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGHE  250 (388)
Q Consensus       183 -----v~i~d~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  250 (388)
                           |..+|..+++....+.......    ............ ++   ..++.++.+|.++++|.+++ +.+.......
T Consensus       272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~  349 (689)
T 1yiq_A          272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVP  349 (689)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSC
T ss_pred             eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCC-CEeccccccc
Confidence                 9999999999988874210000    111222222221 33   37889999999999999887 4432111000


Q ss_pred             ---------------------------------------CCeeEEEEccCCCEEEEeeC---------------------
Q 016522          251 ---------------------------------------GDVNTVKFFPDGNRFGTGSD---------------------  270 (388)
Q Consensus       251 ---------------------------------------~~i~~~~~~~~~~~l~~~~~---------------------  270 (388)
                                                             ..-..++|+|+..++++...                     
T Consensus       350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~  429 (689)
T 1yiq_A          350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM  429 (689)
T ss_dssp             CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred             cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence                                                   00123788888888777532                     


Q ss_pred             ------------------------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          271 ------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       271 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                                              +|.|..||+.+++.+........      .....+...+.++++|+.||.++.||.
T Consensus       430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------FNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------ccCccceECCCEEEEECCCCcEEEEEC
Confidence                                    37899999999998877655321      222345567789999999999999999


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      .+++.+..+..   .+.....-+.|..+|+..+
T Consensus       504 ~tG~~lw~~~~---~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          504 DTGEKLWEQPA---ASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TTCCEEEEEEC---SSCCCSCCEEEEETTEEEE
T ss_pred             CCCccceeeeC---CCCcccCceEEEECCEEEE
Confidence            99999988742   2222223456667776443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.48  E-value=6.6e-10  Score=91.23  Aligned_cols=251  Identities=9%  Similarity=0.045  Sum_probs=156.9

Q ss_pred             CeEEEEeCCCcEEEEECCCCCee-----eEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEE
Q 016522           80 NRIVSASQDGRLIVWNALTSQKT-----HAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRM  153 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~  153 (388)
                      .+|+.+.. +.|+.+++......     ..+......+..++|++++..|+.+ ..++.|.+++.....       ....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~   73 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI   73 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence            45555553 47888887654321     1223333457899999976655554 456899999987632       1222


Q ss_pred             ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC--CCce
Q 016522          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTA  231 (388)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i  231 (388)
                      ..........+++.++++.++++-...+.|.++++.........     .........++++|.++.++++...  .+.|
T Consensus        74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I  148 (267)
T 1npe_A           74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI  148 (267)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred             EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence            22222466889999876666777777889999998754433322     1222467899999855555555433  4688


Q ss_pred             EEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          232 RLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       232 ~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      ..+++...  ....+ .........++++|++..|+.+ ...+.|..+|+......... ...     .....++..  +
T Consensus       149 ~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~~~-----~~P~gi~~d--~  218 (267)
T 1npe_A          149 ETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGL-----QYPFAVTSY--G  218 (267)
T ss_dssp             EEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECC-----CSEEEEEEE--T
T ss_pred             EEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-cCC-----CCceEEEEe--C
Confidence            88887643  22222 2223457899999987666554 45678999998754333222 211     124566654  4


Q ss_pred             CEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          310 RLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       310 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ..|+++. .++.|..+|..+++.+..+.   .+.......+++.|++.
T Consensus       219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          219 KNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEECSCC
T ss_pred             CEEEEEECCCCeEEEEeCCCCCceEEEc---cccccccceeeecCccC
Confidence            5555554 56799999999999888773   12222467888888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=1.4e-11  Score=114.30  Aligned_cols=263  Identities=10%  Similarity=0.082  Sum_probs=169.0

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-C----ccEEEEEECCCCCEEEEeeC------CCcEEEEeCCCCCCCCC
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLP-C----AWVMTCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~  146 (388)
                      ++..|++++.|+.|..+|..+|+.+..+... .    ..+..--.. .+..+++++.      +|.|+.+|..+++.   
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~---  202 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGER---  202 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE---
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcE---
Confidence            3567888899999999999999999888765 2    111110000 2445555543      68999999988662   


Q ss_pred             CCceeEEecc--------------------------------cccceEEEEEEeCCCceEEEeeCCC-------------
Q 016522          147 NLPVSRMLSG--------------------------------HKGYVSCCQYVPDEDTHLITSSGDQ-------------  181 (388)
Q Consensus       147 ~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~~l~~~~~dg-------------  181 (388)
                          ...+..                                .......+++.+++ .+++.+..++             
T Consensus       203 ----~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~g  277 (677)
T 1kb0_A          203 ----KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGG  277 (677)
T ss_dssp             ----EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCC
T ss_pred             ----EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCC
Confidence                221111                                11112356788876 4566666553             


Q ss_pred             ------eEEEEecCCCceEEEeeccccc----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522          182 ------TCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       182 ------~v~i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  248 (388)
                            .|..+|..+++....+......    ........+.... ++   ..++.++.+|.++++|..++ +.+.....
T Consensus       278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~  355 (677)
T 1kb0_A          278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNF  355 (677)
T ss_dssp             CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEES
T ss_pred             CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCC-CEeccccc
Confidence                  5999999999998887431100    0011222223322 44   68899999999999999988 44433321


Q ss_pred             cc-----------CCe------------------------eEEEEccCCCEEEEeeCC----------------------
Q 016522          249 HE-----------GDV------------------------NTVKFFPDGNRFGTGSDD----------------------  271 (388)
Q Consensus       249 ~~-----------~~i------------------------~~~~~~~~~~~l~~~~~d----------------------  271 (388)
                      ..           .++                        ..++++|+..++++...+                      
T Consensus       356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~  435 (677)
T 1kb0_A          356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ  435 (677)
T ss_dssp             SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred             cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence            10           001                        157889988888875432                      


Q ss_pred             ---------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522          272 ---------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  330 (388)
Q Consensus       272 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (388)
                                           |.|..||+.+++.+.......      +.....+...+..+++++.||.+++||..+++
T Consensus       436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC------CCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                                 789999999999887775432      13334456678888999999999999999999


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCT  360 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  360 (388)
                      .+..+..   .+.....-+.|..+|+.+++
T Consensus       510 ~lw~~~~---~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          510 KLWEAPT---GTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred             eeeeeeC---CCCcccCCEEEEeCCEEEEE
Confidence            9988852   22223344556677764443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=1.5e-11  Score=115.10  Aligned_cols=238  Identities=14%  Similarity=0.092  Sum_probs=150.0

Q ss_pred             CccEEEEEECCCCCEEEEee-----CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---
Q 016522          109 CAWVMTCAFSPTGQSVACGG-----LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---  180 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  180 (388)
                      ...+..++|||||++|+.+.     ....|++||+.++.       .... ..+......++|+ |++ .|+.++.+   
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~~-~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~  197 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLET-PLKDVKFSGISWL-GNE-GFFYSSYDKPD  197 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEEE-EEEEEESCCCEEE-TTT-EEEEEESSCCC
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCcc-ccCCceeccEEEe-CCC-EEEEEEecCcc
Confidence            34688899999999988543     33579999999865       1111 1111113567899 875 45555555   


Q ss_pred             ----------CeEEEEecCCCce--EEEeecccccC-CccCeEEEEeeCCCCcEEEE-eeC---CCceEEEECCCCCcce
Q 016522          181 ----------QTCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFVS-GSC---DSTARLWDTRVASRAV  243 (388)
Q Consensus       181 ----------g~v~i~d~~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~~~  243 (388)
                                ..|++|++.++..  ...+..   .. +......+.++| ++++++. ...   +..|+++|+..+....
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence                      3499999987653  333311   12 344578899999 5665543 332   3589999998764456


Q ss_pred             EEEecccCCeeEEEEccCCCEEEEee-CC---CcEEEEECCCCce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          244 RTFHGHEGDVNTVKFFPDGNRFGTGS-DD---GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      ..+..+....... +++++..|+..+ .+   +.|..+|+.++..  ...+.....     .+.  .|++++++|+....
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-----QVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-----SCE--EEEEETTEEEEEEE
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-----CEE--EEEEECCEEEEEEE
Confidence            6676666665555 666666665444 33   5799999987654  223322221     133  78899998777665


Q ss_pred             CC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC----CeEEEecc
Q 016522          318 NG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKVSLH  372 (388)
Q Consensus       318 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~  372 (388)
                      ++   .|++||+..+.. ..+.   ....+.+..+.+++++..|+....+    +.+..|+.
T Consensus       346 ~~g~~~l~~~d~~g~~~-~~l~---~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          346 VDATARVEQFDYEGKRV-REVA---LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ETTEEEEEEECTTSCEE-EEEC---CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             ECCeeEEEEEECCCCee-EEee---cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            44   689999875543 3332   2344567788888888777655444    77777765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=1.5e-11  Score=114.10  Aligned_cols=278  Identities=12%  Similarity=0.074  Sum_probs=178.8

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-----------EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      +..|++++.++.|..+|..+|+.+..+......           ...+++  .+..+++++.|+.+..+|..+++     
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~-----  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK-----  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence            457777888899999999999998877654321           011222  46778888999999999998866     


Q ss_pred             CceeEEeccc-c----cceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeeccccc-------------
Q 016522          148 LPVSRMLSGH-K----GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS-------------  203 (388)
Q Consensus       148 ~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~-------------  203 (388)
                        .......+ .    ..+..--...+ + .++.++.      +|.|+.+|..+++.+..+......             
T Consensus       150 --~~W~~~~~~~~~~~~~~~~~p~v~~-~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g  225 (677)
T 1kb0_A          150 --EVWHQNTFEGQKGSLTITGAPRVFK-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA  225 (677)
T ss_dssp             --EEEEEETTTTCCSSCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             --EEeeecCCcCcCcCcccccCcEEEC-C-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence              33333322 1    11211111122 3 3444442      799999999999998877432111             


Q ss_pred             --------------CCccCeEEEEeeCCCCcEEEEeeCCC-------------------ceEEEECCCCCcceEEEec--
Q 016522          204 --------------GHTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--  248 (388)
Q Consensus       204 --------------~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--  248 (388)
                                    ........++++| +..+++.++.++                   .|..+|.+++ +.+-.++.  
T Consensus       226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~  303 (677)
T 1kb0_A          226 ARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETP  303 (677)
T ss_dssp             HTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESST
T ss_pred             cccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCC
Confidence                          0001113567787 566777666553                   4899999888 44444332  


Q ss_pred             cc-------CCeeEEEEccCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCC------CCCCC-------------
Q 016522          249 HE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------NEIPH-------------  299 (388)
Q Consensus       249 ~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~-------------  299 (388)
                      |.       ....-+....+|   ..++.++.+|.++++|..+++.+.........      ....+             
T Consensus       304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred             CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence            21       122223333467   68999999999999999999988765432100      00000             


Q ss_pred             -----------eEEEEecCCCCEEEEEecC-------------------------------------------CcEEEEE
Q 016522          300 -----------VTSIAFSISGRLLFAGYSN-------------------------------------------GDCYVWD  325 (388)
Q Consensus       300 -----------i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d  325 (388)
                                 -..++|+|++.++++...+                                           |.|..||
T Consensus       384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence                       1256889998888776432                                           6799999


Q ss_pred             cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +.+++.+....     +..++....+..++.+++.++.||.+++|+...
T Consensus       464 ~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          464 PVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             TTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence            99999988873     333444555666788899999999999998643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.46  E-value=2.2e-10  Score=99.20  Aligned_cols=267  Identities=12%  Similarity=0.042  Sum_probs=166.1

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC---------ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .+..+++++.++.|..+|..+++.+.......         ..+.+ ....++..+++++.++.+..+|..+++      
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~------  124 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT------  124 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC------
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC------
Confidence            35688888889999999999999887766532         22222 122246678888899999999998765      


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                       ................. .+  ..++.++.++.|..+|..+++.......................   +..+++++.+
T Consensus       125 -~~W~~~~~~~~~~~p~~-~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~  197 (376)
T 3q7m_A          125 -VAWQTKVAGEALSRPVV-SD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDN  197 (376)
T ss_dssp             -EEEEEECSSCCCSCCEE-ET--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTT
T ss_pred             -EEEEEeCCCceEcCCEE-EC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCC
Confidence             22222222111111122 22  36788889999999999999988776321100000000112222   3467778889


Q ss_pred             CceEEEECCCCCcceEEEecccC-C---ee---EEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522          229 STARLWDTRVASRAVRTFHGHEG-D---VN---TVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  299 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~-~---i~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  299 (388)
                      +.+..+|..++ +..-....... .   +.   .+...|  .+..++.++.++.+..+|..+++........       .
T Consensus       198 g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~  269 (376)
T 3q7m_A          198 GRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------S  269 (376)
T ss_dssp             TEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------C
T ss_pred             CEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------C
Confidence            99999999877 44333321110 0   00   011111  3567888888999999999999887655321       1


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ...+..  ++..+++++.++.|..+|..+++.......   .....+.....  .+..|+.++.+|.|.+++..
T Consensus       270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence            334443  466888888999999999999998876631   11122222233  24578888889999988853

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.45  E-value=4.6e-10  Score=96.08  Aligned_cols=233  Identities=14%  Similarity=0.122  Sum_probs=149.4

Q ss_pred             CCCCEEEE-eeCCCcEEEEeCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCC------CeEE
Q 016522          119 PTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGD------QTCV  184 (388)
Q Consensus       119 ~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~  184 (388)
                      +++++|++ +..++.|.|+|+.+..   ......+.+.       .....-..+...|+|  +++++..+      |.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence            77777766 5567899999997532   1223444442       111234556778886  66665555      7899


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------------------CCCceEEEECCCCCcceEE
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT  245 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~  245 (388)
                      ++|..+.+.+..+...  .....--..+-|+| +.+.+++..                   .+.+|.+||+.+. +.+.+
T Consensus       168 vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t  243 (462)
T 2ece_A          168 MLDHYSFEPLGKWEID--RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS  243 (462)
T ss_dssp             EECTTTCCEEEECCSB--CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred             EEECCCCeEEEEEccC--CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence            9999999999888421  11112234577898 777887774                   3689999999876 66666


Q ss_pred             Eecc--cCCeeEEEE--ccCCCEEEEeeC------CCcEEEEECCCCcee--eEeeeccC--CC-----------CCCCe
Q 016522          246 FHGH--EGDVNTVKF--FPDGNRFGTGSD------DGTCRLFDIRTGHQL--QVYYQQHG--EN-----------EIPHV  300 (388)
Q Consensus       246 ~~~~--~~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~--~~~~~~~~--~~-----------~~~~i  300 (388)
                      +..-  ......+.|  +|+++++++++.      +++|.+|....+...  +.+.....  ..           .....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            6542  123445555  999999888774      568887766543211  11100000  00           01347


Q ss_pred             EEEEecCCCCEEEEEec-CCcEEEEEccc---ceEEeeccCCCCC------c------CCCeeEEEECCCCCeEEEcc
Q 016522          301 TSIAFSISGRLLFAGYS-NGDCYVWDTLL---AKVVLNLGSLQNS------H------EGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~------~------~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ..+.+++||++|+++.. .+.|.+||+..   .+.+..+..  .+      |      .+....++++|||++|+++.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            88999999999988876 57999999852   345544421  10      0      12368899999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=6.9e-11  Score=109.96  Aligned_cols=278  Identities=12%  Similarity=0.082  Sum_probs=174.5

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------E-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      +..+++++.++.|..+|..+|+.+..+......          + ..++.  .+..+++++.|+.+..+|..+++     
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~-----  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ-----  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC-----
Confidence            557888888999999999999998887643321          0 11111  35678888899999999998866     


Q ss_pred             CceeEEecc--cc---cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeeccccc-------------
Q 016522          148 LPVSRMLSG--HK---GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS-------------  203 (388)
Q Consensus       148 ~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~-------------  203 (388)
                        .......  +.   ..+.+--...+ +. ++.++      .+|.|..||..+++.+..+......             
T Consensus       143 --~~W~~~~~~~~~~~~~~~~sP~v~~-g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          143 --RAWSVDTRADHKRSYTITGAPRVVN-GK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             --EEEEEECCSCTTSCCBCCSCCEEET-TE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             --EeeeecCcCCCCCCccccCCcEEEC-CE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence              2222221  10   11111111123 23 44443      3789999999999998877421000             


Q ss_pred             -------------CCccCeEEEEeeCCCCcEEEEeeCCCc-------------------eEEEECCCCCcceEEEec--c
Q 016522          204 -------------GHTADVLSVSISGSNSRMFVSGSCDST-------------------ARLWDTRVASRAVRTFHG--H  249 (388)
Q Consensus       204 -------------~~~~~i~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~  249 (388)
                                   ........++++| +..+++.++.++.                   |..+|.+++ +.+-.+..  |
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~  296 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPG  296 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred             ccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCc
Confidence                         0001112567787 6677777777653                   999999988 44444432  2


Q ss_pred             c-------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccC-----------------------CCC
Q 016522          250 E-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-----------------------ENE  296 (388)
Q Consensus       250 ~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------------~~~  296 (388)
                      .       .++.......+|+   .++.++.+|.++++|..+++.+........                       ...
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence            1       1122222223554   788999999999999999998744322110                       000


Q ss_pred             -----------CCCeEEEEecCCCCEEEEEec---------------------------------------------CCc
Q 016522          297 -----------IPHVTSIAFSISGRLLFAGYS---------------------------------------------NGD  320 (388)
Q Consensus       297 -----------~~~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~  320 (388)
                                 ......++|+|+..++++...                                             +|.
T Consensus       377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~  456 (689)
T 1yiq_A          377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK  456 (689)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred             CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence                       001123688898887777532                                             377


Q ss_pred             EEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      |+.||+.+++.+....    .+ .++..-.+...+.+++.|+.||.|+.|+...
T Consensus       457 l~A~D~~tG~~~W~~~----~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          457 LIAWDPVKQQAAWEVP----YV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             EEEEETTTTEEEEEEE----ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             EEEEECCCCCeEeEcc----CC-CCccCccceECCCEEEEECCCCcEEEEECCC
Confidence            9999999999988873    22 2333334556778999999999999998653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.43  E-value=5.9e-12  Score=106.96  Aligned_cols=261  Identities=15%  Similarity=0.092  Sum_probs=163.2

Q ss_pred             eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      .+.....++ .|..++.++.|..|| .+++.......+...+.++...+++. +.+++.+  +..+|. ++..       
T Consensus        23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-------   89 (330)
T 3hxj_A           23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-------   89 (330)
T ss_dssp             CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-------
T ss_pred             cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-------
Confidence            445555555 566777888999999 88887766665555567777777776 4444444  777875 3221       


Q ss_pred             eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522          151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  230 (388)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  230 (388)
                      ................. +  ..+..++.++.|..+|.. ++......     .....+.++...+ ++. +..++.++.
T Consensus        90 ~~~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~~~-~g~-l~vgt~~~~  158 (330)
T 3hxj_A           90 KWRFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFK-----TKKAIYATPIVSE-DGT-IYVGSNDNY  158 (330)
T ss_dssp             GGGSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEECT-TSC-EEEECTTSE
T ss_pred             EEEEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEc-----CCCceeeeeEEcC-CCE-EEEEcCCCE
Confidence            11111111112222233 3  357788889999999998 76665552     2333455555554 444 556777899


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  310 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (388)
                      |..+|.. + .....+......+.++...+++.+++. +  +.|..+| .+++.........     ..+.++..+++|.
T Consensus       159 l~~~d~~-g-~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~-----~~~~~~~~~~~g~  227 (330)
T 3hxj_A          159 LYAINPD-G-TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGY-----WTVTRPAISEDGT  227 (330)
T ss_dssp             EEEECTT-S-CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSS-----CCCSCCEECTTSC
T ss_pred             EEEECCC-C-CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCC-----cceeceEECCCCe
Confidence            9999988 5 555555555556777888777775544 4  7899999 6776665553321     2367778887775


Q ss_pred             EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                       |.+++.++.+..+|. +++.+..+.    .....+..+.+.+++ .|..++.+|.|..++..
T Consensus       228 -l~v~t~~~gl~~~~~-~g~~~~~~~----~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          228 -IYVTSLDGHLYAINP-DGTEKWRFK----TGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             -EEEEETTTEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred             -EEEEcCCCeEEEECC-CCCEeEEee----CCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence             555667788988884 555555542    223334456666566 46677778888888753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=2.8e-13  Score=116.65  Aligned_cols=258  Identities=13%  Similarity=0.046  Sum_probs=139.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      ++..+++++.||.|+.||..+|+.+..+..  ..+.+..+..++..+++++.||.++.||..+++.       ......+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------LTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-------SEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-------eeeeecc
Confidence            567899999999999999999999988876  4455555666788888888999999999977552       1222211


Q ss_pred             cc-ceE-EEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEE
Q 016522          158 KG-YVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  235 (388)
Q Consensus       158 ~~-~v~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d  235 (388)
                      .. .+. ...+..  +..+++++.|+.|+.||..+++....+.     .+.    ...++| .+..+++++.++.|+.||
T Consensus        79 ~~~~~~~sp~~~~--~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p-~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           79 IPELVQASPCRSS--DGILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSP-STSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCC
T ss_pred             CccccccCceEec--CCEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccc-cCCEEEEEecCCEEEEEE
Confidence            11 110 001112  2457888899999999999998887762     221    133455 667888889999999999


Q ss_pred             CCCCCcceEEEecccCCeeEEEEccCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          236 TRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      .+++ +.+-.+..+.  .....+.++.   ..+++++.||.|..||..+++.+.......     ..+....++++|...
T Consensus       147 ~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----pv~~~~~~~~dg~~~  218 (369)
T 2hz6_A          147 TKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS-----PVVAFYVWQREGLRK  218 (369)
T ss_dssp             SSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS-----CEEEEEECTTSSCEE
T ss_pred             CCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC-----ceEEEEEecCCceEe
Confidence            9887 4433332211  1223333322   567788899999999999998877664321     113334555666432


Q ss_pred             ----EEEecCCcEEEEEcccce----EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          313 ----FAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       313 ----~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                          +.+  ++.++.+|..+++    .+.....     .+.+.....  .+..|+.++.||.+..+...
T Consensus       219 v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~-----~~~~~sp~~--~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          219 VMHINVA--VETLRYLTFMSGEVGRITKWKYPF-----PKETEAKSK--LTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             ECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCC-----CCHHHHHHH--SEEEECBEECSSCEECCEEE
T ss_pred             ccceeec--ccceeeeehhcCCcccceeeeecc-----Ccccccccc--ccceEEEecccCCEEecCcc
Confidence                122  3456677776666    4433311     111110001  23456677777777766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=3e-13  Score=116.50  Aligned_cols=204  Identities=11%  Similarity=0.004  Sum_probs=115.0

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      ++..+++++.||.|+.||..+++       ....+..  +.+.+..+..++ ..+++++.||.|+.||..+++....+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            57889999999999999998866       3344433  344444455554 5677788999999999999887666521


Q ss_pred             ccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          200 EFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       200 ~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      ..    ...+. +..+.  .+..+++++.++.++.||..++ +.+..+..+.    ...++|++..+++++.|+.|+.||
T Consensus        78 ~~----~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           78 TI----PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             CH----HHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred             cC----ccccccCceEe--cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            10    11110 00111  3356778888999999999988 4544444332    244567888999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCC
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD  354 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~  354 (388)
                      .++++.+..+....       ....+++++.   ..+++++.+|.|+.||..+++.+....     ...++. ...++++
T Consensus       147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d  214 (369)
T 2hz6_A          147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE  214 (369)
T ss_dssp             SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred             CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence            99998776654311       1222333332   467778899999999999999888762     234443 3445555


Q ss_pred             CC
Q 016522          355 GS  356 (388)
Q Consensus       355 ~~  356 (388)
                      |.
T Consensus       215 g~  216 (369)
T 2hz6_A          215 GL  216 (369)
T ss_dssp             SC
T ss_pred             ce
Confidence            54

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=2.7e-11  Score=103.45  Aligned_cols=238  Identities=13%  Similarity=0.074  Sum_probs=150.8

Q ss_pred             ccEEEEEECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCce-eEEecccccceEEEEEEeCCCceEEEeeC-----CC
Q 016522          110 AWVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQ  181 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg  181 (388)
                      ..+..++++++|+.+++..  .++.++||.+.++...  .++. ......+...+..+++.+++ +++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            6689999999999988853  2343555555432100  0000 00112355678999999986 44444333     57


Q ss_pred             eEEEEecCCCceEEEeecc-cccCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCee-EE
Q 016522          182 TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVN-TV  256 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~  256 (388)
                      .|.+||+.+++....+... ....+...+..+++++.++..+++..   .++.|.+||+.++ +..+.+.+|..... ..
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence            8999999998877666421 11123345789999985566666655   6789999999866 55555544422111 13


Q ss_pred             EEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccce-----
Q 016522          257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAK-----  330 (388)
Q Consensus       257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~-----  330 (388)
                      .+.++|..+.+.+.+|.++.|..                   .+..++|+|+|+.|+++..++ .++.++.....     
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             ceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            45557777777777777765531                   267899999999888887766 55555532100     


Q ss_pred             ---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          331 ---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       331 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                         ....+.  ..++.+....++++++|.++++...++.|.+|+.
T Consensus       234 ~~~~~~~~~--~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          234 DAELGSKIE--RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHHHHTTCE--EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             hhhhhcceE--ecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence               000000  0123345678999999999999888999999998

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.33  E-value=1.8e-10  Score=102.01  Aligned_cols=260  Identities=11%  Similarity=0.010  Sum_probs=164.8

Q ss_pred             EEEEeCCCcEEEEECCCCCeeeEeeeCC---------------------------------------ccEEEEEECC---
Q 016522           82 IVSASQDGRLIVWNALTSQKTHAIKLPC---------------------------------------AWVMTCAFSP---  119 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~---  119 (388)
                      +.+|+..|.|+|+-+.+++.+..+....                                       +.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            5688889999999888877766654321                                       1112234444   


Q ss_pred             --CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEE-E-eCCCceEEEee---------------
Q 016522          120 --TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQY-V-PDEDTHLITSS---------------  178 (388)
Q Consensus       120 --~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~---------------  178 (388)
                        ||+++++... ++.|.+.|+.+.+       ....+.- .......+++ . |+++ ++++++               
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~-------~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTC
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCce-------EeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCccccc
Confidence              7888777665 5579999998844       3332221 1234667777 4 7774 455553               


Q ss_pred             ---CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--------------------------
Q 016522          179 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------------------------  229 (388)
Q Consensus       179 ---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------------------  229 (388)
                         .++.+.+.|..+.+....+..    +  .....++++| +++++++.+.+.                          
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~V----g--g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLV----S--GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEE----S--SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             ccccCceEEEEECCCCeEEEEEEe----C--CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence               346899999999888777632    1  1345567787 666666666442                          


Q ss_pred             ------------ceEEEECCC--CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCc-----------
Q 016522          230 ------------TARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH-----------  283 (388)
Q Consensus       230 ------------~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-----------  283 (388)
                                  .|.+.|.++  ....+..+.. .....++.++|||+++++++ .+.+|.++|+.+.+           
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                        467777776  3121334432 34567899999999877665 67899999998653           


Q ss_pred             -eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc----------ceEEeeccCCCC-CcCCCeeEEEE
Q 016522          284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQN-SHEGRITCLGL  351 (388)
Q Consensus       284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~-~~~~~v~~~~~  351 (388)
                       ......      .......++|+|+|....+...|+.|.+||+..          .+.+..+..-.. +|...-..+.+
T Consensus       322 ~v~~~v~------vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          322 AVVAEPE------LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             GEEECCB------CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred             ceEEEcC------CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence             122221      223478999999994334455689999999987          456666632111 22222233456


Q ss_pred             CCCCCeEEEccC
Q 016522          352 SADGSALCTGSW  363 (388)
Q Consensus       352 ~~~~~~l~s~~~  363 (388)
                      +|||++|+++..
T Consensus       396 ~~DGk~l~~~Nk  407 (595)
T 1fwx_A          396 DATNDWLVCLSK  407 (595)
T ss_dssp             TCCSSEEEEEES
T ss_pred             CCCCCEEEEcCC
Confidence            899999998753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=1.8e-09  Score=85.73  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=137.2

Q ss_pred             ceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      ....+.|+ ++ .++.+.+.+|  .|+++|+.+++.......    ........++..  ++.++++.-.++.+.+||..
T Consensus        44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence            34678887 44 6777777766  899999999999888742    111112334554  45666666678999999998


Q ss_pred             CCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      +. +.+.++.... .-..++  ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....
T Consensus       116 t~-~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          116 NL-RQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             TC-CEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cC-cEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            87 6777776422 223344  57777877777889999999999888887654322222345667776 6765555556


Q ss_pred             CCcEEEEEcccceEEeeccCC--C------CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522          318 NGDCYVWDTLLAKVVLNLGSL--Q------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP  380 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~--~------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~  380 (388)
                      ++.|.+.|..+++.+..+...  .      .......+.|||+|+++.|++.+.     .|...|...+.+
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK-----~Wp~~~ev~~~~  256 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK-----LWPKVFEITLTQ  256 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET-----TCSEEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC-----CCCceEEEEEec
Confidence            789999999999998877531  0      111246799999998877777663     355555444433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.28  E-value=1.2e-08  Score=87.43  Aligned_cols=227  Identities=12%  Similarity=0.039  Sum_probs=141.8

Q ss_pred             CCCCeEEE-EeCCCcEEEEECCCC----CeeeEee-------eCCccEEEEEECCCCCEEEEeeCC------CcEEEEeC
Q 016522           77 SERNRIVS-ASQDGRLIVWNALTS----QKTHAIK-------LPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNL  138 (388)
Q Consensus        77 ~~~~~l~t-~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~  138 (388)
                      +++++|+. +..++.|.++|+.+.    +...++.       ........+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77776654 557789999998654    4444442       122346677889999 66665544      78999999


Q ss_pred             CCCCCCCCCCceeEEecccc---cceEEEEEEeCCCceEEEee-------------------CCCeEEEEecCCCceEEE
Q 016522          139 NSPTDKDGNLPVSRMLSGHK---GYVSCCQYVPDEDTHLITSS-------------------GDQTCVLWDITTGLRTSV  196 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~-------------------~dg~v~i~d~~~~~~~~~  196 (388)
                      .+.+       +........   ..-..+-|+|+++ .++++.                   .+.+|.+||+.+++....
T Consensus       172 ~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          172 YSFE-------PLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             TTCC-------EEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CCCe-------EEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            8754       444443211   1233577899874 666663                   468999999999877777


Q ss_pred             eecccccCCccCeEEEEe--eCCCCcEEEEee------CCCceEEEECCCCC-cceEEE--ecc----------------
Q 016522          197 FGGEFQSGHTADVLSVSI--SGSNSRMFVSGS------CDSTARLWDTRVAS-RAVRTF--HGH----------------  249 (388)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~-~~~~~~--~~~----------------  249 (388)
                      +...   ........+.|  +| +++++.+++      .+++|.+|....+. ...+.+  ...                
T Consensus       244 I~vg---~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLG---EENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESC---TTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecC---CCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            6421   11233445545  88 555555554      56788877654321 011111  110                


Q ss_pred             cCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC---ceeeEeeeccC---------CCCCCCeEEEEecCCCCEEEEEe
Q 016522          250 EGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG---HQLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      ......|.++|||++|+++.. .+.|.+||+...   +.+..+.....         .........++++|||++|+++.
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            234678999999999887764 678999998633   33333333210         00011357899999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.27  E-value=2.7e-08  Score=81.54  Aligned_cols=224  Identities=8%  Similarity=0.014  Sum_probs=140.3

Q ss_pred             CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~  145 (388)
                      ..+.+++|++++..|+ +-..++.|..++.........+.........+++++++..++.+ ...+.|.+++++...   
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---
Confidence            3578999999765555 44567899999987655433333333568999999976555544 456789999987532   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  223 (388)
                          ..............+++.|+++.++++...  .+.|..+++.........     .........+++++.++.+++
T Consensus       113 ----~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-----~~~~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          113 ----RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             ----CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEEEEETTTTEEEE
T ss_pred             ----EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-----ECCCCCCcEEEEcCCCCEEEE
Confidence                111122222456789999976555555433  468888887644322222     122346789999985566667


Q ss_pred             EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE
Q 016522          224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI  303 (388)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  303 (388)
                      +....+.|..+|+... ........ ......++.. .+.++++....+.|..+|..+++....+.....    .....+
T Consensus       184 ~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi  256 (267)
T 1npe_A          184 VDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGI  256 (267)
T ss_dssp             EETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCE
T ss_pred             EECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----ccccee
Confidence            7777789999998743 22222222 2334567664 344444444568999999998888777654221    124667


Q ss_pred             EecCCCC
Q 016522          304 AFSISGR  310 (388)
Q Consensus       304 ~~~~~~~  310 (388)
                      ++.|++.
T Consensus       257 ~~~~~~~  263 (267)
T 1npe_A          257 TIALSQC  263 (267)
T ss_dssp             EEECSCC
T ss_pred             eecCccC
Confidence            7777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=3.7e-09  Score=85.03  Aligned_cols=203  Identities=8%  Similarity=0.039  Sum_probs=138.1

Q ss_pred             ceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522          160 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  237 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~  237 (388)
                      ....+.|++++ .++++.+.  ++.|.++|+.+++....+..    +.......+++.  ++.++++.-.++.+.++|..
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            35789999875 55555443  67999999999998888742    222233356665  44666777778999999998


Q ss_pred             CCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      +. +.+..+.....  ....+++|++.++++..++.|.++|..+.+....+...........+..+.|. +|...+....
T Consensus        95 t~-~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A           95 TL-SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             TT-EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CC-cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            77 66666653211  22345567887777778899999999998888877654322222236788888 6755454445


Q ss_pred             CCcEEEEEcccceEEeeccCCC-------C--CcCCCeeEEEECCCCCe-EEEccCCCeEEEeccc
Q 016522          318 NGDCYVWDTLLAKVVLNLGSLQ-------N--SHEGRITCLGLSADGSA-LCTGSWDTNLKVSLHY  373 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~  373 (388)
                      ++.|.+.|..+++.+..+....       .  ......+.|+|+|+++. ++++...+.+.+-...
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            7899999999999888874210       0  01135689999998764 4555567777666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.22  E-value=4.9e-09  Score=83.20  Aligned_cols=188  Identities=7%  Similarity=0.021  Sum_probs=132.6

Q ss_pred             eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC
Q 016522          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (388)
                      ...+.|..  +.++.+.+.+|.|+++|+.+++..... .   .. ......+++.  ++.++++.-.++.+.+||..+. 
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl-  126 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R---LG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP-  126 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E---CT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT-
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C---CC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcC-
Confidence            46777763  577888889999999999999887776 1   11 1122335554  4567777778899999999987 


Q ss_pred             cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc
Q 016522          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  320 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (388)
                      +.+.++... ..-..++  ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....+..
T Consensus       127 ~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          127 QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            677777642 2223444  56888888878899999999999988887664433333346778877 6765555546779


Q ss_pred             EEEEEcccceEEeeccCC---------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522          321 CYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       321 i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      |.+.|..+++.+..+...         ........+.|||+|+++.|++.+
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999999999998877531         111234679999999766665554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=2.4e-08  Score=80.39  Aligned_cols=210  Identities=11%  Similarity=0.094  Sum_probs=136.9

Q ss_pred             eeeEeeeCC-ccEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEE
Q 016522          101 KTHAIKLPC-AWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus       101 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~  176 (388)
                      .+.++.... .....++|++++.++++.+.  ++.|.++|+.+++       ....+.-.. .....+++.  ++.+.++
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~fgeGi~~~--g~~lyv~   81 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYFGEGLTLL--NEKLYQV   81 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcceEEEEEe--CCEEEEE
Confidence            445554333 24689999998765555543  5799999999866       333332111 122334454  4566677


Q ss_pred             eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----C
Q 016522          177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----G  251 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~  251 (388)
                      .-.++.+.++|..+.+.+..+..    + ...-..++  +++..+++ +..++.|.++|..+. +....+.-..     .
T Consensus        82 t~~~~~v~viD~~t~~v~~~i~~----g-~~~g~glt--~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKNFTH----Q-MKDGWGLA--TDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEEC----C-SSSCCEEE--ECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECC
T ss_pred             EecCCEEEEEECCCCcEEEEEEC----C-CCCeEEEE--ECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccc
Confidence            77889999999999998888742    2 12223344  43444554 456889999999876 5555544221     1


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEE-EEecCCcEE
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLF-AGYSNGDCY  322 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~  322 (388)
                      .++.+.|. ++...+....++.|.+.|..+++....+....        ..........++|+|+++.++ ++...+.|+
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            36678888 67655555568899999999999988886531        011123468999999987555 455677899


Q ss_pred             EEEcccc
Q 016522          323 VWDTLLA  329 (388)
Q Consensus       323 i~d~~~~  329 (388)
                      +.++...
T Consensus       232 ~i~l~~~  238 (266)
T 2iwa_A          232 EIKLHLV  238 (266)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            8887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.21  E-value=2.9e-07  Score=76.97  Aligned_cols=247  Identities=11%  Similarity=0.048  Sum_probs=145.4

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VC  133 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i  133 (388)
                      ..+.+..|... .....++|+++++++++-..++.|..||... +....+. ....+..+++.++|+++++.....  .|
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            34555666543 4678999999998777776889999999764 4433333 335688999999999666554332  36


Q ss_pred             EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecc----cccCCccC
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE----FQSGHTAD  208 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~----~~~~~~~~  208 (388)
                      ..++..++.     ........ .......++..+. ...+++-..++.|..+|..++.. +......    .....-..
T Consensus        98 ~~~d~~~g~-----~~~~~~~~-~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           98 VSLVKSDGT-----VETLLTLP-DAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEECTTSC-----EEEEEECT-TCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEcCCCCe-----EEEEEeCC-CccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            666655533     11111111 1122233444443 34455555688999999876532 2111110    00111123


Q ss_pred             eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522          209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (388)
                      ...+  +++++.++++-...+.|..||+.....  ....+. .......++++++|+++++....+.|.++|.. ++...
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4555  663445666666788999999874211  112221 12346779999999987777778899999975 54432


Q ss_pred             EeeeccCCCCCCCeEEEEec---CCCCEEEEEecCC
Q 016522          287 VYYQQHGENEIPHVTSIAFS---ISGRLLFAGYSNG  319 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg  319 (388)
                      ......   .....++++|.   |+++.|++++..+
T Consensus       247 ~~~~~~---~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQ---GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGG---TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             Eeeccc---ccCCceEEEEecccCCCCEEEEECCCC
Confidence            211111   12347999998   8888777766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.20  E-value=8.1e-10  Score=97.93  Aligned_cols=239  Identities=11%  Similarity=0.041  Sum_probs=150.8

Q ss_pred             CCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEE-C-CCCCEEEEee------------------CCCcEE
Q 016522           77 SERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAF-S-PTGQSVACGG------------------LDSVCS  134 (388)
Q Consensus        77 ~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~  134 (388)
                      +||+++..... ++.|.+.|+.+.+....+.... ..+..+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37777766554 5579999999999888665543 45888888 5 9999999884                  345788


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC----------------------------------
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----------------------------------  180 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------------------  180 (388)
                      +.|.++.+       ....+.-.. ....++++|+|+..++++...                                  
T Consensus       179 vID~~t~~-------v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          179 AVDADKWE-------VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEETTTTE-------EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             EEECCCCe-------EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            99988643       333333211 234567888874433333222                                  


Q ss_pred             ---CeEEEEecCC--Cce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------ce
Q 016522          181 ---QTCVLWDITT--GLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AV  243 (388)
Q Consensus       181 ---g~v~i~d~~~--~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~  243 (388)
                         +.|.+.|..+  ++. +..+      .......++.++|++...++++..+.+|.++|+.+...           ..
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~I------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYI------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEE------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             eEECcEEEEeCcccCCceeEEEE------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence               2366777766  333 3333      12345678899995445566666788999999985411           12


Q ss_pred             EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC----------CceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  313 (388)
                      .... -......++|+|+|...++.-.|++|.+||+.+          .+.+..+.....+.+...-..+.++|||++|+
T Consensus       325 ~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          325 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             EEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            2222 234578899999995445666899999999977          44455554433221111112335689999999


Q ss_pred             EEecC--CcE-----------EEEEcccce
Q 016522          314 AGYSN--GDC-----------YVWDTLLAK  330 (388)
Q Consensus       314 ~~~~d--g~i-----------~i~d~~~~~  330 (388)
                      +...-  .++           .++|+..++
T Consensus       404 ~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          404 CLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            87542  233           889986544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.20  E-value=1.3e-08  Score=80.18  Aligned_cols=204  Identities=13%  Similarity=0.076  Sum_probs=138.1

Q ss_pred             cceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      .....+.|++  +.++.+.+.+|  .|+.+|+.+++.......    .....-..++..  ++.++...-.++.+.+||.
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            3456788876  46666766654  899999999999888732    111122334444  5567777778899999999


Q ss_pred             CCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .+. +.+.++.... .-..++  +++..|+.+..++.|.++|..+.+....+...........++.+.+. +|+..+...
T Consensus        93 ~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           93 ATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             TTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            887 6777776432 224444  46777777777899999999999888887664332222346677765 666555555


Q ss_pred             cCCcEEEEEcccceEEeeccCCC---------CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQ---------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP  380 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~  380 (388)
                      .+..|.+.|..+++.+..+....         .......+.||++|+++.|++.+.     .|...|...+.|
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK-----~wp~~~~v~~~~  235 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK-----RWPMLYEIRLTP  235 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET-----TCSEEEEEEECC
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC-----CCCcEEEEEEec
Confidence            67799999999999988775310         012246799999998776666652     465555555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=1.2e-08  Score=94.77  Aligned_cols=278  Identities=14%  Similarity=0.113  Sum_probs=169.9

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------E-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      +..+++++.++.|..+|..+|+.+..+......          + ..+++  .+..+++++.|+.+..+|..+++     
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~-----  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK-----  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-----
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence            457778888999999999999998877643221          0 11122  35678888899999999998866     


Q ss_pred             CceeEEeccc----ccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccC-------------
Q 016522          148 LPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG-------------  204 (388)
Q Consensus       148 ~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~-------------  204 (388)
                        ........    ...+.+--...+ + .++.+..      +|.|..+|..+++.+..+.......             
T Consensus       139 --~~W~~~~~~~~~~~~~~~~P~v~~-~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~  214 (668)
T 1kv9_A          139 --AIWSQQTTDPAKPYSITGAPRVVK-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (668)
T ss_dssp             --EEEEEECSCTTSSCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             --EeeeeccCCCCCcceecCCCEEEC-C-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence              22222211    011111111112 2 3444432      5899999999999988874210000             


Q ss_pred             -------------CccCeEEEEeeCCCCcEEEEeeCCC-------------------ceEEEECCCCCcceEEEec--cc
Q 016522          205 -------------HTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--HE  250 (388)
Q Consensus       205 -------------~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~  250 (388)
                                   .......+++.| ...+++.++.++                   .|..+|.+++ +.+-.++.  |.
T Consensus       215 ~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~  292 (668)
T 1kv9_A          215 KTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGD  292 (668)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTC
T ss_pred             ccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCc
Confidence                         001112467777 556777776665                   3899999888 44444432  22


Q ss_pred             -------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCC---------------
Q 016522          251 -------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIP---------------  298 (388)
Q Consensus       251 -------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~---------------  298 (388)
                             .+.....+..+|+   .++.++.+|.+.++|..+++.+.........       ....               
T Consensus       293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~  372 (668)
T 1kv9_A          293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV  372 (668)
T ss_dssp             CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred             cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence                   2222233333665   6889999999999999999987443221100       0000               


Q ss_pred             ---------CeEEEEecCCCCEEEEEe------------------------------------cCCcEEEEEcccceEEe
Q 016522          299 ---------HVTSIAFSISGRLLFAGY------------------------------------SNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       299 ---------~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~  333 (388)
                               .-..++++|+...+++..                                    .+|.|..||+.+++.+.
T Consensus       373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W  452 (668)
T 1kv9_A          373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW  452 (668)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred             ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence                     011267788777665421                                    23789999999999988


Q ss_pred             eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...     +..++....+...+.++++++.||.++.|+...
T Consensus       453 ~~~-----~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          453 KVP-----YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             EEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             Ecc-----CCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence            763     122333333444677899999999999998653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=1.8e-08  Score=80.03  Aligned_cols=197  Identities=8%  Similarity=0.040  Sum_probs=131.2

Q ss_pred             CceeeeccccccCC--eeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCccE-EEEEECCCCCEEEE-eeC
Q 016522           56 DLVCCRTLQGHAGK--VYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWV-MTCAFSPTGQSVAC-GGL  129 (388)
Q Consensus        56 ~~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~-~~~  129 (388)
                      ..+.++++. |...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+....... ..+++  +++.|.. ...
T Consensus        30 ~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~  105 (262)
T 3nol_A           30 DYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESS
T ss_pred             ceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEee
Confidence            345666664 5543  4789998 676777777766  89999999999999887655421 23444  3444444 445


Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV  209 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i  209 (388)
                      ++.+.+||..+.+       ....+....   ....++++++.++++ ..++.|.++|..+.+....+........-..+
T Consensus       106 ~~~v~v~D~~t~~-------~~~ti~~~~---eG~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          106 NGLGFVWNIRNLR-------QVRSFNYDG---EGWGLTHNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             SSEEEEEETTTCC-------EEEEEECSS---CCCCEEECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECccCc-------EEEEEECCC---CceEEecCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            8899999998755       444444322   223344666554444 45788999999999888887432111111345


Q ss_pred             EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------------cCCeeEEEEccCCCEEEEeeC
Q 016522          210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~  270 (388)
                      +.+.|.  ++.+++..-.+..|.+.|..++ +.+..+...            ....+.|+|+|+++.|++.+.
T Consensus       175 NELe~~--~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          175 NELEWV--DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEE--TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEE--CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            567776  5667766667889999999988 666555431            134689999998887777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.18  E-value=4.9e-07  Score=86.16  Aligned_cols=284  Identities=10%  Similarity=0.040  Sum_probs=174.8

Q ss_pred             eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      |.++...+++.+.+ ++.++-+..|+..+++..... ......|.++...+++.+.+. +.++-+..|+..+..      
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~------  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKE------  246 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTE------
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCe------
Confidence            88888888875544 565545888998776543321 123456888888887775554 444348888876532      


Q ss_pred             ceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCC
Q 016522          149 PVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       149 ~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~  219 (388)
                       ......       -....|.++...++| . +..|+.+ -|.+||..++.........  ........|.++...+ ++
T Consensus       247 -~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g  321 (795)
T 4a2l_A          247 -IKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QG  321 (795)
T ss_dssp             -EEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TS
T ss_pred             -EEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-Cc
Confidence             111111       123568888887765 3 5556655 5889998877654432111  0112346789998886 55


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      . +..|+.++-|..|+....  ....+..       ....|.++...++|. |..|+.++-|..|+..++..........
T Consensus       322 ~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~  397 (795)
T 4a2l_A          322 G-MWLGTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED  397 (795)
T ss_dssp             C-EEEEESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred             C-EEEEECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence            4 556777778999987643  2222221       234688999888876 5557777779999987664332221110


Q ss_pred             C---CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          293 G---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       293 ~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      .   ......|.+++..++|+.|.+|+.++.|..||..+++...............|.++...++|.+.+.. .+| +.+
T Consensus       398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~  475 (795)
T 4a2l_A          398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVR  475 (795)
T ss_dssp             ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEE
T ss_pred             CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeE
Confidence            0   01124589999988888677787877899999887764432211101234679999999888755544 444 666


Q ss_pred             ecc
Q 016522          370 SLH  372 (388)
Q Consensus       370 w~~  372 (388)
                      |++
T Consensus       476 ~~~  478 (795)
T 4a2l_A          476 FNP  478 (795)
T ss_dssp             EET
T ss_pred             EeC
Confidence            654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.18  E-value=8.2e-07  Score=84.64  Aligned_cols=286  Identities=11%  Similarity=0.057  Sum_probs=176.5

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-------CCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      +...|.++...+++.+.+ |+.++-+.+||..+++.......       ....|.++...++|.+.+.. .+| +.+|+.
T Consensus       213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~  289 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYHE  289 (795)
T ss_dssp             -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEET
T ss_pred             CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEcC
Confidence            345788998888776554 44444488899776544322211       23569999999888766544 444 788887


Q ss_pred             CCCCCCCCCCceeEEe-------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc-ccCCccCeE
Q 016522          139 NSPTDKDGNLPVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVL  210 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~i~  210 (388)
                      .+..       .....       .-....|.++...++|  .+-.|+.++-|..|+..++.......... .......|.
T Consensus       290 ~~~~-------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~  360 (795)
T 4a2l_A          290 GTDS-------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVS  360 (795)
T ss_dssp             TTTE-------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEE
T ss_pred             CCCe-------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeE
Confidence            6532       11111       1123568888887765  37778887889999877654333221110 011345688


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---------cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      ++...+ +++ +..|+.++-|..||..+. . ...+.         .....|.++...++++.|..|+.++-|..||..+
T Consensus       361 ~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          361 CIVEDK-DKN-LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             EEEECT-TSC-EEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             EEEECC-CCC-EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            988876 544 455777778999998754 2 22221         1235688999888888577777777799999887


Q ss_pred             CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC--CCCCcCCCeeEEEECCCCCeEE
Q 016522          282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS--LQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      ++... +...........|.++...++|.+.+.. . +.+..||..+++.......  ........|.++...++|.+.+
T Consensus       437 ~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          437 GQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             CCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence            65433 2211111223458999988888755544 4 4599999887665432210  0011346799999999987655


Q ss_pred             EccCCCeEEEecc
Q 016522          360 TGSWDTNLKVSLH  372 (388)
Q Consensus       360 s~~~dg~v~iw~~  372 (388)
                      ... +| |..|+.
T Consensus       514 gt~-~G-l~~~~~  524 (795)
T 4a2l_A          514 GGE-EG-LSVFKQ  524 (795)
T ss_dssp             EES-SC-EEEEEE
T ss_pred             EeC-Cc-eEEEeC
Confidence            444 44 666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=9.9e-08  Score=79.86  Aligned_cols=227  Identities=12%  Similarity=0.073  Sum_probs=137.5

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CC-eEEEEe
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQ-TCVLWD  187 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-~v~i~d  187 (388)
                      .....++|+++++++++-..++.|..|+....        ...... .......+++.+++. ++++... ++ .|..+|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--------EEEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--------eEEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEc
Confidence            45788999999987777667889999987652        112221 234678899999874 5554433 33 577778


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---------cccCCeeEEEE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKF  258 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~  258 (388)
                      ..+++.......    ........++..+ ++..+++...++.|..+|.......+....         ..-...+.+  
T Consensus       102 ~~~g~~~~~~~~----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          102 KSDGTVETLLTL----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             CTTSCEEEEEEC----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             CCCCeEEEEEeC----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            777765443321    1122334455444 555555555688899998764311111111         011234455  


Q ss_pred             ccCCCEEEEe-eCCCcEEEEECCC-Cce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE--
Q 016522          259 FPDGNRFGTG-SDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--  332 (388)
Q Consensus       259 ~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  332 (388)
                      +|+++.|+.+ ...+.|..|++.. +..  ...+...      .....++++++|++.++....+.|.++|.. ++..  
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES------CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc------CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence            7888766554 4567899999874 321  1111111      125678999999887777678899999975 5442  


Q ss_pred             eeccCCCCCcCCCeeEEEEC---CCCCeEEEccCC
Q 016522          333 LNLGSLQNSHEGRITCLGLS---ADGSALCTGSWD  364 (388)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~d  364 (388)
                      ..+    ......+++++|.   +++..|+.++..
T Consensus       248 ~~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          248 AQA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence            233    2223568999998   887777766544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.15  E-value=2.9e-08  Score=92.28  Aligned_cols=287  Identities=10%  Similarity=0.020  Sum_probs=158.0

Q ss_pred             EEEeCC-CCCeEEEEeCCC-----------cEEEEECCCCCeee--Eeee-CCccEEEEEECCCCCEEEEeeC-CCcEEE
Q 016522           72 SLDWTS-ERNRIVSASQDG-----------RLIVWNALTSQKTH--AIKL-PCAWVMTCAFSPTGQSVACGGL-DSVCSI  135 (388)
Q Consensus        72 ~~~~~~-~~~~l~t~~~dg-----------~v~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~v  135 (388)
                      ++++.+ +++.++.|+.+.           .+.+||..+++-..  .+.. +.....++++..++++++.|+. ++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887543           58899988766432  2222 2223345678899999999985 458999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-CC-----CeEEEEecCCCceEEEee---cccccCCc
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWDITTGLRTSVFG---GEFQSGHT  206 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~v~i~d~~~~~~~~~~~---~~~~~~~~  206 (388)
                      ||..+..-     .....+.... .-.+++..+++ ++++.|+ .+     ..+.+||..++.....-.   ........
T Consensus       270 yd~~t~~W-----~~~~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          270 YDSSSDSW-----IPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             EEGGGTEE-----EECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred             ecCcCCce-----eECCCCCccc-cccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence            99876431     1111111111 11234455565 6777777 34     468999998876443310   00101100


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCC---------ceEEEECCCCCcceEEEecccC---------CeeEEEEcc-CCCEEEE
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDS---------TARLWDTRVASRAVRTFHGHEG---------DVNTVKFFP-DGNRFGT  267 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~~l~~  267 (388)
                      .    ..+.. ++..++.|+.+|         .+..||.... ........+..         .-.++.|.. ++++++.
T Consensus       343 ~----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          343 Q----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             T----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             c----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence            0    11112 344445554443         5678888765 22222221111         223444443 7788888


Q ss_pred             eeCCC-----------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----------CcEEEEE
Q 016522          268 GSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWD  325 (388)
Q Consensus       268 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d  325 (388)
                      |+.++           .+.+||..+..-.... ....+ ....-.+++..|++++++.|+.+           ..+.+||
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            87543           6788888766543322 00001 11112345667899999998754           4689999


Q ss_pred             cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CC-------eEEEecccee
Q 016522          326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DT-------NLKVSLHYYI  375 (388)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-------~v~iw~~~~~  375 (388)
                      ..+.+-.. +... ........+..+.++|++++.||. ++       .+.+|.+.|.
T Consensus       495 p~t~~W~~-~~~~-~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl  550 (656)
T 1k3i_A          495 PEQDTFYK-QNPN-SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL  550 (656)
T ss_dssp             GGGTEEEE-CCCC-SSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred             CCCCceee-cCCC-CCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence            88765432 2111 111222234556789999999885 22       3566665543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.15  E-value=1.3e-07  Score=79.87  Aligned_cols=242  Identities=14%  Similarity=0.072  Sum_probs=146.6

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC--------------------CccEEEEEECC-CCCEEEE
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------------CAWVMTCAFSP-TGQSVAC  126 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~  126 (388)
                      ....+++|.+++++++++..++.|..||..++... .+...                    ...+..+++.+ +++ |++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            34678899999987888888999999997765432 22211                    12478899998 565 444


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeE-Eecc-cccceEEEEEEe-CCCceEEEee-----------------CCCeEEEE
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSR-MLSG-HKGYVSCCQYVP-DEDTHLITSS-----------------GDQTCVLW  186 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~~~~-----------------~dg~v~i~  186 (388)
                      +...+.+..++..++.     ..... ...+ .......+++.+ +| .+.++-.                 .++.|..|
T Consensus        97 ~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             EETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             EECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence            5444557888866422     00111 1111 113467789998 76 4444432                 24778999


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCE
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                      |..+++.....      ........++++| +++ ++++-+..+.|..|++.... .....+....+ ...++++++|++
T Consensus       171 d~~~~~~~~~~------~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          171 DPSTKETTLLL------KELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             ETTTTEEEEEE------EEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             eCCCCEEEEec------cCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            98776543332      1123456789998 655 45555667899999987431 11122221223 788999999987


Q ss_pred             EEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          265 FGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       265 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .++...          .+.|..+|.. ++.+..+....+. ....++.+++ .++++.++...++.|..+++..
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            766544          4678888864 6666655443221 1234666666 3555555555677899998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1.9e-08  Score=93.45  Aligned_cols=243  Identities=12%  Similarity=0.111  Sum_probs=151.3

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-EEEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~  149 (388)
                      +..++.++.|+.|..+|..+|+.+..+...... ...+.-+|  .+..++++..      +|.|..+|..+++       
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-------  189 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-------  189 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-------
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-------
Confidence            457888889999999999999998877653210 00011111  1345555543      5889999998865       


Q ss_pred             eeEEecc-------------------------------cccceEEEEEEeCCCceEEEeeCCC-----------------
Q 016522          150 VSRMLSG-------------------------------HKGYVSCCQYVPDEDTHLITSSGDQ-----------------  181 (388)
Q Consensus       150 ~~~~~~~-------------------------------~~~~v~~~~~~~~~~~~l~~~~~dg-----------------  181 (388)
                      ....+..                               +......+++.++. .+++.++.++                 
T Consensus       190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence            2221110                               01111246777765 4677776665                 


Q ss_pred             --eEEEEecCCCceEEEeecccccC----CccCeEEEEeeCCCCc---EEEEeeCCCceEEEECCCCCcceEEEeccc--
Q 016522          182 --TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE--  250 (388)
Q Consensus       182 --~v~i~d~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  250 (388)
                        .|..+|..+++....+.......    ...+.....+.. +++   .++.++.+|.++++|..++ +.+.......  
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~  346 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVT  346 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCC
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccc
Confidence              49999999999988874310000    012222222222 333   6889999999999999887 4442221100  


Q ss_pred             ----------CC------------------------eeEEEEccCCCEEEEee---------------------------
Q 016522          251 ----------GD------------------------VNTVKFFPDGNRFGTGS---------------------------  269 (388)
Q Consensus       251 ----------~~------------------------i~~~~~~~~~~~l~~~~---------------------------  269 (388)
                                .+                        -..++++|+..+++...                           
T Consensus       347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  426 (668)
T 1kv9_A          347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA  426 (668)
T ss_dssp             SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred             cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence                      00                        01267777766665421                           


Q ss_pred             ---------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          270 ---------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       270 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                               .+|.|..||+.+++.+........      .....+...+.++++++.||.++.||..+++.+..+..
T Consensus       427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence                     247899999999998877654321      22233445678899999999999999999999988753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.12  E-value=4.3e-07  Score=77.33  Aligned_cols=247  Identities=11%  Similarity=0.015  Sum_probs=153.3

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~  144 (388)
                      +.+..+|.+..++. +|+.+.. ..|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++....  
T Consensus        32 ~~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--  106 (349)
T 3v64_C           32 RPDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--  106 (349)
T ss_dssp             CTTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred             CCCCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--
Confidence            34556777777744 5554443 468888876654443333 34458899999866655554 457889999987643  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                           ..............+++.+.++.++++-...+.|.+.++.........     .........++++|.++.++++
T Consensus       107 -----~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          107 -----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             -----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CTTCSCEEEEEEETTTTEEEEE
T ss_pred             -----ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-----eCCCCCcceEEEecCcCeEEEe
Confidence                 122222223345678888766677777777889999998765544433     2334567899999866767766


Q ss_pred             eeCC-CceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          225 GSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       225 ~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      -... +.|..++++..  ....+ ...-...+.++++|++..|+.+. ..+.|..+|+..... ..+....    .....
T Consensus       177 d~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~----~~~P~  249 (349)
T 3v64_C          177 DWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG----LPHPF  249 (349)
T ss_dssp             ECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS----CSSEE
T ss_pred             ccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCC----CCCce
Confidence            6555 78888887643  22222 22234578999998666665554 567899999875332 2222211    22367


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      .+++. .+.++++-...+.|..++..+++....+
T Consensus       250 giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          250 AITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            77773 4444455555678888885555544333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.12  E-value=4.1e-07  Score=78.65  Aligned_cols=245  Identities=11%  Similarity=-0.003  Sum_probs=151.9

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~  147 (388)
                      .-.|.+..+. .+|+.+.. ..|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++....     
T Consensus        78 ~~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----  149 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----  149 (386)
T ss_dssp             SSCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----
T ss_pred             CCeECCcccc-ceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----
Confidence            4456665553 34544443 578888887655444333 34558899999866555544 457789999987633     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                        ..............+++.+.++.++++-...+.|.+.++........+     .........++++|.++.++++-..
T Consensus       150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence              222222223345678888766676777777889999998765544443     2334567899999866666666555


Q ss_pred             C-CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          228 D-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       228 d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                      . +.|..+++... .........-...+.|+++|++..|+.+ +..+.|..+|+...... .+....    ......+++
T Consensus       223 ~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~----~~~P~giav  296 (386)
T 3v65_B          223 NTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQG----LPHPFAITV  296 (386)
T ss_dssp             SSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSS----CSSEEEEEE
T ss_pred             CCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECC----CCCceEEEE
Confidence            5 78888887643 2222222233457899999866666554 45678999998653332 222211    223677887


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                       ..+.++++-...+.|..+|..+++....+
T Consensus       297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          297 -FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             -ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence             34445555556778988886666544444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.09  E-value=7.7e-08  Score=87.49  Aligned_cols=261  Identities=16%  Similarity=0.171  Sum_probs=154.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE-EEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCc
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~  149 (388)
                      +..++.++.|+.|..+|..+|+.+.......... ..+.-+|  .+..+++++.      ++.|..+|..+++       
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-------  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE-------  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC-------
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc-------
Confidence            4578888889999999999999987766432100 0011111  1345555554      7899999998865       


Q ss_pred             eeEEecccc-------------------------------------c-ceEEEEEEeCCCceEEEeeCC-----------
Q 016522          150 VSRMLSGHK-------------------------------------G-YVSCCQYVPDEDTHLITSSGD-----------  180 (388)
Q Consensus       150 ~~~~~~~~~-------------------------------------~-~v~~~~~~~~~~~~l~~~~~d-----------  180 (388)
                      ....+....                                     . ....+++.+..+ .++.+..+           
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~g  266 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCS
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCC
Confidence            222111100                                     0 001345666543 44444321           


Q ss_pred             -----CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522          181 -----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFH  247 (388)
Q Consensus       181 -----g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~  247 (388)
                           +.|..+|..+++....+......     ....++. +.... ++   ..++.++.+|.++++|..++ +.+....
T Consensus       267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~  343 (571)
T 2ad6_A          267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEK  343 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeec
Confidence                 36999999999988877431100     0112221 22222 44   46778889999999999887 4443332


Q ss_pred             ccc-------------CCe--------------------------eEEEEccCCCEEEEee-------------------
Q 016522          248 GHE-------------GDV--------------------------NTVKFFPDGNRFGTGS-------------------  269 (388)
Q Consensus       248 ~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~-------------------  269 (388)
                      ...             .++                          ..++++|+..++++..                   
T Consensus       344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  423 (571)
T 2ad6_A          344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF  423 (571)
T ss_dssp             SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc
Confidence            111             111                          2457888777776653                   


Q ss_pred             ------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          270 ------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       270 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                                        .+|.|..||+.+++.+..+.....      +....+...+..+++++.||.|+.||..+++.
T Consensus       424 ~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                              347899999999998877654321      12222233466788899999999999999999


Q ss_pred             EeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          332 VLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      +..+..-......+   +.+..+|+.++
T Consensus       498 lw~~~~~~~~~~~p---~~~~~~G~~yv  522 (571)
T 2ad6_A          498 LWNFKMPSGGIGSP---MTYSFKGKQYI  522 (571)
T ss_dssp             EEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred             EEEEeCCCCcEeee---EEEEECCEEEE
Confidence            98875321122223   33445676443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.09  E-value=8.4e-08  Score=87.25  Aligned_cols=278  Identities=13%  Similarity=0.037  Sum_probs=163.1

Q ss_pred             CCeEEEEeC-CCcEEEEEC-CCCCeeeEeeeCCcc-E----------EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-V----------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        79 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      +..++.++. ++.|..+|. .+|+.+-.+...... +          ..++.  .+..+++++.|+.+..+|..+++.. 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~-  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN-  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE-
Confidence            446777777 899999999 899998777543310 0          11122  3567888888999999999886511 


Q ss_pred             CCCceeEEecccc--cceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeeccccc--------------
Q 016522          146 GNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS--------------  203 (388)
Q Consensus       146 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~--------------  203 (388)
                          .......+.  ..+.+--...+ + .++.++.      +|.|..+|..+++.+..+......              
T Consensus       139 ----W~~~~~~~~~~~~~~~~P~v~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          139 ----WEVEVCDPKVGSTLTQAPFVAK-D-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             ----EEEECCCGGGTCBCCSCCEEET-T-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ----EEecCCCCCccceeccCCEEEC-C-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence                111111111  01211111122 2 3444443      799999999999998877432100              


Q ss_pred             -------------------CCccCeEEEEeeCCCCcEEEEeeCC----------------CceEEEECCCCCcceEEEec
Q 016522          204 -------------------GHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       204 -------------------~~~~~i~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~  248 (388)
                                         ........+++.+ ....++.++.+                +.|..+|.+++ +.+-.++.
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~  290 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK  290 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence                               0000002345666 33445444422                35889999887 44444332


Q ss_pred             --cc--------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC--------CCCCCe-------
Q 016522          249 --HE--------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIPHV-------  300 (388)
Q Consensus       249 --~~--------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i-------  300 (388)
                        |.        .++ -+...++|+   .++.++.+|.+.++|..+++.+.........        ....++       
T Consensus       291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~  369 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT  369 (571)
T ss_dssp             STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred             CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence              11        121 122224674   5778889999999999999887765432200        000001       


Q ss_pred             -------------------EEEEecCCCCEEEEEe-------------------------------------cCCcEEEE
Q 016522          301 -------------------TSIAFSISGRLLFAGY-------------------------------------SNGDCYVW  324 (388)
Q Consensus       301 -------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~i~  324 (388)
                                         ..++++|+...+++..                                     .+|.|..|
T Consensus       370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~  449 (571)
T 2ad6_A          370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF  449 (571)
T ss_dssp             CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred             CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence                               2467888877776654                                     24789999


Q ss_pred             EcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      |..+++.+.....     ...+....+...+..++.++.||.|+.|+..
T Consensus       450 D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          450 DLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            9999998877631     1222222222345678888999999999854

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.08  E-value=1.3e-07  Score=85.97  Aligned_cols=278  Identities=12%  Similarity=0.040  Sum_probs=163.1

Q ss_pred             CCeEEEEeC-CCcEEEEEC-CCCCeeeEeeeCCcc-----------EEEEEECCCCCE----EEEeeCCCcEEEEeCCCC
Q 016522           79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-----------VMTCAFSPTGQS----VACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        79 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~vw~~~~~  141 (388)
                      +..+++++. ++.|.-+|. .+|+.+-.+......           ...++++|.+..    +++++.|+.+.-+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 899999999 899998777644321           123455444444    888888999999999886


Q ss_pred             CCCCCCCceeEEec--ccc--cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccC-------
Q 016522          142 TDKDGNLPVSRMLS--GHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG-------  204 (388)
Q Consensus       142 ~~~~~~~~~~~~~~--~~~--~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~-------  204 (388)
                      +       ......  .+.  ..+.+--...+ + .++.++      .+|.|+.+|.++++.+..+.......       
T Consensus       142 ~-------~~W~~~~~~~~~~~~~~ssP~v~~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~  212 (599)
T 1w6s_A          142 E-------TVWKVENSDIKVGSTLTIAPYVVK-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (599)
T ss_dssp             C-------EEEEEECCCGGGTCBCCSCCEEET-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             C-------EEEeecCCCCCccceeecCCEEEC-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence            6       222211  110  01111111122 2 355544      48999999999999988774321000       


Q ss_pred             -------------------------CccCe-EEEEeeCCCCcEEEEeeCC----------------CceEEEECCCCCcc
Q 016522          205 -------------------------HTADV-LSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRA  242 (388)
Q Consensus       205 -------------------------~~~~i-~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~  242 (388)
                                               ....+ ..+++.+ ...+++.++.+                +.|..+|.+++ +.
T Consensus       213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~  290 (599)
T 1w6s_A          213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EA  290 (599)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CE
T ss_pred             cccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ce
Confidence                                     00000 1345555 44555655544                37899999887 44


Q ss_pred             eEEEeccc----------CCeeEEEEc-cCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCC--------CCCC--
Q 016522          243 VRTFHGHE----------GDVNTVKFF-PDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIP--  298 (388)
Q Consensus       243 ~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~--  298 (388)
                      .-.++...          .++. +... .+|   ..++.++.+|.+.++|..+++.+.........        ....  
T Consensus       291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~  369 (599)
T 1w6s_A          291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV  369 (599)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred             eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCcee
Confidence            43333211          1121 2222 467   46777889999999999999988765432100        0000  


Q ss_pred             ------------------------CeEEEEecCCCCEEEEEe--------------------------------------
Q 016522          299 ------------------------HVTSIAFSISGRLLFAGY--------------------------------------  316 (388)
Q Consensus       299 ------------------------~i~~~~~~~~~~~l~~~~--------------------------------------  316 (388)
                                              .-..++++|+..++++..                                      
T Consensus       370 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~  449 (599)
T 1w6s_A          370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY  449 (599)
T ss_dssp             ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred             eccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccC
Confidence                                    012456777666554421                                      


Q ss_pred             -cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          317 -SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       317 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                       ..|.|..||+.+++.+.....     ..+...-.+...+.+++.++.||.++.|+..
T Consensus       450 ~~~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          450 EGLGQIKAYNAITGDYKWEKME-----RFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             BCCEEEEEECTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCcCeEEEEECCCCCEEeEecC-----CCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence             346899999999998877631     1111111112246678888999999998854

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.08  E-value=1.1e-07  Score=86.47  Aligned_cols=267  Identities=13%  Similarity=0.131  Sum_probs=156.1

Q ss_pred             EEeCCCCCe----EEEEeCCCcEEEEECCCCCeeeEeeeCCc----cEEE-EEECCCCCEEEEee------CCCcEEEEe
Q 016522           73 LDWTSERNR----IVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMT-CAFSPTGQSVACGG------LDSVCSIFN  137 (388)
Q Consensus        73 ~~~~~~~~~----l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~vw~  137 (388)
                      +++.|.+..    |+.++.|+.|..+|..+|+.+........    .+.+ -.. .++ .+++++      .+|.|+-+|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence            445444444    88888999999999999999877654331    1111 011 134 455554      378999999


Q ss_pred             CCCCCCCCCCCceeEEecccc-------------------------------------cce-EEEEEEeCCCceEEEeeC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHK-------------------------------------GYV-SCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~v-~~~~~~~~~~~~l~~~~~  179 (388)
                      ..+++       ....+....                                     ..+ ..+++.+.. .+++.+..
T Consensus       189 ~~TG~-------~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g  260 (599)
T 1w6s_A          189 VKTGE-------QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTG  260 (599)
T ss_dssp             TTTCC-------EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECC
T ss_pred             CCCCc-------EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCC
Confidence            98865       222111110                                     001 134555554 45555554


Q ss_pred             C----------------CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEE
Q 016522          180 D----------------QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWD  235 (388)
Q Consensus       180 d----------------g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d  235 (388)
                      +                +.|..+|..+++....+......     ....++. +.....++   ..++.++.+|.+.++|
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEE
Confidence            4                48999999999998887431100     0011121 22220144   5777888999999999


Q ss_pred             CCCCCcceEEEecc-------------cCCe--------------------------eEEEEccCCCEEEEee-------
Q 016522          236 TRVASRAVRTFHGH-------------EGDV--------------------------NTVKFFPDGNRFGTGS-------  269 (388)
Q Consensus       236 ~~~~~~~~~~~~~~-------------~~~i--------------------------~~~~~~~~~~~l~~~~-------  269 (388)
                      .+++ +.+......             ..++                          ..++++|+..++++..       
T Consensus       340 ~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (599)
T 1w6s_A          340 RTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  418 (599)
T ss_dssp             TTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             CCCC-CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence            9887 444332210             0011                          2356777666555421       


Q ss_pred             --------------------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          270 --------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       270 --------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                                                      .+|.|..||+.+++.+........      ...-.+...+.++++++.
T Consensus       419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~  492 (599)
T 1w6s_A          419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL  492 (599)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT
T ss_pred             ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECC
Confidence                                            347899999999988777644211      111112235677888999


Q ss_pred             CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522          318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCT  360 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  360 (388)
                      ||.++.||..+++.+..+.........+   +.+..+|+ ++++
T Consensus       493 dg~l~A~D~~tG~~lW~~~l~~g~~~~P---~~y~~~G~qyv~~  533 (599)
T 1w6s_A          493 DGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKGTQYVAI  533 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEeeCCCCcEecc---EEEEeCCEEEEEE
Confidence            9999999999999998874321122223   44555776 3443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.05  E-value=3.8e-06  Score=70.46  Aligned_cols=239  Identities=10%  Similarity=-0.010  Sum_probs=144.8

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      +|+.+.. ..|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++......  . ...........
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--~-~~~~~~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-SYDTVISRDIQ   77 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--c-ccEEEEeCCCC
Confidence            4444443 468999988776555443 34558899999876555544 45688999998752100  0 01122222223


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-CceEEEECCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRV  238 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  238 (388)
                      ....+++.+.+++++++-...+.|.++|+.........     .........++++|.++.++++.... +.|..+++..
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            45788888766566677677889999998765443333     22335678999998666666655443 6888888763


Q ss_pred             CCcceEEE-ecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          239 ASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       239 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .  ....+ ...-.....++++|++..|+.+. ..+.|..+|+.. .....+....  ........+++. .+.++++-.
T Consensus       153 ~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~--~~~~~P~giav~-~~~ly~~d~  226 (316)
T 1ijq_A          153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE--KRLAHPFSLAVF-EDKVFWTDI  226 (316)
T ss_dssp             C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT--TTTSSEEEEEEE-TTEEEEEET
T ss_pred             C--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecC--CccCCcEEEEEE-CCEEEEEEC
Confidence            3  22222 22334678999999776666554 567899999874 3333332211  112235677775 344555555


Q ss_pred             cCCcEEEEEcccceEEeec
Q 016522          317 SNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..+.|..++..+++....+
T Consensus       227 ~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          227 INEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTTEEEEEETTTCCCCEEE
T ss_pred             CCCeEEEEeCCCCcceEEE
Confidence            6778999997666544443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.05  E-value=3.3e-07  Score=72.24  Aligned_cols=198  Identities=10%  Similarity=0.017  Sum_probs=130.0

Q ss_pred             CceeeeccccccC--CeeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCccE-EEEEECCCCCEEEEeeCC
Q 016522           56 DLVCCRTLQGHAG--KVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWV-MTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        56 ~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d  130 (388)
                      ..+.+.++ .|..  -...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+....... ..+++. .++.......+
T Consensus         8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~   84 (243)
T 3mbr_X            8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRN   84 (243)
T ss_dssp             CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSS
T ss_pred             ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeC
Confidence            34566666 4654  466899986 55666666654  89999999999999887665421 234443 23444455668


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      +.+.+||..+.+       ....+..... -..+  .+++..++++ ..++.|.++|..+.+....+........-..++
T Consensus        85 ~~v~v~D~~tl~-------~~~ti~~~~~-Gwgl--t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           85 HEGFVYDLATLT-------PRARFRYPGE-GWAL--TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             SEEEEEETTTTE-------EEEEEECSSC-CCEE--EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCcCc-------EEEEEeCCCC-ceEE--eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence            999999998754       4444443222 1233  4566554554 458899999999998888875322111123456


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------------cCCeeEEEEccCCCEEEEeeC
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------EGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~  270 (388)
                      .+.+.  ++.+++..-.+..|.+.|..++ +.+..+...             ..-.+.|+++|+++.|++.+.
T Consensus       154 eLe~~--~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          154 ELEWV--NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eeEEe--CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            77776  5666666657889999999988 666555421             135689999998777766654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.04  E-value=7.2e-07  Score=75.22  Aligned_cols=246  Identities=7%  Similarity=-0.028  Sum_probs=146.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-------------------ccccceEEEEEEeCC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------------------GHKGYVSCCQYVPDE  170 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~  170 (388)
                      ....+++|++++++++++..++.|..|+.....       ......                   .....+..+++.+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-------FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-------eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            346678899999988888889999999876532       111100                   011346788998733


Q ss_pred             CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----------------CCceEE
Q 016522          171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARL  233 (388)
Q Consensus       171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------------dg~i~i  233 (388)
                      +. |+.+...+.|..+|..++... .+..............+++.+.+++++++...                 +|.|..
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            34 455544455888887755432 22111001112346788888734455554322                 367888


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGR  310 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (388)
                      ||.... . +..+.........++++|+++.|+.+ +..+.|..|++....  ....+..  ..   . ...++++++|+
T Consensus       170 ~d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~  241 (322)
T 2fp8_A          170 YDPSTK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGH  241 (322)
T ss_dssp             EETTTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSC
T ss_pred             EeCCCC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCC
Confidence            887644 2 22222223456789999999866655 556889999987532  1122211  11   1 67889999998


Q ss_pred             EEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          311 LLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       311 ~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +.++...          .+.|..+|. .++.+..+..........++++++ .++++.++...++.|..+....
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            6665544          467888886 466665553211111245677777 4676666666788888887653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=2.5e-07  Score=73.52  Aligned_cols=185  Identities=12%  Similarity=0.058  Sum_probs=123.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      ....+.|+ ++.++.+.+.+|.|+++|+.+++       ......  .......-..++++.+.+..-.++.+.+||..+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence            35778887 46777788888999999999866       222221  122222223344566777777899999999999


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----CCeeEEEEccCCCEE
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRF  265 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l  265 (388)
                      .+.+..+..      ...-..++.   ++..|+.+..++.|.++|..+. +.+..+.-..     ..++.+.|. +|...
T Consensus       126 l~~~~ti~~------~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          126 PQRERTTRY------SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             TEEEEEEEC------SSCCCCEEE---ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             CcEEEEEeC------CCceeEEec---CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            999998852      122244554   3345555556889999999887 5555554322     134667776 77655


Q ss_pred             EEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEEEEe
Q 016522          266 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      +..-.++.|.+.|..+++.+..+....        ......-.+.++++|+++.|++.+
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            555578899999999999988876541        112233579999999877555544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.02  E-value=5.3e-07  Score=82.08  Aligned_cols=277  Identities=18%  Similarity=0.110  Sum_probs=159.3

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE---------EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV---------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      ..++.++.++.|..+|..+|+.+-.+.......         ..+++  .+..+++++.++.+.-+|..+++       .
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~-------~  139 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGK-------V  139 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCC-------E
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCC-------E
Confidence            456666664459999999999988776543210         11122  35678888889999999998866       2


Q ss_pred             eEEec--cccc--ceE-EEEEEeC---CCceEEEee------CCCeEEEEecCCCceEEEeecccc--------------
Q 016522          151 SRMLS--GHKG--YVS-CCQYVPD---EDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQ--------------  202 (388)
Q Consensus       151 ~~~~~--~~~~--~v~-~~~~~~~---~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~--------------  202 (388)
                      .....  .+..  .+. .-....+   +...+++++      .+|.|..+|..+++.+........              
T Consensus       140 ~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g  219 (582)
T 1flg_A          140 VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG  219 (582)
T ss_dssp             EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred             EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence            22221  1110  111 1111221   111555554      378999999999998876532100              


Q ss_pred             -cC---------------------CccCeEEEEeeCCCCcEEEEeeC--------------------C----CceEEEEC
Q 016522          203 -SG---------------------HTADVLSVSISGSNSRMFVSGSC--------------------D----STARLWDT  236 (388)
Q Consensus       203 -~~---------------------~~~~i~~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~  236 (388)
                       ..                     ....-..+++.| ...+++.+..                    |    +.|..+|.
T Consensus       220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~  298 (582)
T 1flg_A          220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP  298 (582)
T ss_dssp             CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred             ccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence             00                     000012345566 4455555442                    2    57999999


Q ss_pred             CCCCcceEEEec--cc--------CCeeEEEEc-cCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC--------
Q 016522          237 RVASRAVRTFHG--HE--------GDVNTVKFF-PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------  294 (388)
Q Consensus       237 ~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------  294 (388)
                      .++ +.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|..+++.+.........        
T Consensus       299 ~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  376 (582)
T 1flg_A          299 SSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL  376 (582)
T ss_dssp             TTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred             CCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence            888 44444332  21        1111 2221 4664   7888999999999999999988665432100        


Q ss_pred             ---------------------CCCC-----------CeEEEEecCCCCEEEEEe--------------------------
Q 016522          295 ---------------------NEIP-----------HVTSIAFSISGRLLFAGY--------------------------  316 (388)
Q Consensus       295 ---------------------~~~~-----------~i~~~~~~~~~~~l~~~~--------------------------  316 (388)
                                           ....           .-..++++|+...+++..                          
T Consensus       377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  456 (582)
T 1flg_A          377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR  456 (582)
T ss_dssp             TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence                                 0000           011356677665555432                          


Q ss_pred             -------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          317 -------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       317 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                             .+|.|..||+.+++.+.....     ..++..-.....+.+++.|+.||.++.|+..
T Consensus       457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~g~~dg~l~A~D~~  515 (582)
T 1flg_A          457 IKRMYDDHVGSLRAMDPVSGKVVWEHKE-----HLPLWAGVLATAGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             EEESCSSCSEEEEEECTTTCCEEEEEEE-----SSCCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ecCCCCCCcceEEEEECCCCCEEEEecC-----CCCCcccceEeCCCEEEEECCCCcEEEEECC
Confidence                   257899999999998877632     1122111111246678889999999998854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=5.6e-06  Score=78.75  Aligned_cols=287  Identities=12%  Similarity=0.050  Sum_probs=170.1

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--------------eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------------LPCAWVMTCAFSPTGQSVACGGLDSV  132 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~  132 (388)
                      ...|.++...++|. |..|+..+-|.++|..++.......              .....|.++...++|. |-.|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            35699999888875 4556654568888987654322111              2345699999998887 455666666


Q ss_pred             EEEEeCCCCCCCCCCCceeEE-------ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          133 CSIFNLNSPTDKDGNLPVSRM-------LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      |..++......     .....       .......|.++...+++  .+..|+.++-|..||..++...... .. ....
T Consensus       335 l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~-~~~~  405 (781)
T 3v9f_A          335 INFISNAPPTF-----HTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK-EN-RELL  405 (781)
T ss_dssp             EEEECSSCCSC-----EEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------CC
T ss_pred             EEEeCCCCCcc-----eeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc-CC-CCCC
Confidence            88888765321     01000       01123568888777654  3667776667889997654332211 00 0123


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  282 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  282 (388)
                      ...|.++...+ ++.+ ..|+.++.|..+|..+.  ....+.   .....|.++...+++.+ ..|+. +-|..||..++
T Consensus       406 ~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          406 SNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLK--KFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             CSBEEEEEECT-TSCE-EEEETTEEEEEECSSSC--EEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSS
T ss_pred             CcceEEEEECC-CCCE-EEEeccCCEEEEcCCCC--cEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCC
Confidence            46788888775 5544 45676677888987654  222222   13457888888877764 44555 45889998776


Q ss_pred             ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      +................|.++...++|.+.+ |+.++-+..||..+++... +..........|.++...++|.+.++. 
T Consensus       480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T-  556 (781)
T 3v9f_A          480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLAT-  556 (781)
T ss_dssp             SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEE-
T ss_pred             eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEE-
Confidence            5433221111111134689999998887554 4454458889987665433 211111234578999999988755544 


Q ss_pred             CCCeEEEeccc
Q 016522          363 WDTNLKVSLHY  373 (388)
Q Consensus       363 ~dg~v~iw~~~  373 (388)
                      .+|.|..|+..
T Consensus       557 ~~Glv~~~d~~  567 (781)
T 3v9f_A          557 GEGLVCFPSAR  567 (781)
T ss_dssp             TTEEEEESCTT
T ss_pred             CCCceEEECCC
Confidence            46765777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.00  E-value=9e-07  Score=70.79  Aligned_cols=210  Identities=11%  Similarity=0.134  Sum_probs=137.7

Q ss_pred             eccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           61 RTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        61 ~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      +.+.|-.+.+..++|+|+++.| ++...++.|...|.. ++.+..+... ....-.+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            4677777789999999987655 457778899999987 8887777543 245788999999987777667788999988


Q ss_pred             CCCCCCCCCCceeEEe------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---CceEEEeecc--cccCCcc
Q 016522          139 NSPTDKDGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGGE--FQSGHTA  207 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~~~--~~~~~~~  207 (388)
                      .....    .......      ...+.....++|.|.++.++++.-.+ ...+|.+..   ..........  .......
T Consensus        99 ~~~~~----i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           99 TPNSE----VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             CTTCC----EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             CCCCe----eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence            76431    1111111      12345578999999875555544444 344444431   1112222110  0012345


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---------CCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      .+.+++++|..+.+++....+..|..+|...  +.+..+.-..         .....|+|.++|++.++ ++.+.++.|.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            6789999998888999999999999999763  3444433221         25688999999985444 6767666665


Q ss_pred             C
Q 016522          279 I  279 (388)
Q Consensus       279 ~  279 (388)
                      -
T Consensus       251 ~  251 (255)
T 3qqz_A          251 P  251 (255)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.99  E-value=1.1e-05  Score=69.99  Aligned_cols=240  Identities=10%  Similarity=-0.008  Sum_probs=148.4

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      +|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++......   ............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCC
Confidence            555444 4689999987665544433 44568899999866655555 45678888888652200   011222333344


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRV  238 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  238 (388)
                      ....+++.+.+++++++-...+.|.+.++........+     .........++++|..+.++++-.. .+.|...++..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            56788888766677777777889999999876555444     2344557899999866666655433 47888888874


Q ss_pred             CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      . .........-.....|+++|++..|+.+. ..+.|..+|+..... ..+...  .........+++. .+.++.+-..
T Consensus       235 ~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~l~~P~gl~v~-~~~lywtd~~  309 (400)
T 3p5b_L          235 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED--EKRLAHPFSLAVF-EDKVFWTDII  309 (400)
T ss_dssp             C-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEEC--SSTTSSEEEEEEE-TTEEEEEESS
T ss_pred             C-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeC--CCCCCCCEEEEEe-CCEEEEecCC
Confidence            4 22222233335678999998777776654 567899999865433 333221  1112235677763 3344455556


Q ss_pred             CCcEEEEEcccceEEeec
Q 016522          318 NGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~  335 (388)
                      .+.|..+|..+++.+..+
T Consensus       310 ~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          310 NEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SCSEEEEESSSCCCCEEE
T ss_pred             CCeEEEEEcCCCCceEEE
Confidence            778999997777655544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.96  E-value=2.7e-06  Score=72.41  Aligned_cols=208  Identities=13%  Similarity=0.014  Sum_probs=134.2

Q ss_pred             CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE-EEEeeCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      ..+.+++|++.+..|. +-...+.|..++.........+.........+++.+.+.. +++-...+.|.+.+++...   
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence            3478999997655554 5456788999998766544444333345678899875544 4555557889999987532   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                          ..............+++.|.++.++++-... +.|..+++.........     ...-.....++++|.++.++++
T Consensus       150 ----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          150 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             ----CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-----CSSCSCEEEEEEETTTTEEEEE
T ss_pred             ----eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCcceEEEeCCCCEEEEE
Confidence                1222223334568899998766666665555 88999988654333222     2233457899999867777777


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      -...+.|..+|+... .....+.........+++. .+.++++-...+.|..++..+++....+.
T Consensus       221 D~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          221 DAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            777788999998743 2222233333456778873 45555565567788888866666655553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.94  E-value=2.1e-06  Score=78.19  Aligned_cols=263  Identities=14%  Similarity=0.121  Sum_probs=153.3

Q ss_pred             CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc----cEE---EEEEC-CCCC-EEEEeeC------CCcEEEEeCCCCCC
Q 016522           79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVM---TCAFS-PTGQ-SVACGGL------DSVCSIFNLNSPTD  143 (388)
Q Consensus        79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~-~l~~~~~------dg~i~vw~~~~~~~  143 (388)
                      +..++.++.|+.|..+|..+|+.+........    .+.   .+.=. .+++ .+++++.      +|.|.-+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45778888999999999999999877664431    111   11101 1233 5666543      78899999887651


Q ss_pred             CCCCCceeEEeccc-----------------------------------------ccceEEEEEEeCCCceEEEeeC---
Q 016522          144 KDGNLPVSRMLSGH-----------------------------------------KGYVSCCQYVPDEDTHLITSSG---  179 (388)
Q Consensus       144 ~~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~~l~~~~~---  179 (388)
                             .......                                         ...-..+++.|.. .+++.+..   
T Consensus       197 -------~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~  268 (582)
T 1flg_A          197 -------IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPG  268 (582)
T ss_dssp             -------EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBS
T ss_pred             -------EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCC
Confidence                   1111100                                         0000234566654 34554442   


Q ss_pred             -----------------C----CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCc
Q 016522          180 -----------------D----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDST  230 (388)
Q Consensus       180 -----------------d----g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~  230 (388)
                                       |    +.|..+|..+++....+......     ....++. +.....++   ..++.++.+|.
T Consensus       269 ~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~  347 (582)
T 1flg_A          269 PWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF  347 (582)
T ss_dssp             SSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE
T ss_pred             cccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce
Confidence                             2    68999999999998887421100     0011221 22210134   47888999999


Q ss_pred             eEEEECCCCCcceEEEeccc-------------CC--------------------------------eeEEEEccCCCEE
Q 016522          231 ARLWDTRVASRAVRTFHGHE-------------GD--------------------------------VNTVKFFPDGNRF  265 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~~~~~~~l  265 (388)
                      ++++|..++ +.+.......             .+                                -..++++|+..++
T Consensus       348 l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  426 (582)
T 1flg_A          348 FYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF  426 (582)
T ss_dssp             EEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred             EEEEECCCC-CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence            999999887 4443332211             00                                0134667755555


Q ss_pred             EEee---------------------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          266 GTGS---------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       266 ~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      ++..                                 .+|.|..||+.+++.+........      ...-.....+.++
T Consensus       427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglv  500 (582)
T 1flg_A          427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLV  500 (582)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEE
T ss_pred             EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC------CcccceEeCCCEE
Confidence            5432                                 257899999999998877654321      1111122246688


Q ss_pred             EEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522          313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCT  360 (388)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  360 (388)
                      ++|+.||.++.||..+++.+..+........   .-+.|..+|+ |+++
T Consensus       501 f~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a---~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          501 FTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPITWEQDGEQYLGV  546 (582)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEEETTEEEEEE
T ss_pred             EEECCCCcEEEEECCCCCEEEEecCCCCccc---CceEEEECCEEEEEE
Confidence            8899999999999999999988743211111   2255656776 4443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.94  E-value=3.4e-06  Score=67.48  Aligned_cols=211  Identities=10%  Similarity=0.106  Sum_probs=135.5

Q ss_pred             EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522          153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  232 (388)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  232 (388)
                      .+.+-...+..++|.|+++.++++...++.|...|.. ++....+..    ......-.+++.+ ++.++++.-.++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence            4455567899999999876777778889999999998 777777632    3335678888887 666766666678899


Q ss_pred             EEECCCCCc--ceEEEe------cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeee--ccCCCCCCC
Q 016522          233 LWDTRVASR--AVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ--QHGENEIPH  299 (388)
Q Consensus       233 i~d~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~~~~~~~  299 (388)
                      ++++.....  .+....      ..+.....++|+|.++.|+++.+.....+|.+..   ...+.....  .........
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998876532  112221      1234468999999988888877666656666541   111222111  000112234


Q ss_pred             eEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc------CCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +..++++|... +++....+..+..+|.. ++.+..+... .+.      -.....|+|.++|++. ..+..+.++++..
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~-~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~  251 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT-KGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP  251 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS-TTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC-CccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence            78999999766 44555556788899965 4455444322 221      1367899999999844 4466666655543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.94  E-value=1.9e-06  Score=74.50  Aligned_cols=208  Identities=13%  Similarity=0.015  Sum_probs=134.7

Q ss_pred             CCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      ..+..++|.+.+..| ++-...+.|..++.........+.........+++.+.+..| ++-...+.|.+.+++...   
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence            457889999765544 455567889999987665444443333446778888755544 454556788888876532   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                          ..............+++.|.++.++++-... +.|..+++.........     ...-.....|+++|.++.++++
T Consensus       193 ----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          193 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             ----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEEGGGTEEEEE
T ss_pred             ----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCeeeEEEeCCCCEEEEE
Confidence                1222233335568899998766666665555 78999988765444433     2334457899999867777777


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      -...+.|..+|+... .....+.........+++. .+.++++-...+.|..++..+++....+.
T Consensus       264 D~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          264 DAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             ETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            777788999998743 2222333333456778883 45556666677888888876776665554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=2e-06  Score=75.30  Aligned_cols=244  Identities=10%  Similarity=0.042  Sum_probs=141.7

Q ss_pred             CeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C----cEEEEeCCCCC
Q 016522           69 KVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S----VCSIFNLNSPT  142 (388)
Q Consensus        69 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~vw~~~~~~  142 (388)
                      ....|+++| ++..|..+...+.|+.+|...+... .+.........++|+++++.|+++... +    .+.+++... .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-G  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-T
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-c
Confidence            467899998 4556666665588999998765543 333355668999999999966666542 2    233344322 1


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-E
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M  221 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~  221 (388)
                           +.....+.. ......+++.|+++.++++-..++.|..++...+.......    .........++++| +++ +
T Consensus       216 -----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~~~~~P~gia~~p-dG~~l  284 (430)
T 3tc9_A          216 -----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQDSGWEFHIQFHP-SGNYA  284 (430)
T ss_dssp             -----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CSSSSCCEEEEECT-TSSEE
T ss_pred             -----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cCCCCcceeEEEcC-CCCEE
Confidence                 111112221 23356788999544667776778899999998765433221    22234577899999 666 6


Q ss_pred             EEEeeCCCceEEEECCCCCcc---eEEEecc---------------cCCee-EEEEc--------cCCCEEEEeeCCCcE
Q 016522          222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVN-TVKFF--------PDGNRFGTGSDDGTC  274 (388)
Q Consensus       222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i  274 (388)
                      +++-...+.|..++.......   ...+.+.               -.... .++..        +++.++++-...+.|
T Consensus       285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence            666667788999887632111   1122111               01122 45553        345666665667788


Q ss_pred             EEEECCCCceeeEeeec----cC--------CCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEc
Q 016522          275 RLFDIRTGHQLQVYYQQ----HG--------ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~----~~--------~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  326 (388)
                      +.++ .++......-..    .+        .........++++|+ +.++++-..+..|+.+++
T Consensus       365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            8888 345433222110    00        011234788999995 544444445667887765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=1.5e-05  Score=75.92  Aligned_cols=284  Identities=11%  Similarity=0.019  Sum_probs=168.3

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe---------eeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN  137 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~  137 (388)
                      ...|.++...++|. |..|+.++-|..++..+.......         ......|.++...++|.+. .|+.++-+..|+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence            45799999998885 555666667888887655432211         1123569999988887754 555555688888


Q ss_pred             CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      ..+.....    ...........|.++...+++  .|..|+.++-|..+|..+++..... ..  ......|.++...+ 
T Consensus       390 ~~~~~~~~----~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~d~-  459 (781)
T 3v9f_A          390 NGKRVAIY----NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIE-LE--KNELLDVRVFYEDK-  459 (781)
T ss_dssp             TTEEEEEC----C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECC-ST--TTCCCCEEEEEECT-
T ss_pred             CCCCeEEE----ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEec-cC--CCCCCeEEEEEECC-
Confidence            76522100    000001234568888776654  3666777777999998776543321 10  12346788888776 


Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecc-----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH  292 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  292 (388)
                      ++. +..|+. +.|..||..+. .........     ...|.++...++|.+.+ |+.++-|..||..+++. ..+....
T Consensus       460 ~g~-lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~  534 (781)
T 3v9f_A          460 NKK-IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYE  534 (781)
T ss_dssp             TSE-EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTT
T ss_pred             CCC-EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCC
Confidence            554 444555 56888998764 222222111     35688999988887554 45434477888766543 2232211


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                       ......|.++..+++|.+.++ +.+|-+..||..+++.. .+.....-....|.++...++|.+.++ +.+| |..+++
T Consensus       535 -~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~  609 (781)
T 3v9f_A          535 -GFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT  609 (781)
T ss_dssp             -TCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred             -CCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence             112345889999888875554 44665588988765432 221110112346889999988875555 4556 444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.87  E-value=7.9e-06  Score=71.60  Aligned_cols=244  Identities=12%  Similarity=0.054  Sum_probs=142.0

Q ss_pred             CeeEEEeCCC--CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC----c-EEEEeCCCC
Q 016522           69 KVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----V-CSIFNLNSP  141 (388)
Q Consensus        69 ~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~-i~vw~~~~~  141 (388)
                      ....|+|+|+  +..|..+...+.|+.+|..++..... .........++++++|+ |+++...+    . +...+....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4678999985  44555555448999999877665443 33445689999999999 44444321    1 333332211


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-  220 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  220 (388)
                      .      .....+. .......+++.|+++.++++-..++.|+.+|..++.....+..   .........++++| +++ 
T Consensus       218 ~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~---~~~~~~~~~ia~dp-dG~~  286 (433)
T 4hw6_A          218 F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM---MDTKGSNFHIVWHP-TGDW  286 (433)
T ss_dssp             T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE---CSCCSSCEEEEECT-TSSE
T ss_pred             e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec---cCCCCCcccEEEeC-CCCE
Confidence            1      0011111 1233456788884446666666788999999987765222211   12222334799999 555 


Q ss_pred             EEEEeeCCCceEEEECCCCCcc---eEEEecc---------------cCCeeEEEE---------ccCCCEEEEeeCCCc
Q 016522          221 MFVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVNTVKF---------FPDGNRFGTGSDDGT  273 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~l~~~~~dg~  273 (388)
                      ++++-...+.|+.+++......   ...+.+.               -.....+++         .+++.++++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            6666666788999887532111   1122211               123567899         677777777667788


Q ss_pred             EEEEECCCCceeeEeeeccC-------------CCCCCCeEEEEec-CCCCEEEEEecCCcEEEEEcc
Q 016522          274 CRLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFS-ISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      |+.++. ++.. ..+.....             .........++++ ++|.++++=..++.|+.++++
T Consensus       367 I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          367 VRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            999985 4533 33322110             0112346788888 555555554556678777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.85  E-value=1.1e-05  Score=67.63  Aligned_cols=236  Identities=8%  Similarity=-0.012  Sum_probs=141.7

Q ss_pred             eEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           81 RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      +|+.+. ...|+..++..... ...+......+..++|++.+..|+ +-...+.|..+++.....      ........-
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL   78 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCC
Confidence            444443 35789999877642 222222223477899998655554 445567899999876421      011112222


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR  237 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~  237 (388)
                      .....+++.+.++.++++-...+.|.++++.........     .........+++.|.++.++++-. ..+.|..+++.
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            345678888766677777777889999998765443333     234456789999985565555542 35788888876


Q ss_pred             CCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .. .........-...+.++++|++..|+.+ +..+.|..+|+.... ...+...    .......+++.. +.++.+-.
T Consensus       154 G~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~----~~~~P~glav~~-~~lywtd~  226 (318)
T 3sov_A          154 GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKG----SLPHPFALTLFE-DILYWTDW  226 (318)
T ss_dssp             SC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----CCSCEEEEEEET-TEEEEEET
T ss_pred             CC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecC----CCCCceEEEEeC-CEEEEEec
Confidence            43 2222222223456899999966666555 456789999986433 3333221    122356777753 34444555


Q ss_pred             cCCcEEEEEcccceEEeec
Q 016522          317 SNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~  335 (388)
                      ..+.|..++..+++....+
T Consensus       227 ~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          227 STHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTEEEEEETTTCCSCEEE
T ss_pred             CCCeEEEEECCCCCceEEE
Confidence            5678999998766644443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=2.9e-05  Score=65.10  Aligned_cols=221  Identities=8%  Similarity=-0.003  Sum_probs=134.5

Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----CceEEEeecccccCC
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGH  205 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~  205 (388)
                      ...|+..++....       ...... .......++|.+.++.++++-...+.|..+++..    ......+     ...
T Consensus         9 ~~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~   75 (316)
T 1ijq_A            9 RHEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD   75 (316)
T ss_dssp             BSSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSS
T ss_pred             CCeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCC
Confidence            3568888988643       222222 3345678999987666677777788999999876    2222222     222


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-C-CcEEEEECCCCc
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTGH  283 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~  283 (388)
                      ......+++.+.+++++++-...+.|.++++... ...............++++|.+..|+.... . +.|..+++.. .
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~  153 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V  153 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-C
Confidence            2455788888756777777777889999998743 222223323456789999996665555443 2 6788888754 3


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ....+...    .......+++++++..|+.+. ..+.|..+|+...........  .........+++. .+.++++-.
T Consensus       154 ~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~  226 (316)
T 1ijq_A          154 DIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI  226 (316)
T ss_dssp             CEEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEET
T ss_pred             CeEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccCCcEEEEEE-CCEEEEEEC
Confidence            33333211    123478999999887776665 456899999864322111100  1122345677775 355555655


Q ss_pred             CCCeEEEecc
Q 016522          363 WDTNLKVSLH  372 (388)
Q Consensus       363 ~dg~v~iw~~  372 (388)
                      ..+.|..++.
T Consensus       227 ~~~~V~~~~~  236 (316)
T 1ijq_A          227 INEAIFSANR  236 (316)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEeC
Confidence            6677777664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.82  E-value=3.2e-06  Score=79.82  Aligned_cols=196  Identities=10%  Similarity=0.047  Sum_probs=112.1

Q ss_pred             CeeEEEeC-CCCCeEEEEeC-CC----cEEEEECCCC-Ceee-EeeeCCccEEEEEECCCCCEEEEeeCC-----CcEEE
Q 016522           69 KVYSLDWT-SERNRIVSASQ-DG----RLIVWNALTS-QKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSI  135 (388)
Q Consensus        69 ~v~~~~~~-~~~~~l~t~~~-dg----~v~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v  135 (388)
                      .+...+|| |||++||-+.. +|    .|+++|+.++ +.+. .+..   ....++|+|||+.|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998875433 23    5999999988 6322 1211   13467899999888877665     25777


Q ss_pred             EeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCc-eE--EEeecccccCCccCe
Q 016522          136 FNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGL-RT--SVFGGEFQSGHTADV  209 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~-~~--~~~~~~~~~~~~~~i  209 (388)
                      +++.++...     ....+. ........+.|+|+|..++++...  ...|.++|+.++. ..  ..+.    .......
T Consensus       252 ~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~  322 (751)
T 2xe4_A          252 HVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----PREKGVR  322 (751)
T ss_dssp             EETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----CCCTTCC
T ss_pred             EECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----cCCCCce
Confidence            887664311     112222 223345678999998654444432  3468888988752 12  2221    2233445


Q ss_pred             EEEEeeCCCCcEEEEeeCC--C--ceEEEECCCCCcceEE-EecccC--CeeEEEEccCCCEEEEeeCCCc--EEEEEC
Q 016522          210 LSVSISGSNSRMFVSGSCD--S--TARLWDTRVASRAVRT-FHGHEG--DVNTVKFFPDGNRFGTGSDDGT--CRLFDI  279 (388)
Q Consensus       210 ~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~  279 (388)
                      .++.|+. ++.+++....+  +  .|..+|+..+ ..... +..+..  .+..+.+. .+.++++...++.  |.++++
T Consensus       323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5666554 55555555544  3  5666676542 12222 233333  34455554 3344556666775  555665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=2.8e-06  Score=74.44  Aligned_cols=246  Identities=10%  Similarity=0.056  Sum_probs=139.2

Q ss_pred             cEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEE
Q 016522          111 WVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL  185 (388)
Q Consensus       111 ~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i  185 (388)
                      ....++++| ++..|+++...+.|+.+|+....       . ..+.........+++.++++.++++...++    .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------V-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-------E-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-------E-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            457889998 46666666655888899987633       2 222234456788999998754555544322    3444


Q ss_pred             EecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCCC
Q 016522          186 WDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGN  263 (388)
Q Consensus       186 ~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~  263 (388)
                      ++...... ...+.      .......++++|.++.++++-..++.|..++.... ....... ........++|+|+++
T Consensus       210 ~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          210 LTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSS
T ss_pred             EeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCC
Confidence            44332211 12221      12345678888866777777777889999998754 2212221 1123467899999999


Q ss_pred             EEEE-eeCCCcEEEEECCCC--ce--eeEeeeccCC----------CCCCCeE-EEEec--------CCCCEEEEEecCC
Q 016522          264 RFGT-GSDDGTCRLFDIRTG--HQ--LQVYYQQHGE----------NEIPHVT-SIAFS--------ISGRLLFAGYSNG  319 (388)
Q Consensus       264 ~l~~-~~~dg~i~i~d~~~~--~~--~~~~~~~~~~----------~~~~~i~-~~~~~--------~~~~~l~~~~~dg  319 (388)
                      +|+. -...+.|..++....  ..  ...+......          ....... .++..        ++|.+.++-..++
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~  362 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH  362 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence            5544 456778999886532  11  1122111000          0011223 45553        3455555555567


Q ss_pred             cEEEEEcccceEEeeccCC---CCC----------cCCCeeEEEECC-CCCeEEEccCCCeEEEecc
Q 016522          320 DCYVWDTLLAKVVLNLGSL---QNS----------HEGRITCLGLSA-DGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~---~~~----------~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~  372 (388)
                      .|+.++ .++........-   ..+          .-.....|++++ ++.++++-..++.|+...+
T Consensus       363 ~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          363 CIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            899888 345443332110   001          122578999999 4666666556777877654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.77  E-value=3.5e-05  Score=72.41  Aligned_cols=248  Identities=10%  Similarity=-0.044  Sum_probs=146.7

Q ss_pred             eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      ++.+..+. .+|+.+. ...|+..++........+ .....+..++|++....|+ +-...+.|+.+++......   ..
T Consensus       388 ~C~~~~~~-p~Ll~an-~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~  461 (791)
T 3m0c_C          388 ACKAVGSI-AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SS  461 (791)
T ss_dssp             CCEETTSC-CEEEEEC-BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------
T ss_pred             eeeecccc-ccccccc-ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cc
Confidence            34444332 2444443 356888887765544433 3445688999998555554 4455678888888753210   01


Q ss_pred             eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-
Q 016522          150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-  228 (388)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-  228 (388)
                      ....+.........|++.+.+++++++-...+.|.+.++........+     .........|++.|..+.++++-... 
T Consensus       462 ~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~  536 (791)
T 3m0c_C          462 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTP  536 (791)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCC
Confidence            222333334556788998877677778788899999999866544444     23345688999999556666654333 


Q ss_pred             CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      +.|...++... .....+...-.....|++++.+..|+.+. ..+.|..+++............   ........|++. 
T Consensus       537 ~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~---~~l~~P~glav~-  611 (791)
T 3m0c_C          537 AKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---KRLAHPFSLAVF-  611 (791)
T ss_dssp             CEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT---TTTSSEEEEEEE-
T ss_pred             CeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC---CccCCCCEEEEe-
Confidence            67888888643 22223333335688999998666666654 4567999998654433332211   111234566663 


Q ss_pred             CCCEEEEEe-cCCcEEEEEcccceEEeec
Q 016522          308 SGRLLFAGY-SNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       308 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  335 (388)
                       +..|+.+. ..+.|...|..+++.+..+
T Consensus       612 -~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          612 -EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             -CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence             33555444 4567888886666544433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.77  E-value=6.4e-05  Score=65.18  Aligned_cols=210  Identities=10%  Similarity=-0.030  Sum_probs=132.3

Q ss_pred             ccCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q 016522           66 HAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~  139 (388)
                      ....+.+|+|++.+..|. +-...+.|..+++...    .....+.........+++.+. +.++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345688999998655554 4455678888987652    233333334456789999884 4455555567889999887


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                      ...       ..............+++.|.++.++.+-.. .+.|...++.........     ...-.....|++++.+
T Consensus       190 g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glavd~~~  257 (400)
T 3p5b_L          190 GVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLS  257 (400)
T ss_dssp             TCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTT
T ss_pred             CCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----ECCCCceEEEEEEeCC
Confidence            632       222233333456889999876555555433 478999988765444443     2333567899999866


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      +.++++-...+.|..+|+... ........  ......++++. .+.++++-...+.|..+|..+++....+.
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          258 GRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            667776666788999998754 22222221  22345567773 44455566667889999987787766654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=3.2e-06  Score=78.60  Aligned_cols=245  Identities=10%  Similarity=0.108  Sum_probs=133.2

Q ss_pred             EEEECC-CCCEEEEeeCCC-----------cEEEEeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEee-C
Q 016522          114 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G  179 (388)
Q Consensus       114 ~~~~~~-~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~  179 (388)
                      .+++.+ +++.++.|+.++           .+.+||..++.-     .....+ ..+.....++++..++ .+++.|+ .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-----~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-----SDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-----CCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-----EeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence            556666 888888887543           578899887542     122222 1222333345666765 6777777 4


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CC-----CceEEEECCCCCcceEEEec-----
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHG-----  248 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-----  248 (388)
                      +..+.+||..+......-  .  ......-.+++..+ ++++++.|+ .+     ..+.+||..+. . ...+..     
T Consensus       264 ~~~v~~yd~~t~~W~~~~--~--~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~-W~~~~~~~~~p  336 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGP--D--MQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK-T-WTSLPNAKVNP  336 (656)
T ss_dssp             TTCEEEEEGGGTEEEECC--C--CSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT-E-EEEETTSCSGG
T ss_pred             CCceEEecCcCCceeECC--C--CCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC-c-ceeCCCccccc
Confidence            568999999887544332  1  11122223445555 778888888 34     46899998754 1 222210     


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCC---------cEEEEECCCCceeeEeeeccC----CCCCCCeEEEEec-CCCCEEEE
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDG---------TCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA  314 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~l~~  314 (388)
                      ....-....+..++..++.|+.+|         .+..||..+............    ......-.++.|. .++++++.
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence            000000011223555555565444         467888877654332221110    0001112444444 36778888


Q ss_pred             EecCC-----------cEEEEEcccceEEeeccCCCCCcCCC-eeEEEECCCCCeEEEccCC-----------CeEEEec
Q 016522          315 GYSNG-----------DCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWD-----------TNLKVSL  371 (388)
Q Consensus       315 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d-----------g~v~iw~  371 (388)
                      |+.++           .+.+||..+..-......  ...... -.+++..|++++++.||.+           ..+.+|+
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            87543           578888776654332200  111122 2344567899999999865           4577777


Q ss_pred             cc
Q 016522          372 HY  373 (388)
Q Consensus       372 ~~  373 (388)
                      +.
T Consensus       495 p~  496 (656)
T 1k3i_A          495 PE  496 (656)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=4.8e-05  Score=63.66  Aligned_cols=207  Identities=7%  Similarity=-0.048  Sum_probs=131.5

Q ss_pred             CeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCee-eEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        69 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      .+.+++|.+.+. ++++-...+.|..++...+... ..+...-.....+++.+.+ .++++-...+.|.+++++...   
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence            577899998544 4555556788999998765422 2233333456788898754 444555567889999987532   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                          ..............+++.|.++.++.+- +..+.|...++.........     ...-.....+++++.++.++++
T Consensus       113 ----~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          113 ----RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             ----CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEE
T ss_pred             ----EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-----ECCCCCccEEEEeccCCEEEEE
Confidence                1122223345568899998765544444 23578888888654433332     2233457899999867777777


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      -...+.|..+|+... ...............+++. .+.++++-...+.|..++..+++....+.
T Consensus       184 D~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          184 DAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             ETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            777889999998743 2222223234456677775 34455555567889999987777665553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.70  E-value=5.1e-07  Score=84.11  Aligned_cols=234  Identities=11%  Similarity=-0.001  Sum_probs=136.0

Q ss_pred             CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .+.|+..++.+.+....+.. ...+..++|++.+..|+.+. ..+.|+.+++........   ....+.........+++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEE
Confidence            35788888776655444333 23467899998776666654 457899999875210000   11111111123455777


Q ss_pred             EeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-CceEEEECCCCCcceEE
Q 016522          167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRT  245 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  245 (388)
                      .+.+++++++-...+.|.++++........+     .........+++.|.++.++++-... +.|..+++... .....
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l  534 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL  534 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEE
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEE
Confidence            7655566777677889999998766544443     22234567888988556555554333 67888777643 11111


Q ss_pred             EecccCCeeEEEEccCCCEEE-EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          246 FHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                      ....-...+.|+|+|++..|+ +-+..+.|..+++.... ...+....  ........+++..+ .++++....+.|..+
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFSA  610 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence            222234567899999755554 44566789999986433 33332211  11112345555543 444455567899999


Q ss_pred             EcccceEEeec
Q 016522          325 DTLLAKVVLNL  335 (388)
Q Consensus       325 d~~~~~~~~~~  335 (388)
                      |..+++.+..+
T Consensus       611 d~~~G~~~~~i  621 (699)
T 1n7d_A          611 NRLTGSDVNLL  621 (699)
T ss_dssp             ETTTEEEEECC
T ss_pred             EccCCCceEEe
Confidence            98888887776

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.70  E-value=9e-05  Score=62.39  Aligned_cols=280  Identities=8%  Similarity=0.006  Sum_probs=147.7

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      ...+.+|.|.+++..+++ +.+|.| +...+.++.-....    .....+.++.|.+ +..++ ++..+.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence            347999999887777774 556765 33334443322221    1244688999976 44444 455664433 222222


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                          .+........+.+.+..+.+.+++ ..++ ++.+|.|..- ...++.-....    ......+..+.+.+ ++.++
T Consensus       110 ----tW~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~S-~DgG~tW~~~~----~~~~~~~~~~~~~~-~~~~~  177 (327)
T 2xbg_A          110 ----SWSQIPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYRT-KDSGKNWQALV----QEAIGVMRNLNRSP-SGEYV  177 (327)
T ss_dssp             ----SCEECCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEEE-SSTTSSEEEEE----CSCCCCEEEEEECT-TSCEE
T ss_pred             ----CceECccccCCCCCeEEEEEECCC-CEEE-EeCCccEEEE-cCCCCCCEEee----cCCCcceEEEEEcC-CCcEE
Confidence                111111111223446677777754 4444 4456654321 12233322221    23455788999988 66676


Q ss_pred             EEeeCCCceEE-EECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522          223 VSGSCDSTARL-WDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  300 (388)
Q Consensus       223 ~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i  300 (388)
                      +++. +|.+.. .|-. + ..... -......+..+.+.+++..++ ++.+|.+.+.+...++.-....... ......+
T Consensus       178 ~~g~-~G~~~~S~d~g-G-~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~-~~~~~~~  252 (327)
T 2xbg_A          178 AVSS-RGSFYSTWEPG-Q-TAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPL-RRNSVGF  252 (327)
T ss_dssp             EEET-TSSEEEEECTT-C-SSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTT-SSCCSCE
T ss_pred             EEEC-CCcEEEEeCCC-C-CceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCc-ccCCcce
Confidence            6654 444433 3421 1 11111 223456788899999887554 4567877776433233222221110 0112247


Q ss_pred             EEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ..+.+.+++.+++++ .+|.+ ++....++....+... ......+.++.|.+++ .+++++.+|.|.-+..
T Consensus       253 ~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          253 LDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG-TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             EEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc-CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            889999887777666 46766 3444445433333110 1233567888887555 4666677898776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=7e-05  Score=65.87  Aligned_cols=257  Identities=8%  Similarity=0.023  Sum_probs=146.8

Q ss_pred             CeeEEEeCCC-CCeE-EEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEE-------CCCCCEEEEeeCCC-----
Q 016522           69 KVYSLDWTSE-RNRI-VSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF-------SPTGQSVACGGLDS-----  131 (388)
Q Consensus        69 ~v~~~~~~~~-~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-----  131 (388)
                      ....|+|.|. +..| ++-...+.|++.|..++.........   ......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568999983 4444 44444467888998776655444332   235899999       99999777766554     


Q ss_pred             --cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC-------CCce---------
Q 016522          132 --VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-------TGLR---------  193 (388)
Q Consensus       132 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-------~~~~---------  193 (388)
                        .|.+++....... ........+... .....++.+|++..++++-..++.|..+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~-~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTF-DDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCC-STTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCce-eecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence              2556653321100 000000112111 2335678899766777788888999999997       5543         


Q ss_pred             --EEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcce---EEEecc---c------------CC
Q 016522          194 --TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAV---RTFHGH---E------------GD  252 (388)
Q Consensus       194 --~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~------------~~  252 (388)
                        ...+.   ..........++++| +++ ++++-+....|+.++.......+   ..+-+.   .            ..
T Consensus       298 g~~~~l~---~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~  373 (496)
T 3kya_A          298 NTFKQLF---TIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN  373 (496)
T ss_dssp             TTEEEEE---ECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred             cccceeE---ecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence              11110   022334567999999 666 55555667788887654321111   222221   0            12


Q ss_pred             ee-EEEEc-------cCCCEEEEeeCCCcEEEEECCCCceeeEeeecc-----------C--C------CCCCCeEEEEe
Q 016522          253 VN-TVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------G--E------NEIPHVTSIAF  305 (388)
Q Consensus       253 i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~--~------~~~~~i~~~~~  305 (388)
                      .. .+...       +++.++++=.....|+.++ .++. +.++....           +  .      ........+++
T Consensus       374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav  451 (496)
T 3kya_A          374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY  451 (496)
T ss_dssp             EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred             CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence            33 44554       4566666666778899998 4553 33333211           0  0      11234678999


Q ss_pred             cCC-CCEEEEEecCCcEEEEEcccceEEe
Q 016522          306 SIS-GRLLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       306 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                      +++ |.++++=..+..|+.+++.....+.
T Consensus       452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          452 DDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             ECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            987 6555555567789988876655443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.67  E-value=3.5e-05  Score=67.52  Aligned_cols=245  Identities=9%  Similarity=0.080  Sum_probs=140.6

Q ss_pred             cEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---C-eEE
Q 016522          111 WVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q-TCV  184 (388)
Q Consensus       111 ~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~v~  184 (388)
                      ....++|+|+  +..|+.+...+.|+.++..++.        ...+.........+++.+++. ++++....   . .+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence            3678999984  4445555444889999986543        233333445678999999985 55544321   1 233


Q ss_pred             EEecCCCceE-EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEec-ccCCeeEEEEccC
Q 016522          185 LWDITTGLRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHG-HEGDVNTVKFFPD  261 (388)
Q Consensus       185 i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~i~~~~~~~~  261 (388)
                      ..+...+... ..+      ........++++|.++.++++-..++.|+.+|...+ .. ...+.. .......++|+|+
T Consensus       211 ~~~~~~~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          211 LFTRASGFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             EECGGGTTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEEEEEEECSCCSSCEEEEECTT
T ss_pred             EEECCCCeeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEEEEEeccCCCCCcccEEEeCC
Confidence            3333222110 111      122345667888866777777667788999998755 32 122211 1122346999999


Q ss_pred             CCEEEEe-eCCCcEEEEECCC--Cce--eeEeeeccC----------CCCCCCeEEEEe---------cCCCCEEEEEec
Q 016522          262 GNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHG----------ENEIPHVTSIAF---------SISGRLLFAGYS  317 (388)
Q Consensus       262 ~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~----------~~~~~~i~~~~~---------~~~~~~l~~~~~  317 (388)
                      +++|+.+ ...+.|..++...  +..  ...+.....          .........+++         .++|.+.++-..
T Consensus       284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            9955544 4567899988652  221  112211100          001223677899         677776666666


Q ss_pred             CCcEEEEEcccceEEeeccCCC-------------CCcCCCeeEEEEC-CCCCeEEEccCCCeEEEecc
Q 016522          318 NGDCYVWDTLLAKVVLNLGSLQ-------------NSHEGRITCLGLS-ADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ++.|+.++. ++........-.             ...-.....|+++ ++|.++++-..++.|+...+
T Consensus       364 n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          364 SHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            788999985 554433221100             0012347899999 67776666666778877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.66  E-value=0.00023  Score=65.41  Aligned_cols=228  Identities=9%  Similarity=0.001  Sum_probs=144.2

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      +|+.+ ..+.|+..++.+......+.. .-..+..++|++.+..|+.+ ..++.|..++++...       .........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~   79 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGL   79 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCC
Confidence            45544 456899999987654443332 22458899999976665554 457889988887532       222222222


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCCceEEEECC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTR  237 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~  237 (388)
                      .....+++.+.+++++++-...+.|.+.++.........     ...-.....+++.|..+.++++- +..+.|...++.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence            456778888776677777777889999998765443333     23345678999999666666654 235678778876


Q ss_pred             CCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      .. . ...+...-.....|++++++..|+.+. ..+.|..+|+..... ..+...     ......+++.. +.++++-.
T Consensus       155 G~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l~~P~glav~~-~~ly~tD~  225 (628)
T 4a0p_A          155 GS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----LPHPFGLTQYQ-DYIYWTDW  225 (628)
T ss_dssp             SC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----CSCEEEEEEET-TEEEEEET
T ss_pred             CC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----CCCceEEEEEC-CEEEEecC
Confidence            44 2 223323445678999999766666554 567899999875443 333221     12356777764 33334444


Q ss_pred             cCCcEEEEEcccce
Q 016522          317 SNGDCYVWDTLLAK  330 (388)
Q Consensus       317 ~dg~i~i~d~~~~~  330 (388)
                      ..+.|...|..+++
T Consensus       226 ~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          226 SRRSIERANKTSGQ  239 (628)
T ss_dssp             TTTEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCC
Confidence            47788888866554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.64  E-value=0.00027  Score=64.84  Aligned_cols=203  Identities=7%  Similarity=-0.035  Sum_probs=118.1

Q ss_pred             cCCeeEEEeCCCCCeEEEE-eCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVAC-GGLDSVCSIFNLNSPTD  143 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~  143 (388)
                      -..+.+++|++.+..|+.+ ...+.|..+++..... ...+...-.....+++.+.+..|+. -...+.|.+.+++... 
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence            3457899999966666544 4567888888865532 2233333356889999996555554 4567899999987632 


Q ss_pred             CCCCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                            ........-.....+++.|.++.++++- +..+.|...++.........     ...-.....+++++.++.++
T Consensus       118 ------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~~~~P~Glald~~~~~LY  186 (619)
T 3s94_A          118 ------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLY  186 (619)
T ss_dssp             ------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEE
T ss_pred             ------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-----eCCCCCCcEEEEEccCCEEE
Confidence                  1122223334567889998765555554 23467777777654443333     23345678999998667777


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ++-...+.|..+|+... .......+......++++..+ .++++-...+.|...|..+++
T Consensus       187 ~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          187 WADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEETTTCCEEEESSSCC-EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             EEeCCCCeEEEecCCCC-ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            77667788999888643 211111111222345666544 333343455667666665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.62  E-value=0.00027  Score=69.39  Aligned_cols=285  Identities=13%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             cCCeeEEEeCCC------CCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEEC--CCCCEEEEeeCCCcEEEE
Q 016522           67 AGKVYSLDWTSE------RNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFS--PTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        67 ~~~v~~~~~~~~------~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~~~~~dg~i~vw  136 (388)
                      .+.|.|+++.|.      +++++.|.. |++|+|+++.+.+.+....... ..+.++.+.  ....+|.+|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368999996 9999999998877665444322 233444332  234678899999998777


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE-ee
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-IS  215 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~~  215 (388)
                      .++...   +.....+...-...++.-..+...+...+++.+ +....+|--+. ..... +     -....+..++ |+
T Consensus       633 ~~d~~t---g~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~l~~s-~-----l~~~~v~~~~~F~  701 (1158)
T 3ei3_A          633 GLNIET---GLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-KLVFS-N-----VNLKEVNYMCPLN  701 (1158)
T ss_dssp             EECTTT---CCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-SEEEE-E-----BSSSCCCEEEEEC
T ss_pred             EEcCCC---CccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-ceEEe-c-----cChHHhceEeccC
Confidence            765421   122222222222345544444444433333333 44444444332 22211 1     1112333333 32


Q ss_pred             CCC-CcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCC----------------------
Q 016522          216 GSN-SRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------------------  271 (388)
Q Consensus       216 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------  271 (388)
                      ... .+-++..+ ++.++|..+....+. ++.+. -...+..++++|+.+.++.+..+                      
T Consensus       702 se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1158)
T 3ei3_A          702 SDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL  779 (1158)
T ss_dssp             CSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred             cccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence            211 23344333 456998887544222 22222 34567888888877765544311                      


Q ss_pred             ---------------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEE---ecCC-CCEEEEEe----
Q 016522          272 ---------------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA---FSIS-GRLLFAGY----  316 (388)
Q Consensus       272 ---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~----  316 (388)
                                                 +.|++.|..+.+.+..+.....    ..+.+++   |..+ ..++++|+    
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n----E~~~sv~~v~~~~~~~~~lvVGTa~~~  855 (1158)
T 3ei3_A          780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN----EYALSLVSCKLGKDPNTYFIVGTAMVY  855 (1158)
T ss_dssp             EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT----EEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred             hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC----cceEEEEEEEEccCCCEEEEEEeeecC
Confidence                                       2366666666665544433222    1244443   4333 45888887    


Q ss_pred             ------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                            ..|.|++|++..++......   ....++|++++-- +|++|++.  ..+|++|....
T Consensus       856 ~~e~~~~~Gri~vf~v~~~kL~lv~~---~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~  913 (1158)
T 3ei3_A          856 PEEAEPKQGRIVVFQYSDGKLQTVAE---KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTT  913 (1158)
T ss_dssp             TTCSSCCCEEEEEEEEETTEEEEEEE---EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECT
T ss_pred             CCCCCCCceEEEEEEEECCEEEEEEE---EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCC
Confidence                  35789999987554333221   3456789988743 45444433  47899987654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.54  E-value=6.6e-05  Score=61.83  Aligned_cols=172  Identities=10%  Similarity=0.025  Sum_probs=112.5

Q ss_pred             ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc--cCCccCeEEEEe---eCCCCcEEEEeeC-
Q 016522          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSI---SGSNSRMFVSGSC-  227 (388)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~~l~~~~~-  227 (388)
                      +......-.++.|.+....++++.-..+.|..||...+...........  ......+..+.+   .| .+.++++... 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence            3444455567899987656566666899999999986644433211000  011224578999   57 5777775432 


Q ss_pred             ------------CCceEEEECC---CCCcceEEEe--ccc-----------CCeeEEEEccCCCEEEEeeCC-CcEEEEE
Q 016522          228 ------------DSTARLWDTR---VASRAVRTFH--GHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFD  278 (388)
Q Consensus       228 ------------dg~i~i~d~~---~~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~d-g~i~i~d  278 (388)
                                  +..|..||+.   ++ +.+....  ...           .....++..++|+..++++.. +.|...+
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        5779999998   55 3333332  111           247899999999999999888 8888888


Q ss_pred             CCCCceeeEeeecc-CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          279 IRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       279 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      .... ....+.... ........+.++++|+|+.|++....|.+..+|+..
T Consensus       166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            6543 333332211 111223478999999999888887799999999874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.50  E-value=0.0003  Score=64.56  Aligned_cols=228  Identities=8%  Similarity=-0.014  Sum_probs=133.2

Q ss_pred             CCcEEEEECCCCC-eeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522           88 DGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ  165 (388)
Q Consensus        88 dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (388)
                      ...|+..++.... ........-..+..++|++.+..|+.+.. .+.|..++++....      ........-.....++
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEEEEE
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcCeEE
Confidence            4578888887543 22222233445789999997766666544 67888888875320      1122232334678899


Q ss_pred             EEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcceE
Q 016522          166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVR  244 (388)
Q Consensus       166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  244 (388)
                      +.+.+++++++-...+.|.+.++.........     ...-.....|++.|.++.++++-- ..+.|...++... ....
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~  164 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFI  164 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEE
Confidence            99876677777778899999999765544333     233455778999985666666542 2456777776633 2222


Q ss_pred             EEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522          245 TFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  323 (388)
Q Consensus       245 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (388)
                      .....-.....|++++++..|+.+ ...+.|..+|+............     ......+++..+ ..+.+-..++.|..
T Consensus       165 l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~~~P~gi~~~~~-~ly~td~~~~~V~~  238 (619)
T 3s94_A          165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-----LPHPFALTLFED-ILYWTDWSTHSILA  238 (619)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred             EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-----CCCceEEEEeCC-EEEEecCCCCEEEE
Confidence            222334467899999976666555 45678999998654333222111     112356677655 34444445678999


Q ss_pred             EEcccceEEe
Q 016522          324 WDTLLAKVVL  333 (388)
Q Consensus       324 ~d~~~~~~~~  333 (388)
                      .|..+++...
T Consensus       239 ~d~~tg~~~~  248 (619)
T 3s94_A          239 CNKYTGEGLR  248 (619)
T ss_dssp             EESSSCCCCE
T ss_pred             EECCCCcccE
Confidence            9987765443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=0.00023  Score=66.98  Aligned_cols=208  Identities=10%  Similarity=-0.029  Sum_probs=128.2

Q ss_pred             cCCeeEEEeCCCCCe-EEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECCCCCEEEE-eeCCCcEEEEeCCC
Q 016522           67 AGKVYSLDWTSERNR-IVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSVCSIFNLNS  140 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vw~~~~  140 (388)
                      ...+.+|+|.+.+.. +++-...+.|+.+++...    .....+.........|++.+.++.|+. -...+.|.+.+++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            456788999985544 455556678888887653    223333334455778999887755554 45578999999875


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      ..       ....+.........|++.|.++.++++-... +.|...++.........     ...-.....|++++..+
T Consensus       503 ~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-----~~~l~~P~GLavD~~~~  570 (791)
T 3m0c_C          503 VK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSG  570 (791)
T ss_dssp             SS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----CSSCSCEEEEEEETTTT
T ss_pred             Ce-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-----eCCCCCceEEEEecCCC
Confidence            32       2222233344578899999765555554333 78999998765554444     33345788999998677


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      .++++-...+.|..+++... ........  .-....+|++. .+.++++-...+.|...|..+++.+..+
T Consensus       571 ~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          571 RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            77776666778999998654 22222222  12234566664 2344444446678888887777655444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.45  E-value=0.00016  Score=60.13  Aligned_cols=185  Identities=12%  Similarity=0.204  Sum_probs=119.3

Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC----c---EEEEeeC---CCceEEEECCCCCc
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS----R---MFVSGSC---DSTARLWDTRVASR  241 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~---~l~~~~~---dg~i~i~d~~~~~~  241 (388)
                      .+++.....+-+.+||+ +++.+..+     ..  +.++.+..-| +-    .   ++++...   +++|.+|++.....
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~-----~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSY-----NT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEE-----CC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEc-----cC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            45666677788999999 78888776     22  4566666665 21    1   3333333   57899997743223


Q ss_pred             ceEEEec------cc-CCeeEEEE--ccC-CC-EEEEeeCCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEE
Q 016522          242 AVRTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSI  303 (388)
Q Consensus       242 ~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~  303 (388)
                      .+..+..      .. ..+..+++  +|. +. ++++...+|.+..|++..       .+.+..+...      +.+-.+
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------sq~Egc  185 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN------SQTEGM  185 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS------SCEEEE
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC------CCcceE
Confidence            3444421      11 45677888  674 43 688888899999999832       2334444332      247788


Q ss_pred             EecCCCCEEEEEecCCcEEEEEcc-----cceEEeeccCCCCCcCCCeeEEEE--CCCCC-eEEEcc-CCCeEEEeccc
Q 016522          304 AFSISGRLLFAGYSNGDCYVWDTL-----LAKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKVSLHY  373 (388)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~s~~-~dg~v~iw~~~  373 (388)
                      ...+....|+++-++..|..++..     +++.+..+..  ......+..|++  .++++ +|++++ .+..+.+|...
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            899988999999998777777754     3455554421  223346888888  45555 555555 67899999764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.44  E-value=5.4e-06  Score=77.23  Aligned_cols=207  Identities=12%  Similarity=-0.033  Sum_probs=124.5

Q ss_pred             CCeeEEEeCCCCCeEEEE-eCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCC
Q 016522           68 GKVYSLDWTSERNRIVSA-SQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~  141 (388)
                      ..+.+|+|.+.+..|+.+ ...+.|+.+++..    ......+.........+++.+.+ .++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            356789999876666554 4567899999875    22222222222335678888654 44444455788999998753


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      .       ....+.........+++.|.++.++++-... +.|..+++.........     ...-.....|+++|.++.
T Consensus       486 ~-------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-----~~~l~~PnGlavd~~~~~  553 (699)
T 1n7d_A          486 K-------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSGR  553 (699)
T ss_dssp             C-------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-----CSSCSSCCCEEECTTTCC
T ss_pred             c-------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-----eCCCCCccEEEEeccCCE
Confidence            2       1222222223456788888765555554333 78888887644332222     122345678999986777


Q ss_pred             EEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522          221 MFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  289 (388)
                      ++++-...+.|..+|+...  ....+..   .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus       554 LY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          554 LYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEEEETTTTEEEEECSSSS--CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEEecCCCeEEEEccCCC--ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            7777777889999998743  2222221   1223445666543 455555567889999988877766553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.40  E-value=0.00055  Score=56.45  Aligned_cols=208  Identities=9%  Similarity=-0.032  Sum_probs=123.0

Q ss_pred             CCeeEEEeCCCCCeEEEEe-CCCcEEEEECCCCCeeeEeeeCC--------ccEEEEEE---CCCCCEEEEee-------
Q 016522           68 GKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPC--------AWVMTCAF---SPTGQSVACGG-------  128 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~l~~~~-------  128 (388)
                      .---+++|.+....|..++ ..|+|..||...+..... ....        ..+..+.|   .|+++++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3445789988555665555 789999999875544333 2211        24689999   68888877644       


Q ss_pred             ------CCCcEEEEeCC---CCCCCCCCCceeEEeccc-----------ccceEEEEEEeCCCceEEEeeCC-CeEEEEe
Q 016522          129 ------LDSVCSIFNLN---SPTDKDGNLPVSRMLSGH-----------KGYVSCCQYVPDEDTHLITSSGD-QTCVLWD  187 (388)
Q Consensus       129 ------~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d  187 (388)
                            .+..+..||+.   +++     ......+...           ......++..++| +..++++.- +.|...+
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~-----~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSK-----PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCC-----CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEEC
T ss_pred             cccccCCCCEEEEEcCCcCCCCC-----EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEe
Confidence                  25779999998   433     1122222211           1347889999987 567777777 8888888


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cc---cCCeeEE-EEccC
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH---EGDVNTV-KFFPD  261 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~i~~~-~~~~~  261 (388)
                      ......................+.|+++| ++++|++....|.|..+|++..........  +.   -.....+ ..-.+
T Consensus       166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          166 ADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             TTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred             CCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence            76543322221110012233467999999 666666665599999999985422011111  21   1123343 22236


Q ss_pred             CCE-EEEeeCCCcEEEEECCCCc
Q 016522          262 GNR-FGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       262 ~~~-l~~~~~dg~i~i~d~~~~~  283 (388)
                      |+. +++....+.+.+.+....+
T Consensus       245 G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             TEEEEEEEETTEEEEEECSSTTS
T ss_pred             CEEEEEEcCCCCEEEEECCCCcc
Confidence            777 4455556666666655433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=0.00046  Score=60.73  Aligned_cols=249  Identities=8%  Similarity=0.001  Sum_probs=141.6

Q ss_pred             EEEEEECC-CCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecc---cccceEEEEE-------EeCCCceEEEeeC
Q 016522          112 VMTCAFSP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQY-------VPDEDTHLITSSG  179 (388)
Q Consensus       112 v~~~~~~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~~~~~  179 (388)
                      ...|+|+| ++..|+++ ...+.|++.|+..+.       +......   .......++|       .+++..++++...
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            56899998 34444444 444678888887643       2222221   1235788999       9988545555444


Q ss_pred             CC------eEEEEecCC-CceE-----EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC-------CCC
Q 016522          180 DQ------TCVLWDITT-GLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-------VAS  240 (388)
Q Consensus       180 dg------~v~i~d~~~-~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~  240 (388)
                      ++      .|.+++... +...     ..+.      .......++++|.++.++++-..++.|..+|+.       ++.
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~  287 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG  287 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence            32      366665433 1221     1221      112446778898777888888888899999987       332


Q ss_pred             c-----c-----eEE-Ee-cccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCC--Cce--eeEeeeccCC---------
Q 016522          241 R-----A-----VRT-FH-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHGE---------  294 (388)
Q Consensus       241 ~-----~-----~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~~---------  294 (388)
                      .     +     ... +. +.......++|+|++++|+.+ +....|+.++...  +..  ...+....+.         
T Consensus       288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~  367 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT  367 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred             eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence            1     0     112 11 123346789999999965544 4567888866543  221  1122221000         


Q ss_pred             -CCCCCeE-EEEec-------CCCCEEEEEecCCcEEEEEcccceEEeeccCC-------------C------CCcCCCe
Q 016522          295 -NEIPHVT-SIAFS-------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------------Q------NSHEGRI  346 (388)
Q Consensus       295 -~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~------~~~~~~v  346 (388)
                       ....... .++..       ++|.++++=..+..|+.++ .++........-             .      ...-...
T Consensus       368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P  446 (496)
T 3kya_A          368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV  446 (496)
T ss_dssp             GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred             ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence             0111234 44554       4566666666678999998 455433221110             0      0112357


Q ss_pred             eEEEECCC-CCeEEEccCCCeEEEeccce
Q 016522          347 TCLGLSAD-GSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       347 ~~~~~~~~-~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ..|+++++ |.+.++=..+..|+.+....
T Consensus       447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            89999996 77666666788899887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.39  E-value=0.00018  Score=61.18  Aligned_cols=232  Identities=10%  Similarity=0.080  Sum_probs=121.4

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee--Eee---eCCccEEEEEECCC---CCEEEEeeC-C-----CcE
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH--AIK---LPCAWVMTCAFSPT---GQSVACGGL-D-----SVC  133 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~--~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i  133 (388)
                      .....++|.|+|+++++ ..+|.|.+++  +++...  .+.   ........++|+|+   +..|+++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            35779999999985554 5669999998  443221  111   12356899999998   555555433 2     567


Q ss_pred             EEEeCCCCCCCCCCCceeEEec---ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCCc-----
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL-----  192 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~-----  192 (388)
                      ..++....... ........+.   ........++|.|+| .++++.+.             .|.|.-++....-     
T Consensus       108 ~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          108 VRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            77777642100 0001111122   111223578999997 45554332             2566666654310     


Q ss_pred             -------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc--------eEEEECCC---------------CCcc
Q 016522          193 -------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--------ARLWDTRV---------------ASRA  242 (388)
Q Consensus       193 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~---------------~~~~  242 (388)
                             ....+.    .++ .....++|+|.++.++++-.....        |.+.....               ...+
T Consensus       186 f~~~~~~~~~i~a----~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          186 FLGRRGARPEVYS----LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TTTCTTSCTTEEE----ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             ccCCCCCCccEEE----EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                   000110    122 235678888855565555433222        33332111               0012


Q ss_pred             eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      +..+. +......++| .+|.++++.-..+.|...++.....      ...+..     ....+..+++.|||.++++..
T Consensus       261 ~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          261 LYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             SEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECTTSCEEEEEC
T ss_pred             eEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECCCCcEEEEEe
Confidence            23332 2234567777 4676666666667788877764331      112211     123588999999997665543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=2.7e-05  Score=73.47  Aligned_cols=199  Identities=10%  Similarity=0.013  Sum_probs=110.4

Q ss_pred             ceEEEEEE-eCCCceEEEeeCCC----eEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----
Q 016522          160 YVSCCQYV-PDEDTHLITSSGDQ----TCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----  228 (388)
Q Consensus       160 ~v~~~~~~-~~~~~~l~~~~~dg----~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  228 (388)
                      .+....|+ |+|..++++...+|    .|+++|+.++ +.+..       ........+.|+| +++.|+....+     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSGTNGEIVWGP-DHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEEECSCCEECS-STTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccCceeeEEEec-CCCEEEEEEECCCCCC
Confidence            56778999 99855444444443    5999999988 53211       1111235688999 55555544443     


Q ss_pred             CceEEEECCCCCcc-eEEEe-cccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCc-ee--eEeeeccCCCCCCCe
Q 016522          229 STARLWDTRVASRA-VRTFH-GHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGH-QL--QVYYQQHGENEIPHV  300 (388)
Q Consensus       229 g~i~i~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~~~i  300 (388)
                      ..|..+++.+.... ...+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+...    .....
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----~~~~~  322 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----EKGVR  322 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----CTTCC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----CCCce
Confidence            25778888765221 22222 22334667899999999887653   3468889988752 12  222111    11234


Q ss_pred             EEEEecCCCCEEEEEecC----CcEEEEEcccceEEee-ccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          301 TSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       301 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      .++.|+.++.+++....+    ..|..+|+.+...... +..  ......+..+.+. .+.++++...||..++|...
T Consensus       323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred             EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence            455544433344444433    2677777764211111 100  1112245666665 34566777788887777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.31  E-value=0.00079  Score=57.19  Aligned_cols=237  Identities=10%  Similarity=0.023  Sum_probs=124.3

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeC---CCceEEEeeC---
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPD---EDTHLITSSG---  179 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---  179 (388)
                      -.....++|.|+|++++ +..+|.|.+++... .      .....+   .........++++|+   +..++++-+.   
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G-~------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLISPSG-K------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEECSSC-E------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEeCCC-c------eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            34578999999998554 55669998886322 1      111111   122345788999997   4344444332   


Q ss_pred             C----CeEEEEecCCC--ce--EEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCC
Q 016522          180 D----QTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV  238 (388)
Q Consensus       180 d----g~v~i~d~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~  238 (388)
                      +    +.|..|+....  ..  ...+..............+.|.| ++.++++.+.             .|.|.-++...
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence            3    56778877654  11  11110001111112346789998 6777766432             24555555432


Q ss_pred             CC-------cceEEEecccCCeeEEEEcc-CCCEEEEeeCCC---cEEEEECCCCcee---------------eEeeecc
Q 016522          239 AS-------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG---TCRLFDIRTGHQL---------------QVYYQQH  292 (388)
Q Consensus       239 ~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~---------------~~~~~~~  292 (388)
                      .-       .......++. ....++|+| ++.++++-...+   .|.+..  .+...               ...... 
T Consensus       179 ~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~-  254 (354)
T 3a9g_A          179 RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT-  254 (354)
T ss_dssp             CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec-
Confidence            10       0111222333 357899999 666555433222   233322  22100               000000 


Q ss_pred             CCCCCCCeEEEEec-------CCCCEEEEEecCCcEEEEEcccc-eEE--eeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          293 GENEIPHVTSIAFS-------ISGRLLFAGYSNGDCYVWDTLLA-KVV--LNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       293 ~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                       .........++|.       .+|.++++....+.|...++... +..  ..+.   ......+..+++.|||.+.++..
T Consensus       255 -~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          255 -GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF---KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             -TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC---TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec---cCCCCCeeEEEECCCCcEEEEEe
Confidence             0011246778883       46767766666778988888753 222  1221   22346789999999998666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.31  E-value=0.00087  Score=55.78  Aligned_cols=201  Identities=12%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC----CCc--e-EEEeeC--CCeEEEEec--
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDT--H-LITSSG--DQTCVLWDI--  188 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~~~~~--dg~v~i~d~--  188 (388)
                      ...+++.....+-+.+||+.. +       ....+..  +.++.+..-|.    +..  + +++...  +++|.+|++  
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G-~-------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG-K-------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS-C-------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcCCC-c-------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            345666667778899999944 3       3444432  45666666652    111  2 333334  578999976  


Q ss_pred             CCCceEEEeeccc-c-cCCccCeEEEEe--eCCCC-cEEEEeeCCCceEEEECCCC------CcceEEEecccCCeeEEE
Q 016522          189 TTGLRTSVFGGEF-Q-SGHTADVLSVSI--SGSNS-RMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEGDVNTVK  257 (388)
Q Consensus       189 ~~~~~~~~~~~~~-~-~~~~~~i~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~~~  257 (388)
                      .++. +..+.... . ......+..+|+  +|..+ .++++...+|.+..|++...      .+.++.+.. .+.+..+.
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv  186 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA  186 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence            3443 33331100 0 011156677777  66444 36778888899999988421      244566654 45788999


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCC-----CceeeEeeeccCCCCCCCeEEEEe--cCCCC-EEEEEe-cCCcEEEEEcc-
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRT-----GHQLQVYYQQHGENEIPHVTSIAF--SISGR-LLFAGY-SNGDCYVWDTL-  327 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~-  327 (388)
                      ..+....|+.+-++.-|..++.+.     ++.+....   .......+..+++  .++++ +|++++ .++++.+||.. 
T Consensus       187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~---~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD---GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS---SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec---CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            999888999999987777777552     22332221   1111223677777  55666 777776 46799999996 


Q ss_pred             cceEEeec
Q 016522          328 LAKVVLNL  335 (388)
Q Consensus       328 ~~~~~~~~  335 (388)
                      +.+.+..+
T Consensus       264 ~~~~vg~f  271 (355)
T 3amr_A          264 KNKYVADF  271 (355)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            56666555

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.26  E-value=0.00046  Score=57.28  Aligned_cols=231  Identities=12%  Similarity=0.153  Sum_probs=116.2

Q ss_pred             CCCeEEEEe-CC-----CcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCC
Q 016522           78 ERNRIVSAS-QD-----GRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK  144 (388)
Q Consensus        78 ~~~~l~t~~-~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~  144 (388)
                      ++..++.|+ .+     ..+.+||..+.+-...  +.........+.  .++..++.|+.+     ..+.+||..+... 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED-   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence            344555665 32     3688889876543221  111111112222  357777888765     4688999876430 


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                       ..+.....+........ ++.. + +.+++.|+.+     ..+.+||+.+.+....-..    .....-.+++..  ++
T Consensus        91 -~~W~~~~~~p~~r~~~~-~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~  160 (301)
T 2vpj_A           91 -GVWYSVAPMNVRRGLAG-ATTL-G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----QTAREGAGLVVA--SG  160 (301)
T ss_dssp             -CCCEEECCCSSCCBSCE-EEEE-T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEEEE--TT
T ss_pred             -CeeEECCCCCCCcccee-EEEE-C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC----CCCcccceEEEE--CC
Confidence             00111111111111112 2222 3 4667777644     3688999988765443221    111112223333  56


Q ss_pred             cEEEEeeCC-----CceEEEECCCCCcceEEEecccC---CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceee
Q 016522          220 RMFVSGSCD-----STARLWDTRVASRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQ  286 (388)
Q Consensus       220 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  286 (388)
                      .+++.|+.+     ..+.+||+.+.  ....+.....   ....+.+  ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            788887765     45888898754  2222211111   1122222  56777777764     468999998765433


Q ss_pred             EeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522          287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (388)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (388)
                      .-..   +........+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       237 ~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          237 VTSM---TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ECCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCC---CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2211   111111222222  66777777665     357888886654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.25  E-value=0.0028  Score=58.27  Aligned_cols=200  Identities=11%  Similarity=0.033  Sum_probs=125.8

Q ss_pred             CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~  145 (388)
                      ..+.+|+|++.+..|. +-..++.|..+++........+.........+++.+.+..|+ +-...+.|.+.+++...   
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence            4678999999665554 555678999999876544444443334577889987655554 44556789999987532   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                          ........-.....+++.|..+.++.+- +..+.|...++.........      ..-.....+++++.++.++++
T Consensus       114 ----~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~------~~~~~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          114 ----RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV------PNVGRANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             ----CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE------CSCSSEEEEEEETTTTEEEEE
T ss_pred             ----EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE------CCCCCcceEEEccccCEEEEE
Confidence                1112223334568899998654544443 23578888888665544433      234567899999866667777


Q ss_pred             eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      -...+.|..+|+.....  ..+.........+++.. +.++++-...+.|...|..+++
T Consensus       184 D~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          184 DLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            67778899999875433  23333334456777754 3444444446677777755443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.24  E-value=0.00089  Score=56.41  Aligned_cols=220  Identities=14%  Similarity=0.130  Sum_probs=116.7

Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeC--CCceEEEe-eC--CCeEEEEecCCCceEEEeecccc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPD--EDTHLITS-SG--DQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~~l~~~-~~--dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      .+|.|.++|..+.......+..... +.........+.+.++  +..+|+.+ ..  +..|.+|++........+.....
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6889999998753211111110000 1112345667777763  43234333 22  56788887765432222222222


Q ss_pred             cCCccCeEEEEeeCCCCcEEEEee-----------------CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522          203 SGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  265 (388)
                      ...-...+.+.+.+ ++.++++..                 ..|.|..+|..   . +..+...-...+.++|+||++.|
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence            23345678999998 777776643                 12455555542   2 22333334567899999999887


Q ss_pred             EEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecC-CcEEEEEcc--cceEEeeccCCCC
Q 016522          266 GTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSN-GDCYVWDTL--LAKVVLNLGSLQN  340 (388)
Q Consensus       266 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~  340 (388)
                      +.+. ..+.|..|++.....+.......   .....-.+++++ +|++.+++..+ +.|..|+..  .+..+..+... .
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~-~  311 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDI-L  311 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECT-T
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEcc-C
Confidence            7665 56789999986422221111111   123467889999 59877766544 355555543  24444444321 1


Q ss_pred             CcCCCeeEEEECCCCCeE
Q 016522          341 SHEGRITCLGLSADGSAL  358 (388)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l  358 (388)
                      +....|..+ |..||+.|
T Consensus       312 ~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          312 SEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             SSSCEEEEE-EEECSSSC
T ss_pred             CCCcEEEEE-EEcCCCEE
Confidence            123345544 44467643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.24  E-value=0.0009  Score=56.86  Aligned_cols=239  Identities=15%  Similarity=0.068  Sum_probs=121.3

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE---ecccccceEEEEEEeC---CCceEEEeeCC--
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM---LSGHKGYVSCCQYVPD---EDTHLITSSGD--  180 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~~~~~d--  180 (388)
                      -.....++|.|+|++++ +..+|.|.+++ .. .     ......   ..........++++|+   +..++++-...  
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g-~-----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-EG-R-----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE-TT-E-----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE-CC-C-----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence            34578999999998555 45669999998 22 1     011111   1122346788999997   44544444432  


Q ss_pred             ---CeEEEEecCCCceE--EEeecccc--cCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCCC-
Q 016522          181 ---QTCVLWDITTGLRT--SVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVA-  239 (388)
Q Consensus       181 ---g~v~i~d~~~~~~~--~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-  239 (388)
                         +.|..++...+...  ..+.....  .........++|.| ++.++++.+.             .|.|.-++.... 
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence               67888887654211  11110011  11112346889998 6677666432             245655655420 


Q ss_pred             -----------CcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcE------EEEECCCCceee----E-------e-e
Q 016522          240 -----------SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGHQLQ----V-------Y-Y  289 (388)
Q Consensus       240 -----------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~~----~-------~-~  289 (388)
                                 ........++. ....++|+| ++.++++-...+.+      .+.-+..+....    .       + .
T Consensus       181 p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                       01111122332 357799999 66655554332321      122222222000    0       0 0


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE------EeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV------VLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ....-........++| .+|.++++....+.|...++.....      ...+    ......+..+++.|||.+.++..
T Consensus       260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~----~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA----LSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE----EESSCCEEEEEECTTSCEEEEEC
T ss_pred             CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee----cccCCCeeEEEECCCCcEEEEEe
Confidence            0000001113566777 4666666555666788887754321      1111    11235789999999998766653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.19  E-value=0.00068  Score=56.25  Aligned_cols=229  Identities=13%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             CeEEEEeCC----CcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCCC
Q 016522           80 NRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        80 ~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~  148 (388)
                      ..++.|+.+    ..+.+||..+.+-...-..+.  ..-..+.+  ++..++.|+.+     ..+.+||..+..     +
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W   89 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-----W   89 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE-----E
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc-----e
Confidence            345555533    357888887654322211111  11122222  67777888755     358888887643     1


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCC-----eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  223 (388)
                      .....+........ ++.. + +.+++.|+.++     .+.+||+.+.+....-.  .  .....-.+++..  ++.+++
T Consensus        90 ~~~~~~p~~r~~~~-~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv  160 (302)
T 2xn4_A           90 TSVANMRDRRSTLG-AAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--M--NTRRSSVGVGVV--GGLLYA  160 (302)
T ss_dssp             EEECCCSSCCBSCE-EEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEE
T ss_pred             eeCCCCCccccceE-EEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--C--CCcccCceEEEE--CCEEEE
Confidence            11111111111111 2222 3 46677776553     57889988876544321  1  111122233333  567777


Q ss_pred             EeeCC-------CceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEee
Q 016522          224 SGSCD-------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       224 ~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~  289 (388)
                      .|+.+       ..+.+||+.+.  ....+.....  .-.+++.. ++++++.|+.+     ..+.+||+.+.+-.....
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence            77653       35788998754  1222211111  11122222 67777887764     368899988765433221


Q ss_pred             eccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccceEE
Q 016522          290 QQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKVV  332 (388)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  332 (388)
                      ... .  ......+.  .++++++.|+.++     .+.+||..+.+-.
T Consensus       238 ~~~-~--r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          238 MNM-C--RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             CSS-C--CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCC-c--cccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            111 1  11112222  2677777777653     5899998876543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.18  E-value=0.0023  Score=54.50  Aligned_cols=260  Identities=8%  Similarity=0.134  Sum_probs=160.6

Q ss_pred             CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      +..|.|.|+.++..+...+....   +.-.+|..+.++.-. ...+.|+|+++..       ..+...- ...|.-=.|-
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K~-------klks~~~-~e~VvfWkWi  114 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKWI  114 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTTE-------EEEEEEC-SSCCCEEEEE
T ss_pred             CCeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHhh-------hhcceec-CCCceEEEec
Confidence            34788999988776644333322   445688888887765 6799999999743       2222222 3466666787


Q ss_pred             eCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCCC
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRVA  239 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~  239 (388)
                      .+  +.|+..+ +..|+-|++... .+...+...... ....|..-..++ +.++++..+       -.|.+.+|.... 
T Consensus       115 s~--~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L-~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er-  188 (494)
T 1bpo_A          115 SL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-  188 (494)
T ss_dssp             ET--TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTT-
T ss_pred             CC--CeEEEEc-CCeeEEecccCCCCchhheecchhc-ccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccc-
Confidence            75  3454444 357999999753 455555432222 246677777787 555555432       247889999873 


Q ss_pred             CcceEEEecccCCeeEEEEccC---CCEEEEeeC---CCcEEEEECCCC---c-----eeeEeeeccCCCCCCCeEEEEe
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSD---DGTCRLFDIRTG---H-----QLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~-----~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                       +.-+.+.+|......+....+   ..+++.+..   .++++|.++...   .     ....+... .........++..
T Consensus       189 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp-pe~~~DFPvamqv  266 (494)
T 1bpo_A          189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQNDFPVAMQI  266 (494)
T ss_dssp             -CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC-TTSTTCCEEEEEE
T ss_pred             -cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC-cccccCceeEEEe
Confidence             466778888766554444321   123444433   278999998543   1     11111111 1122334678888


Q ss_pred             cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      ++.-..++.-+.-|.+++||+.++..+..-    +-...+|..-+-+.+..=++.....|.|.--.
T Consensus       267 s~kygviyviTK~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~  328 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC  328 (494)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred             cccCCEEEEEecCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence            998889999999999999999999998776    34455665555554444455555667665443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.13  E-value=0.0029  Score=53.69  Aligned_cols=241  Identities=11%  Similarity=0.046  Sum_probs=124.4

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-eeeEee---eCCccEEEEEECCC---CCEEEEeeC----C----C
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIK---LPCAWVMTCAFSPT---GQSVACGGL----D----S  131 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g  131 (388)
                      -.....|+|.|+|++++ +..+|.|.+++ .+++ .+..+.   ........++++|+   +..|+++..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999997544 55669999997 3444 111111   12345889999997   555554433    2    5


Q ss_pred             cEEEEeCCCCCCCCCCCc-eeEEec-ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCCc----
Q 016522          132 VCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL----  192 (388)
Q Consensus       132 ~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~----  192 (388)
                      .|..|+............ +...+. ........++|.|+| .++++.+.             .|.|.-++.....    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            677777664310000000 111111 111124568999997 45554332             2456666654320    


Q ss_pred             ---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCC---------------CCcceEEEecccC
Q 016522          193 ---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRV---------------ASRAVRTFHGHEG  251 (388)
Q Consensus       193 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~~~~~~~~  251 (388)
                         ....+.    .++ .....++|+|..+.++++-....   .|.+.....               ...++..+.....
T Consensus       185 pf~~~~i~a----~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          185 PFPNSPIWS----YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             SSTTCCEEE----ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCCcEEE----Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence               001110    122 34567889985555555432221   233332110               0012233311223


Q ss_pred             CeeEEEEc-------cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          252 DVNTVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       252 ~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      ....++|.       .+|.++++.-..+.|...++............. ......+..+++.|||.+.++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence            56778883       467777776677788888887532221111100 11133588999999997655543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.06  E-value=0.0024  Score=53.00  Aligned_cols=226  Identities=11%  Similarity=0.023  Sum_probs=115.1

Q ss_pred             eEEEEeC--CCcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeE
Q 016522           81 RIVSASQ--DGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR  152 (388)
Q Consensus        81 ~l~t~~~--dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~  152 (388)
                      +++.|+.  ...+.+||..+.+-...  +.........+.  .++..++.|+.+    ..+.+||..+..     +....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-----W~~~~   86 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-----WYSKL   86 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-----EEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-----EEECC
Confidence            4455554  35788899877553322  111112222222  366777888755    568888887643     11111


Q ss_pred             EecccccceEEEEEEeCCCceEEEeeCC------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          153 MLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                      .+......... +.. + +.+++.|+.+      ..+.+||+.+.+....-.  .  .....-.+++..  ++.+++.|+
T Consensus        87 ~~p~~r~~~~~-~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv~GG  157 (306)
T 3ii7_A           87 GPPTPRDSLAA-CAA-E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--M--LTQRCSHGMVEA--NGLIYVCGG  157 (306)
T ss_dssp             CCSSCCBSCEE-EEE-T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCccccceeE-EEE-C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--C--cCCcceeEEEEE--CCEEEEECC
Confidence            11111111122 222 3 4677777755      458899998876544321  1  111112222333  567777776


Q ss_pred             C---------CCceEEEECCCCCcceEEEecccCC--eeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeee
Q 016522          227 C---------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       227 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~  290 (388)
                      .         -..+.+||+.+.  ....+.....+  -.++... ++++++.|+.+     ..+.+||+.+.+-...-..
T Consensus       158 ~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          158 SLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             EESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred             CCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence            4         345788998755  22222211111  1122222 66777777654     3588999887643322111


Q ss_pred             ccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522          291 QHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (388)
                         +........+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       235 ---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          235 ---PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ---SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ---CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence               111111223333  66777777754     468899987754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.04  E-value=0.0023  Score=53.04  Aligned_cols=227  Identities=13%  Similarity=0.146  Sum_probs=112.6

Q ss_pred             CCCEEEEee-CC-----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEec
Q 016522          120 TGQSVACGG-LD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDI  188 (388)
Q Consensus       120 ~~~~l~~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~  188 (388)
                      ++..++.|+ .+     ..+.+||..+..-.     ....+....... +++. .+ +.+++.|+.+     ..+.+||+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~-~~~~-~~-~~l~v~GG~~~~~~~~~~~~~d~   85 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS-----FLPSITRKRRYV-ASVS-LH-DRIYVIGGYDGRSRLSSVECLDY   85 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEE-----ECCCCSSCCBSC-EEEE-ET-TEEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEE-----eCCCCChhhccc-cEEE-EC-CEEEEEcCCCCCccCceEEEEEC
Confidence            455666666 33     36888888764311     111111111111 1222 23 4677777754     46899999


Q ss_pred             CCCc---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-----ceEEEECCCCCcceEEEecccC--CeeEEEE
Q 016522          189 TTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVASRAVRTFHGHEG--DVNTVKF  258 (388)
Q Consensus       189 ~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~  258 (388)
                      .+..   ....-.  .  .....-.+++..  ++.+++.|+.++     .+.+||+.+. . ...+.....  .-.+++.
T Consensus        86 ~~~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~  157 (301)
T 2vpj_A           86 TADEDGVWYSVAP--M--NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID-Q-WSMLGDMQTAREGAGLVV  157 (301)
T ss_dssp             TCCTTCCCEEECC--C--SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-E-EEEEEECSSCCBSCEEEE
T ss_pred             CCCCCCeeEECCC--C--CCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-e-EEECCCCCCCcccceEEE
Confidence            8876   433321  1  111112222333  567888877543     5788887754 1 111211111  1112222


Q ss_pred             ccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEccc
Q 016522          259 FPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL  328 (388)
Q Consensus       259 ~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  328 (388)
                       -++++++.|+.+     ..+.+||+.+.+-...-..   +........+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       158 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          158 -ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             -ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC
Confidence             267777777754     4588999887654333111   111111222222  56777777764     4689999987


Q ss_pred             ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEecc
Q 016522          329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLH  372 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~  372 (388)
                      .+-...- .. .........+.+  ++++++.|+.++     .+.+|++
T Consensus       232 ~~W~~~~-~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          232 DSWTTVT-SM-TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             TEEEEEC-CC-SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CcEEECC-CC-CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            6543321 11 111112223333  677888887663     3455554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.02  E-value=0.003  Score=53.64  Aligned_cols=239  Identities=8%  Similarity=0.101  Sum_probs=122.2

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEe----eeCCccEEEEEECCC---CCEEEEee-C------
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAI----KLPCAWVMTCAFSPT---GQSVACGG-L------  129 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~------  129 (388)
                      -.....|+|.|+|+.|+.+...|.|++++.. +...   ..+    .........++++|+   +..|++.. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999834455667999999843 3221   111    112345789999996   44444442 2      


Q ss_pred             -CCcEEEEeCCCCCCCCCCCcee-EEec---ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCC
Q 016522          130 -DSVCSIFNLNSPTDKDGNLPVS-RMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG  191 (388)
Q Consensus       130 -dg~i~vw~~~~~~~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~  191 (388)
                       ...|..|++............. ..+.   .....-..+.|.|+| .++++.+.             .|.|.-+|....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             2356666665421110000011 1111   111123569999997 44444322             246766766532


Q ss_pred             c------------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCC-------------------
Q 016522          192 L------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVA-------------------  239 (388)
Q Consensus       192 ~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-------------------  239 (388)
                      .            ....+.    .++ .....++|+|..+.++++-.. ++.=.|.-+..+                   
T Consensus       175 ~p~~npf~~~~~~~~~i~a----~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWS----YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEE----ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCCcCCCCCCccEEE----EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            0            111110    122 346789999845555544221 111112111110                   


Q ss_pred             -----------CcceEEEecccCCeeEEEEcc-------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          240 -----------SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       240 -----------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                                 ..++..+..| ..+..+.|..       ++.++++.-..+.|...++..++........  ......+.
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~  326 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIR  326 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEE
T ss_pred             CcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCcee
Confidence                       0122223322 3566778763       4677777667788888888765433222111  11123589


Q ss_pred             EEEecCCCCEEEEE
Q 016522          302 SIAFSISGRLLFAG  315 (388)
Q Consensus       302 ~~~~~~~~~~l~~~  315 (388)
                      .+++.|+|.+.++.
T Consensus       327 ~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          327 DVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEE
Confidence            99999999855543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.98  E-value=0.006  Score=52.07  Aligned_cols=237  Identities=12%  Similarity=0.095  Sum_probs=145.1

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (388)
                      +.-.+|..+.||.=. ..++.|||+++...+..+...+. |..-.|-.+..+ +..+ +..|+-|+++...      .+.
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l-~lVT-~taVyHWsi~~~s------~P~  139 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTV-ALVT-DNAVYHWSMEGES------QPV  139 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEE-EEEC-SSEEEEEESSSSC------CCE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeE-EEEc-CCeeEEecccCCC------Cch
Confidence            344677777777655 57999999999999988887664 666677544433 3332 4579999997632      234


Q ss_pred             EEeccc----ccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC--CC
Q 016522          152 RMLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NS  219 (388)
Q Consensus       152 ~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  219 (388)
                      +.+..|    ...|..-..+++.+-++++|-      -.|.+.+|..+.+... .+     .+|......+.....  ..
T Consensus       140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~i-----eGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EE-----CCSEEEEEEEECTTCSSEE
T ss_pred             hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hh-----eeeeeeeEEEecCCCCCCc
Confidence            444443    345666666676654454442      3477889998766443 33     577666655554321  12


Q ss_pred             cEEEEeeC---CCceEEEECCCCC---cce--EE---Ee---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          220 RMFVSGSC---DSTARLWDTRVAS---RAV--RT---FH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       220 ~~l~~~~~---dg~i~i~d~~~~~---~~~--~~---~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      .+++.+..   .+.+++.++....   .+.  +.   +.   ...+-..++..++....++..+.-|.|.+||+.++.++
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence            34444433   3789999986431   111  11   11   11334567888888888999999999999999999988


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      ..-......     |-..+.+....=++.....|.|.-..++..
T Consensus       294 ~~nrIs~~~-----iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          294 YMNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEECCSSC-----EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eeecccCCc-----eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            776543322     443344333333444446666655555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.94  E-value=0.007  Score=51.35  Aligned_cols=254  Identities=12%  Similarity=0.048  Sum_probs=126.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEeeC-------
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSG-------  179 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~-------  179 (388)
                      .....++|.|+|+.++++...|.|++++....... ..................++++|+   +..+.++-..       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            34789999999994445566799999985431100 000000111122345688999985   4344444332       


Q ss_pred             CCeEEEEecCCC--c--eEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCCCC
Q 016522          180 DQTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS  240 (388)
Q Consensus       180 dg~v~i~d~~~~--~--~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~  240 (388)
                      ...|..|+....  .  ....+......  ........+.|.| ++.++++.+.             .|.|.-++....-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            235666766543  1  11111111110  1112245799999 6666666433             2456666655320


Q ss_pred             ------------cceEEEecccCCeeEEEEcc-CCCEEEEeeC-CCcEEEEECCCCceee----E---------eee---
Q 016522          241 ------------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD-DGTCRLFDIRTGHQLQ----V---------YYQ---  290 (388)
Q Consensus       241 ------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~----~---------~~~---  290 (388)
                                  .....-.++ .....++|+| ++.++++-.. ++.=.|.-+..+....    .         +..   
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        111112233 3467899999 5554443221 2111222222211100    0         000   


Q ss_pred             ccCC---------CCCCCeEEEEecC-------CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          291 QHGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       291 ~~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      ....         .+......++|..       +|.++++....+.|...++..++.......+ ......+..+++.||
T Consensus       255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCC
Confidence            0000         0112356777753       4667776667778888888765543321111 223457999999999


Q ss_pred             CCeEEEcc-CCCeE
Q 016522          355 GSALCTGS-WDTNL  367 (388)
Q Consensus       355 ~~~l~s~~-~dg~v  367 (388)
                      |.+.++.. .+|.|
T Consensus       334 G~lyv~td~~~g~I  347 (353)
T 2g8s_A          334 GYLYVLTDESSGEL  347 (353)
T ss_dssp             SCEEEEECSTTEEE
T ss_pred             CcEEEEEeCCCCEE
Confidence            98666533 45544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.91  E-value=0.0049  Score=51.00  Aligned_cols=185  Identities=12%  Similarity=0.089  Sum_probs=94.5

Q ss_pred             CceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-----ceEEEECCCCC
Q 016522          171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS  240 (388)
Q Consensus       171 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  240 (388)
                      +.+++.|+.+     ..+.+||+.+.+....-.  .  .....-.+++..  ++.+++.|+.++     .+.+||+.+. 
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-  134 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN--M--RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-  134 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCC--C--CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence            4677777754     358899998876544321  1  111111223333  567777777654     4778887654 


Q ss_pred             cceEEEecccCC--eeEEEEccCCCEEEEeeCC-------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522          241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  311 (388)
Q Consensus       241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (388)
                       ....+.....+  -.+++.. ++++++.|+.+       ..+.+||+.+.+-...-..   +........+.+  ++++
T Consensus       135 -~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i  207 (302)
T 2xn4_A          135 -EWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVL--NNLL  207 (302)
T ss_dssp             -EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEE
T ss_pred             -eEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEE--CCEE
Confidence             12222111111  1122222 56777777643       3588999887654332111   111111222222  5677


Q ss_pred             EEEEecC-----CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEeccc
Q 016522          312 LFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLHY  373 (388)
Q Consensus       312 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~~  373 (388)
                      ++.|+.+     ..+.+||..+.+-...- ...... ..-..+.+  ++++++.|+.++     .+.+|++.
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNMCR-RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSSCC-BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCC-CCCCcc-ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCC
Confidence            7777664     36999998876543221 111111 11122222  677888888664     36666653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.88  E-value=0.0087  Score=50.43  Aligned_cols=209  Identities=10%  Similarity=0.097  Sum_probs=118.0

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEe------------CCCcEEEEECCCCC-eeeEeeeC-------CccEEEEEEC
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSAS------------QDGRLIVWNALTSQ-KTHAIKLP-------CAWVMTCAFS  118 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~------------~dg~v~iwd~~~~~-~~~~~~~~-------~~~v~~~~~~  118 (388)
                      .++.+.+-....-+++..|+|..+++++            .+|.|.++|..+.. ....+...       .-....+.+.
T Consensus        41 ~C~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~  120 (355)
T 3sre_A           41 NCNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF  120 (355)
T ss_dssp             CEEECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEE
T ss_pred             CCEEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEE
Confidence            3444554333455677888875444431            68999999987421 22233221       1356677765


Q ss_pred             C--CCC-EEEEe-eC--CCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEEEEeCCCceEEEee-------------
Q 016522          119 P--TGQ-SVACG-GL--DSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSS-------------  178 (388)
Q Consensus       119 ~--~~~-~l~~~-~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-------------  178 (388)
                      +  ++. +|+++ ..  +..|.+|+++...   ........+.+. -...+++.+.++| .+.++..             
T Consensus       121 ~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~---~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~  196 (355)
T 3sre_A          121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEE---KSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEM  196 (355)
T ss_dssp             ECTTCCEEEEEEECSTTCCEEEEEEEETTT---TEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHH
T ss_pred             ECCCCcEEEEEEECCCCCCeEEEEEEECCC---CEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchh
Confidence            5  343 34443 22  5678888877532   122233333332 2457889999987 4455432             


Q ss_pred             ----CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--eEEEecccCC
Q 016522          179 ----GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGD  252 (388)
Q Consensus       179 ----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~  252 (388)
                          ..|.|..+|..  +.. ..     ...-...+.++|+|++..++++-+..+.|..|++......  .+.+ ...+.
T Consensus       197 ~~~~~~g~vyr~d~~--~~~-~~-----~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~  267 (355)
T 3sre_A          197 HLGLAWSFVTYYSPN--DVR-VV-----AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL  267 (355)
T ss_dssp             HTTCCCEEEEEECTT--CCE-EE-----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred             hccCCccEEEEEECC--eEE-Ee-----ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence                13556666653  222 22     1223457899999944455566667789999998743221  1233 23456


Q ss_pred             eeEEEEcc-CCCEEEEeeCC-CcEEEEECC
Q 016522          253 VNTVKFFP-DGNRFGTGSDD-GTCRLFDIR  280 (388)
Q Consensus       253 i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~  280 (388)
                      .-.+++.+ +|++.+++..+ +.|..|+..
T Consensus       268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            67889998 58877766533 355555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.84  E-value=0.0034  Score=52.14  Aligned_cols=228  Identities=13%  Similarity=0.125  Sum_probs=113.9

Q ss_pred             CCCeEEEEeCC----CcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeC----C-----CcEEEEeCCCCC
Q 016522           78 ERNRIVSASQD----GRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGL----D-----SVCSIFNLNSPT  142 (388)
Q Consensus        78 ~~~~l~t~~~d----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~vw~~~~~~  142 (388)
                      ++..++.|+.+    ..+.+||..+.+-...  +.........+.  .++.+++.|+.    +     ..+.+||..+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45566666632    3688889876553322  111111112222  26677777775    2     468888887643


Q ss_pred             CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522          143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS  217 (388)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (388)
                      -.     ....+......... +.. + +.+++.|+.+     ..+.+||+.+.+....-.  .  .....-.+++..  
T Consensus       102 W~-----~~~~~p~~r~~~~~-~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~--p~~r~~~~~~~~--  167 (308)
T 1zgk_A          102 WS-----PCAPMSVPRNRIGV-GVI-D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--M--LTRRIGVGVAVL--  167 (308)
T ss_dssp             EE-----ECCCCSSCCBTCEE-EEE-T-TEEEEECCEETTEECCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--
T ss_pred             Ee-----ECCCCCcCccccEE-EEE-C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCC--C--CccccceEEEEE--
Confidence            11     11111111111122 222 3 3666776643     358889998775443321  1  111111223333  


Q ss_pred             CCcEEEEeeCC-----CceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCce
Q 016522          218 NSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQ  284 (388)
Q Consensus       218 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  284 (388)
                      ++.+++.|+.+     ..+.+||+.+.  ....+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56788887765     45888888754  1111111   1111122222  66777777764     4689999887653


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK  330 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  330 (388)
                      ......   +........+.  -++++++.|+.+     ..+.+||+.+.+
T Consensus       244 ~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          244 TFVAPM---KHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EECCCC---SSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EECCCC---CCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            322111   11111112222  256777777654     357888887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.82  E-value=0.011  Score=49.65  Aligned_cols=238  Identities=10%  Similarity=0.038  Sum_probs=123.8

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ..+.++.|.+.+..+++| ..|.| +...+.++    .+..... .......+.++.+.+  +..++ ++.+|.|.. ..
T Consensus        36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~----tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~  105 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQ----TWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TT  105 (327)
T ss_dssp             SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTS----SCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ES
T ss_pred             CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCC----CCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-EC
Confidence            468899998777777754 56654 33333322    1111110 111244678888875  24444 455665543 22


Q ss_pred             CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      ..++.-......  ......+..+.+.+ ++..++++ .+|.|.. ..+.+..-..........+..+.+.|++.+++.+
T Consensus       106 DgG~tW~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          106 DGGQSWSQIPLD--PKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             STTSSCEECCCC--TTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE
T ss_pred             CCCCCceECccc--cCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE
Confidence            233332222110  12234567777765 55566555 4554422 1222212222223445678899999998877766


Q ss_pred             eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  348 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  348 (388)
                      ...+..+-.|- .+..-.....    .....+..+.+.+++..+++ +.+|.+++.+...++....+..........+.+
T Consensus       181 ~~G~~~~S~d~-gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          181 SRGSFYSTWEP-GQTAWEPHNR----TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             TTSSEEEEECT-TCSSCEEEEC----CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred             CCCcEEEEeCC-CCCceeECCC----CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence            54333333332 1222222211    11235888999998876654 467887776533355544432110012345889


Q ss_pred             EEECCCCCeEEEccCCCeEEE
Q 016522          349 LGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      +++.+++.+++++. +|.|..
T Consensus       255 v~~~~~~~~~~~g~-~g~i~~  274 (327)
T 2xbg_A          255 LAYRTPNEVWLAGG-AGALLC  274 (327)
T ss_dssp             EEESSSSCEEEEES-TTCEEE
T ss_pred             EEecCCCEEEEEeC-CCeEEE
Confidence            99998887666654 676643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.78  E-value=0.036  Score=54.70  Aligned_cols=177  Identities=12%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEee---CCCCcEEEEee----------CCCceEEEECCCCCcceEEEec
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS---GSNSRMFVSGS----------CDSTARLWDTRVASRAVRTFHG  248 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~  248 (388)
                      .|++.|..+.+.+..+.    ......+.+++..   .....++++|+          ..|.|.+|++...+-....-..
T Consensus       808 ~i~lidp~t~~~i~~~~----l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~  883 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQ----FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE  883 (1158)
T ss_dssp             EEEEEETTTCCEEEEEE----CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEe----CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence            46777777666655553    2334455555543   22357888876          3578999998733111122223


Q ss_pred             ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc--
Q 016522          249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT--  326 (388)
Q Consensus       249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--  326 (388)
                      ..+++++++-. +|. |++|- ..+|++|++...+.+..-.... .    .+..+.....++++++|..-..|.++..  
T Consensus       884 v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~----~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~  955 (1158)
T 3ei3_A          884 VKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHY-N----NIMALYLKTKGDFILVGDLMRSVLLLAYKP  955 (1158)
T ss_dssp             ESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEEC-C----CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred             cCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeecc-c----cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence            46788887744 454 44443 4689999998765444111111 1    1333333345789999988887777654  


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ..++....-.   ......++++.+-.++ .++.+..+|.+.+..+..
T Consensus       956 ~~~~L~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          956 MEGNFEEIAR---DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTTEEEEEEE---CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             CCCeEEEEEe---ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            3343333221   3455678888886554 678899999999887544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.78  E-value=0.011  Score=48.86  Aligned_cols=226  Identities=13%  Similarity=0.150  Sum_probs=112.4

Q ss_pred             CCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC----CeEEEEecCCCceE
Q 016522          121 GQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRT  194 (388)
Q Consensus       121 ~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~  194 (388)
                      +.+++.|+.  ...+.+||..+..-.     ....+........ ++. -+ +.+++.|+.+    ..+.+||+.+.+..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~~-~~~-~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWT-----DIRCPFEKRRDAA-CVF-WD-NVVYILGGSQLFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEE-----ECCCCSCCCBSCE-EEE-ET-TEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEe-----cCCCCCcccceeE-EEE-EC-CEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence            345556654  357888888774311     1111111111111 222 23 4677777754    57889999887654


Q ss_pred             EEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEE
Q 016522          195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFG  266 (388)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~  266 (388)
                      ..-..    .....-.+++..  ++.+++.|+.+      ..+.+||+.+. . ...+.....  .-.+++. -++++++
T Consensus        84 ~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~-~~~~iyv  154 (306)
T 3ii7_A           84 SKLGP----PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVE-ANGLIYV  154 (306)
T ss_dssp             EEECC----SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred             ECCCC----CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEE-ECCEEEE
Confidence            43321    111111222222  56788888765      45888998754 1 222211111  1112222 2666777


Q ss_pred             EeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccceEE
Q 016522          267 TGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVV  332 (388)
Q Consensus       267 ~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  332 (388)
                      .|+.         -..+.+||+.+.+-...-..   +.....-..+.+  ++++++.|+.+     ..+.+||+.+.+-.
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence            7764         34588999887653332211   111111122222  66677777654     36899998876533


Q ss_pred             eeccCCCCCcCCCeeEEEECCCCCeEEEccCC-----CeEEEecc
Q 016522          333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVSLH  372 (388)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~  372 (388)
                      .. ... ........++.+  ++++++.|+.+     ..+.+|++
T Consensus       230 ~~-~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          230 MV-SPM-PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EC-CCC-SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             EC-CCC-CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            22 111 111122233333  67788888754     34555554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.76  E-value=0.03  Score=53.02  Aligned_cols=279  Identities=11%  Similarity=0.040  Sum_probs=145.8

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      ...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .+| .|..++.+ -+..++..+..    
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~----  132 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK----  132 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC----
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe----
Confidence            3468898877766 566666665 788998765432211112234666654 344 45556655 57788876532    


Q ss_pred             CCceeEEec----ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522          147 NLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       147 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                         ......    .....|.++....++ . +..|+..| |..+|..++.................|.++...+ ++..|
T Consensus       133 ---~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~l  205 (758)
T 3ott_A          133 ---LTSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCV  205 (758)
T ss_dssp             ---EEEECHHHHCCSCSCEEEEEECTTC-C-EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEE
T ss_pred             ---EEEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEE
Confidence               111100    112457777666554 3 44555544 7788887765432211000001123478888776 44544


Q ss_pred             EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC---CCCCCC
Q 016522          223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---ENEIPH  299 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~  299 (388)
                      ..|+. +-+..+|..+. ............|.++...++|.+.+ |+.+ -+.+++..+.... .+.....   .-....
T Consensus       206 Wigt~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~  280 (758)
T 3ott_A          206 WIGTE-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNI  280 (758)
T ss_dssp             EEEEE-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSC
T ss_pred             EEEEC-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCe
Confidence            45554 45888887654 22111111234588888887776554 4444 5788887665432 2211110   112235


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      |.++..+.+|.+- +|+..| +.++.....-....... ........|.++.-..+|.+.+ |+.+|..++
T Consensus       281 i~~i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~~  348 (758)
T 3ott_A          281 IWNIFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIRF  348 (758)
T ss_dssp             EEEEEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEEE
T ss_pred             EEEEEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCcceee
Confidence            8888888777644 454556 55543322111111100 0011234688998888887544 455564443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.74  E-value=0.032  Score=52.86  Aligned_cols=282  Identities=11%  Similarity=0.061  Sum_probs=150.4

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+| +.+++..+..      
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~------  262 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTP------  262 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTTSC------
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCc------
Confidence            4888888777765555554 35788887765443222223445888888888876654 4444 7777765532      


Q ss_pred             ceeEEe-------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCC
Q 016522          149 PVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       149 ~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~  219 (388)
                       .....       .-....|.++....+|  .|-.|+..| +.++... .. ...+...  ........|.++.... ++
T Consensus       263 -~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~-~g  335 (758)
T 3ott_A          263 -LQHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDS-KG  335 (758)
T ss_dssp             -CEEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT-TC
T ss_pred             -EEEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcC-CC
Confidence             11110       0123457777766654  355666666 5444332 21 1111100  0012234688887765 55


Q ss_pred             cEEEEeeCCCceEEEECCCCC-cceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522          220 RMFVSGSCDSTARLWDTRVAS-RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  291 (388)
                      .+. .|+.+| +..++..+.. .....+..       ....|.++.-.+++++. .|+ ++-|..||..+++........
T Consensus       336 ~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~  411 (758)
T 3ott_A          336 FYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVD  411 (758)
T ss_dssp             CEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEEC
T ss_pred             CEE-EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCC
Confidence            444 445554 6666655321 11222221       12357888877777644 455 456899998776443222111


Q ss_pred             c-CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-----eEEe---eccCCCCCcCCCeeEEEECCCCCeEE-Ec
Q 016522          292 H-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----KVVL---NLGSLQNSHEGRITCLGLSADGSALC-TG  361 (388)
Q Consensus       292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~-s~  361 (388)
                      . .......|.++...++|. |.+|+..+-|..+|..+.     ....   .+.....-....|.++...++|.+.+ .|
T Consensus       412 ~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~  490 (758)
T 3ott_A          412 NTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY  490 (758)
T ss_dssp             CC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET
T ss_pred             CcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEcc
Confidence            1 001223478888777765 555666667999986531     1111   11000011234589999999998665 35


Q ss_pred             cCCCeEEEecc
Q 016522          362 SWDTNLKVSLH  372 (388)
Q Consensus       362 ~~dg~v~iw~~  372 (388)
                      +.+| |..+++
T Consensus       491 t~~G-l~~~d~  500 (758)
T 3ott_A          491 NNKG-IDKINP  500 (758)
T ss_dssp             TCSS-EEEEET
T ss_pred             CCCC-cEEEeC
Confidence            5555 555554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.66  E-value=0.018  Score=47.85  Aligned_cols=225  Identities=9%  Similarity=0.050  Sum_probs=112.6

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeee--CCccEEEEEECCCCCEEEEeeC-----C------CcEEEEeCCCCCCCCCC
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGL-----D------SVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~vw~~~~~~~~~~~  147 (388)
                      +++.|+  ..+.+||..+.+-.. ...  +.......+...++..++.|+.     .      ..+.+||..+..-    
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE----
Confidence            344555  579999988776432 222  2223333344457788888873     1      1267788776431    


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCC--------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                       .....+....... +++.. + +.+++.|+.+        ..+.+||+.+.+-...-.  .  .....-.+++..  ++
T Consensus        80 -~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~  149 (315)
T 4asc_A           80 -LGMPPLPSPRCLF-GLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--L--PYVVYGHTVLSH--MD  149 (315)
T ss_dssp             -EECCCBSSCEESC-EEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--TT
T ss_pred             -EECCCCCcchhce-eEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--C--CCcccceeEEEE--CC
Confidence             1111111111111 12222 2 4666777632        458899998875433221  1  111112223333  56


Q ss_pred             cEEEEeeC-C-----CceEEEECCCCCcceEEEeccc---CCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCcee
Q 016522          220 RMFVSGSC-D-----STARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQL  285 (388)
Q Consensus       220 ~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  285 (388)
                      .+++.|+. +     ..+.+||+.+.  ....+....   ....++.+  ++++++.|+.++     .+.+||+.+.+-.
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            78888876 2     36888998754  111111111   11122222  667777777654     5888998876443


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccceE
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKV  331 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~  331 (388)
                      ..-..   +........+.+  ++++++.|+.+              ..+.+||+.+.+-
T Consensus       226 ~~~~~---p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          226 PFEAF---PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EECCC---SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             ECCCC---CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            32211   111111222222  56777777653              2467888776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.64  E-value=0.019  Score=48.99  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=99.5

Q ss_pred             CCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce---------
Q 016522          218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ---------  284 (388)
Q Consensus       218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------  284 (388)
                      ++.-++.+- ++.||.-++... ...+.+...    -..|..+..+|+|++||..+. ..|.|-.+..+..         
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            334444333 467887777654 345555543    236888999999999998865 5788988873321         


Q ss_pred             ---eeEeeeccC-CCCCCCeEEEEecCCC---CEEEEEecCCcEEEEEcccc--eEEeeccCCC-----CCcCCCeeEEE
Q 016522          285 ---LQVYYQQHG-ENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQ-----NSHEGRITCLG  350 (388)
Q Consensus       285 ---~~~~~~~~~-~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~~~v~~~~  350 (388)
                         ...+..... .....+|..+.|+|-+   ..|++-..|+.|++||+...  ++. .+....     ......|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence               112222111 1124579999999964   58999999999999999752  112 222110     12336799999


Q ss_pred             ECCCCCeEEEcc--CCCeEEEecccee
Q 016522          351 LSADGSALCTGS--WDTNLKVSLHYYI  375 (388)
Q Consensus       351 ~~~~~~~l~s~~--~dg~v~iw~~~~~  375 (388)
                      |.+++-.|...+  .+|.|+-..+...
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAlcP~LP  213 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAFYPFLP  213 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEESSCCC
T ss_pred             EcCCCcEEEEEecCCCCCEEEECCCCc
Confidence            999888777744  8898887766543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.63  E-value=0.021  Score=47.86  Aligned_cols=248  Identities=15%  Similarity=0.131  Sum_probs=128.4

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--e----eeCCccEEEEEECCC---CCEEEEe--
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--I----KLPCAWVMTCAFSPT---GQSVACG--  127 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~--  127 (388)
                      .+..+...-.....|+|.|+|+++++--..|.|++++..+++....  +    .........++++|+   +..|++.  
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            4444444555788999999998777765589999998665554221  1    123456899999995   3444432  


Q ss_pred             -eCCCcEEEEeCCCCCC---CCCCCc-eeEEec-ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEec
Q 016522          128 -GLDSVCSIFNLNSPTD---KDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDI  188 (388)
Q Consensus       128 -~~dg~i~vw~~~~~~~---~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~  188 (388)
                       ..++.|.-|.+.....   ...... +...+. .....-..|.|.|+| .++++.+.             .|.|.-.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence             2345666666654221   111111 111121 111234568999997 45555332             355555555


Q ss_pred             CCCc-------eEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC-----------------Ccce
Q 016522          189 TTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-----------------SRAV  243 (388)
Q Consensus       189 ~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------~~~~  243 (388)
                      ....       ....+.    .++ .....++|+| ++.++++-. .++.=.|.-+..+                 ..++
T Consensus       182 dG~ip~~nPf~~~~i~a----~G~-RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYS----YGH-RNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             TSSBCTTCSSTTCCEEE----BCC-SBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred             CCCccCCCCCCCCeEEe----eCC-CCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence            4320       001110    233 3456789998 666655432 2221222222111                 1123


Q ss_pred             EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE
Q 016522          244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (388)
                      ..+..+......++|. ++..++..-..+.|....+............. ......+..++..|||.++++.
T Consensus       256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEE
T ss_pred             EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEE
Confidence            3333232355677776 45556655556667666665543211100000 1123458889999988755554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.59  E-value=0.025  Score=47.50  Aligned_cols=245  Identities=11%  Similarity=0.068  Sum_probs=125.8

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE----ecccccceEEEEEEeC---CCceEEEe--e
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM----LSGHKGYVSCCQYVPD---EDTHLITS--S  178 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~--~  178 (388)
                      .-.....++|.|+|+++++--..|.|++++...+.     ......    ..........|+++|+   +..+.++-  .
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-----~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-----KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-----EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            34557899999999977776558999988765432     111111    1223456789999985   22333322  2


Q ss_pred             CCCeEEEEecCCCc--------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECC
Q 016522          179 GDQTCVLWDITTGL--------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTR  237 (388)
Q Consensus       179 ~dg~v~i~d~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~  237 (388)
                      .++.|.-|....+.        ....+. ............|.|.| ++.++++.+.             .|.|.-++..
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~-~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFR-GIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEE-EECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEE-cCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            45567667665421        111111 11111222346789998 6777776542             3455555544


Q ss_pred             CCC-------cceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEee---eccCCC----------C
Q 016522          238 VAS-------RAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYY---QQHGEN----------E  296 (388)
Q Consensus       238 ~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~----------~  296 (388)
                      ..-       .....-.+|. ....++|+|++.+.++=. .|+.=.|--+..+....--.   ......          .
T Consensus       183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence            210       0111222443 356899999887655532 23322222222222110000   000000          0


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      ......++|. +|..+......+.|....+...........+..+....+.+|+..|||.++++.
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            0134567775 455666666666787777765543211111113445789999999999876664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.57  E-value=0.013  Score=50.01  Aligned_cols=157  Identities=13%  Similarity=0.108  Sum_probs=102.0

Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC----CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC----
Q 016522           76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN----  147 (388)
Q Consensus        76 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----  147 (388)
                      +.+|..++.+- ++.||.-++......+.+...    -..+..+..+|+|++||..+. ..|.|..+..+......    
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            44666666664 468888888755555566554    225788999999999999865 47899998854322211    


Q ss_pred             --CceeEEecc------cccceEEEEEEeCCC--ceEEEeeCCCeEEEEecCCCceEE-Eeeccc----ccCCccCeEEE
Q 016522          148 --LPVSRMLSG------HKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRTS-VFGGEF----QSGHTADVLSV  212 (388)
Q Consensus       148 --~~~~~~~~~------~~~~v~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~----~~~~~~~i~~~  212 (388)
                        .. .+.+.-      ...+|..+.|+|-+.  ..|++-..|+.|++||+....... .+....    .......|.++
T Consensus       107 ~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred             cccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence              11 122221      246799999999753  379999999999999998632111 221110    02233678899


Q ss_pred             EeeCCCCcEEEEee--CCCceEEEEC
Q 016522          213 SISGSNSRMFVSGS--CDSTARLWDT  236 (388)
Q Consensus       213 ~~~~~~~~~l~~~~--~dg~i~i~d~  236 (388)
                      +|.+ ++-.|...+  .+|.|+-.-.
T Consensus       186 ~Fg~-~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          186 EFSK-DGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             EECT-TSSCEEEEECTTSCEEEEESS
T ss_pred             EEcC-CCcEEEEEecCCCCCEEEECC
Confidence            9998 666566644  7787766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.55  E-value=0.015  Score=57.43  Aligned_cols=258  Identities=9%  Similarity=0.156  Sum_probs=144.3

Q ss_pred             CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        87 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      ....|.|.|+.++..+...+..   .-+.-.+|..+.++.-. ...+.|+++++..       ...... ...+|.-=.|
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------klks~~-~~e~VvfWkW  113 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHT-MTDDVTFWKW  113 (1630)
T ss_pred             CCceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhh-------hhcccc-cCCCceEEEe
Confidence            3347888998887655332221   22344678887777664 6789999998743       111111 1345655566


Q ss_pred             EeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCC
Q 016522          167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRV  238 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~  238 (388)
                      ...  +.|+..+. ..|.-|++... .+...+.... .-....|..-..++ +.++++..+       -.|.+.+|....
T Consensus       114 is~--~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~-~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          114 ISL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             cCC--CeeEEEcC-CeEEEeccCCCCccHHHHhcch-hcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc
Confidence            654  34444433 56999999743 3333332111 11145677777777 555555322       358899999874


Q ss_pred             CCcceEEEecccCCeeEEEEc--cC-CCEEEEeeC---CCcEEEEECCCC---ceee------EeeeccCCCCCCCeEEE
Q 016522          239 ASRAVRTFHGHEGDVNTVKFF--PD-GNRFGTGSD---DGTCRLFDIRTG---HQLQ------VYYQQHGENEIPHVTSI  303 (388)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~~~~~~~~~~i~~~  303 (388)
                        +..+.+.||......+...  +. ...++.+..   .+.++|.++...   .+..      .+...  ........++
T Consensus       189 --~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~--~~~~Dfpv~~  264 (1630)
T 1xi4_A          189 --KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--EAQNDFPVAM  264 (1630)
T ss_pred             --ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc--ccccCcceEE
Confidence              3455667776655444432  11 223332222   368999988543   1111      11111  1112335677


Q ss_pred             EecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522          304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV  369 (388)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i  369 (388)
                      ..++.-..++.-+.-|.+++||+.++..+..-    +-...+|...+-+....=++.....|.|.-
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~----ris~~~iF~~~~~~~~~g~~~vnr~G~vl~  326 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS  326 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchhhhhc----cccCCceEEeccCCCCCceEEEcCCceEEE
Confidence            78888888999999999999999999887654    333444544444432222333334555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.54  E-value=0.013  Score=48.62  Aligned_cols=228  Identities=9%  Similarity=0.050  Sum_probs=111.2

Q ss_pred             CCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC----C-----CeEE
Q 016522          118 SPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----D-----QTCV  184 (388)
Q Consensus       118 ~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~v~  184 (388)
                      .-++..++.|+.+    ..+.+||..+..-.     ....+....... +++.. + +.+++.|+.    +     ..+.
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~   93 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWL-----RLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALD   93 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEE-----ECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEe-----ECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEE
Confidence            3356666766632    36788887764311     110111111111 22222 3 466777765    2     3588


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcceEEEec---ccCCeeEE
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTV  256 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~  256 (388)
                      +||+.+.+....-.  ....  ..-.+++..  ++.+++.|+.+     ..+.+||+.+..  ...+..   ....-..+
T Consensus        94 ~~d~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~  165 (308)
T 1zgk_A           94 CYNPMTNQWSPCAP--MSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVA  165 (308)
T ss_dssp             EEETTTTEEEECCC--CSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEE
T ss_pred             EECCCCCeEeECCC--CCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEE
Confidence            89988875443321  1111  111222232  56777777654     357888887541  111111   11111222


Q ss_pred             EEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEc
Q 016522          257 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT  326 (388)
Q Consensus       257 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~  326 (388)
                      .+  ++.+++.|+.+     ..+.+||+.+.+-...-..   +........+.+  ++++++.|+.+     ..+.+||+
T Consensus       166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          166 VL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             EE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             EE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence            22  66777777754     4588999877643322111   111111222233  66777777664     46999998


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEecc
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLH  372 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~  372 (388)
                      .+.+-... ...... ......+.+  ++++++.|+.++     .+.+|++
T Consensus       239 ~~~~W~~~-~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          239 ETETWTFV-APMKHR-RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             TTTEEEEC-CCCSSC-CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCcEEEC-CCCCCC-ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence            87654332 111111 111222222  577888887553     3455554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.51  E-value=0.023  Score=47.24  Aligned_cols=215  Identities=9%  Similarity=0.033  Sum_probs=103.0

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----C------CeEEEEecCCC
Q 016522          123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----D------QTCVLWDITTG  191 (388)
Q Consensus       123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~v~i~d~~~~  191 (388)
                      +++.|+  ..+..||..+..     +.. ..+.............. ++.+++.|+.     .      ..+..||+.+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~-----W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANE-----CYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEET--TEEEEEETTTTE-----EEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcC--CceEEECCCCCe-----Eec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            344555  568899988744     111 11111111111112222 3467777773     1      12778898887


Q ss_pred             ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccC--CeeEEEEccC
Q 016522          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPD  261 (388)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~  261 (388)
                      +....-  ..  .....-.+++..  ++.+++.|+.+        ..+.+||+.+..  .........  .-.+++. -+
T Consensus        78 ~W~~~~--~~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~  148 (315)
T 4asc_A           78 EWLGMP--PL--PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM  148 (315)
T ss_dssp             EEEECC--CB--SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET
T ss_pred             eEEECC--CC--CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-EC
Confidence            643321  11  111111223333  56777777742        358888887541  111111111  1112222 36


Q ss_pred             CCEEEEeeC-C-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccce
Q 016522          262 GNRFGTGSD-D-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (388)
Q Consensus       262 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (388)
                      +++++.|+. +     ..+.+||+.+.+-......   +.....-..+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            677777775 2     4689999887643322111   111111122222  667777777654     58899987764


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      -...- .. .........+.+  ++++++.|+.+
T Consensus       224 W~~~~-~~-p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          224 WAPFE-AF-PQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEEEC-CC-SSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             EEECC-CC-CCcccceeEEEE--CCEEEEECCcc
Confidence            33221 11 111111223333  56777888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.50  E-value=0.028  Score=47.66  Aligned_cols=237  Identities=9%  Similarity=-0.020  Sum_probs=112.1

Q ss_pred             CCCeEEEEeC-CCcEEEEECCC--CCe--eeEee-eCCccEEEEEECCCCCEEEEeeC-C---------CcEEEEeCCCC
Q 016522           78 ERNRIVSASQ-DGRLIVWNALT--SQK--THAIK-LPCAWVMTCAFSPTGQSVACGGL-D---------SVCSIFNLNSP  141 (388)
Q Consensus        78 ~~~~l~t~~~-dg~v~iwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~vw~~~~~  141 (388)
                      ++..++.|+. ...+.+||..+  .+-  +..+. ........+.+  ++++++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5556666654 34788889864  222  11112 11111222222  5777777776 2         46888988774


Q ss_pred             CCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCC---------------------------------------C
Q 016522          142 TDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGD---------------------------------------Q  181 (388)
Q Consensus       142 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d---------------------------------------g  181 (388)
                      .-     ....... ..... .+++. .+ +.+++.|+.+                                       .
T Consensus        97 ~W-----~~~~~~~p~~r~~-~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (357)
T 2uvk_A           97 SW-----VKLMSHAPMGMAG-HVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK  168 (357)
T ss_dssp             EE-----EECSCCCSSCCSS-EEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred             cE-----EECCCCCCccccc-ceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence            31     1111111 11111 11222 33 4677777754                                       5


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCe-EEEEeeCCCCcEEEEeeC------CCceEEEECCCCCcceEEEeccc---C
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADV-LSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHE---G  251 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~---~  251 (388)
                      .+.+||+.+.+....-..    ...... .+++..  ++.+++.|+.      ...+..||++........+....   .
T Consensus       169 ~v~~yd~~~~~W~~~~~~----p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          169 FLLSFDPSTQQWSYAGES----PWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             EEEEEETTTTEEEEEEEC----SSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             cEEEEeCCCCcEEECCCC----CCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            789999988765444211    111111 233333  5677777764      34577787632212222222111   1


Q ss_pred             CeeEEEEccCCCEEEEeeCC----------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522          252 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  309 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (388)
                      .....+...++++++.|+.+                      ..+.+||+.+.+-...-.... .  ...-.+  ...++
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~--r~~~~~--~~~~~  317 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-G--RAYGVS--LPWNN  317 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-C--CBSSEE--EEETT
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-C--ccccee--EEeCC
Confidence            11111222366777777632                      257789987654333221111 1  111122  23467


Q ss_pred             CEEEEEecCC------cEEEEEcccceEEeec
Q 016522          310 RLLFAGYSNG------DCYVWDTLLAKVVLNL  335 (388)
Q Consensus       310 ~~l~~~~~dg------~i~i~d~~~~~~~~~~  335 (388)
                      ++++.|+.++      .|.++++++++.+...
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            7777887643      3566677776655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.39  E-value=0.015  Score=57.39  Aligned_cols=238  Identities=11%  Similarity=0.094  Sum_probs=134.7

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM  153 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  153 (388)
                      -.+|..+.||.=. ..++.|||+++...+..+..... |..-.|-.....-+++  +..|.-|++.+...      +.+.
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~------P~k~  141 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT--DNAVYHWSMEGESQ------PVKM  141 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCeeEEEc--CCeEEEeccCCCCc------cHHH
Confidence            3566666666554 57999999999988888777554 7777776554433332  45799999975332      2222


Q ss_pred             eccc----ccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEee--CCCCcE
Q 016522          154 LSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRM  221 (388)
Q Consensus       154 ~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~  221 (388)
                      +..|    ...|..-..+++..-++++|-      -.|.+.+|..+.+... .+     .+|......+...  +....+
T Consensus       142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~i-----egha~~F~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEESTL  215 (1630)
T ss_pred             HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hh-----hHhHhhhheeccCCCCCCceE
Confidence            2222    456666667777655555543      4578888887765332 22     3444444333332  111223


Q ss_pred             EEEeeC---CCceEEEECCCC---Ccc-----eEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          222 FVSGSC---DSTARLWDTRVA---SRA-----VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       222 l~~~~~---dg~i~i~d~~~~---~~~-----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      ++.+..   .+.+++.++...   ..+     +..+..   ...-..++..++....+...+.-|.+.+||+.++.++..
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            332222   368899888543   011     111111   123345677788777888889999999999999988765


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      -.....     +|-..+.+....=++.....|.|.-..+.....+
T Consensus       296 ~ris~~-----~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          296 NRISGE-----TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             ccccCC-----ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            443222     1333333322222333335666655555444433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.35  E-value=0.049  Score=45.34  Aligned_cols=227  Identities=12%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCEEEEeeC----CC-------cEEEEeCCCCCCCCCC
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGL----DS-------VCSIFNLNSPTDKDGN  147 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~vw~~~~~~~~~~~  147 (388)
                      .++.|+.  .+..||..+.+-.. ....  ...........++..++.|+.    ++       .+.+||..+..-.   
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~---   91 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---   91 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE---
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE---
Confidence            3444443  47889988766433 2221  122223334557788888873    12       1677887664311   


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCC-------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                        ....+....... +++.. + +.+++.|+.+       ..+.+||+.+.+....-..    .....-.+++..  ++.
T Consensus        92 --~~~~~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~--~~~  160 (318)
T 2woz_A           92 --GLPPLPSARCLF-GLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL----PIKVYGHNVISH--NGM  160 (318)
T ss_dssp             --ECSCBSSCBCSC-EEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC----SSCEESCEEEEE--TTE
T ss_pred             --ECCCCCcccccc-ceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC----CCcccccEEEEE--CCE
Confidence              111111111111 12222 3 4667777654       3578899888765443211    111111122222  667


Q ss_pred             EEEEeeC------CCceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeE
Q 016522          221 MFVSGSC------DSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV  287 (388)
Q Consensus       221 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  287 (388)
                      +++.|+.      -..+.+||+.+.  ....+.....  .-.+++.. ++++++.|+.+     ..+.+||+.+.+-...
T Consensus       161 iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          161 IYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             EEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred             EEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence            7777764      235889998754  1222211111  11122222 66777777653     3577899887653332


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccceEE
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVV  332 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~  332 (388)
                      -..   +........+.  .++++++.|+.+              ..+.+||+.+.+-.
T Consensus       238 ~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          238 TEF---PQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             CCC---SSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             CCC---CCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            111   11111112222  356777777653              35888888776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.024  Score=47.35  Aligned_cols=200  Identities=14%  Similarity=0.023  Sum_probs=103.9

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEE--CC-CCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEe
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAF--SP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRML  154 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (388)
                      ..++.++.||.|.-.|..+|+....++... .++....-  .+ ++..++.. +.||.+..++..++..     ......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-----~~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-----KLPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-----EEEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-----Eeeecc
Confidence            478899999999999999999988887651 22222110  11 22333333 5799999999876431     111111


Q ss_pred             cc--cccceEE---EEE-Ee---CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cCeEEEEee----CCCC
Q 016522          155 SG--HKGYVSC---CQY-VP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSIS----GSNS  219 (388)
Q Consensus       155 ~~--~~~~v~~---~~~-~~---~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~----~~~~  219 (388)
                      ..  ...++..   ... .+   ..+..+++|+.+|.+...|+.+|+.+..+.......+-  ....|....    ...+
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence            10  1111111   000 00   01356899999999999999999999998532111100  000011110    0123


Q ss_pred             cEEEEeeCCCceEEEECCCCCcc---eEEEecccCC--e-eEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522          220 RMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGD--V-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ  286 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~--i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  286 (388)
                      ..++.+..+..+.+.+ +++..-   ..........  + ..-..+.++.+ +.++.||.|.-+|..++..+.
T Consensus       166 ~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             CEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            4566677677777766 333110   0111111000  0 00001124555 457888999999988887665

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.18  E-value=0.067  Score=45.31  Aligned_cols=197  Identities=10%  Similarity=0.026  Sum_probs=92.9

Q ss_pred             CCCeEEEEeC-C---------CcEEEEECCCCCeeeE--ee-eCCccEEEEEECCCCCEEEEeeCC--------------
Q 016522           78 ERNRIVSASQ-D---------GRLIVWNALTSQKTHA--IK-LPCAWVMTCAFSPTGQSVACGGLD--------------  130 (388)
Q Consensus        78 ~~~~l~t~~~-d---------g~v~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d--------------  130 (388)
                      ++..++.|+. +         ..+.+||..+.+-...  .. .......++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            4566677765 2         4688899877543222  11 1111122222  567888888764              


Q ss_pred             -------------------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC------
Q 016522          131 -------------------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------  179 (388)
Q Consensus       131 -------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------  179 (388)
                                               ..+.+||..+..     +.....+......-.+++.. + +.+++.|+.      
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~  215 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ-----WSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPGLR  215 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE-----EEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETTEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCc-----EEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCCcc
Confidence                                     468889987643     11222221111110223333 2 456666654      


Q ss_pred             CCeEEEEec--CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----------------------CceEEEE
Q 016522          180 DQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------STARLWD  235 (388)
Q Consensus       180 dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d  235 (388)
                      ...+..||+  .+......-  .........-.+++..  ++.+++.|+.+                      ..+.+||
T Consensus       216 ~~~v~~~d~d~~~~~W~~~~--~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd  291 (357)
T 2uvk_A          216 TDAVFELDFTGNNLKWNKLA--PVSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL  291 (357)
T ss_dssp             CCCEEEEECC---CEEEECC--CSSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred             cCceEEEEecCCCCcEEecC--CCCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence            345777877  444332221  1101111111123333  56788887742                      2577899


Q ss_pred             CCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCC------cEEEEECCCCceeeEee
Q 016522          236 TRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------TCRLFDIRTGHQLQVYY  289 (388)
Q Consensus       236 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~  289 (388)
                      +.+.. ..+..+......-.++  ..++++++.|+.++      .+.++++++++......
T Consensus       292 ~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          292 WHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             cCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            87541 1121221111111222  23677888888543      36666877776655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.17  E-value=0.078  Score=44.07  Aligned_cols=177  Identities=11%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             CceEEEeeC----CC-------eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-------CceE
Q 016522          171 DTHLITSSG----DQ-------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STAR  232 (388)
Q Consensus       171 ~~~l~~~~~----dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~i~  232 (388)
                      +.+++.|+.    ++       .+..||..+.+....-  ..  .....-.+++..  ++.+++.|+.+       ..+.
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP--PL--PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS--CB--SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC--CC--CccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            466777773    12       2778898877554321  11  111122233333  56777777754       2477


Q ss_pred             EEECCCCCcceEEEecccCC--eeEEEEccCCCEEEEeeCC------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522          233 LWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       233 i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                      +||+.+.  ....+.....+  -.+++. .++++++.|+.+      ..+.+||+.+.+-...-..   +........+.
T Consensus       131 ~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~  204 (318)
T 2woz_A          131 CYDPVAA--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAI  204 (318)
T ss_dssp             EEETTTT--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE
T ss_pred             EEeCCCC--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEE
Confidence            8887754  12222111111  011222 366777777642      3589999987653332111   11111112222


Q ss_pred             ecCCCCEEEEEecCC-----cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522          305 FSISGRLLFAGYSNG-----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  365 (388)
Q Consensus       305 ~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  365 (388)
                        -++++++.|+.++     .+.+||+.+.+-.. +... .........+.+  ++++++.||.++
T Consensus       205 --~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~  264 (318)
T 2woz_A          205 --HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTEF-PQERSSISLVSL--AGSLYAIGGFAM  264 (318)
T ss_dssp             --ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCCC-SSCCBSCEEEEE--TTEEEEECCBCC
T ss_pred             --ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCCC-CCcccceEEEEE--CCEEEEECCeec
Confidence              2567777776532     57789987765332 2111 111111222333  567778877653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.14  E-value=0.024  Score=43.67  Aligned_cols=150  Identities=10%  Similarity=-0.002  Sum_probs=78.9

Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  236 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~  236 (388)
                      ..+.+++|+|++ .+.+.  .+|.+.-.+..+.....-+...  +-...-....++.|.| ++.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence            467799999976 44444  7787777776542211111000  0011111257888888 7777777  5698887775


Q ss_pred             CCCCcc------eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-----eEeeeccCCCCCCCeEEEEe
Q 016522          237 RVASRA------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-----QVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       237 ~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~i~~~~~  305 (388)
                      .+....      ...-..--..+..|.|.|+|.+.++.  |+.+.-....+....     .....   ...-.....+.|
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g---~~g~~~yr~l~f  189 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG---QGGWDTFKFLFF  189 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE---SSSGGGEEEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec---cCCcceEEEEEE
Confidence            332111      11111112457899999999877766  777543332211100     00100   011112455668


Q ss_pred             cCCCCEEEEEecCCcE
Q 016522          306 SISGRLLFAGYSNGDC  321 (388)
Q Consensus       306 ~~~~~~l~~~~~dg~i  321 (388)
                      .+++.+.++.  +|.+
T Consensus       190 ~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          190 SSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             CTTSCEEEEE--TTEE
T ss_pred             CCCCcEEEEe--CCeE
Confidence            8888766665  5533

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.08  E-value=0.18  Score=47.02  Aligned_cols=202  Identities=10%  Similarity=0.073  Sum_probs=104.4

Q ss_pred             CCCCeEEEEeCC----CcEEEEECCCCCeeeEe-e-------eCCccEEEEEECCCCCEEEEeeCCC------cEEEEeC
Q 016522           77 SERNRIVSASQD----GRLIVWNALTSQKTHAI-K-------LPCAWVMTCAFSPTGQSVACGGLDS------VCSIFNL  138 (388)
Q Consensus        77 ~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vw~~  138 (388)
                      .++..++.|+.+    ..+.+||..+.+-...- .       .....-..+.+..+++.++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888998776543322 1       1111223333332778888887543      5778888


Q ss_pred             CCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      .+..-     .....+...... .+++...+ +.+++.|+.++  .+.+||+.+......-.............++.+..
T Consensus       476 ~t~~W-----~~~~~~p~~R~~-h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          476 KTREW-----SMIKSLSHTRFR-HSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             TTTEE-----EECCCCSBCCBS-CEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred             CCCcE-----EECCCCCCCccc-ceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence            76431     111111111111 12222223 46777777654  68999998876443321000011112223345555


Q ss_pred             CCCcEEEEeeCC-------CceEEEECCCCCc--c--eEEEec---ccCCeeEEEEccCCCEEEEeeCC--------CcE
Q 016522          217 SNSRMFVSGSCD-------STARLWDTRVASR--A--VRTFHG---HEGDVNTVKFFPDGNRFGTGSDD--------GTC  274 (388)
Q Consensus       217 ~~~~~l~~~~~d-------g~i~i~d~~~~~~--~--~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d--------g~i  274 (388)
                      ..+.+++.|+.+       ..+..||+.+..-  .  ...+..   ....-.+++...++++++.|+.+        ..+
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  628 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI  628 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence            336788888762       3588899886631  0  122211   11111233333337777887743        459


Q ss_pred             EEEECCCCcee
Q 016522          275 RLFDIRTGHQL  285 (388)
Q Consensus       275 ~i~d~~~~~~~  285 (388)
                      .+||+.+.+-.
T Consensus       629 ~~yd~~t~~W~  639 (695)
T 2zwa_A          629 ISLDPLSETLT  639 (695)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCeEE
Confidence            99999876544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.95  E-value=0.086  Score=40.64  Aligned_cols=178  Identities=10%  Similarity=0.065  Sum_probs=94.6

Q ss_pred             ceEEEeeCCCeEEEEecCCCc------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc----
Q 016522          172 THLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----  241 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  241 (388)
                      .+|+....| +|+.=....+.      ....+.    ...-..+..++|+| ++.+.++  .+|.+.-.+..+...    
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG----~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~   76 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG----KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWM   76 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE----SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHH
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccC----ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccc
Confidence            456666666 66554444433      122221    11124677999999 8887777  677776666543210    


Q ss_pred             -ceEEEe--cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCEEEEEe
Q 016522          242 -AVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       242 -~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                       .-..+-  +-. .-.++.|.|+|.+.++  .||.|.-++-.+.....-+....  ....-..+..+.|.|+|.+.++. 
T Consensus        77 ~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           77 GRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             HHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             ccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence             111110  111 1478999999987777  56988877753321111000000  00011237899999999877777 


Q ss_pred             cCCcEEEEEcccce------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522          317 SNGDCYVWDTLLAK------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  367 (388)
Q Consensus       317 ~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v  367 (388)
                       |+.++-.......      ....+   ....-..-.-+.|.+++.+.++.  +|.+
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~---g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKI---GQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEE---ESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             -CCcEEecCCCCCCCccccccccee---ccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence             7775433222110      00000   01222344557799999876666  6643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.15  Score=42.52  Aligned_cols=199  Identities=11%  Similarity=-0.013  Sum_probs=101.9

Q ss_pred             CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEEEE--eCCCceEEEe-eCCCeEEEEecCCCceEEEe
Q 016522          122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYV--PDEDTHLITS-SGDQTCVLWDITTGLRTSVF  197 (388)
Q Consensus       122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~  197 (388)
                      ..+++++.||.|.-+|..+++       ....+... ..++....-.  +.++..++.. +.||.|..+|..+|.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~-------~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGH-------IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTE-------EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCc-------EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            467888899999999887765       33333221 1122111000  0122333333 68999999999888655444


Q ss_pred             ecccccCCccCeEEEEeeC--------CCCcEEEEeeCCCceEEEECCCCCcceEEEeccc--CC-----eeEEEEc---
Q 016522          198 GGEFQSGHTADVLSVSISG--------SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE--GD-----VNTVKFF---  259 (388)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~-----i~~~~~~---  259 (388)
                      ...... ...++.. .-.|        ..+..+++|+.+|.+...|++++ +.+..+....  +.     ..|....   
T Consensus        84 ~~~~lv-~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           84 SIRQLV-STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG-EIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             EHHHHH-TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTC-CEEEEESTTCBCC----------------
T ss_pred             ccccce-ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCC-cEEEEEecCCCcccccccccccccccccc
Confidence            221111 1112221 0000        04567889999999999999988 5555554221  00     0011110   


Q ss_pred             --cCCCEEEEeeCCCcEEEEECCCCceeeEeeec--cCCCCCCCe-EEEEecCCCCEEEEEecCCcEEEEEcccceEEe
Q 016522          260 --PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV-TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       260 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                        ..+..++.+..+..+.+.+ ++++ .......  ........+ ..-..+.++.+ ++++.||.|.-+|..+++.+.
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence              1245677777777777776 4443 2221100  000000000 00011234555 447788899988888888776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.84  E-value=0.24  Score=46.28  Aligned_cols=198  Identities=11%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             CCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeE-E-----ecccccceEEEEEEe-CCCceEEEeeCC------C
Q 016522          119 PTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR-M-----LSGHKGYVSCCQYVP-DEDTHLITSSGD------Q  181 (388)
Q Consensus       119 ~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g  181 (388)
                      .++..++.|+.+    ..+.+||..+..     +.... .     ..... .-.+++..+ + +.+++.||.+      .
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~-----W~~~~~~~p~~~~p~~R-~~hs~~~~~~~-~~lyv~GG~~~~~~~~~  468 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDK-----IDMKNIEVSSSEVPVAR-MCHTFTTISRN-NQLLLIGGRKAPHQGLS  468 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSC-----EEEEECCCCCSCCCCCC-BSCEEEEETTT-TEEEEECCBSSTTCBCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCe-----EEEeccCCCCCCCCccc-cceEEEEEccC-CEEEEEcCCCCCCCccc
Confidence            456677777653    457788877643     11111 1     01111 112233332 3 4677777644      3


Q ss_pred             eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcceEEEec------ccCCe
Q 016522          182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHG------HEGDV  253 (388)
Q Consensus       182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~------~~~~i  253 (388)
                      .+.+||+.+......-.  .  .....-.+.+... ++.+++.|+.++  .+.+||+.+.  ....+..      .....
T Consensus       469 dv~~yd~~t~~W~~~~~--~--p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~  541 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKS--L--SHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVS  541 (695)
T ss_dssp             CCEEEETTTTEEEECCC--C--SBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBS
T ss_pred             cEEEEeCCCCcEEECCC--C--CCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccce
Confidence            57889988865443321  1  1111222333323 677888887655  6889998764  1222211      11122


Q ss_pred             eEEEEccC-CCEEEEeeC--C-----CcEEEEECCCCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---
Q 016522          254 NTVKFFPD-GNRFGTGSD--D-----GTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---  317 (388)
Q Consensus       254 ~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  317 (388)
                      .++.+..+ +++++.|+.  +     +.+.+||+.+...     -....... ....... +++...++++++.|+.   
T Consensus       542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~-~~~~~~~~~iyv~GG~~~~  619 (695)
T 2zwa_A          542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGS-QIKYITPRKLLIVGGTSPS  619 (695)
T ss_dssp             CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSC-EEEEEETTEEEEECCBCSS
T ss_pred             eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccc-eEEEeCCCEEEEECCccCC
Confidence            33555554 667777765  2     3588999988761     11111100 0001111 2223333677777774   


Q ss_pred             -----CCcEEEEEcccceEE
Q 016522          318 -----NGDCYVWDTLLAKVV  332 (388)
Q Consensus       318 -----dg~i~i~d~~~~~~~  332 (388)
                           ...+.+||+.+.+-.
T Consensus       620 ~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCCCTTTSEEEEETTTTEEE
T ss_pred             CCCCCCCeEEEEECCCCeEE
Confidence                 346999999877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.83  E-value=0.23  Score=43.66  Aligned_cols=112  Identities=8%  Similarity=0.001  Sum_probs=60.8

Q ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeC---CCceEEEeeC
Q 016522          109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPD---EDTHLITSSG  179 (388)
Q Consensus       109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~l~~~~~  179 (388)
                      -.....++|.|+|+++++-...+.|++++..++.     ......+.      ........|+|+|+   +..+.++-+.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-----EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            3457899999999977765544578888754322     11111121      12355678999995   4444444432


Q ss_pred             ------------CCeEEEEecCCC--ce--EEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          180 ------------DQTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       180 ------------dg~v~i~d~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                                  ...|.-++....  ..  ...+..............|+|.| ++.++++.+
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence                        235666665432  11  11111111112223478999999 666666644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.67  E-value=0.21  Score=41.12  Aligned_cols=141  Identities=6%  Similarity=-0.064  Sum_probs=77.7

Q ss_pred             EEEEeCCCceEEEeeCC-------------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--CC
Q 016522          164 CQYVPDEDTHLITSSGD-------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CD  228 (388)
Q Consensus       164 ~~~~~~~~~~l~~~~~d-------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d  228 (388)
                      --++++++.+..+...+             ..|+..++..++.....      ..  .  +..+++ .++.|+-..  .+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~------~~--~--~~~~s~-~g~~Iy~~~~~~~  126 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD------PD--P--CIYASL-IGNYIYYLHYDTQ  126 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE------CS--C--EEEEEE-ETTEEEEEEESSS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee------cC--C--ccEEEE-eCCEEEEEeecCC
Confidence            34577776555555443             46788888776544332      11  1  124555 444454443  33


Q ss_pred             --CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522          229 --STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  305 (388)
Q Consensus       229 --g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (388)
                        ..|...++..  .....+..+..    ..++|+++.|+-.+. ...|...++..+.....+ .  ..     . ...+
T Consensus       127 ~~~~Iy~~~~dG--s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~--~~-----~-~~~~  191 (302)
T 3s25_A          127 TATSLYRIRIDG--EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D--CN-----C-YKPV  191 (302)
T ss_dssp             SCEEEEEEETTS--CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C--SC-----E-EEEE
T ss_pred             CCceEEEEECCC--CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C--CC-----c-ccee
Confidence              4455555553  33444544432    456778888876654 567888888765543332 1  11     2 2345


Q ss_pred             cCCCCEEEEEecCC--cEEEEEcccce
Q 016522          306 SISGRLLFAGYSNG--DCYVWDTLLAK  330 (388)
Q Consensus       306 ~~~~~~l~~~~~dg--~i~i~d~~~~~  330 (388)
                      .|++.+|+-...++  .|..-++....
T Consensus       192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          192 VLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             eecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            68898887765443  56666665444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.62  E-value=0.32  Score=42.66  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee--------CCccEEEEEECCC---CCEEEEeeC-------
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSPT---GQSVACGGL-------  129 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~~~~~-------  129 (388)
                      ....+|+|.|+|+++++-...+.|++++..++........        .......|+|+|+   +..|+++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3577999999998777654445788887655554322211        2345779999995   555554432       


Q ss_pred             ------CCcEEEEeCCCCCCCCCCCc-eeEEec-ccccceEEEEEEeCCCceEEE
Q 016522          130 ------DSVCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLIT  176 (388)
Q Consensus       130 ------dg~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~  176 (388)
                            ...|.-++............ +...+. ........|+|.|+|. ++++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~  160 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYT  160 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEE
Confidence                  13455555543211000001 111111 1123467899999984 4444

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.35  E-value=0.32  Score=39.55  Aligned_cols=222  Identities=12%  Similarity=-0.009  Sum_probs=114.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      .|..++.-... .++. . ||.+..|-........  .+     ......|..++...  ...++. . ||.|..|-...
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg--~p-----~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~   90 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLT--MP-----AATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNE   90 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTS--CC-----GGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCT
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCC--CC-----ccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCC
Confidence            46666554332 2333 4 8999999876533111  01     11123566666543  233444 4 89999997654


Q ss_pred             CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522          191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  270 (388)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  270 (388)
                      .-.+.. +    ......|..++...  ...++ -. +|.|..|-.....+.- ........|..++...+  ..+.-. 
T Consensus        91 ~Gqlg~-P----~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-  157 (282)
T 3qhy_B           91 DGQTTV-P----AEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-  157 (282)
T ss_dssp             TSTTCC-C----GGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-
T ss_pred             CCCCCC-C----cccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-
Confidence            322211 1    12234688887764  23333 34 9999999765432221 11112345666665433  233334 


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      ||.|..|-......+.....     ....|..++....  +.++- .||.|+.|-......+..-    ......|..++
T Consensus       158 ~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~  225 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVP----TEALSGVSAIA  225 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCGG-----GGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCC----GGGGSSCCEEE
T ss_pred             CCEEEEecCCCCCCCCCcee-----cCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCC----cccCCCceEEE
Confidence            78999997655333221111     1124677665433  33333 6999999975432111110    11234577887


Q ss_pred             ECCCCCeEEEccCCCeEEEeccce
Q 016522          351 LSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       351 ~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...+...+++   ||.|..|=...
T Consensus       226 ~G~~h~~al~---~g~v~~wG~n~  246 (282)
T 3qhy_B          226 SGEWYSLALK---NGKVIAWGSSR  246 (282)
T ss_dssp             ECSSCEEEEE---TTEEEEESTTC
T ss_pred             cCCCEEEEEE---CCEEEEecCCC
Confidence            6654433333   89999996543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.34  E-value=0.49  Score=41.58  Aligned_cols=114  Identities=7%  Similarity=0.038  Sum_probs=59.0

Q ss_pred             ccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-----ccccceEEEEEEeC---CCceEEEeeC-
Q 016522          110 AWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-----GHKGYVSCCQYVPD---EDTHLITSSG-  179 (388)
Q Consensus       110 ~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~-  179 (388)
                      .....|+|.|+|. .++++...|.|++++............+...+.     ........|+++|+   +..+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3468999999996 566667889999997543210000000000011     11356788999985   2233333221 


Q ss_pred             -C----------CeEEEEecCCC----------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          180 -D----------QTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       180 -d----------g~v~i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                       +          ..|.-|.+..+          +.+..+..   ....-....|.|.| ++.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgp-DG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGP-DGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECT-TSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECC-CCcEEEEeCC
Confidence             1          14444655421          22222211   12223467899999 6677666554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.28  E-value=0.47  Score=40.74  Aligned_cols=270  Identities=8%  Similarity=-0.033  Sum_probs=120.7

Q ss_pred             CCeeEEEeCC-CCCeEEEEeCCC----cEEEEECCCCCeeeEeee--------------CCccEEEEEECCC--CCEEEE
Q 016522           68 GKVYSLDWTS-ERNRIVSASQDG----RLIVWNALTSQKTHAIKL--------------PCAWVMTCAFSPT--GQSVAC  126 (388)
Q Consensus        68 ~~v~~~~~~~-~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~~  126 (388)
                      ..|.+|++.| +...|..++..|    .|...+ ..++.-..+..              ....|.++++.|.  ...+.+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4699999998 333444454444    343332 23332222211              1125778999872  455666


Q ss_pred             eeCCCcEEEEeCCCCCCCCCCCceeEEec----------------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      +...+-|...  ..+.   ..+.......                .....+.+|.+.|..+..+..+..++.|...+- .
T Consensus       134 g~~~ggl~~S--~DgG---~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-g  207 (394)
T 3b7f_A          134 GTSPQGLFRS--TDHG---ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-A  207 (394)
T ss_dssp             EEETTEEEEE--SSTT---SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-T
T ss_pred             EecCCcEEEE--cCCC---CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-C
Confidence            6555544433  3221   0111111000                112357788888753344555554554544432 2


Q ss_pred             CceEEEeecccccC--------CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--cc---CCeeEEE
Q 016522          191 GLRTSVFGGEFQSG--------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVK  257 (388)
Q Consensus       191 ~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~i~~~~  257 (388)
                      ++.-..+.......        ....+.++.+.|.+...+.++...+ |...+-  .......+..  ..   ..+.++.
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D--~G~tW~~~~~~l~~~~~~~~~~i~  284 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR--REGVWKRIGDAMPREVGDIGFPIV  284 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET--TTTEEECGGGGSCTTTCSCEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC--CCCcceECCCCCCCCCccceEEEE
Confidence            22222221100000        0135889999986566777776554 433331  1122222211  11   2356788


Q ss_pred             Ecc-CCCEEEEeeC-----------CCcEEEEECCCC-ceeeEeeeccCCCCC---CCeEEEEecCCC-CEEEEEecCCc
Q 016522          258 FFP-DGNRFGTGSD-----------DGTCRLFDIRTG-HQLQVYYQQHGENEI---PHVTSIAFSISG-RLLFAGYSNGD  320 (388)
Q Consensus       258 ~~~-~~~~l~~~~~-----------dg~i~i~d~~~~-~~~~~~~~~~~~~~~---~~i~~~~~~~~~-~~l~~~~~dg~  320 (388)
                      ++| +...|.++..           ++...+|...++ +.-..+.........   .....++++|.. ..|++++.++.
T Consensus       285 ~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~  364 (394)
T 3b7f_A          285 VHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE  364 (394)
T ss_dssp             ECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC
T ss_pred             ECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe
Confidence            876 3344544432           233455555443 322222211110000   012357787753 45666766666


Q ss_pred             EEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      |+.-+ ..++....+    ..+-..+.+++|.
T Consensus       365 l~~S~-D~G~tW~~~----~~~lp~~~~v~~~  391 (394)
T 3b7f_A          365 IWASA-DEGEHWQCI----ASHLPHIYAVQSA  391 (394)
T ss_dssp             EEEES-STTSBCEEE----ECSCSCEEEEEEE
T ss_pred             EEEEC-CCCCCceEc----ccCCCCeeEEEEe
Confidence            55432 223322222    2223346666653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.56  E-value=0.8  Score=37.62  Aligned_cols=177  Identities=5%  Similarity=0.001  Sum_probs=95.9

Q ss_pred             EEeCCCCCeEEEEeCC--------------CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee--CC--CcEE
Q 016522           73 LDWTSERNRIVSASQD--------------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG--LD--SVCS  134 (388)
Q Consensus        73 ~~~~~~~~~l~t~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~  134 (388)
                      --++++|++|+-+...              ..|+..++...+... +....    ...|+++++.|+-..  .+  ..|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457888888766543              357777776665333 22221    226777888888775  33  4555


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI  214 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (388)
                      ..+++...        ...+..+..    ..++++++.+..+......|.+.++..+.....+     .+   ... ..+
T Consensus       133 ~~~~dGs~--------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-----~~---~~~-~~~  191 (302)
T 3s25_A          133 RIRIDGEE--------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-----DC---NCY-KPV  191 (302)
T ss_dssp             EEETTSCC--------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-----CS---CEE-EEE
T ss_pred             EEECCCCC--------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-----CC---Ccc-cee
Confidence            55555322        222333322    3467777666666655778999998776655443     21   111 235


Q ss_pred             eCCCCcEEEEeeCC-CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEEEEECCC
Q 016522          215 SGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRT  281 (388)
Q Consensus       215 ~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~  281 (388)
                      .|.++.++.+...+ ..|..-++...  ....+..  ..+  ..|+|++.+|+-++  ..+.|..-++..
T Consensus       192 ~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          192 VLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEECSSSC--CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             eecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            57344444443222 24555555533  3333332  233  34778888887653  235666666654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.44  E-value=0.84  Score=37.08  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=123.5

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      .|..++..... .++. . ||.|..|-......+..-......|..++...... ++. . ||.+..|-.........  
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~--   96 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV--   96 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC--
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC--
Confidence            57777765442 2333 4 89999997544222211111123466665543332 333 4 89999998765332111  


Q ss_pred             ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522          149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      +     ..-...|..++...   ...+.-. ||.|..|-....-.+...     ......|..++...  ...++. . |
T Consensus        97 P-----~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~~G~--~~~~~l-~-~  158 (282)
T 3qhy_B           97 P-----AEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGGV--YTALAV-K-N  158 (282)
T ss_dssp             C-----GGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEEECS--SEEEEE-E-T
T ss_pred             C-----cccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEEccc--CEEEEE-E-C
Confidence            0     01123566666654   3344445 999999976543222111     22345677777653  233333 3 7


Q ss_pred             CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522          229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                      |.|..|-.....+.- ....-...|..++-..+ ..++.  .||.|..|-......+....     .....|..++....
T Consensus       159 G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~  229 (282)
T 3qhy_B          159 GGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGEW  229 (282)
T ss_dssp             TEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECSS
T ss_pred             CEEEEecCCCCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc-----ccCCCceEEEcCCC
Confidence            999999765432221 11112345666665433 22333  58999999865543332111     11123666665433


Q ss_pred             CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      . .++. . ||.|+.|-.....++.        ....|..++-....
T Consensus       230 h-~~al-~-~g~v~~wG~n~~gq~~--------v~~~v~~iaaG~~h  265 (282)
T 3qhy_B          230 Y-SLAL-K-NGKVIAWGSSRTAPSS--------VQSGVSSIEAGPNA  265 (282)
T ss_dssp             C-EEEE-E-TTEEEEESTTCCCCGG--------GSSCEEEEEECSSC
T ss_pred             E-EEEE-E-CCEEEEecCCCCcccc--------CCCCcEEEEECcCe
Confidence            2 3333 3 9999999755432211        12356666665443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.21  E-value=0.54  Score=41.79  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             eEEEECCC----CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCce---------eeEeeeccCCCC
Q 016522          231 ARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ---------LQVYYQQHGENE  296 (388)
Q Consensus       231 i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~~~  296 (388)
                      +.+.|.+.    . ..+..+-.-......+..+|||+++++++ .+.++.++|++....         .......  ...
T Consensus       300 v~ViD~~~~~~~~-~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~  376 (638)
T 3sbq_A          300 TPVLDGRKKDGKD-SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PEL  376 (638)
T ss_dssp             CCEEECSCBTTBC-CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBC
T ss_pred             eeEEccccccccC-CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccC
Confidence            55666654    2 12222323344567899999999988766 578899999874211         0011110  112


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      .......+|+++|....+-.-|..|.-|++...
T Consensus       377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            234688999999955555557999999998754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.12  E-value=1.6  Score=38.38  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             CCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC---eeeEee---e------CCccEEEEEECCC
Q 016522           68 GKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---KTHAIK---L------PCAWVMTCAFSPT  120 (388)
Q Consensus        68 ~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~---~~~~~~---~------~~~~v~~~~~~~~  120 (388)
                      ..-..|+|.|+|. .|+++...|.|++++.....   .+..+.   .      .......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4577999999996 56666788999999753221   122111   0      1346889999996

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.11  E-value=1.4  Score=37.73  Aligned_cols=282  Identities=10%  Similarity=-0.029  Sum_probs=125.1

Q ss_pred             CeEEEEeCCCcEEEEECCC-CCeeeEe--eeCCccEEEEEECC-CCCEEEEeeCCC--cEEEEeCCCCCCCCCCCceeEE
Q 016522           80 NRIVSASQDGRLIVWNALT-SQKTHAI--KLPCAWVMTCAFSP-TGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRM  153 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~  153 (388)
                      ..|..|...| +.+++... +..-..+  ......|.++++.| +...+.+++..|  --.||.......   .+.....
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~---tW~~~~~   98 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGG---NWTEATR   98 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTS---CCEECSB
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCC---CceECCc
Confidence            3677777777 55555332 2222222  23445799999998 333444444444  012333322110   1111100


Q ss_pred             ---ecc--------cccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeeccc--c------------cCCcc
Q 016522          154 ---LSG--------HKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEF--Q------------SGHTA  207 (388)
Q Consensus       154 ---~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~------------~~~~~  207 (388)
                         +..        ....|.++++.|.+ +..+..++..+.|...+- .++.-..+....  .            .....
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence               010        12357788888742 345666666665555432 222222221100  0            01224


Q ss_pred             CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------------cCCeeEEEEccC-CCEEEEeeCCCc
Q 016522          208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------EGDVNTVKFFPD-GNRFGTGSDDGT  273 (388)
Q Consensus       208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~-~~~l~~~~~dg~  273 (388)
                      .+.+|.+.|.+...+..+..++.|...  .........+...             ...+.++.++|. ...|+.+...+ 
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-  254 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-  254 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence            578899987544444555444444333  2222222222110             124788999985 46677666544 


Q ss_pred             EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEEec-----------CCcEEEEEccc-ceEEeeccC-CC
Q 016522          274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS-----------NGDCYVWDTLL-AKVVLNLGS-LQ  339 (388)
Q Consensus       274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~-~~  339 (388)
                      |...+ ..++.-..+...........+..++++|. ...|.++..           ++...+|.... ++....+.. +.
T Consensus       255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp  333 (394)
T 3b7f_A          255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP  333 (394)
T ss_dssp             EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred             EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence            44433 22332222211011100123567888763 334444432           33345555443 222222210 00


Q ss_pred             CCcC---CCeeEEEECCC-CCeEEEccCCCeEEEe
Q 016522          340 NSHE---GRITCLGLSAD-GSALCTGSWDTNLKVS  370 (388)
Q Consensus       340 ~~~~---~~v~~~~~~~~-~~~l~s~~~dg~v~iw  370 (388)
                      ....   .....++++|. ...|+.++.++.|..-
T Consensus       334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S  368 (394)
T 3b7f_A          334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS  368 (394)
T ss_dssp             CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred             CccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            1000   01246788874 3456666666666553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.46  E-value=0.064  Score=47.46  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=49.7

Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------c-eEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------A-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                      .....+.++|+....++.|-.+.++.++|++....           . ..... -.-.....+|.++|.-..+.--|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence            44566788884444555566788999999874211           1 11111 23356789999999656666689999


Q ss_pred             EEEECCC
Q 016522          275 RLFDIRT  281 (388)
Q Consensus       275 ~i~d~~~  281 (388)
                      ..|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999865

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=90.85  E-value=5.9  Score=32.51  Aligned_cols=245  Identities=10%  Similarity=0.056  Sum_probs=122.8

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCCeee---------EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---CCCC
Q 016522           77 SERNRIVSASQDGRLIVWNALTSQKTH---------AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDK  144 (388)
Q Consensus        77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~  144 (388)
                      |+...+++.+.+|.|+--.+.+.+...         .++.. ..+..+........++..+..|.+.-+....   ....
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            455678899999999877664422211         12222 3344554555566677777888766555432   2111


Q ss_pred             CCCCceeEEec-ccccceEEEEEEe--CCCceEEEeeCCCeEEEEecCCCceE---EEeecccccCCccCeEEEEeeCCC
Q 016522          145 DGNLPVSRMLS-GHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       145 ~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                      ..-.+....+. .....|..+...+  +.+.+++..+..|.++...+..-...   ....... .. .+.+..+.... +
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~-~d~lv~~~~~~-~  156 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VD-GDELIGVDLTS-G  156 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CT-TCCEEEEEEEC-T
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CC-CCEEEEEEEeC-C
Confidence            00111100111 1234565554432  22357889999999998876422111   1110011 22 25566655554 4


Q ss_pred             CcEEEEeeCCCceEEEECCCCC---c---ceEEEe-cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-------
Q 016522          219 SRMFVSGSCDSTARLWDTRVAS---R---AVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------  284 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~---~---~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------  284 (388)
                      ...++..+.+|.+..++...-.   +   -+..+. .....|.++...+++..+++.+..|.++-.++.....       
T Consensus       157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG  236 (307)
T 1zi0_A          157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG  236 (307)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred             CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence            4556677888888888764321   1   111111 1234566665555566788888889888887643211       


Q ss_pred             eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ...+..   ......+..+....+...++..+.+|.+.-++...
T Consensus       237 ~~~~~~---~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          237 VISIKV---TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             EESSCC---CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             EEeeEe---cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            111111   11112344443333344556666777776666544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.71  E-value=7  Score=33.14  Aligned_cols=174  Identities=9%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             eEEEEecCCC--ceEEEeeccc-ccCCccCeEEEEee---CC---CCcEEEEe-eCCCceEEEECCCCCcceEEEe----
Q 016522          182 TCVLWDITTG--LRTSVFGGEF-QSGHTADVLSVSIS---GS---NSRMFVSG-SCDSTARLWDTRVASRAVRTFH----  247 (388)
Q Consensus       182 ~v~i~d~~~~--~~~~~~~~~~-~~~~~~~i~~~~~~---~~---~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----  247 (388)
                      +|.+||+.++  +.+..+.... .......+..+.+.   |.   +..++..+ ...+.|.++|+.++ +..+...    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~-~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ-DSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT-EEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC-cEEEEccCCCc
Confidence            5778999998  8877775421 12234567888887   21   13343333 34678999999876 3333321    


Q ss_pred             ----------cc----cCCeeEEEEccC----CCEEEEeeCCCcEEEEECC-----CCceeeEeeeccCCCCCCCeEEEE
Q 016522          248 ----------GH----EGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR-----TGHQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       248 ----------~~----~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                                +.    ...+..|+++|+    ++.|+-....+ -++|.+.     .......+...........-..++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~  281 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA  281 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence                      11    236788899987    67777665544 2334332     221111111000011112244567


Q ss_pred             ec-CCCCEEEEEecCCcEEEEEccc-c------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522          305 FS-ISGRLLFAGYSNGDCYVWDTLL-A------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       305 ~~-~~~~~l~~~~~dg~i~i~d~~~-~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ++ .+|.++++--....|..|+..+ .      ..+..     ...-.-+..+.+.++|.+.++.+
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-----d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-----SSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-----CTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-----CCCccccCeEEECCCCeEEEEEC
Confidence            75 5676667767788999999865 1      22221     12223577888877776555543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=90.41  E-value=12  Score=35.45  Aligned_cols=157  Identities=6%  Similarity=0.009  Sum_probs=76.7

Q ss_pred             cCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC-------CccEEEEEECCCC-CEEEEeeCCCc----E
Q 016522           67 AGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPTG-QSVACGGLDSV----C  133 (388)
Q Consensus        67 ~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~----i  133 (388)
                      .+.|.+|+++|. ...++.++..+.|...+ ..++.-..+...       ...+.+++++|.. ..++++..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            358999999995 35666777777666554 344433333221       2359999999843 44444432211    3


Q ss_pred             EEEeCCCCCCCCCCCceeEE-ec--c---cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc-cCCc
Q 016522          134 SIFNLNSPTDKDGNLPVSRM-LS--G---HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHT  206 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~  206 (388)
                      .||....+.   ..+..... +.  .   ....+..+++.|.....+..+...+.|.. ....++.-........ ....
T Consensus        93 ~v~~S~DgG---~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~  168 (789)
T 1sqj_A           93 AFYVSEDRG---QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG  168 (789)
T ss_dssp             EEEEESSTT---SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred             EEEEECCCC---CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence            344433321   01111110 00  0   01134567787754455666654443321 2222332222211000 0112


Q ss_pred             cCeEEEEeeCCCCcEEEEeeCC
Q 016522          207 ADVLSVSISGSNSRMFVSGSCD  228 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~d  228 (388)
                      ..+..+.++|.+...++++..+
T Consensus       169 ~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          169 IGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TCEEEEEECTTSTTCEEEEESS
T ss_pred             CCeEEEEECCCCCCEEEEEEcC
Confidence            4578888988666566666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.17  E-value=14  Score=35.85  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=33.1

Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      .+.+++..++..++++-+.|+++|+|++.+++++.....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            456777777888999999999999999999998877643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=88.45  E-value=17  Score=34.45  Aligned_cols=158  Identities=10%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCc----e
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDST----A  231 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~----i  231 (388)
                      .+.|.+++++|..+..++.++..+.|...+= .++.-..+.......  ....+.++++.|.+.+.++++..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            4689999999987677888887777765542 333322221100000  23469999999855555555543211    3


Q ss_pred             EEEECCCCCcceEEEecc-------c--CCeeEEEEccC-CCEEEEeeCCCcEEEEECCC-CceeeEeeeccC-CCCCCC
Q 016522          232 RLWDTRVASRAVRTFHGH-------E--GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHG-ENEIPH  299 (388)
Q Consensus       232 ~i~d~~~~~~~~~~~~~~-------~--~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~-~~~~~~  299 (388)
                      .||-.....+.-......       .  ..+..++++|. .+.++.+...+.|  |-..+ ++.-........ ......
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence            444433332333333210       0  13556888873 4566666644433  33322 322222211000 001135


Q ss_pred             eEEEEecCC-CCEEEEEecC
Q 016522          300 VTSIAFSIS-GRLLFAGYSN  318 (388)
Q Consensus       300 i~~~~~~~~-~~~l~~~~~d  318 (388)
                      +..+.++|. +..++++..+
T Consensus       171 ~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEEECTTSTTCEEEEESS
T ss_pred             eEEEEECCCCCCEEEEEEcC
Confidence            788999885 3456666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.71  E-value=21  Score=34.67  Aligned_cols=38  Identities=13%  Similarity=0.102  Sum_probs=31.1

Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      .+.+++..++ ..++++-+.|+++++|++.+++++....
T Consensus       237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            4566666665 4689999999999999999999888764

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=87.17  E-value=1.5  Score=24.86  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016522            3 SSVSELKERHAAAIETVNSLRERLKQKRQQLL   34 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (388)
                      +-+|+|+.+.++++.++..|.+++...+.++.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999888764

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=86.80  E-value=1.2  Score=27.66  Aligned_cols=36  Identities=25%  Similarity=0.158  Sum_probs=26.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 016522            4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVA   39 (388)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (388)
                      .|++|++.....+.++..+++++.....++.+....
T Consensus        29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~   64 (78)
T 3efg_A           29 ALTELSEALADARLTGARNAELIRHLLEDLGKVRST   64 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            578888888888899999999999888887665543

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=86.02  E-value=1.7  Score=20.26  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522            5 VSELKERHAAAIETVNSLRERLKQKRQ   31 (388)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   31 (388)
                      |.+++.+++.++.|+..++-++.+.++
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            566777777777777777666655543

>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A

Probab=85.72  E-value=1.7  Score=19.96  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522            5 VSELKERHAAAIETVNSLRERLKQKR   30 (388)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (388)
                      -|++++..+.++..++.+++++++..
T Consensus         3 wealekkcaalesklqalekkleale   28 (31)
T 3ljm_A            3 WEALEKKCAALESKLQALEKKLEALE   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999998888753

>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1

Probab=85.40  E-value=2  Score=20.47  Aligned_cols=28  Identities=21%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522            3 SSVSELKERHAAAIETVNSLRERLKQKR   30 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (388)
                      .++.+++++++..+++++..++++.+.+
T Consensus         2 ekiaaikeeqaaieeeiqaikeeiaaik   29 (36)
T 1bb1_B            2 EKIAAIKEEQAAIEEEIQAIKEEIAAIK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888888888887776543

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=84.70  E-value=16  Score=30.29  Aligned_cols=242  Identities=9%  Similarity=0.034  Sum_probs=126.5

Q ss_pred             CeEEEEeCCCcEEEEECCCC-------CeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeC---CCCCCCCCCC
Q 016522           80 NRIVSASQDGRLIVWNALTS-------QKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNL---NSPTDKDGNL  148 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~---~~~~~~~~~~  148 (388)
                      ..+++.+.+|.|+--.+.+.       +-...+.. ....+..+........++.-+..|.++-...   ........-.
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            46788888888886653211       11111111 1233555555555666666667776655443   3221111000


Q ss_pred             ceeEEec-ccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEE---EeecccccCCccCeEEEEeeCCCCcEE
Q 016522          149 PVSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS---VFGGEFQSGHTADVLSVSISGSNSRMF  222 (388)
Q Consensus       149 ~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l  222 (388)
                      +....+. .....|..+...++  .+.+++..+.+|.++...+..-....   .....  ......+..+.... ....+
T Consensus        84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~--lke~D~lv~~~~~~-~~d~i  160 (327)
T 3uc1_A           84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN--LRDNDELVGAVLCS-AGDDL  160 (327)
T ss_dssp             EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB--CCTTCCEEEEEEEC-TTCEE
T ss_pred             EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE--ECCCCEEEEEEEec-CCCEE
Confidence            1000111 12345555544442  24689999999999988765422111   10000  12345566665554 44567


Q ss_pred             EEeeCCCceEEEECC--CCC---cc---e--EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-------e
Q 016522          223 VSGSCDSTARLWDTR--VAS---RA---V--RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------L  285 (388)
Q Consensus       223 ~~~~~dg~i~i~d~~--~~~---~~---~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~  285 (388)
                      +..+..|.+..+...  .-.   +.   +  ..+. ....|.++...+++..++..+..|.++.-.+.....       .
T Consensus       161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~  239 (327)
T 3uc1_A          161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV  239 (327)
T ss_dssp             EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence            777888988888776  221   10   1  1121 234566666666667899999999998887644222       1


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      ..+..   ......+..+....+...++..+.+|.+.-++...
T Consensus       240 ~~~~l---~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          240 LTVMY---DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             ESSCC---CTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEe---cCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            11111   11112344444444455677777888888787643

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=84.52  E-value=16  Score=30.24  Aligned_cols=191  Identities=10%  Similarity=0.035  Sum_probs=104.5

Q ss_pred             ceEEEeeCCCeEEEEecCCCc-------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC---CCCC-
Q 016522          172 THLITSSGDQTCVLWDITTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---RVAS-  240 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~-  240 (388)
                      ..+++.+.+|.|+--.+.+-.       -....    .......+..+.... ....++.-+..|.++....   .... 
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~----~~ke~D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r   78 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA----GLKQDDIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASR   78 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------C----CCCGGGCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc----ccCCCCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            467888888988866543211       11111    022344555554444 4445555666777665543   2210 


Q ss_pred             ----cceE---EEecccCCeeEEE-Ecc--CCCEEEEeeCCCcEEEEECCCCceeeE--eeeccCCCCCCCeEEEEecCC
Q 016522          241 ----RAVR---TFHGHEGDVNTVK-FFP--DGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       241 ----~~~~---~~~~~~~~i~~~~-~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~  308 (388)
                          .++.   .+. ....|.++. ..+  +..+++..+.+|.++--.+........  ..... ......+..+.....
T Consensus        79 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-lke~D~lv~~~~~~~  156 (327)
T 3uc1_A           79 TARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-LRDNDELVGAVLCSA  156 (327)
T ss_dssp             SSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-CCTTCCEEEEEEECT
T ss_pred             cCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-ECCCCEEEEEEEecC
Confidence                1110   111 223455443 332  578999999999999988765322111  00000 011223555555555


Q ss_pred             CCEEEEEecCCcEEEEEcc--cceE-------EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          309 GRLLFAGYSNGDCYVWDTL--LAKV-------VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      ...|+..+..|.+..+...  .-..       +..+.   -.....|.++...+++..|+..+..|.++.-..
T Consensus       157 ~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~---L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l  226 (327)
T 3uc1_A          157 GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR---FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAI  226 (327)
T ss_dssp             TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC---CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec---CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence            6688888899998888766  2111       11111   123456777776666778899999999887653

>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A

Probab=80.27  E-value=1.2  Score=23.06  Aligned_cols=31  Identities=13%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522            3 SSVSELKERHAAAIETVNSLRERLKQKRQQL   33 (388)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (388)
                      ++++.+++.++.++.+.+.++++.......+
T Consensus         4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l   34 (37)
T 3azd_A            4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV   34 (37)
T ss_dssp             --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5688999999999999999999888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-42
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (377), Expect = 1e-42
 Identities = 127/354 (35%), Positives = 186/354 (52%), Gaps = 22/354 (6%)

Query: 19  VNSLRERLKQKRQQLLDVDVAGYS---RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDW 75
           ++ LR+  +Q + Q+ D   A                G   +   RTL+GH  K+Y++ W
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query: 76  TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
            ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
           +NL +              +G+              +   T+           T      
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT------ 177

Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
                         +       ++R+FVSG+CD++A+LWD R      +TF GHE D+N 
Sbjct: 178 -----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231

Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
           + FFP+GN F TGSDD TCRLFD+R   +L  Y   +       +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC---GITSVSFSKSGRLLLAG 288

Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           Y + +C VWD L A     L      H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
            VM+ + +P  +    G  D+   ++++             +  +GH+  ++   + P+ 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM-------CRQTFTGHESDINAICFFPNG 238

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
           +    T S D TC L+D+                    + SVS S  + R+ ++G  D  
Sbjct: 239 N-AFATGSDDATCRLFDLR---ADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFN 293

Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
             +WD   A R      GH+  V+ +    DG    TGS D   ++++
Sbjct: 294 CNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 5e-11
 Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 16/238 (6%)

Query: 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206
            +   R L GH   +    +  D    L+++S D   ++WD  T  +            +
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRS 97

Query: 207 ADVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
           + V++ + + S + +   G  +  +     TR  +  V           +   F D N+ 
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
            T S D TC L+DI TG Q   +           V S++ +   RL  +G  +    +WD
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHT-----GDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC 383
                           HE  I  +    +G+A  TGS D   ++        LM    
Sbjct: 213 VREGMCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 15/79 (18%), Positives = 30/79 (37%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
              +       + S+ ++     +++   D    VW+AL + +   +      V     +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 119 PTGQSVACGGLDSVCSIFN 137
             G +VA G  DS   I+N
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 2e-31
 Identities = 71/329 (21%), Positives = 120/329 (36%), Gaps = 44/329 (13%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
             L GH   V  + +    + +VSAS+D  + VW+  T      +K     V   +F  +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
           G+ +A    D    +++              R + GH   VS    +P+   H++++S D
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPN-GDHIVSASRD 122

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
           +T  +W++ TG     F     +GH   V  V  +  +  +  S S D T R+W      
Sbjct: 123 KTIKMWEVQTGYCVKTF-----TGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVA-TK 175

Query: 241 RAVRTFHGHEGDVNTVKF--------------------FPDGNRFGTGSDDGTCRLFDIR 280
                   H   V  + +                       G    +GS D T +++D+ 
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
           TG  L              V  + F   G+ + +   +    VWD    + +  L    N
Sbjct: 236 TGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----N 286

Query: 341 SHEGRITCLGLSADGSALCTGSWDTNLKV 369
           +HE  +T L        + TGS D  +KV
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 1e-25
 Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             RTL+GH   V  + +      + S S D  + +W+    +    +      V + +  
Sbjct: 51  FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 110

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
           P G  +     D    ++ + +           +  +GH+ +V   +   D  T + + S
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCV-------KTFTGHREWVRMVRPNQD-GTLIASCS 162

Query: 179 GDQTCVLWDITTGLRTSVFGG--------------EFQSGHTADVLSVSISGSNSRMFVS 224
            DQT  +W + T    +                   + S   A       SG      +S
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
           GS D T ++WD       + T  GH+  V  V F   G    + +DD T R++D +    
Sbjct: 223 GSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
           ++             VTS+ F  +   +  G  +    VW+
Sbjct: 282 MKTLNAHEHF-----VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 17/224 (7%)

Query: 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208
           P    LSGH+  V+   + P     ++++S D T  +WD  TG            GHT  
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTL-----KGHTDS 61

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           V  +S   S   +    +  +             +RT HGH+ +V++V   P+G+   + 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328
           S D T ++++++TG+ ++ +           V  +  +  G L+ +  ++    VW    
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372
            +    L      H   + C+  + + S         +      
Sbjct: 175 KECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSG 214

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
           + W  R          GH   V  V F P  +   + S+D T +++D  TG   +  
Sbjct: 1   KEWIPR--PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 57/349 (16%), Positives = 117/349 (33%), Gaps = 56/349 (16%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------- 110
           V       H   V  + ++++   + +   +    V+          +    A       
Sbjct: 53  VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 111 -----------WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159
                      ++ +  FSP G+ +A G  D +  I+++ +            M+     
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------MILQGHE 163

Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
                         L++ SGD+T  +WD+ TG  +              V +V++S  + 
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------LTLSIEDGVTTVAVSPGDG 217

Query: 220 RMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273
           +   +GS D   R+WD+              +  GH+  V +V F  DG    +GS D +
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 274 CRLFDIRTGHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
            +L++++  +        +              V S+A + +   + +G  +     WD 
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337

Query: 327 LLAKVVLNLGSLQNSHEGRITCLG------LSADGSALCTGSWDTNLKV 369
                +L L      H   +  +       L  + +   TGS D   ++
Sbjct: 338 KSGNPLLML----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.4 bits (225), Expect = 5e-21
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 16/219 (7%)

Query: 75  WTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134
           +    +++VS S D  + +W+  T Q +  + +             G+ +A G LD    
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
           +++  +    +     +   +GHK  V    +  D    +++ S D++  LW++      
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNK 289

Query: 195 SVFGGEF-------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 247
           S               GH   VLSV+ +  N    +SGS D     WD + +   +    
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ 347

Query: 248 GHEGDVNTV------KFFPDGNRFGTGSDDGTCRLFDIR 280
           GH   V +V         P+ N F TGS D   R++  +
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 1e-15
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-------AW 111
           C  TL    G         +   I + S D  + VW++ T      +             
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQY 166
           V +  F+  GQSV  G LD    ++NL +  +K       +        GHK +V     
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-----NSRM 221
             + D ++++ S D+  + WD  +G    +       GH   V+SV+++          +
Sbjct: 317 TQN-DEYILSGSKDRGVLFWDKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNV 370

Query: 222 FVSGSCDSTARLWDTR 237
           F +GS D  AR+W  +
Sbjct: 371 FATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 52  FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----- 106
             P    C  T  GH   V S+  T     I+S S+D  ++ W+  +      ++     
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 107 -LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138
            +  A     +  P     A G  D    I+  
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRF 265
              + +   +    +    +    L++  +        H    H   V  VKF  DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------------HVTSIAFSISGRLL 312
            TG +  T +++ +  G  +         N+ P             ++ S+ FS  G+ L
Sbjct: 78  ATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 313 FAGYSNGDCYVW 324
             G  +    +W
Sbjct: 137 ATGAEDRLIRIW 148

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 2e-21
 Identities = 69/350 (19%), Positives = 122/350 (34%), Gaps = 45/350 (12%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
           +L   + L+GH   V +       NRIVS S D  L VW+A+T +    +      V + 
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 116 AFSPTGQ----------------------------SVACGGLDSVCSIFNLNSPTDKDGN 147
                                              +V C  L     +      T +  +
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207
           +   + L    G+V+  + V  +   +++ + D    +WD  T             GHT 
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-----QGHTN 178

Query: 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267
            V S+   G      VSGS D++ R+WD       + T  GH+   + ++     N   +
Sbjct: 179 RVYSLQFDG---IHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMEL--KDNILVS 232

Query: 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327
           G+ D T +++DI+TG  LQ     +               +   +     +G   +WD  
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDLK 288

Query: 328 LAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376
             + + NL +L++    G +  +  S        GS +   +  L    F
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 26/245 (10%)

Query: 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203
           + G L   ++L GH  +V  C  +      +++ S D T  +W   TG            
Sbjct: 2   RRGELKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-----V 54

Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263
           GHT  V S  +  +      +              A         +              
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRT------LKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323
           R  +GS D T R++DI TG  L V                      R + +G  +    V
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-------RRVVSGAYDFMVKV 161

Query: 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC 383
           WD      +  L               L  DG  + +GS DT+++V        +     
Sbjct: 162 WDPETETCLHTL------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 215

Query: 384 LKNLV 388
            ++L 
Sbjct: 216 HQSLT 220

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.0 bits (203), Expect = 3e-18
 Identities = 39/327 (11%), Positives = 83/327 (25%), Gaps = 29/327 (8%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAF 117
           +  Q     +  +     ++ ++  S DG L V+      K   +         ++ C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 118 SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
              T   +  G +       +L               L   +        +         
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD--- 121

Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD- 235
                   + D        +      S +T     +    +NS   + G  +S  + +  
Sbjct: 122 ----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 236 --TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV------ 287
                 +  +          +      +   +   S DG   +                 
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 288 ----YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
                      N    V SI FS   + L+   S+G    W+    K + N      +  
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKF 292

Query: 344 GRITCLGLSADGSALCTGSWDTNLKVS 370
              + + ++   + LC  + D   K +
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302
           V+     +  ++ +K  P  +     S DG+  ++      +     Q         +  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLC 61

Query: 303 IAFSISGRLLFAGYSNGDCYVW 324
             F  +  L     +     + 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILK 83

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 3e-17
 Identities = 41/321 (12%), Positives = 88/321 (27%), Gaps = 32/321 (9%)

Query: 54  PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---- 109
           P       TL  H   V ++  ++    + +    G + VW+         +        
Sbjct: 39  PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR 96

Query: 110 -AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 168
             ++ +C   P G ++  GG  S  SI++L +PT +      S   + +   +S    V 
Sbjct: 97  DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156

Query: 169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228
                    +                                  S    ++      +  
Sbjct: 157 FSCCSDGNIAVWDLHNQT--------------LVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
               +    +        H     + ++ + P G     G +     +  +    + Q++
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348
             +        V S+ F+  G+   +   +     W T     +             +  
Sbjct: 263 LHES------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----ESSSVLS 311

Query: 349 LGLSADGSALCTGSWDTNLKV 369
             +S D   + TGS D    V
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 3e-10
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 32/251 (12%)

Query: 58  VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
           V           + S     +   ++   +   L +W+          +L  +     A 
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-----DEDT 172
           + +  S  C    S  +I   +                     +S           D   
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 173 HLITSSGDQTCVLWDITTGLRTSVF------------------------GGEFQSGHTAD 208
                   +     D T+ + +  +                               H + 
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           VLS+  +    + FVS   D+    W T   +   ++       V +     D     TG
Sbjct: 268 VLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTG 324

Query: 269 SDDGTCRLFDI 279
           S D    ++++
Sbjct: 325 SGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 3e-10
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 3/116 (2%)

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
             S  ++       V    D+       R  +R + T   H   V  V          TG
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTG 69

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
              G  +++DI          Q    N   ++ S      G  L  G       +W
Sbjct: 70  GK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 17/148 (11%)

Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296
            + S+   +FH           FP     G G              H  Q+    HGE  
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------HARQINTLNHGEV- 53

Query: 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-NSHEGRITCLGLSADG 355
              V ++  S   R ++ G   G   VWD         +  L   + +  I    L  DG
Sbjct: 54  ---VCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 356 SALCTGSWDTNLKVSLHYYIFVLMPCHC 383
             L  G   + L +         +    
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAEL 137

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 8e-17
 Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 36/314 (11%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
                 +  VY L +     +IVS  +D  + +W+  T +    +      V+   +   
Sbjct: 9   HCRSETSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--- 63

Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
                    D    I   +  T +  ++    ML+    +     ++   +  ++T S D
Sbjct: 64  ---------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 114

Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
           ++  +WD+ +   T +       GH A   +V++   + +  VS S D T ++W+T    
Sbjct: 115 RSIAVWDMAS--PTDITLRRVLVGHRA---AVNVVDFDDKYIVSASGDRTIKVWNTS-TC 168

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             VRT +GH+  +  +++        +GS D T RL+DI  G  L+V             
Sbjct: 169 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226

Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-----NSHEGRITCLGLSADG 355
            +       + + +G  +G   VWD + A                 H GR+    L  D 
Sbjct: 227 DN-------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR--LQFDE 277

Query: 356 SALCTGSWDTNLKV 369
             + + S D  + +
Sbjct: 278 FQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 2e-12
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 75  WTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134
              +   IVSAS D  + VWN  T +    +      +    +    + V  G  D+   
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIR 201

Query: 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
           ++++               L   +G+    + +  ++  +++ + D    +WD+   L  
Sbjct: 202 LWDIECG----------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 251

Query: 195 SVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
               G         H+  V  +          VS S D T  +WD
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 28/271 (10%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
           C R L GH G V  L +    +  V  +      V     +       L           
Sbjct: 47  CKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 102

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
                +     D   +++++ SPTD        R+L GH+  V+   +   +D +++++S
Sbjct: 103 FNNGMMVTCSKDRSIAVWDMASPTDITLR----RVLVGHRAAVNVVDF---DDKYIVSAS 155

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
           GD+T  +W+ +T        G  +         ++      R+ VSGS D+T RLWD   
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKR--------GIACLQYRDRLVVSGSSDNTIRLWDIE- 206

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
               +R   GH  +        D  R  +G+ DG  +++D+      +          + 
Sbjct: 207 CGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264

Query: 299 H----VTSIAFSISGRLLFAGYSNGDCYVWD 325
                V  + F      + +   +    +WD
Sbjct: 265 EHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 54  PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95
           P   +C RTL  H+G+V+ L +     +IVS+S D  +++W+
Sbjct: 254 PAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 243 VRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
           ++  H        V     D  +  +G  D T +++D  T    ++ 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 51

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.7 bits (184), Expect = 1e-15
 Identities = 46/348 (13%), Positives = 91/348 (26%), Gaps = 49/348 (14%)

Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------------P 108
             + H   ++S+   +  +  VS S DG L VW+       +                  
Sbjct: 9   AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQ 165
                    +     VA          + +    +    +     L      K      +
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 166 YVPDEDT----HLITSSGDQTCVLWDITTGLRTSV-----------FGGEFQSGHTADVL 210
           +    D      L+ +    T  +W        S              G  +S  T    
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 211 SVSISGSNSRMFVSGSCDSTARL-----WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
           + S+  S   +  +G  + T ++             +  +   +   + +VKF P G+  
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-----------HVTSIAFSISGRLLFA 314
               D  +     +      +                        V S++F+ SG  L +
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
              +G    WD    + +  L    +  E     L +   G +L    
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 5e-13
 Identities = 30/262 (11%), Positives = 64/262 (24%), Gaps = 40/262 (15%)

Query: 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGE 200
           +  +     H   +             ++ SGD    +WD              S F  +
Sbjct: 4   IATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60

Query: 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR---------VASRAVRTFHGHEG 251
               H   + ++        +  + S       +                 +      + 
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 252 DVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------- 298
               +K+    +     R       GT  ++              +    +         
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 299 -----HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGL 351
                  TS+  S  G L+  G++NG   + +    + + N  S     ++   I  +  
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 352 SADGSALCTGSWDTNLKVSLHY 373
           S  GS L       +      Y
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLY 261

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 40/216 (18%)

Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----RAVRTFHGHEGDVNTVKF 258
            H AD+ SVS         VS S D   ++WD ++           +   H+  ++ V  
Sbjct: 12  AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 259 F-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH-----VTSIAFS 306
                    +     T S  G    + I    + +    +  +            ++ + 
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 307 ISG-----RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS--------------HEGRIT 347
            S        L A    G  Y+W         N  +L  S                   T
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 348 CLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC 383
            + +S  G  + TG  +  +++S    +  L     
Sbjct: 189 SVDISERGL-IATGFNNGTVQISELSTLRPLYNFES 223

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 6e-10
 Identities = 38/359 (10%), Positives = 90/359 (25%), Gaps = 55/359 (15%)

Query: 41  YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALT 98
           +             +          H   V         E   + + S  G L+ +    
Sbjct: 39  WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

Query: 99  SQKTHAIKLPCAWVMTCAFSPTG---------------QSVACGGLDSVCSIFNLNSPTD 143
             +T  +      ++                         +    +     I+  +   D
Sbjct: 99  EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158

Query: 144 KDGNLPVS-----------RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
           +  +L ++                   + +           + T   + T  + +++T  
Sbjct: 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLR 216

Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA---RLWDTRV----------- 238
               F  +    + ++ +          +       ++     L++T             
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276

Query: 239 -ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297
            +S+A      H   V ++ F   G    +   DG  R +D++T  ++      H ++  
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT-LNMHCDDIE 335

Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356
                +A    G  L          V+D    K     G   + +E          D S
Sbjct: 336 IEEDILAVDEHGDSLAEP------GVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 3e-15
 Identities = 19/230 (8%), Positives = 56/230 (24%), Gaps = 10/230 (4%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
                      +       ++          + V++    +   A     +     AF  
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA 188

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
             +++      S+    +          +    ++    G  +  + VP   T    +  
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT--SEAGE 246

Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVSGSCDSTARLWDTR 237
                ++  ++ +              + +L  S  + G  +  +           +D  
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV- 305

Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287
                 R     + ++  ++   D        DDG    F +      + 
Sbjct: 306 ----KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 32/316 (10%), Positives = 63/316 (19%), Gaps = 26/316 (8%)

Query: 65  GHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
               ++  +    +           G  +      + K    +     V        G+ 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH--LITSSGDQ 181
                        +L +            M++      +                    Q
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
              ++D+      +           A         ++S+     S  S     D  V + 
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFD-------ADSKNLYYLSYRSLDPSPDRVVLNF 212

Query: 242 A------VRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQVYYQQHG 293
           +              G  N  K  P       G    +   +                  
Sbjct: 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 272

Query: 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353
           E+ I   +                 G    +D    KV           +  +T L LSA
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--------EVKNNLTDLRLSA 324

Query: 354 DGSALCTGSWDTNLKV 369
           D   +     D  +  
Sbjct: 325 DRKTVMVRKDDGKIYT 340

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 21/275 (7%), Positives = 66/275 (24%), Gaps = 17/275 (6%)

Query: 60  CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
               + + G V+++         V A+    ++  +  T + T   +   A +     S 
Sbjct: 78  AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSS 178
             + +A G                   ++   ++ +               +  +L   S
Sbjct: 138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNS-----RMFVSGSCDSTA 231
                   D      +     +               +   +         ++     ++
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291
            +       R +          +          +    + G    +D++T         +
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TE 312

Query: 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
                  ++T +  S   + +     +G  Y +  
Sbjct: 313 VKN----NLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.3 bits (165), Expect = 3e-13
 Identities = 56/333 (16%), Positives = 86/333 (25%), Gaps = 36/333 (10%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVM 113
             V    L+ H G+V  +DW  + NRIV+   D    VW       + T  I        
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
              ++P  +  A G    V SI       D        + +                   
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC----KHIKKPIRSTVLSLDWHPNSVL 155

Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQ-------------SGHTADVLSVSISGSNSR 220
           L   S D  C ++                             S     V  V  S + SR
Sbjct: 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
           +       ST  L D      AV T       +  V F  + +    G D          
Sbjct: 216 VAWVSHD-STVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
              +L    +     +       A      L     S G                  L +
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS-----------AAAGAGLDS 322

Query: 341 SHEGRITCLGLSADG----SALCTGSWDTNLKV 369
            H+  ++ + + + G    S  CT   D  + +
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.0 bits (146), Expect = 6e-11
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 21/237 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
           C    +     V SLDW      + + S D +  +++A   +                  
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 119 PTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE----- 170
              +S +  G        +  +  +    D  + ++             + +P       
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 252

Query: 171 -DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229
            ++ L+ +  D   VL+   +        G+   G   DV   S     +      + D 
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSA------AGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306

Query: 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN----RFGTGSDDGTCRLFDIRTG 282
            A    +  A   + +   H+  V+ +     G     +F T   DG   ++D+R+ 
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 5/170 (2%)

Query: 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFF 259
           + S     +   + +  +         +    +++        V     H G V  V + 
Sbjct: 2   YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
           PD NR  T   D    ++ ++                   V         +    G  + 
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSR 117

Query: 320 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
              +              ++      +  L    +   L  GS D   ++
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 20/210 (9%)

Query: 32  QLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRL 91
           ++    +          P                  G V+ + +++  +R+   S D  +
Sbjct: 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 225

Query: 92  IVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151
            + +A        +      ++   F      VA G       +F  +S   K       
Sbjct: 226 CLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGK------- 277

Query: 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVL 210
               G               +     +  +     D       S   G    S H   V 
Sbjct: 278 LSFGGRLDVPK--------QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 329

Query: 211 SVSIS---GSNSRMFVSGSCDSTARLWDTR 237
            +S+     +    F +   D    +WD R
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.5 bits (163), Expect = 4e-13
 Identities = 31/319 (9%), Positives = 75/319 (23%), Gaps = 42/319 (13%)

Query: 79  RNRIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSV-ACGGLDSVCSI 135
           R+ I++ ++  +L+V +         I +       M    +P G+   A          
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
            +L +          +        +       PD  T  I  S  +  +        R +
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLF--GAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 196 VFGGEF-----QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--------- 241
           ++  E             +  ++ +   S+++     D      +               
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEA 177

Query: 242 -----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290
                        +                D +     +        D+ TG       +
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350
                          +++     A  +      +D      +  +             + 
Sbjct: 238 IMDVFYFS------TAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-----LPHSYYSVN 286

Query: 351 LSADGSALCTGSWDTNLKV 369
           +S DGS +  G    +L  
Sbjct: 287 VSTDGSTVWLGGALGDLAA 305

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 30/295 (10%), Positives = 68/295 (23%), Gaps = 32/295 (10%)

Query: 62  TLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC----- 115
           T+                     + ++   L+  + +T +    I L             
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNS--PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
           A SP G+++A         + +           +          +            D  
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM------------ 221
            +   G    V+      L        +++   A    +++   +               
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 222 ----FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
                   +  +     D      A+R     +    +    P   R            F
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGAYNVLESF 265

Query: 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332
           D+     ++     H         S+  S  G  ++ G + GD   +D    +  
Sbjct: 266 DLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 24/254 (9%), Positives = 55/254 (21%), Gaps = 27/254 (10%)

Query: 54  PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK------- 106
               +   T +     ++    + +   +       RL + +        A+        
Sbjct: 68  TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127

Query: 107 ----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS 162
                    +   A++  G  +   G D         +      + P+    +       
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV---EDKPIQSWEAETYAQPD 184

Query: 163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNSRM 221
                          +        DI     T+   G       T ++    +   +   
Sbjct: 185 VLAVWNQ-HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 222 F---------VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272
           F          +    +    +D      A            +V    DG+    G   G
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDL--EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 273 TCRLFDIRTGHQLQ 286
               +D  T  +  
Sbjct: 302 DLAAYDAETLEKKG 315

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 5e-13
 Identities = 29/296 (9%), Positives = 75/296 (25%), Gaps = 32/296 (10%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAF 117
             +   GH   + +L  +++   + SA  +G +  W+  T         +    +     
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTD------------------KDGNLPVSRMLSGHKG 159
           +  G        D +  +    S  D                               H  
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
             S  +      ++  +         +    G  + V   +      ++V ++      +
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 220 ----------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
                      +    S                  ++  H   V  V + PD  R  TGS
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
            D +  ++++       +  +           +    ++   + +   + +   W+
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAM---SSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 5e-10
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302
            +  +GH   +  +    DG    +   +G    +DI TG   +V+   H       +T 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT----MITG 60

Query: 303 IAFSISGRLLFAGYSNGDCYVWDT 326
           I  +  G L    + +    V   
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 221 MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
              +GS D++  +W+    S   +     H         + +     +   D   + +++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167
             A V   ++SP    +A G LD+   ++N+N P+D     P+    +     V+   ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAHAMSSVNSVIWL 278

Query: 168 PDEDTHLITSSGDQTCVLWDIT 189
            +  T ++++  D     W++ 
Sbjct: 279 NE--TTIVSAGQDSNIKFWNVP 298

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 32/265 (12%), Positives = 76/265 (28%), Gaps = 15/265 (5%)

Query: 67  AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126
             ++   D   E    V+    G++ + +  T +    +      V     S +G+ +  
Sbjct: 22  TQQMNDWDL--ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFV 78

Query: 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186
            G D   ++ +L     +   +   ++ S  +   +      ++   +  +      V+ 
Sbjct: 79  IGRDGKVNMIDLW--MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 187 D--------ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
           D        I +    +    E+       V ++  S       V+        L D   
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
            +    T    E  ++          F T ++     +       +L       G+   P
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 254

Query: 299 HVTSIAFSISGRLLFAGYSNGDCYV 323
              +     +   ++A    GD  V
Sbjct: 255 GRGANFVHPTFGPVWATSHMGDDSV 279

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 10/154 (6%)

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
             V+        L D                 V+  +    G        DG   + D+ 
Sbjct: 34  FSVTLRDAGQIALIDGS-TYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVL------ 333
                 V   + G       TS       +   A  Y      + D    +         
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 334 -NLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
                 +   E R+  +  S           +T 
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 31/323 (9%), Positives = 72/323 (22%), Gaps = 38/323 (11%)

Query: 61  RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTC 115
             L      V+    ++    +    +DG++ + +    + T   ++       +   + 
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114

Query: 116 AFSPTGQSV-ACGGLDSVCSIFNLNS----PTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
                 +   A         I +  +           +         +  V+        
Sbjct: 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
              ++        +L D T                    L       + R F++ +    
Sbjct: 175 PEFIVNVKETGKILLVDYTDLNNLKTT-----EISAERFLHDGGLDGSHRYFITAANARN 229

Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR---TGHQLQV 287
             +         +       G         +      G    T  + D      G   + 
Sbjct: 230 KLVVIDT-KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288

Query: 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW-DTLLAKVVLNLGSLQNSHEGRI 346
           +     +     +     ++ G  LF        Y++ D  L       GS+        
Sbjct: 289 HPDNAWK-----ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA------- 336

Query: 347 TCLGLSADGSALCTGSWDTNLKV 369
                  D  A+     D   K 
Sbjct: 337 -----VFDIKAMTGDGSDPEFKT 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 1e-12
 Identities = 48/357 (13%), Positives = 100/357 (28%), Gaps = 63/357 (17%)

Query: 62  TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
           TL+GH   V +     E N +++ + D  + V++++  +    +      V    ++  G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
             V+     +V                        +               +++T S D 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTH-------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 182 TCVLWDITTGLRTSVFGGEFQ---------------SGHTADVLSVSISGSNSRMFVSGS 226
           T  +W +         G E                       + SV     +  + VSGS
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178

Query: 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
            D+T  +WD     + +    GH   + +  +  +  R  + S D T R++D+  G  + 
Sbjct: 179 YDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237

Query: 287 VYYQQHGENEIPH----------------------------------VTSIAFSISGRLL 312
                     +                                         F +S  +L
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297

Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
            +G S     +++    K+V    +       +I  +        +     D    +
Sbjct: 298 VSG-SENQFNIYNLRSGKLV---HANILKDADQIWSVNFKGKT-LVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 36/313 (11%), Positives = 86/313 (27%), Gaps = 52/313 (16%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCA 116
               L GH G V++L + +    +VS S D  + VW+      TH  +        +   
Sbjct: 45  FLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 103

Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
                + +  G  D+   ++ L   +    +                  +V     H+ +
Sbjct: 104 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163

Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
                      ++     ++   +        +LS       S ++        +   DT
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 237 RV--------------------------------------------ASRAVRTFHGHEGD 252
            +                                            A+   R F  H  +
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283

Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
           ++ +  F   +       +    ++++R+G  +     +  +     + S+ F     L+
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD----QIWSVNFK-GKTLV 338

Query: 313 FAGYSNGDCYVWD 325
            A   +G  ++  
Sbjct: 339 AAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208
           P    L GH   V  C  +  ED ++IT + D+   ++D               SGH   
Sbjct: 3   PQRTTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGG 55

Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
           V ++  +     +    +  +       +     V   H        +  + +     TG
Sbjct: 56  VWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
           S D T  ++ +     +  + ++H    + H
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.9 bits (156), Expect = 3e-12
 Identities = 30/270 (11%), Positives = 62/270 (22%), Gaps = 7/270 (2%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
            L        H+ +      +       S    G + +W+   +       +P       
Sbjct: 47  SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
             S   +S     +      F      D   +       +     V      P       
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
             +                        S       S+  S       V  +     +   
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG- 225

Query: 236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295
             V          H G V  + + PDG +  + S D T +++++ T    +         
Sbjct: 226 --VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-- 281

Query: 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
                  +    + + L +  +NG     +
Sbjct: 282 --IEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 16/304 (5%)

Query: 68  GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127
           G    L  T   ++I   +    +      +   T               SP+G   A G
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
            +     I++            +   +    G V    +  +                  
Sbjct: 77  DVHGNVRIWD-----TTQTTHILKTTIPVFSGPVKDISWDSESKRI-----AAVGEGRER 126

Query: 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 247
                              A  ++      +    +    D            +   TF 
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP--HVTSIAF 305
            H   V++V++ PDG+ F +   DGT  L++   G +  V+     +N      V  + +
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246

Query: 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365
           S  G  + +  ++    +W+    KV     ++          LG+     AL + S + 
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKV---EKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 366 NLKV 369
            +  
Sbjct: 304 FINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 55  TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVM 113
                      H+G V+ L W+ +  +I SAS D  + +WN  T +    I +       
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 285

Query: 114 TCAFSPTGQSVACGGLDSVCSIFNL 138
                 T Q++     +   +  N 
Sbjct: 286 QLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 8/85 (9%), Positives = 20/85 (23%), Gaps = 5/85 (5%)

Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358
               +  + +G  +    +    Y                   H  + T    S  G   
Sbjct: 19  TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIY----TEHSHQTTVAKTSPSGYYC 73

Query: 359 CTGSWDTNLKVSLHYYIFVLMPCHC 383
            +G    N+++        ++    
Sbjct: 74  ASGDVHGNVRIWDTTQTTHILKTTI 98

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (155), Expect = 3e-12
 Identities = 35/298 (11%), Positives = 86/298 (28%), Gaps = 44/298 (14%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
             +T+ GH   + +L      N ++S S DGR++ W++ +  + H+       +++   S
Sbjct: 5   VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHS-----NLIVSLDNS 55

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK---GYVSCCQYVPDEDTHLI 175
              Q  +    D    +  +            S    G             +      +I
Sbjct: 56  K-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGH-----------------TADVLSVSISGSN 218
            S    +       +    +V   E  +                    A    +SIS S 
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 219 SRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269
           + +                   +       +  +        +    +   + +   TGS
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327
            D    ++ ++   ++      H +     V ++ +     L+ +G ++     W+ +
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKD----GVNNLLWETPSTLVSSG-ADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 9e-05
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 14/84 (16%)

Query: 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300
             ++T  GH   +  +      N   +GS DG    +   + HQ               +
Sbjct: 4   EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNL----------I 49

Query: 301 TSIAFSISGRLLFAGYSNGDCYVW 324
            S+  S +       + +      
Sbjct: 50  VSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205
           G+  V + +SGH   ++     P     LI+ S D   + W  ++  +           H
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ----------DH 45

Query: 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260
           +  ++S+  S +     +S                   +    +      V    
Sbjct: 46  SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 100

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 28/297 (9%), Positives = 71/297 (23%), Gaps = 36/297 (12%)

Query: 65  GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAW------VMTCAF 117
                  +     +     V  +  G +   +  T + T    L          + + A 
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
           SP G+ V      +     +      +       +   ++ +               +D 
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 173 HLITSSGDQTCVLWDITTGLRT-----------------SVFGGEFQSGHTADVLSVSIS 215
            L  +  D   +                             +  +      + + +++  
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216

Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275
             + +   +          D +      + F        T    P       G  +    
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLA 275

Query: 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332
            +D++    ++     H          +AF   G  L+ G +  D  V++    + V
Sbjct: 276 KYDLKQRKLIKAANLDHT------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 29/270 (10%), Positives = 68/270 (25%), Gaps = 24/270 (8%)

Query: 33  LLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLI 92
            +D+D    +     + V       +    +     +VY+    ++R       +  RL 
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 93  VWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGLDSVC---------SIFNLNSP 141
           V++     +   ++       V     +  G     G               ++   N  
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 142 TDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196
                   V               +       D+     T+      +  D+ TG     
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-- 243

Query: 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256
              +  +  T    +   S  +          +    +D     R +      +     V
Sbjct: 244 --TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL--KQRKLIKAANLDHTYYCV 297

Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
            F   G++   G       +F+  T  +++
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 14/169 (8%), Positives = 32/169 (18%), Gaps = 18/169 (10%)

Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
             ++I ++      + D+ +                    +  ++  N   +V  +    
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 231 ARLWDTRVASRAVRTFHG-----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285
               D                      + +    PDG       +               
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 286 QVYYQQ---------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
              +                   V  +  +  G L  AG       V  
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 7/113 (6%)

Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSN 318
                    +      + D+ +    +               +   +   R  +      
Sbjct: 6   AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNNHY 61

Query: 319 GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
           GD Y  D    K     NL S+       +    +S DG  +      T    
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 114

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 6e-11
 Identities = 33/284 (11%), Positives = 92/284 (32%), Gaps = 18/284 (6%)

Query: 53  GPTDLVCCRTLQGHAGK-VYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAIKLPC 109
           G + +       GH    V ++ ++  +    + S  + G++IVW     ++++++++  
Sbjct: 48  GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107

Query: 110 --------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161
                     +   ++   G+ +   G         ++  +           +SGH   +
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-----LGEVSGHSQRI 162

Query: 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221
           + C          +T   D + V +       ++      + G     +  S       +
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222

Query: 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
            V      +     +    + +               + D  +F T   D T R++D+ T
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

Query: 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
              +Q  +    +        +  + +GR++ +   +G    ++
Sbjct: 283 SKCVQK-WTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 6/223 (2%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
                Q  AG +  + W  E  R+    +                  ++           
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINAC 165

Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
              QS     +        +             R       +V   ++ PD    +IT  
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
            D+    +D  +G        + +          ++S  +S+ F +   D+T R+WD   
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIF---ALSWLDSQKFATVGADATIRVWDVTT 282

Query: 239 ASR-AVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDI 279
           +      T    +     V     GN R  + S DGT   +++
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 32/266 (12%), Positives = 64/266 (24%), Gaps = 12/266 (4%)

Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVP 168
            +    ++ PT  ++A     S      +    D D  +P     +GH    V+  ++ P
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAF----VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 169 DED-THLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISGSNSRM-FV 223
            +   +L +       ++W  T    ++                +  +S      R+  V
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283
               D+          +         +             R  T  DDG+   +      
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
                   H +     V  + FS           +          +   L          
Sbjct: 194 FSASDRTHHKQGS--FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 251

Query: 344 GRITCLGLSADGSALCTGSWDTNLKV 369
                     D     T   D  ++V
Sbjct: 252 QGGIFALSWLDSQKFATVGADATIRV 277

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 2/104 (1%)

Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
             V+        L D   + + V+        V+  +    G        D    + D+ 
Sbjct: 34  FSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
                +V   + G       +S       R   AG      +  
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 26/279 (9%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 73  LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
            D        V+    G++ + +  + +    I      V     S +G+ +   G D+ 
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84

Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
             + +L     +   +   ++    +   S      ++   +  +       + D  T  
Sbjct: 85  IDMIDLW--AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 193 RTSVFGGEFQSGHTADVLS----VSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTF 246
              +      +  T          +I  S+       +   T ++             T 
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306
            G    +    +      F T +++            +L                +    
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP 262

Query: 307 ISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEG 344
             G +    +  +G   +  T                +G
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 301

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 34/299 (11%), Positives = 75/299 (25%), Gaps = 38/299 (12%)

Query: 61  RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119
           +          S     E R  I  A    +  + +  T +    +      V T  + P
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161

Query: 120 TGQSVACGGLDSVCSIFNLNSPTDK------DGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
             +  A                T K           ++    G   +++   +       
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF 221

Query: 174 LITSSGDQTCVLWDITTGLRTSVF----------GGEFQSGHTADVLSVSISGSNSRMFV 223
           +  ++      + D      +++           G  F       V S S  G +  + +
Sbjct: 222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-DGSISL 280

Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-------GTGSDDGTCRL 276
            G+       +  +     V    G  G    +K  P  +                +  +
Sbjct: 281 IGTDPKNHPQYAWKK----VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336

Query: 277 FDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGD----CYVWDT 326
           FD++        L +            V    ++  G  + F+ ++  +      V D 
Sbjct: 337 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 9/119 (7%)

Query: 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD- 325
           T  D G   L D  +   ++V     G     H      S SGR L     +    + D 
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVI--DTGYA--VH--ISRMSASGRYLLVIGRDARIDMIDL 90

Query: 326 -TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC 383
                  V  +           +      +      G++       +            
Sbjct: 91  WAKEPTKVAEIKIGIE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS 148

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 25/261 (9%), Positives = 56/261 (21%), Gaps = 22/261 (8%)

Query: 59  CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAW 111
             R L G    + SL    +       S    + V +         + +       P A 
Sbjct: 99  APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 158

Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
                    G                       +    ++      K             
Sbjct: 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTG 216

Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH------TADVLSVSISGSNSRMFVSG 225
                               L  +     ++ G          +  + +       +   
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGH 283
           +      + D    +           +++++    D     +   + D T  + D  +G 
Sbjct: 277 TASRFVVVLDA--KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334

Query: 284 QLQVYYQQHGENEIPHVTSIA 304
           +L+    Q G    P V + A
Sbjct: 335 ELRS-VNQLGHG--PQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 22/179 (12%), Positives = 40/179 (22%), Gaps = 24/179 (13%)

Query: 209 VLSVSISGSNSRMFVS----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264
            +  + +    R++V+     +  +   + D   A R +    G  G +       DG+ 
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDG--GFLPNPVVADDGSF 60

Query: 265 F----------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFSISGRLL 312
                        G       +FD  T                   +    + +  G+ L
Sbjct: 61  IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

Query: 313 FAGYSNGD--CYVWDTLLAKVVLNL---GSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
                +      V D         L              T      DGS          
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 29/227 (12%), Positives = 56/227 (24%), Gaps = 26/227 (11%)

Query: 56  DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PC 109
           DL      +          + +  +      +DG L      T                 
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT-----DKDGNLPVSRMLSGHKGYVSCC 164
             +   A+S     +            +L+S         +      R      G     
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 165 QYVPD---------EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
            Y            +       +  +  V+ D  TG R + F      GH  D ++VS  
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQD 310

Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262
                ++   + D T  + D   +   +R+ +        +     G
Sbjct: 311 E-KPLLYALSTGDKTLYIHDAE-SGEELRSVNQLGHGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.1 bits (121), Expect = 9e-08
 Identities = 15/239 (6%), Positives = 49/239 (20%), Gaps = 23/239 (9%)

Query: 64  QGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC------- 115
                +V+ +   +    +             +   +      K    + +         
Sbjct: 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHY 179

Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
             S      A     +  +   + +      N       + + G +          + L 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML----VWAVASSILQ 235

Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS------GSCDS 229
                    +     G  +      F    +A    V+   +   + +           +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNF---RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292

Query: 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGHQLQ 286
                    +         +  D + +    DG    +   +      ++D  +     
Sbjct: 293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 23/181 (12%), Positives = 35/181 (19%), Gaps = 18/181 (9%)

Query: 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 261
             G + D          S + +      T   W +          H     ++       
Sbjct: 18  SDGSSCDH-GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG-HSLGAFLSLAVAGHS 75

Query: 262 G----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISG 309
           G           R   G       +FD  T   +           +  P V  I    S 
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 310 R-LLFAGYSNGDCYVWDTLLAKVVLNL---GSLQNSHEGRITCLGLSADGSALCTGSWDT 365
             LLF  + +          A                    T    S   S   +     
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195

Query: 366 N 366
            
Sbjct: 196 P 196

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 221 MFVSGSCDSTARLWDT-RVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFD 278
           ++++        +W+     +  +       G V  +   PD    +     +     + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
           I        +  +        +T I+    G+ +F G  N      
Sbjct: 66  IAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLF 277
           +  +++ S      + D   +++   T              PDG + +   +      + 
Sbjct: 2   TFAYIANSESDNISVIDVT-SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSII 59

Query: 278 DIRTGHQLQVYYQQHGENEIPH 299
           D  T + +           +  
Sbjct: 60  DTATNNVIATVPAGSSPQGVAV 81

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
           I +S      + D+T+   T+           ++ +   IS   ++++V+ +  +   + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANAHSNDVSII 59

Query: 235 DT 236
           DT
Sbjct: 60  DT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 34/275 (12%), Positives = 73/275 (26%), Gaps = 26/275 (9%)

Query: 83  VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSP 141
           ++ S+   + V +  +++ T  I +  +  M    SP G  V       +  SI +  + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201
                    S              YV +  +  ++     +  +       ++ +     
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD----------------TRVASRAVRT 245
             G    V +      +    V+ +  +T  +                      S ++  
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 246 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI-------P 298
                  V               + +GT         +   V     G N+I       P
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 299 HVTSIAFSISGRLLF-AGYSNGDCYVWDTLLAKVV 332
               IA +  G+ ++ A        V DT    + 
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.87
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.68
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.42
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.3
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.96
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.87
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.46
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.37
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.12
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.74
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.69
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.55
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.51
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.41
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.96
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.02
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.97
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.82
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.75
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.34
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.37
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.29
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.22
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.53
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.35
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.36
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	88.71
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.35

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-50  Score=345.91  Aligned_cols=337  Identities=47%  Similarity=0.926  Sum_probs=284.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcE
Q 016522           12 HAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRL   91 (388)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v   91 (388)
                      .+++++|.+++++++++.+....+.............    ....++..++|+||.++|++++|+|++++||||+.||+|
T Consensus         4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v   79 (340)
T d1tbga_           4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPV----GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL   79 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCC----CCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcc----cccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCce
Confidence            3444555555566666655555444444333322222    235567889999999999999999999999999999999


Q ss_pred             EEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC
Q 016522           92 IVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED  171 (388)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (388)
                      +|||+.+++.+..+..|...|.+++|+|++.++++|+.|+.+.+|+.....   ........+.+|............  
T Consensus        80 ~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--  154 (340)
T d1tbga_          80 IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDD--  154 (340)
T ss_dssp             EEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC---SCCCEEEEECCCSSCEEEEEEEET--
T ss_pred             eeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc---cccccceecccccccccccccccc--
Confidence            999999999999999999999999999999999999999999999987744   233355667788877777666664  


Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  251 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  251 (388)
                      ..+.....|.....++..........     ..+...+....+.+ ...++++|+.|+.|++||+++. ..+..+.+|..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~-~~~~~~~~h~~  227 (340)
T d1tbga_         155 NQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHES  227 (340)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEEECCCSS
T ss_pred             cccccccccccccccccccccccccc-----cccceeEeeecccc-ccceeEEeecCceEEEEECCCC-cEEEEEeCCCC
Confidence            46888899999999998887776666     57778888888888 8889999999999999999987 78889999999


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      .|++++|+|++++|++|+.||.|++||++.......+..   ..+...+.+++|+|++++|++|+.||.|++||+.+++.
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE
Confidence            999999999999999999999999999998887766543   33445699999999999999999999999999999999


Q ss_pred             EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      +..+    .+|.++|++++|+|++++|++|+.||.|+||+
T Consensus       305 ~~~~----~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         305 AGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEE----CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEE----cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9998    78999999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-49  Score=336.56  Aligned_cols=303  Identities=19%  Similarity=0.320  Sum_probs=259.6

Q ss_pred             CCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-----EeeeCCccEEEEEECC
Q 016522           45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSP  119 (388)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~  119 (388)
                      .+......-|...+.++++ +|...|+|++|+|+|++|++|+ ||.|+|||+.++....     ....|...|.+++|+|
T Consensus        30 ~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~  107 (337)
T d1gxra_          30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP  107 (337)
T ss_dssp             TTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT
T ss_pred             CcceecCCCCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC
Confidence            3333333345566777777 6999999999999999999987 8999999997654322     2346788899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      ++++|++|+.||.|++||+....     ......+..|...+.+++|+|++ .++++++.|+.|++||+.+++.....  
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~--  179 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF--  179 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred             CCCEEEEeecccccccccccccc-----ccccccccccccccccccccccc-cccccccccccccccccccccccccc--
Confidence            99999999999999999987643     23556678899999999999986 68999999999999999999888777  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                         ..|...+.+++|++ ++..+++++.||.+++||+++. +.+..+ .|...|.+++|+|++++|++++.||.+++||+
T Consensus       180 ---~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~  253 (337)
T d1gxra_         180 ---QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ---CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ---cccccccccccccc-cccccccccccccccccccccc-eeeccc-ccccceEEEEEcccccccceeccccccccccc
Confidence               78899999999998 8889999999999999999877 555554 47889999999999999999999999999999


Q ss_pred             CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522          280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  359 (388)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  359 (388)
                      +++......      .+...|++++|+|++++|++|+.||.|++||+.+++.+..+     .|.+.|++++|+|++++|+
T Consensus       254 ~~~~~~~~~------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         254 NKPDKYQLH------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             TSSCEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEE
T ss_pred             ccccccccc------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-----cCCCCEEEEEEeCCCCEEE
Confidence            988765432      23446999999999999999999999999999999988775     5788999999999999999


Q ss_pred             EccCCCeEEEeccce
Q 016522          360 TGSWDTNLKVSLHYY  374 (388)
Q Consensus       360 s~~~dg~v~iw~~~~  374 (388)
                      +|+.||.|+||+.-|
T Consensus       323 t~s~D~~I~vWdl~~  337 (337)
T d1gxra_         323 TGSGDKKATVYEVIY  337 (337)
T ss_dssp             EEETTSCEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEC
Confidence            999999999998643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-48  Score=330.11  Aligned_cols=296  Identities=25%  Similarity=0.381  Sum_probs=270.2

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD  130 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  130 (388)
                      .|.|.+ ...++|+||+++|++|+|+|++++|+||+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.+
T Consensus         2 ~w~p~~-~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCC-CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            465554 3457899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      +.+.+|+.....       ....+..|...+.++.+++++ ..+++++.|+.+++||++++.....+     ..|...+.
T Consensus        81 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~  147 (317)
T d1vyhc1          81 MTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVR  147 (317)
T ss_dssp             SCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEE
T ss_pred             cccccccccccc-------cccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEE-----ccCCCcce
Confidence            999999988744       566677899999999999987 67999999999999999999988888     68899999


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--------------------CCEEEEeeC
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGTGSD  270 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~  270 (388)
                      +++++| ++.+|++++.||.|++|+.... .....+..|...+.+++|+|+                    +.++++++.
T Consensus       148 ~~~~~~-~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         148 MVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             eeeccc-CCCEEEEEeCCCeEEEEeeccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            999998 8899999999999999999987 788888899999999999875                    357899999


Q ss_pred             CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522          271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  350 (388)
Q Consensus       271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  350 (388)
                      |+.|++||+++++.+..+..+     ...|.+++|+|++++|++|+.||.|++||+.+++.+..+    .+|.++|++++
T Consensus       226 d~~i~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~~~  296 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTLVGH-----DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLD  296 (317)
T ss_dssp             TSEEEEEETTTTEEEEEEECC-----SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCC-----CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE----cCCCCCEEEEE
Confidence            999999999999988877543     345999999999999999999999999999999998888    78999999999


Q ss_pred             ECCCCCeEEEccCCCeEEEec
Q 016522          351 LSADGSALCTGSWDTNLKVSL  371 (388)
Q Consensus       351 ~~~~~~~l~s~~~dg~v~iw~  371 (388)
                      |+|++++|++|+.||.|+||.
T Consensus       297 ~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         297 FHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-47  Score=328.38  Aligned_cols=313  Identities=19%  Similarity=0.348  Sum_probs=253.1

Q ss_pred             ccccCCCCCcccCCCCcee----eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee---------
Q 016522           41 YSRSQGRAPVSFGPTDLVC----CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL---------  107 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~----~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------  107 (388)
                      .....+.....|+|...+.    +....+|++.|+||+|+|+|++||+|+ |++|+|||+.+++.+..+..         
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence            3344455556677654332    223346999999999999999999986 89999999999888766643         


Q ss_pred             ---------CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee
Q 016522          108 ---------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (388)
Q Consensus       108 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (388)
                               +...|++++|+|++++|++|+.||.|++|+...+.       ......+|...|.++.+++++ ..+++++
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~~~~~~  182 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGS  182 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccc-------ccccccccccccccccccccc-ccccccc
Confidence                     45669999999999999999999999999998754       667788899999999999986 6799999


Q ss_pred             CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE-------EecccC
Q 016522          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEG  251 (388)
Q Consensus       179 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~  251 (388)
                      .++.+++||..+.......      .+.....++.+.+.++.+|++|+.||.|++||.++. .....       ..+|..
T Consensus       183 ~~~~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         183 GDRTVRIWDLRTGQCSLTL------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKD  255 (388)
T ss_dssp             TTSEEEEEETTTTEEEEEE------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSS
T ss_pred             cceeeeeeecccccccccc------ccccccccccccCCCCCeEEEEcCCCeEEEeecccC-ccceeeccccccccCCCC
Confidence            9999999999998877765      344556677777778999999999999999999876 33333       346888


Q ss_pred             CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc-------CCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522          252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  324 (388)
Q Consensus       252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (388)
                      .|.+++|+|++++|++++.||.|++||++++..........       ...+...|.+++|+|++++|++|+.||.|++|
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            99999999999999999999999999998765433221110       12244569999999999999999999999999


Q ss_pred             EcccceEEeeccCCCCCcCCCeeEEEE------CCCCCeEEEccCCCeEEEeccc
Q 016522          325 DTLLAKVVLNLGSLQNSHEGRITCLGL------SADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      |+.+++.+..+    .+|.+.|+++++      +|++.+|++|+.||+|+||+..
T Consensus       336 d~~~~~~~~~l----~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         336 DKKSGNPLLML----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ETTTCCEEEEE----ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ECCCCcEEEEE----eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999998    789999999975      5789999999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-46  Score=313.16  Aligned_cols=292  Identities=17%  Similarity=0.189  Sum_probs=248.0

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      +++.+.+++++|+|+.|+.++ ++.|.+||+.++.....+..|...|++++|+|+|++|++|+.||.|++||+....   
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~---   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT---   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT---
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc---
Confidence            556677899999999999886 5679999999999999999999999999999999999999999999999998754   


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV  223 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  223 (388)
                        ......+..|.++|.+++|+|++ .++++++.  +..+++|++.+++....+     ..|...|.+++|+|.+...++
T Consensus        92 --~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l-----~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1          92 --HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNL-----TGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             --CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCC-----CCCSSCEEEEEECSSSSCEEE
T ss_pred             --cccccccccccCccccccccccc-cccccccccccccccccccccccccccc-----cccccccccccccccceeeec
Confidence              22445678899999999999987 56777765  456999999998887776     788999999999995555789


Q ss_pred             EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeE
Q 016522          224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVT  301 (388)
Q Consensus       224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~  301 (388)
                      +|+.||.|++||+++. +....+..|..+|+++.|+|++++|++++.||.|++||+.++.....+.....  ..|...|+
T Consensus       164 sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             EEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             cccccccccccccccc-ccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999987 78888889999999999999999999999999999999999888776644322  23566799


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +++|+|++++|++|+.||.|+|||+++++.+.++... ..+...+.++.|+  +..|++++.||.|++|+++
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC-CCccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999999999999998887321 1122344555554  5679999999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-44  Score=299.42  Aligned_cols=296  Identities=11%  Similarity=0.121  Sum_probs=232.8

Q ss_pred             eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      +..+.++||.++|++++|+|++++|+||+.||+|++||+.+++....+. .|...|++++|+|++.+ ++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence            5678999999999999999999999999999999999999999888774 67889999999999975 556679999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      +.......    ........+...+.++++++++ .++ +++.++.+.+|+...  ....       .....+.+++++|
T Consensus        82 ~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~g-~~~-~~~~~~~i~~~~~~~--~~~~-------~~~~~~~~~~~s~  146 (299)
T d1nr0a2          82 PAGGSGVD----SSKAVANKLSSQPLGLAVSADG-DIA-VAACYKHIAIYSHGK--LTEV-------PISYNSSCVALSN  146 (299)
T ss_dssp             CSSSSSSC----TTSCCEEECSSCEEEEEECTTS-SCE-EEEESSEEEEEETTE--EEEE-------ECSSCEEEEEECT
T ss_pred             ccCCcccc----cccccccccccccccccccccc-ccc-ccccccccccccccc--cccc-------ccccccccccccc
Confidence            98764321    1122334567788999999987 444 445567899998542  2222       2334678899998


Q ss_pred             CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522          217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                       +++++++|+.||.|++||++...........|...|.+++|+|++++|++++.|+.|++||+.++.........  ..+
T Consensus       147 -~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~h  223 (299)
T d1nr0a2         147 -DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW--TFH  223 (299)
T ss_dssp             -TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC--CCC
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence             88999999999999999998763333345678999999999999999999999999999999887665444322  234


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ...|++++|+|++++|++|+.||.|++||+.++........ ...+...|.++.| +++.+|++|+.||.|++|+..|
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~~  299 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVPF  299 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECCC
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe-cCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEeccC
Confidence            56799999999999999999999999999987543221111 0334556777766 5677999999999999998754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.7e-44  Score=308.17  Aligned_cols=294  Identities=17%  Similarity=0.253  Sum_probs=237.5

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK  144 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  144 (388)
                      .++|+|++|+|+|++||+|+.||.|+|||..+++  .+..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+..  
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--
Confidence            4689999999999999999999999999998765  567778899999999999999999999999999999998643  


Q ss_pred             CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                         ......+.+|...|.+++|+|++ +.+++++.|+.|++|++........... ....|...|.+++|+| ++.+|++
T Consensus        85 ---~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p-~~~~l~s  158 (371)
T d1k8kc_          85 ---WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKH-IKKPIRSTVLSLDWHP-NSVLLAA  158 (371)
T ss_dssp             ---EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEE-ECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             ---ccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccc-cccccccccccccccc-cccceec
Confidence               22345567889999999999996 6899999999999999887654433321 1257889999999999 8899999


Q ss_pred             eeCCCceEEEECCCCC-----------------cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          225 GSCDSTARLWDTRVAS-----------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      |+.||.|++||.....                 ........|...|.+++|+|++++|++++.|+.|++||+.++..+..
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee
Confidence            9999999999986431                 23455677889999999999999999999999999999999988887


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc--cceEEeec------------------------------
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--LAKVVLNL------------------------------  335 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~------------------------------  335 (388)
                      +..+.     .+|.+++|+|++++|++|. |+.+++|...  .+......                              
T Consensus       239 ~~~~~-----~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         239 LASET-----LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             EECSS-----CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eeccc-----ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence            75533     3599999999998888764 6766665533  22221110                              


Q ss_pred             -----cCCCCCcCCCeeEEEECCCC----CeEEEccCCCeEEEeccce
Q 016522          336 -----GSLQNSHEGRITCLGLSADG----SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       336 -----~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~v~iw~~~~  374 (388)
                           ......|.+.|+++++.+.+    ..++|+|.||.|+||+...
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                 00112488899999997744    3589999999999998754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.8e-43  Score=294.22  Aligned_cols=262  Identities=17%  Similarity=0.222  Sum_probs=224.2

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee--eEeeeCCccEEEEEECCCCCEEE
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      .+..|+.......+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.++...  ..+..|..+|.+++|+|++++|+
T Consensus        39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~  118 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA  118 (311)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccc
Confidence            3556777888888899999999999999999999999999999999999887654  45778899999999999999999


Q ss_pred             EeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          126 CGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       126 ~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      +++.  +..+++|++++..       ....+.+|...|.+++|+|+++..+++|+.||.|++||+++++....+     .
T Consensus       119 ~~~~~~~~~~~v~~~~~~~-------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-----~  186 (311)
T d1nr0a1         119 AVGEGRERFGHVFLFDTGT-------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-----G  186 (311)
T ss_dssp             EEECCSSCSEEEEETTTCC-------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-----C
T ss_pred             ccccccccccccccccccc-------ccccccccccccccccccccceeeeccccccccccccccccccccccc-----c
Confidence            9876  4569999998755       445678899999999999998777899999999999999999888887     7


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-------ecccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  276 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  276 (388)
                      .|...|.++.++| +++++++++.||.|++||.... .....+       .+|...|.+++|+|++++|++|+.||.|++
T Consensus       187 ~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~i  264 (311)
T d1nr0a1         187 EHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  264 (311)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccccCc-cccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEE
Confidence            8999999999999 8899999999999999999876 444433       358889999999999999999999999999


Q ss_pred             EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      ||+++++.+..+......  ...+.++.|  ++..|++++.||.|++||.+
T Consensus       265 wd~~t~~~~~~l~~~~~~--~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         265 WNVATLKVEKTIPVGTRI--EDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EETTTTEEEEEEECCSSG--GGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EECCCCcEEEEEECCCCc--cceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            999999988877543221  122444444  56689999999999999963

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=281.50  Aligned_cols=302  Identities=23%  Similarity=0.332  Sum_probs=235.3

Q ss_pred             cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522           52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS  131 (388)
Q Consensus        52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  131 (388)
                      |+..+.++.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++.+.++..|...|.+++|+|+  +|++|+.|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            344567788899999999865 35667899999999999999999999999999999999999999874  999999999


Q ss_pred             cEEEEeCCCCCCCC----CCC-----------------------------ceeEEecccccceEEEEEEeCCCceEEEee
Q 016522          132 VCSIFNLNSPTDKD----GNL-----------------------------PVSRMLSGHKGYVSCCQYVPDEDTHLITSS  178 (388)
Q Consensus       132 ~i~vw~~~~~~~~~----~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (388)
                      .+++|+........    ...                             .....+..+..  ......+. ...+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~  154 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--AVRCVQYD-GRRVVSGA  154 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS--CEEEEEEC-SSCEEEEE
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc--cceeeccc-cceeeeec
Confidence            99999987643100    000                             00000000000  11122233 35688899


Q ss_pred             CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE
Q 016522          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  258 (388)
Q Consensus       179 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~  258 (388)
                      .|+.|++||.........+     ..|...+..+.+   ++.++++++.||.|++||++.. ..+..+.+|...+.++++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~  225 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTL-----QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL  225 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEE-----CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE
T ss_pred             CCCeEEEeecccceeeEEE-----cCcccccccccC---CCCEEEEEeCCCeEEEeecccc-eeeeEecccccceeEEec
Confidence            9999999999988888877     677776666555   5678999999999999999987 788889999999988887


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-  337 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  337 (388)
                      +  +++|++++.||.|++||+...+....+....  .+...+.++.++  ++++++|+.||.|++||+++++.+..+.. 
T Consensus       226 ~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~  299 (342)
T d2ovrb2         226 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTL  299 (342)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTCCEEEEECSTT--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred             C--CCEEEEEcCCCEEEEEecccccccccccccc--eeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence            6  5699999999999999999888776664432  234456666664  56999999999999999999998877642 


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCCe----EEEeccce
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDTN----LKVSLHYY  374 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----v~iw~~~~  374 (388)
                      ...+|.+.|++++|+|++.+|++|+.||+    |++|+...
T Consensus       300 ~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            22468889999999999999999999985    78887653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-39  Score=277.25  Aligned_cols=288  Identities=18%  Similarity=0.280  Sum_probs=228.0

Q ss_pred             eeccccccCCe-eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           60 CRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        60 ~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.+++.+.++..|...|.+++|+|+ .+|++|+.||.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            56799999875 66665  5789999999999999999999999999999999999999985 58999999999999998


Q ss_pred             CCCCCCC-----CC-------------------------------------------------------CceeEEecccc
Q 016522          139 NSPTDKD-----GN-------------------------------------------------------LPVSRMLSGHK  158 (388)
Q Consensus       139 ~~~~~~~-----~~-------------------------------------------------------~~~~~~~~~~~  158 (388)
                      .......     ..                                                       .........|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            8643100     00                                                       00000001111


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  238 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  238 (388)
                      ..+  ..+.+++ .+++++..|+.|++||+.+++.....     ..+...+.++.++| .+.++++++.|+.|++||.++
T Consensus       162 ~~v--~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         162 ASV--RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             SCE--EEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT
T ss_pred             ccc--ccccccc-ceeeeecccceeeeeecccccceeee-----eccccccccccccc-cceeeecccccceEEeeeccc
Confidence            112  2233443 67899999999999999999888877     67888999999998 888999999999999999998


Q ss_pred             CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEE-EEecCCCCEEEEEec
Q 016522          239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYS  317 (388)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~  317 (388)
                      . ..+..+.+|...|.+++++  +++|++++.||.|++||+++.........  .     .+.. ..+++++.++++| .
T Consensus       233 ~-~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~l~~g-~  301 (355)
T d1nexb2         233 G-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--T-----NLSAITTFYVSDNILVSG-S  301 (355)
T ss_dssp             C-CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC--T-----TCCCCCEEEECSSEEEEE-E
T ss_pred             c-ccccccccccccccccccc--cceeeeeecccccccccccccceeccccc--C-----CceEEEEEcCCCCEEEEE-e
Confidence            7 7888999999999999996  46999999999999999998765544322  1     1333 3567777777766 5


Q ss_pred             CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ||.|++||+++++.+....   .+|.++|++++|+|+ .++++++.||.++||...+
T Consensus       302 d~~i~vwd~~tg~~~~~~~---~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         302 ENQFNIYNLRSGKLVHANI---LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             TTEEEEEETTTCCBCCSCT---TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEe---cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEeC
Confidence            8999999999998775321   689999999999987 4788899999999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-39  Score=274.42  Aligned_cols=258  Identities=16%  Similarity=0.224  Sum_probs=224.8

Q ss_pred             CCCCcccCCCCce-----eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCccEEEEEEC
Q 016522           46 GRAPVSFGPTDLV-----CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFS  118 (388)
Q Consensus        46 ~~~~~~~~~~~~~-----~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~  118 (388)
                      ++.+..|+.....     ......+|.+.|.+++|+|++++|++|+.||.|++||+...  +....+..|...+.+++|+
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  150 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence            4557778754332     23345689999999999999999999999999999998754  4556677888999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522          119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      |++.++++++.|+.|++|++.++.       .......|...|.+++|++++ ..+++++.||.|++||+++++.+..+ 
T Consensus       151 ~~~~~l~s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~-  221 (337)
T d1gxra_         151 PDSKVCFSCCSDGNIAVWDLHNQT-------LVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQH-  221 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             cccccccccccccccccccccccc-------ccccccccccccccccccccc-cccccccccccccccccccceeeccc-
Confidence            999999999999999999998754       667778899999999999986 68999999999999999999887775 


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                           .+...|.+++|+| +++++++++.||.+++||++.. . ......|...|++++|+|++++|++++.||.|++||
T Consensus       222 -----~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~-~-~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         222 -----DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             -----ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -----ccccceEEEEEcc-cccccceecccccccccccccc-c-cccccccccccceEEECCCCCEEEEEeCCCeEEEEE
Confidence                 5778999999999 8899999999999999999876 3 345677999999999999999999999999999999


Q ss_pred             CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +.+++.+.....      ...|.+++|+|++++|++|+.||.|+|||+
T Consensus       294 ~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         294 TPYGASIFQSKE------SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTTCCEEEEEEC------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEccC------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999988876532      335999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-38  Score=263.72  Aligned_cols=266  Identities=21%  Similarity=0.326  Sum_probs=243.9

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT  120 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  120 (388)
                      .+.+.+..+..|+..+.+++.++.+|.+.|.+++|+|++.++++++.++.+.+|+....+....+..+...+.++.|+|+
T Consensus        33 ~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          33 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            45567888999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522          121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      ++.+++++.|+.+++|++.++.       ....+.+|...+.+++|++++ .++++++.|+.|++|++.++.....+   
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~---  181 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL---  181 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE---
T ss_pred             CceEEeeccCcceeEeecccce-------eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEE---
Confidence            9999999999999999998755       677788999999999999986 68999999999999999999988888   


Q ss_pred             cccCCccCeEEEEeeCCC-------------------CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC
Q 016522          201 FQSGHTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  261 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  261 (388)
                        ..+...+.++.++|..                   +.++++++.||.|++||++++ .++..+.+|...|.+++|+|+
T Consensus       182 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~  258 (317)
T d1vyhc1         182 --REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSG  258 (317)
T ss_dssp             --CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSS
T ss_pred             --ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCC
Confidence              6788889999888632                   357899999999999999987 788899999999999999999


Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +++|++|+.||.|++||+.+++.+..+..+     ...|++++|+|++++|++|+.||.|++||
T Consensus       259 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-----~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         259 GKFILSCADDKTLRVWDYKNKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEETTTEEEEECCTTSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999988887543     34699999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-38  Score=270.90  Aligned_cols=250  Identities=14%  Similarity=0.144  Sum_probs=206.5

Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      ...+|+|++|+|+|++|++|+.||.|++|++.+++     ......+.+|.++|.+++|+|++ ++|++++.|+.|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEe
Confidence            34679999999999999999999999999997633     33567788999999999999987 6899999999999999


Q ss_pred             cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEEEEccCCCE
Q 016522          188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNR  264 (388)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~  264 (388)
                      +.++.....+..   ..|...|.+++|+| +++.|++++.|+.+++|++......   ......|...|.+++|+|++++
T Consensus        80 ~~~~~~~~~~~~---~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_          80 LKGRTWKPTLVI---LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             EETTEEEEEEEC---CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             eccccccccccc---cccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccc
Confidence            988765544321   56888999999999 8899999999999999998765322   2334568889999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCceeeEe-------------eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          265 FGTGSDDGTCRLFDIRTGHQLQVY-------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       265 l~~~~~dg~i~i~d~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                      |++|+.|+.|++|++.........             .......+...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            999999999999998654321110             0011134556799999999999999999999999999999999


Q ss_pred             EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +..+    ..|..+|.+++|+|++++|++|. |+.+++|..
T Consensus       236 ~~~~----~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         236 VATL----ASETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             EEEE----ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eeee----ecccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            9888    78999999999999998777654 788888764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-37  Score=263.02  Aligned_cols=293  Identities=16%  Similarity=0.149  Sum_probs=220.9

Q ss_pred             CeeEEEeCCCCCeEEEEeCCC-cEEEEECCCC--CeeeEeeeCC-ccEEEEEECC--CCCEEEEeeCCCcEEEEeCCCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDG-RLIVWNALTS--QKTHAIKLPC-AWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPT  142 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~  142 (388)
                      .+++++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||.|++||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467999999999999887654 3556665443  3355666664 6799999998  56899999999999999997643


Q ss_pred             CCCC-CCceeEEecccccceEEEEEEeCCCceEEEee--CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          143 DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       143 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      .... .......+..|.++|.+++|++++. ++++++  .++.+.+|+..+++.+..+     ..|...|.+++|+|.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEV-----SGHSQRINACHLKQSRP  172 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCCEEEEC-----CSCSSCEEEEEECSSSS
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEeecccccceee-----eeccccccccccccccc
Confidence            2111 1112234567889999999999974 555444  4778999999999988888     78999999999999666


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEE---ecccCCeeEEEEccC-CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                      .++++++.||.+++||.... +.....   ..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+.. .
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~  250 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-P  250 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-C
T ss_pred             ceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-c
Confidence            67889999999999998765 333333   456778999999996 68899999999999999999998887754332 2


Q ss_pred             CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC-CCeEEEccCCCeEEEecc
Q 016522          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~  372 (388)
                      ....+.++.| |+|++|++++.|+.|+|||+.+++.+..+..  ..+...+..+++.+. +.+|++|+.||.|+||+.
T Consensus       251 v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         251 VQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL--DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe--cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            2223444444 6889999999999999999999998887732  223333444444332 347899999999999973

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=251.81  Aligned_cols=281  Identities=23%  Similarity=0.373  Sum_probs=224.9

Q ss_pred             CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522           56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI  135 (388)
Q Consensus        56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  135 (388)
                      .++.++.+.+|...|+|++|  ++++||||+.||+|+|||+.+++.+.++.+|...|++++|  ++++|++|+.||.|++
T Consensus         4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             eEEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            34566677889999999875  6889999999999999999999999999999999999887  6789999999999999


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                      |++..+.       .......+....  ..+.+. ...++++..++.+.+||.............  ..|...+..+.+.
T Consensus        80 ~~~~~~~-------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  147 (293)
T d1p22a2          80 WDVNTGE-------MLNTLIHHCEAV--LHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDFD  147 (293)
T ss_dssp             EESSSCC-------EEEEECCCCSCE--EEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEEE
T ss_pred             ccccccc-------cccccccccccc--cccccc-ccceeecccccceeEeeccccccccccccc--cccccccccceec
Confidence            9998754       233333332222  233343 357899999999999999876543332111  5777888887776


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                      +   ..+++++.|+.+++||.++. +.+..+.++...+..+.++  +.++++++.||.|++||+++...+.......   
T Consensus       148 ~---~~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  218 (293)
T d1p22a2         148 D---KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE---  218 (293)
T ss_dssp             T---TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS---
T ss_pred             c---cccccccCCCceeeecCCCC-cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccc---
Confidence            4   56788999999999999987 7888888898888888775  5689999999999999999988887764432   


Q ss_pred             CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc---------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522          296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  366 (388)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  366 (388)
                        ..+..  +++++.+|++|+.||.|++||+...         ..+..+    .+|.+.|++++|+  +.+|++|+.||+
T Consensus       219 --~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~H~~~V~~v~~d--~~~l~s~s~Dg~  288 (293)
T d1p22a2         219 --ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQFD--EFQIVSSSHDDT  288 (293)
T ss_dssp             --SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEEC--SSCEEECCSSSE
T ss_pred             --eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe----cCCCCCEEEEEEc--CCEEEEEecCCE
Confidence              23544  5677889999999999999997542         345555    6899999999995  668999999999


Q ss_pred             EEEec
Q 016522          367 LKVSL  371 (388)
Q Consensus       367 v~iw~  371 (388)
                      |+||+
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-38  Score=260.47  Aligned_cols=272  Identities=13%  Similarity=0.161  Sum_probs=213.6

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      .+++++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|...|.++++++++ .+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            467899999999999999987    899999999999998654     35788899999998765 57889999999999


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG  216 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (388)
                      ++....              ....+.++.+.+++  .++..+.++.+.+|+..++.....+.      ....+.  ++++
T Consensus        73 ~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~  128 (287)
T d1pgua2          73 GITKHE--------------FGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVR------LNSPGS--AVSL  128 (287)
T ss_dssp             TEEEEE--------------CSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEEEEEE------CSSCEE--EEEE
T ss_pred             cccccc--------------cccceeeeeeccCC--ceEEEeecccceeeeccceeeeeecc------ccceee--eeec
Confidence            875411              23446677888764  45555667789999999998887762      223344  4455


Q ss_pred             CCCcEEEEeeCC-CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522          217 SNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN  295 (388)
Q Consensus       217 ~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  295 (388)
                       ++..+++++.+ +.+++|++............|...+++++|+|++.+|++|+.||.|++||+.++.......    ..
T Consensus       129 -~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~  203 (287)
T d1pgua2         129 -SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW----AF  203 (287)
T ss_dssp             -CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----CC
T ss_pred             -cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc----cc
Confidence             44566666665 5799999876533333334577889999999999999999999999999999887654432    23


Q ss_pred             CCCCeEEEEecCC----------CCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522          296 EIPHVTSIAFSIS----------GRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  364 (388)
Q Consensus       296 ~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  364 (388)
                      +...|.+++|+|.          +.++++|+.|+.|++||+.+ .+.+..+    .+|...|++++|+|++ .|++++.|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~----~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe----CCCCCCeEEEEECCCC-EEEEEECC
Confidence            4456999999874          46899999999999999876 4555555    7899999999999986 58999999


Q ss_pred             CeEEEecc
Q 016522          365 TNLKVSLH  372 (388)
Q Consensus       365 g~v~iw~~  372 (388)
                      |.|++|+.
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-36  Score=264.45  Aligned_cols=268  Identities=19%  Similarity=0.308  Sum_probs=222.3

Q ss_pred             CCCCcccCCCCceeeeccc------------------cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee
Q 016522           46 GRAPVSFGPTDLVCCRTLQ------------------GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL  107 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~------------------~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~  107 (388)
                      +..+..|+..+.+.+..+.                  +|...|++++|+|++++|++|+.||.|++||...++.......
T Consensus        82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~  161 (388)
T d1erja_          82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG  161 (388)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccc
Confidence            5667788887777666554                  4667799999999999999999999999999999999999999


Q ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522          108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD  187 (388)
Q Consensus       108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d  187 (388)
                      |...|.+++|++++..+++++.++.+++||.....       ...... +.....++.+.+..+.+|++++.||.|++||
T Consensus       162 h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~  233 (388)
T d1erja_         162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  233 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccccceeeeeeeccccc-------cccccc-cccccccccccCCCCCeEEEEcCCCeEEEee
Confidence            99999999999999999999999999999998743       333333 3445566677776568899999999999999


Q ss_pred             cCCCceEEEeecc--cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-----------cceEEEecccCCee
Q 016522          188 ITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------RAVRTFHGHEGDVN  254 (388)
Q Consensus       188 ~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~  254 (388)
                      ..++.....+...  ....|...|.+++|+| ++.+|++++.||.|++||++...           ........|...|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  312 (388)
T d1erja_         234 SETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL  312 (388)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred             cccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEE
Confidence            9998877766332  2246788999999999 88999999999999999987642           23445567889999


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE------ecCCCCEEEEEecCCcEEEEEcc
Q 016522          255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA------FSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      +++|+|++++|++|+.||.|++||+++++++..+..+     ...|.+++      |+|++++|++|+.||.|+||+++
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H-----~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-----RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC-----CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999999999998887553     33588886      46789999999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-37  Score=263.18  Aligned_cols=304  Identities=15%  Similarity=0.159  Sum_probs=224.3

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE---eeeCCccEEEEEECCC-CCEEEEeeCCCc
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPT-GQSVACGGLDSV  132 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  132 (388)
                      ++.+..+++|++.|++|+|+|++++||+|+.||+|+|||+.++.....   ...|..+|.+++|+|+ +.+|++|+.||.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            467889999999999999999999999999999999999977654333   3368899999999986 468999999999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEecccccce-EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc-ccCCccCeE
Q 016522          133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYV-SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVL  210 (388)
Q Consensus       133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~i~  210 (388)
                      |++|++....       .......+.... ....+.++ ...+++++.++.+++||++.+.......... .........
T Consensus        81 v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          81 ILKVDLIGSP-------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EEEECSSSSS-------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             eeeeeccccc-------ccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceee
Confidence            9999998754       233333343333 34444444 5789999999999999987654333221111 012223344


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcce--EEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  287 (388)
                      ...+.+ ....+++++.||.|++||++......  .....+...+.+..+.+ ++..+++++.||.+.+|+.........
T Consensus       153 ~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         153 IFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            555665 67889999999999999998763322  22333445566666655 778999999999999999865432211


Q ss_pred             ------ee----eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe
Q 016522          288 ------YY----QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  357 (388)
Q Consensus       288 ------~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  357 (388)
                            ..    ......+...+++++|+|++++|++|+.||.|++||+.+++.+..+.   ..  ..+..++|+|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~---~~--~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KF--NEDSVVKIACSDNI  306 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---CC--SSSEEEEEEECSSE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec---CC--CCCEEEEEEeCCCE
Confidence                  11    11123445568999999999999999999999999999999988773   22  34556778888999


Q ss_pred             EEEccCCCeEEEeccce
Q 016522          358 LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       358 l~s~~~dg~v~iw~~~~  374 (388)
                      |++|+.|+.+++|....
T Consensus       307 l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         307 LCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EEEEEECTHHHHCSSSC
T ss_pred             EEEEEcCCcEEEeeeeC
Confidence            99999999999998654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-37  Score=259.33  Aligned_cols=256  Identities=14%  Similarity=0.221  Sum_probs=208.6

Q ss_pred             eeeecccccc-CCeeEEEeCC--CCCeEEEEeCCCcEEEEECCCCCeee--------EeeeCCccEEEEEECCCCCEEEE
Q 016522           58 VCCRTLQGHA-GKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTH--------AIKLPCAWVMTCAFSPTGQSVAC  126 (388)
Q Consensus        58 ~~~~~l~~h~-~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~  126 (388)
                      .....+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..++...        .+..+..+|.+++|+++++++++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            4456677875 6899999998  56799999999999999986654332        23457788999999999999987


Q ss_pred             eeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522          127 GGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG  204 (388)
Q Consensus       127 ~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  204 (388)
                      ++.  ++.+.+|+.+++.       ....+.+|...|.+++|+|+++.++++++.|+.|++||....+.......  ...
T Consensus       133 ~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~--~~~  203 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN-------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT--HHK  203 (325)
T ss_dssp             EECCSSCSEEEEETTTCC-------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS--SSC
T ss_pred             eeccccceEEEEeecccc-------cceeeeecccccccccccccccceEEEeecccccccccccccccceeccc--ccC
Confidence            764  6789999998754       67778899999999999999877788999999999999988776665532  256


Q ss_pred             CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc---cCCCEEEEeeCCCcEEEEECCC
Q 016522          205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF---PDGNRFGTGSDDGTCRLFDIRT  281 (388)
Q Consensus       205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~  281 (388)
                      |...|.+++|+|+.+.++++++.||.|++||+++. +.+..+.+|..++.++.|+   |++++|++++.|+.|+|||+++
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccc-cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            78889999999977899999999999999999987 7888888898888776666   6899999999999999999999


Q ss_pred             CceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEc
Q 016522          282 GHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  326 (388)
                      ++.+..+......   ..+..+++.+. +.+|++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQ---LGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTC---GGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCc---ccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9988877653322   12333333332 347899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-36  Score=255.20  Aligned_cols=303  Identities=18%  Similarity=0.339  Sum_probs=242.7

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhcccc---Cc-----------------------ccccccCCCCC
Q 016522            1 MSSSVSELKERHAAAIETVNSLRERLKQ-----KRQQLLDV---DV-----------------------AGYSRSQGRAP   49 (388)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~-----------------------~~~~~~~~~~~   49 (388)
                      |++ +++++++...+++++.+.++....     ....+...   ++                       ...+.+.++.+
T Consensus         1 ~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v   79 (340)
T d1tbga_           1 MSE-LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL   79 (340)
T ss_dssp             CTT-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ChH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcccccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCce
Confidence            444 888888888888888776643222     11111110   00                       01334566778


Q ss_pred             cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC----eeeEeeeCCccEEEEEECCCCCEEE
Q 016522           50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSPTGQSVA  125 (388)
Q Consensus        50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~  125 (388)
                      ..|+....+.+..+.+|.++|.+++|+|+++++++|+.|+.+++|+.....    ....+..|......... ..+..+.
T Consensus        80 ~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (340)
T d1tbga_          80 IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIV  158 (340)
T ss_dssp             EEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEE-EETTEEE
T ss_pred             eeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccc-ccccccc
Confidence            889999999999999999999999999999999999999999999976543    34445556665544444 4556677


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH  205 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  205 (388)
                      ....+.....+......       .......+...+....+.+.+ .++++++.|+.|++||+++++....+     ..|
T Consensus       159 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~-----~~h  225 (340)
T d1tbga_         159 TSSGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF-----TGH  225 (340)
T ss_dssp             EEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEE-----CCC
T ss_pred             ccccccccccccccccc-------ccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEE-----eCC
Confidence            78888889898887643       455566677888888888875 78999999999999999999999888     789


Q ss_pred             ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ...|++++|+| ++++|++|+.||.|++||++.. .....+  ..+...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus       226 ~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         226 ESDINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCeEEEEeeccc-ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence            99999999999 8899999999999999999877 444443  3566789999999999999999999999999999999


Q ss_pred             eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      .+..+..     |..+|++++|+|++++|++|+.||.|++||
T Consensus       304 ~~~~~~~-----H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 RAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcC-----CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            8888754     344699999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=256.12  Aligned_cols=294  Identities=16%  Similarity=0.195  Sum_probs=209.6

Q ss_pred             eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe------eeEeeeCCccEEEE------EECC-CCCEEE
Q 016522           59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTC------AFSP-TGQSVA  125 (388)
Q Consensus        59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~------~~~~-~~~~l~  125 (388)
                      .....++|.+.|.++++++  ++|+|++.|++|+|||..+.+.      ......+...+..+      ..+. ++.+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4567789999999999875  5999999999999999765442      22222333332222      2222 335678


Q ss_pred             EeeCCCcEEEEeCCCCCCCCCCCcee---EEecccccceEEEEEEeCC----CceEEEeeCCCeEEEEecCCCc------
Q 016522          126 CGGLDSVCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGL------  192 (388)
Q Consensus       126 ~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~------  192 (388)
                      +++.||.|++|++.............   .....+...+..++|.++.    ..++++++.||.+++||+....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            89999999999987644211110000   0112345567778887754    2578999999999999975321      


Q ss_pred             -------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE------EEecccCCeeEEEEc
Q 016522          193 -------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR------TFHGHEGDVNTVKFF  259 (388)
Q Consensus       193 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~i~~~~~~  259 (388)
                             ............+...+.+++|+| ++ +|++|+.||.|++||+.+. +++.      .+.+|..+|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEcccc
Confidence                   001111112245566789999998 54 8899999999999999877 4433      345689999999999


Q ss_pred             cCCCEEEEeeCCCc---EEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522          260 PDGNRFGTGSDDGT---CRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  328 (388)
Q Consensus       260 ~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (388)
                      |++++|++|+.|+.   |++||+.+++.+..+....        ...|...|++++|+|++++|++|+.|++|++||+.+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99999999999874   9999999998887764321        124667899999999999999999999999999999


Q ss_pred             ceEEeeccCCCCCcCCCee----EEEECCCCCeEEEc
Q 016522          329 AKVVLNLGSLQNSHEGRIT----CLGLSADGSALCTG  361 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s~  361 (388)
                      ++.+..+    .+|.+.|.    .++|++++..++++
T Consensus       321 g~~~~~l----~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         321 KERITTL----NMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TEEEEEE----ECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCEEEEE----CCcCCcccCCccEEEECCCCCEEEEc
Confidence            9999998    67776654    35566666554443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-35  Score=245.83  Aligned_cols=253  Identities=14%  Similarity=0.143  Sum_probs=202.0

Q ss_pred             CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEe
Q 016522           99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITS  177 (388)
Q Consensus        99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~  177 (388)
                      |+..+.+.+|...|++++|+|++++|++|+.||.|++||+.++.       ....+ ..|...|++++|+|++ . ++++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------~~~~~~~~h~~~v~~v~~~~~g-~-~~~~   72 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-------SNRVFPDVHATMITGIKTTSKG-D-LFTV   72 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEECSSCSCSSCEEEEEECTTS-C-EEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCCcEEEEEeeccc-e-eecc
Confidence            45678889999999999999999999999999999999998754       33444 4789999999999986 3 6778


Q ss_pred             eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEE
Q 016522          178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  257 (388)
Q Consensus       178 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~  257 (388)
                      +.|+.+++|+..........  .....+...+.+++++| ++.++++++ ++.+.+|+...   .....  ....+.+++
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~---~~~~~--~~~~~~~~~  143 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSK--AVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK---LTEVP--ISYNSSCVA  143 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTS--CCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE---EEEEE--CSSCEEEEE
T ss_pred             cceeeEEEeccCCccccccc--ccccccccccccccccc-ccccccccc-ccccccccccc---ccccc--ccccccccc
Confidence            88999999998654321110  01134667889999998 666666554 67899999542   22222  345678999


Q ss_pred             EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522          258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      |+|++++|++|+.||.|++||+++++........    +...|++++|+|++++|++++.|+.|++||+.++........
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV----HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999887655433322    234699999999999999999999999999988877655433


Q ss_pred             CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      . ..|...|++++|+|++++|++|+.||.|++|+...
T Consensus       220 ~-~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         220 W-TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             C-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             c-cccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            2 57899999999999999999999999999998653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-32  Score=230.17  Aligned_cols=265  Identities=28%  Similarity=0.428  Sum_probs=210.0

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE------
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT------  114 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~------  114 (388)
                      .+.+.+..+..|+..+.++++++.+|.+.|.+++|+|+  +|++|+.|+.+++|+............+...+..      
T Consensus        31 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d2ovrb2          31 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK  108 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccc
Confidence            45667888999999999999999999999999999875  9999999999999998765544333322221111      


Q ss_pred             --------------------------------EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceE
Q 016522          115 --------------------------------CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS  162 (388)
Q Consensus       115 --------------------------------~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~  162 (388)
                                                      ..+.+....+++++.|+.|++|+.....       ....+.+|...+.
T Consensus       109 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~  181 (342)
T d2ovrb2         109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVY  181 (342)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-------EEEEECCCSSCEE
T ss_pred             cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccce-------eeEEEcCcccccc
Confidence                                            1222344567778888888888877643       5566777777666


Q ss_pred             EEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc
Q 016522          163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA  242 (388)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  242 (388)
                      .+.+  ++ .++++++.||.|++||++.++.+..+     ..|...+.++.+++   ++|++++.||.|++||+... +.
T Consensus       182 ~~~~--~~-~~l~s~~~dg~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~-~~  249 (342)
T d2ovrb2         182 SLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG-QC  249 (342)
T ss_dssp             EEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC-CE
T ss_pred             cccC--CC-CEEEEEeCCCeEEEeecccceeeeEe-----cccccceeEEecCC---CEEEEEcCCCEEEEEecccc-cc
Confidence            5544  44 67999999999999999999998888     78889999988865   58999999999999999877 55


Q ss_pred             eEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522          243 VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  319 (388)
Q Consensus       243 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (388)
                      ...+..   |...+.++.+  +++++++++.||.|++||+++++.+..+.......+...|++++|+|++.++++|+.||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            555554   4556666666  46799999999999999999999988887655555667799999999999999999998


Q ss_pred             c----EEEEEccc
Q 016522          320 D----CYVWDTLL  328 (388)
Q Consensus       320 ~----i~i~d~~~  328 (388)
                      +    |++||+..
T Consensus       328 t~~~~l~~~Df~~  340 (342)
T d2ovrb2         328 TEETKLLVLDFDV  340 (342)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCeeEEEEEeCCC
Confidence            5    99999753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-31  Score=230.87  Aligned_cols=268  Identities=18%  Similarity=0.173  Sum_probs=192.6

Q ss_pred             eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE---EeC---CCceEEE
Q 016522          103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY---VPD---EDTHLIT  176 (388)
Q Consensus       103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~---~~~~l~~  176 (388)
                      ...++|...|.++++++  +++++++.|+.|++||........ ..........|...+..+..   .+.   ...++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc-ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34468999999999864  699999999999999987644211 11122223334443332222   121   1246789


Q ss_pred             eeCCCeEEEEecCCCceEE-----EeecccccCCccCeEEEEeeCCC----CcEEEEeeCCCceEEEECCCCCc------
Q 016522          177 SSGDQTCVLWDITTGLRTS-----VFGGEFQSGHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASR------  241 (388)
Q Consensus       177 ~~~dg~v~i~d~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~------  241 (388)
                      ++.||.|++|++.......     .........+...+..+++.+..    ..++++++.||.+++|++.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999976543211     11111112345667778887632    47899999999999999853311      


Q ss_pred             ----c-------eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc-CCCCCCCeEEEEecCCC
Q 016522          242 ----A-------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISG  309 (388)
Q Consensus       242 ----~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~  309 (388)
                          .       ......+...+.+++|+|++ +|++|+.||.|++||+.+++++..+.... ...|..+|.+++|+|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                0       11112344568899999987 89999999999999999998877665432 23466789999999999


Q ss_pred             CEEEEEecCCc---EEEEEcccceEEeeccC---------CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          310 RLLFAGYSNGD---CYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       310 ~~l~~~~~dg~---i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++|++|+.|++   |++||+.+++.+..+..         ...+|.+.|++++|+|++++|++|+.|++|+||+...
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99999999874   89999999888777631         1247999999999999999999999999999999754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-30  Score=222.78  Aligned_cols=245  Identities=23%  Similarity=0.304  Sum_probs=196.9

Q ss_pred             eeEeeeCCccE-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          102 THAIKLPCAWV-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       102 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      ..++++|...| +|++|  ++++|++|+.||.|+|||+.+++       ....+.+|.+.|.+++|+|+  .+|++|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG--GILVSGSTD   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT--TEEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC--CEEEEEecc
Confidence            45688998875 55555  68899999999999999998755       67889999999999999985  479999999


Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc------------------
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------------------  242 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------  242 (388)
                      |.|++|+............   ..+........+.+ ++.++++++.|+.|++||++.....                  
T Consensus        74 ~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEG---HNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             CCEEEEETTTTEEEEEECC---CSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             ccccccccccccccccccc---cccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            9999999999887766632   23333445555666 7889999999999999998765211                  


Q ss_pred             ----eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522          243 ----VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  318 (388)
Q Consensus       243 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (388)
                          ......|...+  ..+.+++++++++..|+.|++||+++++.+.......     ..+.++.|+|++.++++++.|
T Consensus       150 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d  222 (355)
T d1nexb2         150 NPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-----DRIYSTIYDHERKRCISASMD  222 (355)
T ss_dssp             CTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-----SCEEEEEEETTTTEEEEEETT
T ss_pred             ccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccc-----cccccccccccceeeeccccc
Confidence                11122233333  3455678999999999999999999988877664433     348999999999999999999


Q ss_pred             CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      +.|++||..++..+..+    .+|...|.+++|++  ++|++|+.||.|++|+...
T Consensus       223 ~~i~i~d~~~~~~~~~~----~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         223 TTIRIWDLENGELMYTL----QGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             SCEEEEETTTCCEEEEE----CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTT
T ss_pred             ceEEeeecccccccccc----cccccccccccccc--ceeeeeecccccccccccc
Confidence            99999999999999988    78999999999974  6999999999999998754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-31  Score=225.90  Aligned_cols=268  Identities=10%  Similarity=0.058  Sum_probs=196.6

Q ss_pred             CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522          100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +.+...+.|...|++++|+|++++|++|+.||+|+|||++....    ........+|.++|.+++|+|+++.++++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----ceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            34556678999999999999999999999999999999976431    11233344799999999999987778999999


Q ss_pred             CCeEEEEecCCCceEEEeecccccCCccCe-EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cc--cCCe
Q 016522          180 DQTCVLWDITTGLRTSVFGGEFQSGHTADV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GH--EGDV  253 (388)
Q Consensus       180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~--~~~i  253 (388)
                      ||.|++|++.........     ..+.... ....+.+ +...+++++.++.+++||++..........   .+  ....
T Consensus        78 d~~v~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQAL-----TNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             TSCEEEECSSSSSSEEEC-----BSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             ccceeeeecccccccccc-----ccccccccccccccc-ccccccccccccccceeeccccccceeeeccccccccccee
Confidence            999999999988777766     2333333 3444444 778999999999999999876532222221   11  2234


Q ss_pred             eEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe-cCCCCEEEEEecCCcEEEEEcccceEE
Q 016522          254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVV  332 (388)
Q Consensus       254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (388)
                      ....+.+.+..+++++.|+.|++||++..............  ...+.+..+ ..++..+++++.||.+.+|+.......
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc--ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            56677888999999999999999999887655444332221  223444444 456779999999999999987543221


Q ss_pred             e---------ec--cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522          333 L---------NL--GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLM  379 (388)
Q Consensus       333 ~---------~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~  379 (388)
                      .         ..  ......|...|++++|+|++++|++|+.||.|+||+......+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            1         11  11124577789999999999999999999999999976544333

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.9e-31  Score=228.55  Aligned_cols=276  Identities=14%  Similarity=0.051  Sum_probs=211.1

Q ss_pred             eEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCCCCCC
Q 016522           71 YSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGN  147 (388)
Q Consensus        71 ~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~  147 (388)
                      .+-.||| ||+++|+++ +|.|++||...+.....  .|...|.+++|+|||++|++++.+.  .|++||.+++.     
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----
Confidence            3467999 999999887 57999999988776553  5888899999999999998876553  79999998754     


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe--
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG--  225 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--  225 (388)
                         ...+..|...|.+++|+|++ +++++++.++.+.+|+..+++....+     ..+...+.+++|+| ++++|+.+  
T Consensus        78 ---~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~sp-dg~~la~~~~  147 (360)
T d1k32a3          78 ---AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIE-----RSREAMITDFTISD-NSRFIAYGFP  147 (360)
T ss_dssp             ---EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCCEEECT-TSCEEEEEEE
T ss_pred             ---EEEeeCCCceEEeeeecccc-cccceeccccccccccccccceeeee-----ecccccccchhhcc-ceeeeeeecc
Confidence               45677899999999999997 68999999999999999999988877     67888899999999 77777754  


Q ss_pred             --------eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-------eEeee
Q 016522          226 --------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-------QVYYQ  290 (388)
Q Consensus       226 --------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~  290 (388)
                              ..++.+++||+...  .......+...+..++|+|+|++|++++.++.+.+|+.......       .....
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~  225 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL  225 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred             ccccceeeccccceeeeccccC--ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEec
Confidence                    33456899999865  34455567778899999999999999999999999987543221       11100


Q ss_pred             ccCC-------------------------------CCCCCeEEEEecCCCC-------------EEEEEecCCcEEEEEc
Q 016522          291 QHGE-------------------------------NEIPHVTSIAFSISGR-------------LLFAGYSNGDCYVWDT  326 (388)
Q Consensus       291 ~~~~-------------------------------~~~~~i~~~~~~~~~~-------------~l~~~~~dg~i~i~d~  326 (388)
                      ....                               ........+...+++.             +++.++.++.+++||+
T Consensus       226 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  305 (360)
T d1k32a3         226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV  305 (360)
T ss_dssp             STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred             ccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence            0000                               0011122333333222             3445566789999999


Q ss_pred             ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .+++..        .|.+.|.+++|+|||++|++++.||.|++|....
T Consensus       306 ~~~~~~--------~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         306 KTRKVT--------EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             TTCCEE--------EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             CCCeEE--------EecCCcCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            887643        3456799999999999999999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-29  Score=209.42  Aligned_cols=257  Identities=24%  Similarity=0.446  Sum_probs=209.7

Q ss_pred             cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ..+++.+..+..|+..+.+++++|++|.+.|++++|  ++++|++|+.||.|++|++..+.............  ..+.+
T Consensus        28 l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~  103 (293)
T d1p22a2          28 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRF  103 (293)
T ss_dssp             EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEEC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--ccccc
Confidence            456678899999999999999999999999999987  56799999999999999999988877766555433  33455


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG  199 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  199 (388)
                      ....++++..++.+.+|+.....    .......+..|...+..+.+.+   ..+++++.|+.|++||+++++.+..+  
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~--  174 (293)
T d1p22a2         104 NNGMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL--  174 (293)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             cccceeecccccceeEeeccccc----cccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE--
Confidence            67789999999999999998744    2234556678888888877765   46889999999999999999988888  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  279 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  279 (388)
                         ..+...+..+.+++   ..+++++.||.|++||+++. ..+....+|...+..  +++++.+|++++.||.|++||+
T Consensus       175 ---~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         175 ---NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             ---ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEH
T ss_pred             ---cccccccccccCCC---CeEEEecCCCEEEEEecccc-eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEEC
Confidence               67778888887764   58999999999999999987 778888888888765  4557889999999999999997


Q ss_pred             CCCc---------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          280 RTGH---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       280 ~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      ....         .+..+     ..|...|++++|+  +++|++|+.||+|++||
T Consensus       246 ~~~~~~~~~~~~~~~~~~-----~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         246 VAALDPRAPAGTLCLRTL-----VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCccccccCCceeeEEe-----cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            5432         23333     2344568999884  56899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-29  Score=205.59  Aligned_cols=252  Identities=13%  Similarity=0.109  Sum_probs=191.4

Q ss_pred             cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522           40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP  119 (388)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  119 (388)
                      ..+++.+..+..|+....     ..+|...|.++++++++ .+++++.|+++++|++...       .....+..+++++
T Consensus        24 l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~   90 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANN   90 (287)
T ss_dssp             TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeecc
Confidence            456677888999987653     36899999999999765 6899999999999986432       2234577888999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEee
Q 016522          120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~  198 (388)
                      ++..++++. ++.+.+|+...+.       ....+..+ ..  ..++++++. .+++++.+ +.|++|++........+.
T Consensus        91 ~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~-~~--~~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2          91 DGFTAVLTN-DDDLLILQSFTGD-------IIKSVRLN-SP--GSAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             SSEEEEEET-TSEEEEEETTTCC-------EEEEEECS-SC--EEEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             CCceEEEee-cccceeeecccee-------eeeecccc-ce--eeeeeccCc-ceeeeccccceeeeeeccccceeeeee
Confidence            888777665 5567888887644       33333322 23  345667664 56666555 579999987665554442


Q ss_pred             cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC----------CCEEEEe
Q 016522          199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTG  268 (388)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~  268 (388)
                          ..+...+++++|+| ++.+|++|+.||.|++||+.+.......+.+|..+|.+++|+|.          +.+|++|
T Consensus       159 ----~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         159 ----TPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             ----SCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             ----eccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence                46778899999999 88999999999999999998774444556789999999999874          4689999


Q ss_pred             eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522          269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (388)
                      +.|+.|++||++++.......    ..|...|++++|+|++ .|++++.||.|++|++
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~----~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEe----CCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999999998754433322    2345579999999986 5888999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.2e-28  Score=209.36  Aligned_cols=263  Identities=8%  Similarity=0.040  Sum_probs=199.3

Q ss_pred             CCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522           46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS  123 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  123 (388)
                      ......|+.......+.  +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+..|...+.+++|+|+|++
T Consensus        23 ~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~   99 (360)
T d1k32a3          23 RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKF   99 (360)
T ss_dssp             TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSE
T ss_pred             CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccc
Confidence            34566777776666553  6999999999999999998877654  7999999877654 56678888999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEE----------eeCCCeEEEEecCCCce
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT----------SSGDQTCVLWDITTGLR  193 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~v~i~d~~~~~~  193 (388)
                      |++++.++.+++|+..+..       ....+..|...+.+++|+|+|. +|+.          +..++.+++||+.+++.
T Consensus       100 l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         100 AVVANDRFEIMTVDLETGK-------PTVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             EEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             cceeccccccccccccccc-------eeeeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccCce
Confidence            9999999999999998755       5677788889999999999984 5553          34556799999998866


Q ss_pred             EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc------ceEEEecc------------------
Q 016522          194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGH------------------  249 (388)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~------------------  249 (388)
                      ...      ..+...+..+.|+| +++.|++++.++.+.+||......      .......|                  
T Consensus       172 ~~~------~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  244 (360)
T d1k32a3         172 FAA------TTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA  244 (360)
T ss_dssp             EEC------SCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred             eee------cccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccc
Confidence            554      46677888999999 889999999999999998653210      00011000                  


Q ss_pred             ------------------cCCeeEEEEccCC-------------CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522          250 ------------------EGDVNTVKFFPDG-------------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  298 (388)
Q Consensus       250 ------------------~~~i~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  298 (388)
                                        .+....+...+++             .++++++.++.|++||+.+++.....         .
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------~  315 (360)
T d1k32a3         245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---------N  315 (360)
T ss_dssp             CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---------E
T ss_pred             cceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---------C
Confidence                              1112223332222             23455667889999999887653322         1


Q ss_pred             CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      .+.+++|+|||++|++++.||.|++||+.+++...++
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            3899999999999999999999999999988777666

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.97  E-value=2.4e-26  Score=191.54  Aligned_cols=265  Identities=15%  Similarity=0.172  Sum_probs=208.6

Q ss_pred             EEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522           82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      +++++.|++|.+||+.+++.+.+++.... +..++|+|+|++|+ +++.++.|++||+.++.       ....+..+. .
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~-p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-------~~~~~~~~~-~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS-S   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS-S
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-------eeeeeeccc-c
Confidence            35677899999999999999998886644 78999999999875 56678999999998755       455566554 4


Q ss_pred             eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC
Q 016522          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  240 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  240 (388)
                      +..+.|++++...++++..++.+.+|+..+++....+      .+.....++.++|++..+++++..++.+.+|+..+. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-  148 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-  148 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred             ccccccccccccccccccccceeeecccccceeeeec------cccccceEEEeecCCCeeeeeeccccceeeeecccc-
Confidence            5789999998777788888999999999999888776      344567889999955556667777889999999877 


Q ss_pred             cceEEEecccCCeeEEEEccCCCEEEEeeCC-CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec--
Q 016522          241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--  317 (388)
Q Consensus       241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  317 (388)
                      .....+.. ...+..+.++|++..+++++.+ +.+.+|+..............      .+..++|+++++.++++..  
T Consensus       149 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         149 AVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS
T ss_pred             ceeeeccc-CCCceEEEeeccccceeeecccccccccccccceeeeecccccC------Ccceeeccccccccccccccc
Confidence            55555554 4557889999999988887765 567778777666555543321      3678999999998876654  


Q ss_pred             -CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEeccce
Q 016522          318 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSLHYY  374 (388)
Q Consensus       318 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~  374 (388)
                       ++.|++||+.+++.+..+.     +...+.+++|+|||++| ++++.|+.|++|+...
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~-----~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIP-----VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEE-----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eeeeeeeeecCCCeEEEEEc-----CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence             3579999999999888762     34568999999999977 5777899999998754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=7.3e-28  Score=210.88  Aligned_cols=316  Identities=9%  Similarity=0.007  Sum_probs=211.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-----eCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-----LPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~  115 (388)
                      .....+..+..|+..+.+.+.++..|. .+..++|+|||++|++++.||+|++||+.+++......     .|...+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            445667889999999999999999885 59999999999999999999999999999987554332     344556777


Q ss_pred             EECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----------CeE
Q 016522          116 AFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----------QTC  183 (388)
Q Consensus       116 ~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~v  183 (388)
                      +|+|||++++++ ..++.+.+||.....       .......|...+....+.+++....+.++.|           +.+
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccc-------eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            888999987655 578999999998855       4555555554444444444433333334444           444


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccC
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPD  261 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~  261 (388)
                      .+++...........    ..+...+..+.++|.+..++++...+..+.+++.... ..+.....  +........+.+.
T Consensus       188 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         188 LLVNYKDIDNLTVTS----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             EEEECSSSSSCEEEE----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT-EEEEEEECSSCCCCSCCEEEEET
T ss_pred             EEEEeccccceeeEE----eccCCccEeeeECCCCcEEEeeeecccceeeeecccc-cEEEEeccCCcccccceeeeecC
Confidence            444444332211110    3566778899999955555555566778999998876 44444432  1222233333333


Q ss_pred             CCE---EEEeeCCCcEEEEECCCC-------ceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-------EecCCcEEEE
Q 016522          262 GNR---FGTGSDDGTCRLFDIRTG-------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-------GYSNGDCYVW  324 (388)
Q Consensus       262 ~~~---l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~  324 (388)
                      +..   .+..+.|+.+.+|+....       +....+..     +...+..++|+|++++|++       +..+++|++|
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g-----~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-----QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC-----SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             CCCceEEeccCCCceEEEeeccccccccccceEeEEEec-----CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEE
Confidence            221   223345677777775443       44444433     3345899999999999995       4567899999


Q ss_pred             EcccceEEeeccC-----CCCCcCCCeeEEEECCCCCeEEE-----ccCCCeEEEeccce
Q 016522          325 DTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCT-----GSWDTNLKVSLHYY  374 (388)
Q Consensus       325 d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s-----~~~dg~v~iw~~~~  374 (388)
                      |+.+++...++..     ....|...|..++|+|||++++.     ++.||.|+||+..-
T Consensus       338 d~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         338 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             ECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            9988765544311     01346677999999999997743     34689999998654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.5e-28  Score=213.43  Aligned_cols=312  Identities=12%  Similarity=0.040  Sum_probs=208.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee--eEee---eCCccEEEE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIK---LPCAWVMTC  115 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~---~~~~~v~~~  115 (388)
                      ...+.+..+..|++...+++.++..|. .+..++|+|||+++++++.||+|++||+.+++..  ..++   .|.+.+.+.
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            455567788899999999999999885 6999999999999999999999999999887643  3333   344456666


Q ss_pred             EECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-----------cccceEEEEEEeCCCceEEEeeCCCeE
Q 016522          116 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----------HKGYVSCCQYVPDEDTHLITSSGDQTC  183 (388)
Q Consensus       116 ~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~v  183 (388)
                      +|+|||++| ++++.++.|++||..+++       ....+..           +......+.++|++..++++...++.|
T Consensus       115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             STTCTTTEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ccCCCCCEEEEEcCCCCeEEEEeCcccc-------ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            788999986 667789999999998865       3333322           344566788999987777888889999


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEec-----ccCCeeEEE
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK  257 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~  257 (388)
                      .+||..+.+......    ..+...+..++++| +++++ +++..++.+.++|.... +.+..+..     |........
T Consensus       188 ~~~d~~~~~~~~~~~----i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         188 LLVDYTDLNNLKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             EEEETTCSSEEEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEE
T ss_pred             EEEEccCCCcceEEE----EcccCccccceECC-CCCEEEEeccccceEEEeecccc-eEEEEeccCccccccCccccee
Confidence            999998876554331    23456788999999 55554 44555668888998765 33333221     222223333


Q ss_pred             EccCCCEEEEee-CCCcEEEEECCCCc-------eeeEeeeccCC--------------------CCCCCeEEEEecCCC
Q 016522          258 FFPDGNRFGTGS-DDGTCRLFDIRTGH-------QLQVYYQQHGE--------------------NEIPHVTSIAFSISG  309 (388)
Q Consensus       258 ~~~~~~~l~~~~-~dg~i~i~d~~~~~-------~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~  309 (388)
                      +...+...++.. .++.+.+|+.....       ...........                    .+......+++ ||+
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg  340 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDI  340 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEG
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eec
Confidence            333333333322 25556666543321       11111110000                    00001223443 788


Q ss_pred             CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-----CCCeEEEeccce
Q 016522          310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVSLHYY  374 (388)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~  374 (388)
                      +.+++++.|+.+++||+.++.   .+    ..|...|.+++|+|||++++.+.     .+|.|.||+..-
T Consensus       341 ~~la~~s~d~~~k~w~~~~~~---~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         341 KAMTGDGSDPEFKTLPIAEWA---GI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             GGCCCSSSCCCEEEECHHHHH---TC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             hhhcccccCCceEeccccccc---cc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence            888889899999999876653   22    35667899999999999885543     578999998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=6.5e-25  Score=182.75  Aligned_cols=268  Identities=14%  Similarity=0.117  Sum_probs=208.4

Q ss_pred             cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522           44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ  122 (388)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (388)
                      ..+..+..|++.+.+.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+.. +..++|++++.
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~   86 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGK   86 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSS
T ss_pred             CCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccc
Confidence            44566788999999999988754 457899999999987 5667889999999999999998887765 78999999998


Q ss_pred             EEEE-eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522          123 SVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF  201 (388)
Q Consensus       123 ~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  201 (388)
                      .+++ +..++.+.+|+..++.       ....+.. .....++.++|++..+++++..++.+.+|+..+......+    
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~----  154 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTSNT-------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV----  154 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred             cccccccccceeeecccccce-------eeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec----
Confidence            6655 5567789999998754       3444443 4566789999998777778888999999999999888876    


Q ss_pred             ccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEE
Q 016522          202 QSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLF  277 (388)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~  277 (388)
                        .+...+..+.++| ++..+++++ .++.+.+|+.... ....... ....+..++|++++..+++++.   ++.|.+|
T Consensus       155 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         155 --SVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             --ECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             --ccCCCceEEEeec-cccceeeecccccccccccccce-eeeeccc-ccCCcceeeccccccccccccccceeeeeeee
Confidence              3345678899999 555555554 4566777776654 4444444 4456788999999998876543   4679999


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE-EEEecCCcEEEEEcccceEEeecc
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~  336 (388)
                      |+.+++....+....      .+..++|+|||++| ++++.++.|.+||+.+++.+.++.
T Consensus       230 D~~t~~~~~~~~~~~------~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         230 DTGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ecCCCeEEEEEcCCC------CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999998877664421      37899999999977 466678999999999999988874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=8.4e-25  Score=191.25  Aligned_cols=283  Identities=11%  Similarity=0.023  Sum_probs=198.8

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY  160 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
                      ++++++.||+|++||+.+++.+.++..+.. +..++|+|||+++++++.|+.+++||+.+++..  .........+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSS-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCC-eeEEEECCCCCEEEEEeCCCCEEEEEccCCcee--EEEEEeCCCCCcce
Confidence            567888999999999999999999998754 899999999999999999999999999885411  00011223356677


Q ss_pred             eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc------cCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ------SGHTADVLSVSISGSNSRMFVSGSCDSTARLW  234 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~  234 (388)
                      +.+++|+|+|..+++++..++.+.+||..++...........      ..+......+..+++...++.+....+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            778888899866667777999999999999988877632110      11223344555555333333334444566666


Q ss_pred             ECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--E
Q 016522          235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--L  311 (388)
Q Consensus       235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~  311 (388)
                      +.............+...+..+.|+|++++++++. .+..+.+++..+++............   ......+...+.  .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  267 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH---PGRGANFVHPKYGPV  267 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC---CSCCEEEEETTTEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc---ccceeeeecCCCCce
Confidence            66555334444556778899999999999887776 55679999999998887765533221   122223322222  2


Q ss_pred             E-EEEecCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEE-------EccCCCeEEEeccc
Q 016522          312 L-FAGYSNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALC-------TGSWDTNLKVSLHY  373 (388)
Q Consensus       312 l-~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-------s~~~dg~v~iw~~~  373 (388)
                      . +..+.|+.+.+|+...       ++....+    .+|...+..++|+||+++|+       +++.|++|+||+..
T Consensus       268 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l----~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         268 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             EEEECTTTCEEEEEECCTTTCTTTBTSEEEEE----ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             EEeccCCCceEEEeeccccccccccceEeEEE----ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence            2 2334567777777543       3566666    68999999999999999999       46678999999964

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.5e-24  Score=189.20  Aligned_cols=244  Identities=11%  Similarity=0.006  Sum_probs=172.5

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      -++++.+.||+|.|||..+++.+..+..+. .+..++|+|||+++++++.||.+.+||+.+.+..  ..........|.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--~~~~i~~~~~~~~  109 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSEARS  109 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce--EEEEEecCCCCCC
Confidence            346899999999999999999999999875 5999999999999999999999999999875411  0011222345666


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc------ccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      .+.+..|+|||..++++++.++.|++||..+++....+....      ...+......+.++|++..++++...++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            677777888986667889999999999999999887764321      12244566778889855566677788899999


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                      ||.............+...+..++|+|+|+++++++. ++.+.++|..+++............+........+...+...
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence            9988763222222235567889999999998877765 557999999888777665543333223333333444333333


Q ss_pred             EEEe-cCCcEEEEEc
Q 016522          313 FAGY-SNGDCYVWDT  326 (388)
Q Consensus       313 ~~~~-~dg~i~i~d~  326 (388)
                      ++.. .++.+.+|+.
T Consensus       270 ~~~~lg~~~v~~~~~  284 (432)
T d1qksa2         270 ATSHMGDDSVALIGT  284 (432)
T ss_dssp             EEEBSSSSEEEEEEC
T ss_pred             cccccCCceEEeccc
Confidence            3332 2455666654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.3e-24  Score=182.25  Aligned_cols=265  Identities=12%  Similarity=0.047  Sum_probs=195.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG  156 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  156 (388)
                      +++++++.|++|.+||+.+++.+..+..+.  ..+.+++|+|||++++ +++.++.|.+||+.+++       .......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-------~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEEEec
Confidence            489999999999999999999999887643  4578999999999875 56779999999999865       3444433


Q ss_pred             c-----ccceEEEEEEeCCCceEEEee------------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          157 H-----KGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       157 ~-----~~~v~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      +     ...+..++|+|++. .++++.            .++.+.+||..++.....+      .....+..++++| ++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~s~-dg  146 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF------EAPRQITMLAWAR-DG  146 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE------ECCSSCCCEEECT-TS
T ss_pred             CCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCCeEEEec------cccCCceEEEEcC-CC
Confidence            3     23456789999975 455443            4678999999999888877      2345678899998 77


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC------------------------CCEEEEeeCCCcEE
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD------------------------GNRFGTGSDDGTCR  275 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~l~~~~~dg~i~  275 (388)
                      .++++++  +.+.+||.... .....+..+... ....+.|+                        ......+..++.+.
T Consensus       147 ~~l~~~~--~~~~~~d~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (337)
T d1pbyb_         147 SKLYGLG--RDLHVMDPEAG-TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SCEEEES--SSEEEEETTTT-EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CEEEEEc--CCcceeeeecC-cEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence            7777775  45788998876 444444332211 11111121                        12222233455789


Q ss_pred             EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      +|+..++..........    ...+..+.++|++.+++.+  ++.+++||+.+++.+..+     .+...+.+++|+|||
T Consensus       223 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         223 TMDLETGEMAMREVRIM----DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEETTTCCEEEEEEEEC----SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECTTS
T ss_pred             EEEcCCCcEEEEEecCC----CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-----cCCCCEEEEEECCCC
Confidence            99998887665443322    2247888999999998776  478999999999999887     355678999999999


Q ss_pred             CeEEEccCCCeEEEeccce
Q 016522          356 SALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       356 ~~l~s~~~dg~v~iw~~~~  374 (388)
                      ++|++++.||.|+||+...
T Consensus       292 ~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         292 STVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             CEEEEESBSSEEEEEETTT
T ss_pred             CEEEEEeCCCcEEEEECCC
Confidence            9999999999999999754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=9.9e-25  Score=185.25  Aligned_cols=275  Identities=11%  Similarity=0.028  Sum_probs=194.2

Q ss_pred             EEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCCCCCCCce
Q 016522           73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      ++|++++++|++++.+++|.+||+.+++.+.++..+ ...+.+++|+|||+++++ +..++.|.+||+.+++       .
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~-------~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-------N   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------E
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe-------e
Confidence            578999999999999999999999999999988754 456889999999998754 5578999999998854       2


Q ss_pred             eEEecc------cccceEEEEEEeCCCceEEEee------------CCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522          151 SRMLSG------HKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV  212 (388)
Q Consensus       151 ~~~~~~------~~~~v~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~  212 (388)
                      ...+..      +...+..++|+|+|.. +++++            .++.+.+||..+++....+..   ......+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~-l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~  150 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT---FPMPRQVYLM  150 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE---EECCSSCCCE
T ss_pred             eeeecccccccccCCceEEEEEecCCCE-EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe---eeccCceEEE
Confidence            222221      2234567899999854 54443            477889999887765433311   1122344455


Q ss_pred             EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC--------------------------EEE
Q 016522          213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN--------------------------RFG  266 (388)
Q Consensus       213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~l~  266 (388)
                      .+++ ++.+++.+   +.+.+|+..+. ..+..+..+. ....+.++|++.                          .++
T Consensus       151 ~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (346)
T d1jmxb_         151 RAAD-DGSLYVAG---PDIYKMDVKTG-KYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  224 (346)
T ss_dssp             EECT-TSCEEEES---SSEEEECTTTC-CEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             EecC-CCEEEEeC---CcceEEEccCC-CEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEe
Confidence            5554 66555543   46889998876 5555554332 223334444433                          233


Q ss_pred             EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522          267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (388)
Q Consensus       267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (388)
                      ++..++.+.+||+.++...........    ..+..+.+++++.+++.... +.|.+||..+++.+..+.     +...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-----~~~~~  294 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKTHTQEFADLT----ELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-----LDHTY  294 (346)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECS----SCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-----CSSCC
T ss_pred             eccCCceEEEEECCCCceEEEEeeccc----ceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-----CCCCE
Confidence            444556788888888776655443322    24788889999888777654 579999999999888762     44579


Q ss_pred             eEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          347 TCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       347 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      .+++|+|||++|++++.||.|+||+...
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            9999999999999999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=9.4e-24  Score=178.45  Aligned_cols=276  Identities=11%  Similarity=0.058  Sum_probs=201.5

Q ss_pred             ccCCCCCcccCCCCceeeeccccc--cCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCc-----cEEE
Q 016522           43 RSQGRAPVSFGPTDLVCCRTLQGH--AGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMT  114 (388)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~  114 (388)
                      .+.+..+..|+..+.+.++++..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..
T Consensus         7 ~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~   86 (337)
T d1pbyb_           7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG   86 (337)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred             EcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceee
Confidence            445677888999999999988754  4568899999999987 5667899999999999999888876543     3457


Q ss_pred             EEECCCCCEEEEeeC------------CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522          115 CAFSPTGQSVACGGL------------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT  182 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~------------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (388)
                      ++|+|++++++++..            ++.+.+||..+..       ....+. +...+..++|+|+| .++++++.  .
T Consensus        87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~--~  155 (337)
T d1pbyb_          87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFE-APRQITMLAWARDG-SKLYGLGR--D  155 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEE-CCSSCCCEEECTTS-SCEEEESS--S
T ss_pred             EEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-------EEEecc-ccCCceEEEEcCCC-CEEEEEcC--C
Confidence            899999999988763            5678889988754       344444 34567889999998 45666654  4


Q ss_pred             EEEEecCCCceEEEeecccccC-CccCeEEEEeeC----------------CCCcEEEEeeCCCceEEEECCCCCcceEE
Q 016522          183 CVLWDITTGLRTSVFGGEFQSG-HTADVLSVSISG----------------SNSRMFVSGSCDSTARLWDTRVASRAVRT  245 (388)
Q Consensus       183 v~i~d~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  245 (388)
                      +.+||..+++....+....... .........+.+                ........+..++.+.+||...+......
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            7789999988877763211000 000000000000                01111122333456889998877545555


Q ss_pred             EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522          246 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  325 (388)
Q Consensus       246 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (388)
                      +..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+....      .+.+++|+|||++|++++.++.|++||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC------CEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            66777888899999999988766  5789999999999888775432      378999999999999999999999999


Q ss_pred             cccceEEeeccC
Q 016522          326 TLLAKVVLNLGS  337 (388)
Q Consensus       326 ~~~~~~~~~~~~  337 (388)
                      ..+++.+.++..
T Consensus       308 ~~t~~~v~~i~~  319 (337)
T d1pbyb_         308 AETLEKKGQVDL  319 (337)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            999999888743

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=2.9e-20  Score=159.32  Aligned_cols=290  Identities=9%  Similarity=-0.067  Sum_probs=200.8

Q ss_pred             ccccCCeeEEEeCCCCCeEEEE-----eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------
Q 016522           64 QGHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------  128 (388)
Q Consensus        64 ~~h~~~v~~~~~~~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------  128 (388)
                      .+|.+++.+++++|||+.++..     +.++.|.+||..+++.+..+..+..+  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4588899999999999988764     23467999999999999988766543  799999999999875          


Q ss_pred             CCCcEEEEeCCCCCCCCCCCceeEEecccccc-------eEEEEEEeCCCceEEE-eeCCCeEEEEecCCCceEEEeecc
Q 016522          129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-------VSCCQYVPDEDTHLIT-SSGDQTCVLWDITTGLRTSVFGGE  200 (388)
Q Consensus       129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~  200 (388)
                      .++.|.+||..+++       .......+...       ...+.|++++...++. ...++.+.+|+....+.....   
T Consensus        95 ~~~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---  164 (373)
T d2madh_          95 RTDYVEVFDPVTFL-------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---  164 (373)
T ss_pred             cceEEEEEECCCCc-------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---
Confidence            35789999999865       33333333322       2457888887554333 345678889998877655443   


Q ss_pred             cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------cCCeeEEEEccCCCEEEEeeCCCcE
Q 016522          201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTC  274 (388)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i  274 (388)
                            ....++.++|.....+++.+.||.+.+|+.... ........+      ......+.+++++. ++..+.++.+
T Consensus       165 ------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v  236 (373)
T d2madh_         165 ------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKI  236 (373)
T ss_pred             ------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceE
Confidence                  335678889866677788999999999998876 443333221      12234455665554 4555678899


Q ss_pred             EEEECCCCceeeEeeeccCC-------CCCCCeEEEEecCCCCEEE----------EEecCCcEEEEEcccceEEeeccC
Q 016522          275 RLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLF----------AGYSNGDCYVWDTLLAKVVLNLGS  337 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~  337 (388)
                      .+|+................       ........+++++++..++          ....++.+.+||..+++.+..+  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~--  314 (373)
T d2madh_         237 LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--  314 (373)
T ss_pred             EEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe--
Confidence            99998876543322211100       0011234456666665444          4455678999999999988876  


Q ss_pred             CCCCcCCCeeEEEECCCCCe--EEEccCCCeEEEeccceeeee
Q 016522          338 LQNSHEGRITCLGLSADGSA--LCTGSWDTNLKVSLHYYIFVL  378 (388)
Q Consensus       338 ~~~~~~~~v~~~~~~~~~~~--l~s~~~dg~v~iw~~~~~~~~  378 (388)
                         .+...+.+++|+|||+.  +++++.|+.|+||+......+
T Consensus       315 ---~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         315 ---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ---cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence               45677899999999984  468899999999997654433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.1e-21  Score=161.89  Aligned_cols=284  Identities=12%  Similarity=0.086  Sum_probs=186.0

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEe--eeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH  157 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  157 (388)
                      .+++++.|++|++|++.+...+..+  ..+...+..++|+|||++|++++ .|+.|++|++.....   .... .....+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---~~~~-~~~~~~   81 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---ALTF-AAESAL   81 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---CEEE-EEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---cEEE-eeeccc
Confidence            4577889999999999765444333  35667899999999999986655 589999999986431   1111 112234


Q ss_pred             ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCCceEEEEC
Q 016522          158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDT  236 (388)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~  236 (388)
                      ...+..++|+|+|..+++++..++.|.+|+............   ..+...+.++.++| ++++++++ ..+..+.+|+.
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISP-DNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc---cCCCccceEEEeee-cceeeeccccccceeeEEEe
Confidence            455678999999854444444678999999887765544421   35666788899999 55555554 45667999998


Q ss_pred             CCCCcceEEE-----ecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceee----Eeee-ccCCCCCCCeEEEEe
Q 016522          237 RVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ----VYYQ-QHGENEIPHVTSIAF  305 (388)
Q Consensus       237 ~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~----~~~~-~~~~~~~~~i~~~~~  305 (388)
                      ..........     .........++|++++.+++... ..+...+|+........    .... ............+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            7653332211     12334567899999998877654 55667788765433211    1111 111122334677899


Q ss_pred             cCCCCEEEEE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEEEeccc
Q 016522          306 SISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVSLHY  373 (388)
Q Consensus       306 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~  373 (388)
                      +++++++++. ..++.+.+|++............ ......+.+++|+|||++|++++ .++.|++|...
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            9999976655 45678999987654322222100 23345678999999999877665 56899999654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=4.7e-22  Score=168.48  Aligned_cols=274  Identities=12%  Similarity=0.021  Sum_probs=195.6

Q ss_pred             ccccCCCCCcccCCCCceeeeccc-cccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCc------cE
Q 016522           41 YSRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCA------WV  112 (388)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~------~v  112 (388)
                      ...+.+.....|+..+.+++++++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.....      .+
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~   91 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM   91 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCce
Confidence            344556778899999999999987 466778999999999987 5566789999999999998877765432      35


Q ss_pred             EEEEECCCCCEEEEee------------CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522          113 MTCAFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD  180 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (388)
                      ..++|+|||+++++++            .++.+.+|+..++....    .... ......+..+.+.+++ .++++ +  
T Consensus        92 ~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~~~~-~--  162 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK----PVRT-FPMPRQVYLMRAADDG-SLYVA-G--  162 (346)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC----CSEE-EECCSSCCCEEECTTS-CEEEE-S--
T ss_pred             EEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee----EEEe-eeccCceEEEEecCCC-EEEEe-C--
Confidence            6789999999998775            46778888887644210    1111 1112334445555554 44443 2  


Q ss_pred             CeEEEEecCCCceEEEeecccccCCccCeEEEEeeC-------------------------CCCcEEEEeeCCCceEEEE
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-------------------------SNSRMFVSGSCDSTARLWD  235 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------~~~~~l~~~~~dg~i~i~d  235 (388)
                      +.+.+|++.+++....+...      .....+.++|                         .....++++..++.+.+||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         163 PDIYKMDVKTGKYTVALPLR------NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             SSEEEECTTTCCEEEEECST------TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             CcceEEEccCCCEEEEEecC------CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            45889999998887776321      1111111222                         1223344455566788899


Q ss_pred             CCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE
Q 016522          236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  315 (388)
Q Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (388)
                      .............+...+..+.+++++.+++.... +.|.+||+.+++.+..+....      .+.+++|+|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~------~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEE
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCC------CEEEEEEcCCCCEEEEE
Confidence            88875556666778888999999998888877654 579999999998887765432      37899999999999999


Q ss_pred             ecCCcEEEEEcccceEEeecc
Q 016522          316 YSNGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~  336 (388)
                      +.|+.|++||..+++.+..+.
T Consensus       310 ~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         310 GTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             SBSSEEEEEETTTTEEEEEEE
T ss_pred             eCCCcEEEEECccCCEEEEEE
Confidence            999999999999999998874

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=4e-20  Score=158.41  Aligned_cols=282  Identities=10%  Similarity=0.009  Sum_probs=198.3

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCCccE-----
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCAWV-----  112 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~v-----  112 (388)
                      ....|+....+.+.++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....     
T Consensus        48 ~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~  125 (373)
T d2madh_          48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             eEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEecc
Confidence            3556788888888888877654  799999999998875          45789999999999988887766543     


Q ss_pred             --EEEEECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          113 --MTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       113 --~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                        ..+.|+++++.++...  .++.+.+|+.....           ...+.....++.++|++...+++.+.|+.+.+||.
T Consensus       126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~  194 (373)
T d2madh_         126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEc
Confidence              4567888888766554  35678888876532           12233446678999999888889999999999999


Q ss_pred             CCCceEEEeeccccc-CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEecc----------cCCeeEE
Q 016522          189 TTGLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH----------EGDVNTV  256 (388)
Q Consensus       189 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~----------~~~i~~~  256 (388)
                      ..+............ ........+.+.  ....++..+.++.+.+|+....... ......+          ......+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (373)
T d2madh_         195 AGGAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             CCceeeEEEeeeccccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceee
Confidence            988776655322111 111222333444  3345556677889999998765211 1111111          1223445


Q ss_pred             EEccCCCEE----------EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE--EEEEecCCcEEEE
Q 016522          257 KFFPDGNRF----------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL--LFAGYSNGDCYVW  324 (388)
Q Consensus       257 ~~~~~~~~l----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~i~i~  324 (388)
                      +++|++..+          +....++.+.+||..+++.+..+...      ..+..++|+|||+.  +++++.|+.|++|
T Consensus       273 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~------~~~~~~a~spDG~~~l~vt~~~d~~v~v~  346 (373)
T d2madh_         273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------HDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             EEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC------CCeeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence            566655544          44556678999999999888776432      24789999999984  4678889999999


Q ss_pred             EcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                      |+.+++.+..+    ..+....+.+++.++
T Consensus       347 D~~tg~~~~~~----~~~g~~P~~l~~~~~  372 (373)
T d2madh_         347 DAGAGDQDQST----VELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCCCEEEEE----CCCCCCCcEEEEecC
Confidence            99999999998    667777888887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.8e-20  Score=155.85  Aligned_cols=282  Identities=9%  Similarity=0.094  Sum_probs=186.3

Q ss_pred             cccCCCCCcccCCCCc---eeeeccccccCCeeEEEeCCCCCeEEEEe-CCCcEEEEECCCCCeeeEe---eeCCccEEE
Q 016522           42 SRSQGRAPVSFGPTDL---VCCRTLQGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAI---KLPCAWVMT  114 (388)
Q Consensus        42 ~~~~~~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~---~~~~~~v~~  114 (388)
                      +.+.+..+..|+....   +.++. ..|.+.|.+|+|+|||++|++++ .|+.|++|++........+   ......+..
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            3445566777865432   33333 35889999999999999886554 5899999999776543332   233445778


Q ss_pred             EEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522          115 CAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR  193 (388)
Q Consensus       115 ~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  193 (388)
                      ++|+|+|++|++++. ++.+.+|+.....     .........+...+.++.++|++...+.....+..|.+|+......
T Consensus        88 l~~spDg~~l~v~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             EEEcCCCCEEeecccCCCceeeecccccc-----ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            999999999999875 6789999887633     1123334456677888999999865555555677899999877643


Q ss_pred             EEEee-cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE---Ee------cccCCeeEEEEccCCC
Q 016522          194 TSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---FH------GHEGDVNTVKFFPDGN  263 (388)
Q Consensus       194 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~------~~~~~i~~~~~~~~~~  263 (388)
                      ..... .............+++++.....+.+....+...+|+..........   ..      ........++++++++
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence            33221 11113445667889999855555555666778888887654322221   11      1223466788999998


Q ss_pred             EEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEE--cccceE
Q 016522          264 RFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWD--TLLAKV  331 (388)
Q Consensus       264 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~  331 (388)
                      +++.. ..++.+.+|++..............  ....+..++|+|||++|++++. ++.|.+|+  ..+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeC--CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            76655 4677899999876554443332211  1123678999999998877754 57899985  455644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.4e-20  Score=155.98  Aligned_cols=284  Identities=15%  Similarity=0.138  Sum_probs=188.2

Q ss_pred             CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCCc-------
Q 016522           48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-------  110 (388)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~-------  110 (388)
                      ....|+....+.+.++..+..+  .++|+|||++|++++          .|+.|++||..+++....+..+..       
T Consensus        29 ~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~  106 (355)
T d2bbkh_          29 QQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT  106 (355)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             eEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence            3556888888888888776544  799999999887653          478999999999999888765442       


Q ss_pred             cEEEEEECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522          111 WVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI  188 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~  188 (388)
                      ....++|+|++++++++.  .+..+.+|+..++.       ....+..+....   . .+.+....+..+.||....+..
T Consensus       107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~-~~~~~~~~~~~~~dg~~~~v~~  175 (355)
T d2bbkh_         107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVPDCYH---I-FPTAPDTFFMHCRDGSLAKVAF  175 (355)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCSEEE---E-EEEETTEEEEEETTSCEEEEEC
T ss_pred             CCceEEEecCCCeeEEecCCCCceeeeeecCCCc-------EeeEEecCCcce---E-eecCCcceEEEcCCCCEEEEEe
Confidence            234678999999888764  45689999998754       333333322111   1 1111223344444554444443


Q ss_pred             CCCceEEEee-cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-EEEecc----------cCCeeEE
Q 016522          189 TTGLRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGH----------EGDVNTV  256 (388)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~----------~~~i~~~  256 (388)
                      .......... ......+...+....+.+ ++..++.++.++.+++|++....... .....+          ......+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  254 (355)
T d2bbkh_         176 GTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV  254 (355)
T ss_dssp             CSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred             cCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEE
Confidence            3332222221 111123344455566776 66677888899999999998663211 111111          1234568


Q ss_pred             EEccCCCEEEEeeCC----------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcEEEE
Q 016522          257 KFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVW  324 (388)
Q Consensus       257 ~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~  324 (388)
                      ++++++..++....+          ..|.+||..+++.+..+....      .+.+++|+|||+  +++++..|+.|++|
T Consensus       255 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~------~~~~~a~spDG~~~l~v~~~~d~~i~v~  328 (355)
T d2bbkh_         255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIH  328 (355)
T ss_dssp             EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC------CEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence            899999988776543          369999999998887765432      378999999998  45566779999999


Q ss_pred             EcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522          325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADG  355 (388)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  355 (388)
                      |..+++.+.++    ..+......+.+.++|
T Consensus       329 D~~tg~~~~~i----~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         329 DAESGEELRSV----NQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTCCEEEEE----CCCCSSCCEEECCCCC
T ss_pred             ECCCCCEEEEE----eCcCCCccEEEeCCCC
Confidence            99999999988    5566666666665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.6e-20  Score=155.90  Aligned_cols=286  Identities=12%  Similarity=-0.011  Sum_probs=185.4

Q ss_pred             CeeEEEeCCCCCeEEEEe-----CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcE
Q 016522           69 KVYSLDWTSERNRIVSAS-----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVC  133 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i  133 (388)
                      ++.-.+.+||++++++..     .++.|.+||..+++.+.++..+..+  .++|+|||++|++.+          .++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344456789999887653     4567999999999999988876554  699999999888753          47899


Q ss_pred             EEEeCCCCCCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEE-eeCCCeEEEEecCCCceEEEeeccccc--
Q 016522          134 SIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLIT-SSGDQTCVLWDITTGLRTSVFGGEFQS--  203 (388)
Q Consensus       134 ~vw~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~--  203 (388)
                      .+||..+++       .......+       ......++|++++...++. .+.+..+.+||..+++....+......  
T Consensus        81 ~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          81 EVFDPVTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEECTTTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEECCCCC-------EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            999998865       33332221       1223457899998543332 345678999999999888776311000  


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  283 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  283 (388)
                      ........+.++++...+++....++.+.+++.....      ..+...+....+.+++..++.++.++.+.+|++..+.
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence            0011122233444222222223333334444333221      1233345667788888899999999999999998765


Q ss_pred             eeeEeeeccC-------CCCCCCeEEEEecCCCCEEEEEecCC----------cEEEEEcccceEEeeccCCCCCcCCCe
Q 016522          284 QLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGSLQNSHEGRI  346 (388)
Q Consensus       284 ~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~v  346 (388)
                      ..........       .........+++++++..++....++          .|.+||..+++.+..+     .+...+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~-----~~~~~~  302 (355)
T d2bbkh_         228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEI  302 (355)
T ss_dssp             CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEE
T ss_pred             EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe-----cCCCCE
Confidence            4322111000       00011234588999999887765443          6999999999988876     245668


Q ss_pred             eEEEECCCCC--eEEEccCCCeEEEeccce
Q 016522          347 TCLGLSADGS--ALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       347 ~~~~~~~~~~--~l~s~~~dg~v~iw~~~~  374 (388)
                      .+++|+|||+  ++++++.|+.|+||+...
T Consensus       303 ~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         303 DSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            9999999998  456778899999998754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.1e-16  Score=136.61  Aligned_cols=265  Identities=10%  Similarity=-0.015  Sum_probs=179.5

Q ss_pred             CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCCcc-------
Q 016522           49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCAW-------  111 (388)
Q Consensus        49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-------  111 (388)
                      ...+++...+.+.++.++..+  .++|+|||+.|++++          .|+.|.+||..+++.+..+..+...       
T Consensus        48 ~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~  125 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             EEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCC
Confidence            334578888888888877665  589999999888764          3678999999999999888765432       


Q ss_pred             EEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522          112 VMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT  190 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  190 (388)
                      ...++|+|||++++++. .++.+.+||+.+.+       .......+...    .+.+.+...++..+.||.+.+++...
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-------~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-------DDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTE-------EEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCc-------EeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecC
Confidence            34689999999998876 57999999998855       44444443332    22344456788888999999998876


Q ss_pred             CceEEEee-cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ec----------ccCCeeEEE
Q 016522          191 GLRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HG----------HEGDVNTVK  257 (388)
Q Consensus       191 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~----------~~~~i~~~~  257 (388)
                      ........ ......+...+....+.+ ++..+.+  .++.+.+++..... .....  ..          .......++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a  270 (368)
T d1mdah_         195 APAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWA--VASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEEC--BSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             Cceeeeeeecccccccccceeeccccc-CcEEEEe--cCCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEE
Confidence            54433221 111123334445555655 4444433  34567777765441 11111  00          112234588


Q ss_pred             EccCCCEEEEeeCC---------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-E-EEEEecCCcEEEEEc
Q 016522          258 FFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-L-LFAGYSNGDCYVWDT  326 (388)
Q Consensus       258 ~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-l~~~~~dg~i~i~d~  326 (388)
                      ++|++..++....+         ..|.+||..+++.+..+....      .+..++|+|||+ + ++++..++.|++||.
T Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~------~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC------ceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            89988877665432         359999999998887765432      378899999997 3 455667899999999


Q ss_pred             ccceEEeecc
Q 016522          327 LLAKVVLNLG  336 (388)
Q Consensus       327 ~~~~~~~~~~  336 (388)
                      .+++.+..+.
T Consensus       345 ~tgk~~~~i~  354 (368)
T d1mdah_         345 ASDQDQSSVE  354 (368)
T ss_dssp             SSCEEEEECC
T ss_pred             CCCCEEEEEE
Confidence            9999998883

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=7.5e-17  Score=137.54  Aligned_cols=284  Identities=10%  Similarity=-0.062  Sum_probs=187.8

Q ss_pred             ccCCeeEEEeCCCCCeE--E-EEeCCCc--EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CC
Q 016522           66 HAGKVYSLDWTSERNRI--V-SASQDGR--LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LD  130 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l--~-t~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d  130 (388)
                      +.++...++..++++..  + ++..+|.  |.+||..+++.+..+..+...  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            45566666778888743  2 2344444  667799999999988877764  589999999998754          36


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEecccc-------cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLSGHK-------GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      +.|.+||..+.+       ....+..+.       .....++|+|+|..++++...++.+.+||+.+++....+.     
T Consensus        96 ~~v~v~D~~t~~-------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-----  163 (368)
T d1mdah_          96 DYVEVFDPVTFL-------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-----  163 (368)
T ss_dssp             EEEEEECTTTCC-------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-----
T ss_pred             CeEEEEECCCCc-------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-----
Confidence            789999998755       333332221       1234589999986655555678999999999998888773     


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE-----EecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-----FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  278 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  278 (388)
                      .+....    +.|.....++..+.||.+.++++.........     ...+...+....+.+++..+.+.  ++.+.+++
T Consensus       164 ~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~  237 (368)
T d1mdah_         164 SASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGD  237 (368)
T ss_dssp             CSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEE
T ss_pred             ccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEe
Confidence            222211    22224567777888999999988765332221     12233445567777777665544  45667777


Q ss_pred             CCCCceeeEeeeccCC-------CCCCCeEEEEecCCCCEEEEEecCC---------cEEEEEcccceEEeeccCCCCCc
Q 016522          279 IRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       279 ~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      +..+............       ........+++++++..+++...++         .|.+||..+++.+..+     .+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----~~  312 (368)
T d1mdah_         238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SN  312 (368)
T ss_dssp             CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----EE
T ss_pred             ecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-----cC
Confidence            6655443322111000       0001134578899988776654332         5999999999988876     34


Q ss_pred             CCCeeEEEECCCCCe--EEEccCCCeEEEeccce
Q 016522          343 EGRITCLGLSADGSA--LCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       343 ~~~v~~~~~~~~~~~--l~s~~~dg~v~iw~~~~  374 (388)
                      ...+.+++|+|||+.  ++++..|+.|+||+...
T Consensus       313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            567899999999973  46777899999999754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.68  E-value=1.6e-15  Score=128.46  Aligned_cols=264  Identities=12%  Similarity=0.041  Sum_probs=174.2

Q ss_pred             EEEEeCCCcEEEEECCCCCeeeEeeeC------------------------------CccEEEEEECCCCCEEEEee-CC
Q 016522           82 IVSASQDGRLIVWNALTSQKTHAIKLP------------------------------CAWVMTCAFSPTGQSVACGG-LD  130 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~~~~-~d  130 (388)
                      +++++.+|.|++|++.+++.+..+...                              ........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            568889999999999999887776431                              12244555678999987664 67


Q ss_pred             CcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCCCeE------------------EEEecCCC
Q 016522          131 SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTC------------------VLWDITTG  191 (388)
Q Consensus       131 g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v------------------~i~d~~~~  191 (388)
                      ++|.++|+.+.+       ....+. .+...+..++|+|++....+++..+..+                  ..+|..+.
T Consensus        94 ~rVavIDl~t~k-------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          94 TRVARIRLDIMK-------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             TEEEEEETTTTE-------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             CEEEEEECCCCc-------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            899999999854       333332 3456788999999986544444333333                  45777777


Q ss_pred             ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----------------------------------------Cc
Q 016522          192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----------------------------------------ST  230 (388)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------------------------------------g~  230 (388)
                      +....+.      .......+.++| +++++++++.+                                         +.
T Consensus       167 ~v~~qI~------v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         167 DVAWQVI------VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             SEEEEEE------ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             eeeEEEe------cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence            7666552      223567788888 66666665533                                         23


Q ss_pred             eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE-EeeCCCcEEEEECCCCcee--------eEeeeccCCCCCCCeE
Q 016522          231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQL--------QVYYQQHGENEIPHVT  301 (388)
Q Consensus       231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~i~  301 (388)
                      +.+++.... ..+..+..... ...+.++|||++++ ++..+++|.+||+.+....        ..+...  ....-...
T Consensus       240 ~vvd~~~~~-~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~--~~~glgpl  315 (441)
T d1qnia2         240 PVVDGRGES-EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE--PELGLGPL  315 (441)
T ss_dssp             CEEECSSSC-SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC--CBCCSCEE
T ss_pred             EEEEcccCC-ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee--cccccCcc
Confidence            333333322 44555554433 57899999999875 5678999999998753211        111111  11122356


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEEcccc----------eEEeecc-CCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522          302 SIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLG-SLQNSHEGRITCLGLSADGSALCTGSW  363 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~  363 (388)
                      ..+|+++|..+.+...|..|..|++...          ..+..+. ....+|...+.+.+++|||++|++++.
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            6789999988888889999999997421          1222221 112578888888899999999999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=3.4e-14  Score=124.97  Aligned_cols=131  Identities=9%  Similarity=-0.010  Sum_probs=90.9

Q ss_pred             CCCCcccCCCCceeee-----ccccccCCeeEEEeCCCCCeEEEEeC---------CCcEEEEECCCCCeeeEeeeCCcc
Q 016522           46 GRAPVSFGPTDLVCCR-----TLQGHAGKVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAW  111 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~  111 (388)
                      +.....|++...+...     +|..|...|.++.|||||++|+.++.         ++.+.+||+.+++ ...+..+...
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~  113 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNN  113 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTT
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCcc
Confidence            4456678887776654     55666788999999999999998753         5678999998876 4557777888


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC--ceeEEecc---------cccceEEEEEEeCCCceEEEeeC
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSG  179 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~  179 (388)
                      +....|+|||+.+|.. .++.+.+|+..++.......  .....+.+         ..+....+.|+|+|. .|+....
T Consensus       114 ~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~  190 (470)
T d2bgra1         114 TQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQF  190 (470)
T ss_dssp             EEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEE
T ss_pred             ccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC-ccceeEe
Confidence            9999999999999986 46789999988765210000  00000111         223345678999985 5665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.1e-13  Score=117.13  Aligned_cols=238  Identities=11%  Similarity=-0.004  Sum_probs=149.7

Q ss_pred             ccCCeeEEEeCCCCCeEEEE-eCCCcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCC--EEEEeeCCC----------
Q 016522           66 HAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQ--SVACGGLDS----------  131 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~l~~~~~dg----------  131 (388)
                      |.-......++|||++|++. ..++.|.++|+.+++....+... ...+..++|+|+|+  +++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44556667778999988655 57789999999999988877653 56789999999998  444444332          


Q ss_pred             -------cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-------------------------
Q 016522          132 -------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-------------------------  179 (388)
Q Consensus       132 -------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------------------  179 (388)
                             .+..+|..+..       ....... .+....+.++|+|+..++++..                         
T Consensus       150 ~~~~~~~~~~~iD~~t~~-------v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMD-------VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             CGGGEEEEEEEEETTTCS-------EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             ccccccceEEeecCccce-------eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                   12345555432       2222222 2345678888887543333322                         


Q ss_pred             ---------------CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--
Q 016522          180 ---------------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--  242 (388)
Q Consensus       180 ---------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  242 (388)
                                     ++.+.+++.........+     .. ......+.++|++..+++++..+++|.+||+.+....  
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~I-----Pv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~  295 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-----PV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE  295 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEE-----CC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEEEE-----eC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh
Confidence                           234444444444455554     22 3346778999944445677888999999998653211  


Q ss_pred             -----eEEEecc---cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC----------ceeeEeeeccCCCCCCCeEEEE
Q 016522          243 -----VRTFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG----------HQLQVYYQQHGENEIPHVTSIA  304 (388)
Q Consensus       243 -----~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~  304 (388)
                           ...+.++   .-.....+|+++|..+.+...|..|..|++...          .....+..+....|...+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t  375 (441)
T d1qnia2         296 DKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES  375 (441)
T ss_dssp             TSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             ccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence                 1111111   112355689999988888999999999997421          1223333333334444566677


Q ss_pred             ecCCCCEEEEEec
Q 016522          305 FSISGRLLFAGYS  317 (388)
Q Consensus       305 ~~~~~~~l~~~~~  317 (388)
                      ++|||+||++++.
T Consensus       376 ~~pdGk~l~s~~k  388 (441)
T d1qnia2         376 RDADGKWLVVLSK  388 (441)
T ss_dssp             TTCCCCEEEEEES
T ss_pred             cCCCCcEEEecCc
Confidence            9999999999943

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7.2e-11  Score=95.13  Aligned_cols=239  Identities=13%  Similarity=0.077  Sum_probs=148.1

Q ss_pred             cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC---cEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522           90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY  166 (388)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (388)
                      .|.|.|.. |.....+......+..-+|||||+.||......   .+.+.+.....        ...+..+........|
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--------eeEEeeeeccccccee
Confidence            47777865 444444544556688999999999998765433   46666665533        3455566778888999


Q ss_pred             EeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE
Q 016522          167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  246 (388)
Q Consensus       167 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  246 (388)
                      +|+|..++.....++...++............    ...........+++.....+++...+|...+|............
T Consensus        91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~  166 (269)
T d2hqsa1          91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI  166 (269)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEEC----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             cCCCCeeeEeeecCCccceeecccccccceee----eeccccccccccccccccceecccccCCceEeeeecccccceee
Confidence            99987665555555544333332222211110    23344445556666556666666667765555444333444455


Q ss_pred             ecccCCeeEEEEccCCCEEEEeeCCC-c--EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---Cc
Q 016522          247 HGHEGDVNTVKFFPDGNRFGTGSDDG-T--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GD  320 (388)
Q Consensus       247 ~~~~~~i~~~~~~~~~~~l~~~~~dg-~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~  320 (388)
                      ...........|+|+++.++..+.++ .  +.+.+...+..  ......     .......|+|||+.|+..+..   ..
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~-----~~~~~p~~SPDG~~i~f~s~~~~~~~  239 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSST-----FLDETPSLAPNGTMVIYSSSQGMGSV  239 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCS-----SSCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecC-----ccccceEECCCCCEEEEEEcCCCCcE
Confidence            55666777889999999988776544 3  44555544433  222211     235678899999988765543   36


Q ss_pred             EEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      |+++++..+.... +    ....+.+...+|+|
T Consensus       240 l~~~~~dg~~~~~-l----t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         240 LNLVSTDGRFKAR-L----PATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTSCCEEE-C----CCSSSEEEEEEECC
T ss_pred             EEEEECCCCCEEE-E----eCCCCcEEeEEeCC
Confidence            8899998766543 4    34566788889998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=2.9e-10  Score=93.13  Aligned_cols=248  Identities=10%  Similarity=0.055  Sum_probs=165.8

Q ss_pred             ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522           57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF  136 (388)
Q Consensus        57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  136 (388)
                      .+.+..+.... .+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|+++|+++++...++.+..+
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            34555554322 58899999999999999999999888854 33 33445556779999999999999998888888888


Q ss_pred             eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc-----ccCCccCeEE
Q 016522          137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLS  211 (388)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-----~~~~~~~i~~  211 (388)
                      +......   .. ..............+++.+++ +++++.+.++.+..+|...+..........     ..........
T Consensus        95 ~~~~~~~---~~-~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          95 SLVKSDG---TV-ETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EEECTTS---CE-EEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             Eeccccc---ce-eeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            8765321   11 111112334567889999986 677887888999999988775443332110     0122234556


Q ss_pred             EEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          212 VSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +.+.  +..++++.+..+.|..++....... .............++++++|+++++...++.|..++... +.......
T Consensus       170 i~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~  246 (302)
T d2p4oa1         170 LKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQA  246 (302)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECG
T ss_pred             cccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEec
Confidence            6665  4567777888899998887754221 111222344567899999999888888899999998653 33222221


Q ss_pred             ccCCCCCCCeEEEEe---cCCCCEEEEEecC
Q 016522          291 QHGENEIPHVTSIAF---SISGRLLFAGYSN  318 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~---~~~~~~l~~~~~d  318 (388)
                      .   ......++++|   ++|++.|++++..
T Consensus       247 ~---~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         247 E---QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             G---GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C---CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            1   12234789999   6788888776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=4.1e-11  Score=95.99  Aligned_cols=238  Identities=10%  Similarity=-0.017  Sum_probs=150.1

Q ss_pred             CCeeEEEeCCCCCeEEEE-eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG  146 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  146 (388)
                      -.-.+|++.++|+.+++. +..+.+..++...................+++++++.++++...++.+++++-....    
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~----   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ----   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC----
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce----
Confidence            346899999999966654 455777777655443332222223346788999999988777766666665544321    


Q ss_pred             CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522          147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  226 (388)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  226 (388)
                         .... ........++++.+++ +++++-..+..+..++..........     .........+++.+ +++++++..
T Consensus        90 ---~~~~-~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~~~v~~~  158 (260)
T d1rwia_          90 ---TVLP-FDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDT  158 (260)
T ss_dssp             ---EECC-CCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECC-----CCSCCSCCEEEECT-TCCEEEEEG
T ss_pred             ---eeee-eeeeeecccccccccc-eeEeeccccccccccccccceeeeee-----ecccCCcceeeecC-CCCEeeecc
Confidence               1111 1223456789998876 56666666667777776554432221     22334567889988 778888888


Q ss_pred             CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522          227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  306 (388)
Q Consensus       227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (388)
                      .++.|..+|.... ...............++++++|+++++....+.|..++..... ......    ........++++
T Consensus       159 ~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~----~~~~~P~~i~~d  232 (260)
T d1rwia_         159 DNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF----TGLNTPLAVAVD  232 (260)
T ss_dssp             GGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC----CSCCCEEEEEEC
T ss_pred             ccccccccccccc-eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc----CCCCCeEEEEEe
Confidence            8889999997754 2222222344567889999999988888888888888865432 222211    112246889999


Q ss_pred             CCCCEEEEEecCCcEEEEEc
Q 016522          307 ISGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~  326 (388)
                      ++|.++++-..+++|+.++.
T Consensus       233 ~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECC
T ss_pred             CCCCEEEEECCCCEEEEEeC
Confidence            99887766556666665553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=4.9e-11  Score=95.54  Aligned_cols=237  Identities=9%  Similarity=0.025  Sum_probs=152.6

Q ss_pred             cEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          111 WVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ....++++++|+.+++. +..+.+..++.....       .......-......+++.+++ .++++....+.+++++-.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----C-------EEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-------EEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeec
Confidence            46899999999977664 455777777766522       111111112335678888886 566666666667666655


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      +......      .........+++.+ +++++++-..+..+..++............ .......++++|+++++++..
T Consensus        87 ~~~~~~~------~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          87 NNQTVLP------FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             SCCEECC------CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCCEEEEEG
T ss_pred             cceeeee------eeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCCEeeecc
Confidence            5443322      23345678999998 777877776677777777654422221112 223567899999999888888


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEE
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      .++.|..++...........     ........++++++|+++++...++.|..++..........    ...-.....|
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~-----~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~----~~~~~~P~~i  229 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAV  229 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCC-----SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC----CCSCCCEEEE
T ss_pred             ccccccccccccceeeeeec-----cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc----cCCCCCeEEE
Confidence            88899999977554332221     12234688999999998888777888998886544322211    2233567899


Q ss_pred             EECCCCCeEEEccCCCeEEEecc
Q 016522          350 GLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       350 ~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +++++|.++++-..+++|+....
T Consensus       230 ~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEeCCCCEEEEECCCCEEEEEeC
Confidence            99999988887677777775543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=1.3e-10  Score=95.30  Aligned_cols=232  Identities=10%  Similarity=0.036  Sum_probs=153.9

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..+..++++|||+++++...+++|..|+...         ....+......+.+++|.++| +++++...++.+..++..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g---------~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---------NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC---------CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC---------CEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEec
Confidence            3588899999999999998899988888654         233444556788999999997 577888788888888765


Q ss_pred             CCc--eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---------ccCCeeEEEE
Q 016522          190 TGL--RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HEGDVNTVKF  258 (388)
Q Consensus       190 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~i~~~~~  258 (388)
                      ...  ......    .........+++.+ +++++++.+.++.+..+|.......+.....         .......+.+
T Consensus        98 ~~~~~~~~~~~----~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1          98 KSDGTVETLLT----LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             CTTSCEEEEEE----CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             ccccceeeccc----cCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            432  222211    23455678899998 7888888888888888887765222222211         1123456666


Q ss_pred             ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE-EeeccC
Q 016522          259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGS  337 (388)
Q Consensus       259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  337 (388)
                      +. +.++++.+..+.|..++..............   .......++++++|++.++...++.|..++...... +...  
T Consensus       173 ~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~--  246 (302)
T d2p4oa1         173 FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA--  246 (302)
T ss_dssp             ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG--
T ss_pred             cC-CceeeecCCCCeEEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec--
Confidence            53 3455566678888888876644332221110   011256799999999888888889999998754332 2333  


Q ss_pred             CCCCcCCCeeEEEE---CCCCCeEEEccCC
Q 016522          338 LQNSHEGRITCLGL---SADGSALCTGSWD  364 (388)
Q Consensus       338 ~~~~~~~~v~~~~~---~~~~~~l~s~~~d  364 (388)
                        ...-..+++++|   ++|++.|+.++..
T Consensus       247 --~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         247 --EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             --GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence              223356899999   6788888765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.43  E-value=7.5e-10  Score=90.87  Aligned_cols=247  Identities=8%  Similarity=0.030  Sum_probs=150.5

Q ss_pred             ccEEEEEECCCCCEEEEeeC-------CCcEEEEeCCCCCCCCCCCceeEEec----ccccceEEEEEEeCCCceEEEee
Q 016522          110 AWVMTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSS  178 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~  178 (388)
                      .....++|.++|+++++...       +|.|..||..++.       ......    ...+.-..+.+.+++ +.++++.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~-------~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad   89 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDA-NQLFVAD   89 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSS-SEEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc-------EEEEECCccccCCCcceeEEEeCCC-CEEEEEE
Confidence            34567899999998776433       4678888877643       111111    112335679999987 4566666


Q ss_pred             CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---------------CCceEEEECCCCCcce
Q 016522          179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------------DSTARLWDTRVASRAV  243 (388)
Q Consensus       179 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~  243 (388)
                      ..+.|..+|.......... .......-...+.+++.+ ++++.++...               .|.|..++..  .. .
T Consensus        90 ~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~-~  164 (314)
T d1pjxa_          90 MRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-M  164 (314)
T ss_dssp             TTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-E
T ss_pred             CCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec--Cc-e
Confidence            6667888887665432211 110001112357788988 7777776322               2334444432  22 2


Q ss_pred             EEEecccCCeeEEEEccCCC-----EEEEeeCCCcEEEEECCCCceeeEeee--ccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522          244 RTFHGHEGDVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIAFSISGRLLFAGY  316 (388)
Q Consensus       244 ~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (388)
                      ..+...-...+.++|+|+++     ++++-+..+.|..||+.....+.....  ..........-.+++..+|++.++..
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~  244 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence            22333344457899999764     445556778899998765443322111  11111122356799999999888777


Q ss_pred             cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe-EEEccCCCeEEEeccc
Q 016522          317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKVSLHY  373 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~  373 (388)
                      ..+.|.+||...++....+    ......+++++|.+|++. .++.+.+|.|.-....
T Consensus       245 ~~g~I~~~dp~~g~~~~~i----~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEeCCCCEEEEEE----ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8889999998877655554    334467899999999874 4666667877665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.42  E-value=1.6e-10  Score=97.31  Aligned_cols=263  Identities=9%  Similarity=-0.002  Sum_probs=151.9

Q ss_pred             ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe--eeCCccEEEEEECCCCCEEE--Eee-CCCcEEEEeCCC
Q 016522           66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQSVA--CGG-LDSVCSIFNLNS  140 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~--~~~-~dg~i~vw~~~~  140 (388)
                      ....+.-|+|+|++++|.+++. +.+..|.+.........  .........++++++++.++  +.. ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455778999999999988765 56888876543322222  12233456778888888543  332 245565554432


Q ss_pred             CCCC--------CCCC--ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522          141 PTDK--------DGNL--PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL  210 (388)
Q Consensus       141 ~~~~--------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~  210 (388)
                      ....        ....  ............+.++.|+|+|..++++......|.+|+.......................
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1100        0000  00011112223467899999986555555556788888865543322221111133456788


Q ss_pred             EEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEe-----------------cccCCeeEEEEccCCCEEEEeeC-C
Q 016522          211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH-----------------GHEGDVNTVKFFPDGNRFGTGSD-D  271 (388)
Q Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-----------------~~~~~i~~~~~~~~~~~l~~~~~-d  271 (388)
                      .+.|+|+...+.++...+++|.+|++...... +....                 .+......+.++|+|++|+++.. +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            99999944444566667889999998765222 11111                 01122457899999999988743 2


Q ss_pred             -----CcEEEEECCCCceeeEe-eeccCCCCCCCeEEEEecC-CCCEEEEEe-cCCcEEEEEcccc
Q 016522          272 -----GTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSI-SGRLLFAGY-SNGDCYVWDTLLA  329 (388)
Q Consensus       272 -----g~i~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~  329 (388)
                           +.|..|++.....+... ..............++++| +|++|+++. .++.|.+|++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                 23777877654333222 1111122223457789998 789887765 5689999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=8.9e-10  Score=89.02  Aligned_cols=240  Identities=15%  Similarity=0.145  Sum_probs=161.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeCCCceEE-EeeCCCeE
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLI-TSSGDQTC  183 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~-~~~~dg~v  183 (388)
                      ....++++++|+.+++-..+..|++||.+..        ....+.      +.......+++.++....++ ..+.++.|
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI   95 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC--------EEEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence            3688999999998888777889999987641        122221      11122344565555444444 34455677


Q ss_pred             EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ecccCCeeEEEEccC
Q 016522          184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPD  261 (388)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~  261 (388)
                      ..++. .+.....+.    .........+++.+ ++.++++....+.+.+++...  ..+..+  ..+......+++.++
T Consensus        96 ~~~~~-~g~~~~~~~----~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          96 QIYNQ-YGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             EEECT-TSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSS
T ss_pred             ccccc-cccceeecC----CCcccccceecccc-CCcEEEEeeccceeeEeccCC--ceeecccccccccccceeeeccc
Confidence            77776 455555542    34456678888887 777888777778888888652  445544  234556788999999


Q ss_pred             CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCC
Q 016522          262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQN  340 (388)
Q Consensus       262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~  340 (388)
                      ++.+++....+.|.+||.. ++.+..+..   .........++++++|+++++-.. ++.|.+|+. +++.+..+..  .
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~---~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~--~  240 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES--K  240 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--S
T ss_pred             eeEEeeeccccceeeeecC-Cceeeeecc---cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC--C
Confidence            9988888888999999965 555555432   223345789999999997766443 457999984 5776655532  1


Q ss_pred             CcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522          341 SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY  374 (388)
Q Consensus       341 ~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~  374 (388)
                      ........|++.+||.++ +++.++.|++|.+..
T Consensus       241 ~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         241 VKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SCCSCEEEEEEETTTEEE-EEETTTEEEEEECSC
T ss_pred             CCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeee
Confidence            223467899999999755 456799999998764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=1.2e-10  Score=102.06  Aligned_cols=279  Identities=9%  Similarity=0.019  Sum_probs=152.8

Q ss_pred             ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC------------------CccE
Q 016522           51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP------------------CAWV  112 (388)
Q Consensus        51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------------------~~~v  112 (388)
                      .|+....+ ...+..|.+.+..+.|||||+.||... ++.+.+|+..+++........                  .+..
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            34545443 556888999999999999999999864 678999999888765443221                  1234


Q ss_pred             EEEEECCCCCEEEEeeCCCc-EEEEeCC---CCCCC-----------CCCC-ce--eEE---------------------
Q 016522          113 MTCAFSPTGQSVACGGLDSV-CSIFNLN---SPTDK-----------DGNL-PV--SRM---------------------  153 (388)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~-i~vw~~~---~~~~~-----------~~~~-~~--~~~---------------------  153 (388)
                      ..+.|+|||++|+....|.. +..|.+.   .....           .+.. +.  ...                     
T Consensus       174 ~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  253 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (470)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCH
T ss_pred             cccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCcc
Confidence            56789999999999866533 4333322   11000           0000 00  000                     


Q ss_pred             -ecccccceEEEEEEeCCCceEEEeeCCC---e--EEEEecCCCceEEEeecc--------cccCCccCeEEEEeeCC-C
Q 016522          154 -LSGHKGYVSCCQYVPDEDTHLITSSGDQ---T--CVLWDITTGLRTSVFGGE--------FQSGHTADVLSVSISGS-N  218 (388)
Q Consensus       154 -~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~--v~i~d~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~-~  218 (388)
                       .......+..+.|.+++...+......+   .  +..+|..++.........        ....+.....  .+.+. +
T Consensus       254 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~  331 (470)
T d2bgra1         254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEP--HFTLDGN  331 (470)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCC--EECTTSS
T ss_pred             ccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCc--eeeecCC
Confidence             0112234567888887632222222222   2  333455555433221100        0011111222  23332 3


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE-EEeeCCC----c--EEEEECCCCceeeEeeec
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDG----T--CRLFDIRTGHQLQVYYQQ  291 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg----~--i~i~d~~~~~~~~~~~~~  291 (388)
                      +.+++.+..+|..++|...........+..+...|..+ ++++++.+ +++..++    .  |.-.++..+.....+.. 
T Consensus       332 ~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~-  409 (470)
T d2bgra1         332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC-  409 (470)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST-
T ss_pred             CcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecc-
Confidence            44566777788776665544334555555555667766 34444444 4443332    1  33344554444443321 


Q ss_pred             cCCCCCCCeEEEEecCCCCEEEEEe---cCCcEEEEEcccceEEeec
Q 016522          292 HGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~  335 (388)
                      ....+...+..++|||||++++...   ..-.+.+|+..+++.+..+
T Consensus       410 ~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~l  456 (470)
T d2bgra1         410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (470)
T ss_dssp             TTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence            2223445689999999999877433   3346899999999988877

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=3.9e-10  Score=94.89  Aligned_cols=284  Identities=9%  Similarity=0.056  Sum_probs=154.4

Q ss_pred             EEEEeC--CCcEEEE--ECCCCCee--eEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe
Q 016522           82 IVSASQ--DGRLIVW--NALTSQKT--HAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML  154 (388)
Q Consensus        82 l~t~~~--dg~v~iw--d~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  154 (388)
                      |++|+.  .+.|..+  |.++++..  ..... ....+..|+|+|+++.|+++.. +.+..|.+....    ....... 
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~----~~~~~~~-   78 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT----EIVHEAS-   78 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT----EEEEEEE-
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC----CeEEEee-
Confidence            455542  4456554  44444332  12222 3344677999999999988765 567788776422    0111111 


Q ss_pred             cccccceEEEEEEeCCCceEEEe--eCCCeEEEEecCCC------------ceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          155 SGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITTG------------LRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      .........+.+++++...+++.  ...+.|..+.+...            .................+.++.|+| +++
T Consensus        79 ~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~  157 (365)
T d1jofa_          79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TET  157 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred             ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCC
Confidence            11122234456666654322222  22344544433211            1111000000122334578999999 666


Q ss_pred             EEEEeeC-CCceEEEECCCCCcce--EEEe--cccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeecc--
Q 016522          221 MFVSGSC-DSTARLWDTRVASRAV--RTFH--GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQH--  292 (388)
Q Consensus       221 ~l~~~~~-dg~i~i~d~~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~--  292 (388)
                      ++++++. ...|.+|+........  ....  ........++|+|+++++++.. .+++|.+|++.............  
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            6665543 4578888766442222  1111  2345678999999999886655 57889999987655332221100  


Q ss_pred             ------------CCCCCCCeEEEEecCCCCEEEEEec-C-----CcEEEEEcccceEEe---eccCCCCCcCCCeeEEEE
Q 016522          293 ------------GENEIPHVTSIAFSISGRLLFAGYS-N-----GDCYVWDTLLAKVVL---NLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       293 ------------~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~  351 (388)
                                  ..........+.++|+|++|+++.. +     +.|..|++.....+.   .+... ........++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~G~~p~~i~~  316 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-PTSGGHSNAVSP  316 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-SSCCTTCCCEEE
T ss_pred             cccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE-EcCCCCccEEEe
Confidence                        0011123567899999999988743 1     237777765422111   11000 123345678999


Q ss_pred             CC-CCCeEEEc-cCCCeEEEeccc
Q 016522          352 SA-DGSALCTG-SWDTNLKVSLHY  373 (388)
Q Consensus       352 ~~-~~~~l~s~-~~dg~v~iw~~~  373 (388)
                      +| +|++|+++ ..++.|.+|...
T Consensus       317 ~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         317 CPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCCeEEEEEEe
Confidence            98 88977665 568999999754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=2.6e-09  Score=86.18  Aligned_cols=239  Identities=10%  Similarity=0.134  Sum_probs=161.3

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC------CccEEEEEECCCC-CEEEE-eeCCCcEEEEeCCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP------CAWVMTCAFSPTG-QSVAC-GGLDSVCSIFNLNS  140 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~-~~~dg~i~vw~~~~  140 (388)
                      ....|+++++|+.+++-..++.|++||. +++.+..+...      ......+++..+. ..+++ .+.++.|.+++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            4689999999998888778889999995 46666655321      1134556655543 44443 34456777777543


Q ss_pred             CCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          141 PTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      .        ....+ .........+++.+++ .++++....+.+.+++.. ++.+..+..   ..+......+++.+ ++
T Consensus       103 ~--------~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~---~~~~~~~~~i~~d~-~g  168 (279)
T d1q7fa_         103 Q--------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVND-KQ  168 (279)
T ss_dssp             C--------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECS-SS
T ss_pred             c--------ceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cceeecccc---cccccccceeeecc-ce
Confidence            1        22222 2334556788888876 566666677788888864 455555432   34566778888887 77


Q ss_pred             cEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCC
Q 016522          220 RMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENE  296 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  296 (388)
                      +++++....+.|++||...  ..+..+.  +.......|++.++|+++++-.. ++.|.+|+ .+++.+..+....   .
T Consensus       169 ~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~---~  242 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV---K  242 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS---C
T ss_pred             eEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC---C
Confidence            8888888889999999763  4455542  23445789999999997777544 45699998 4577666654422   1


Q ss_pred             CCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522          297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  329 (388)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (388)
                      ......+++.|+|.++ +++.+..|++|.....
T Consensus       243 ~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             CCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence            2247889999999754 4557889999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.34  E-value=2.6e-09  Score=87.58  Aligned_cols=242  Identities=11%  Similarity=0.113  Sum_probs=150.9

Q ss_pred             eeEEEeCCCCCeEEEEeC-------CCcEEEEECCCCCeeeEeeeC----CccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522           70 VYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSIFNL  138 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~  138 (388)
                      .-.++|.|+|+++++...       +|+|..||..++.........    ......++|.++++.++++...+.+..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            456789999997776432       467889998877654433211    123678999999998888877777888887


Q ss_pred             CCCCCCCCCCceeEEeccc-ccceEEEEEEeCCCceEEEee---------------CCCeEEEEecCCCceEEEeecccc
Q 016522          139 NSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSS---------------GDQTCVLWDITTGLRTSVFGGEFQ  202 (388)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~---------------~dg~v~i~d~~~~~~~~~~~~~~~  202 (388)
                      +......    ......+. -...+.+++.++| .+.++-.               .+|.|..++.. ++.....     
T Consensus       100 ~g~~~~~----~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-----  168 (314)
T d1pjxa_         100 DGTFEEI----AKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-----  168 (314)
T ss_dssp             TSCEEEC----CSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-----
T ss_pred             CCcEEEE----EeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-----
Confidence            6532100    00000111 1135778899987 4555422               13445555543 2322222     


Q ss_pred             cCCccCeEEEEeeCCCC----cEEEEeeCCCceEEEECCCCCcce-----EEEec-ccCCeeEEEEccCCCEEEEeeCCC
Q 016522          203 SGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAV-----RTFHG-HEGDVNTVKFFPDGNRFGTGSDDG  272 (388)
Q Consensus       203 ~~~~~~i~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  272 (388)
                       ..-...+.++|+|...    .++++-+..+.|..||+.......     ..+.. .......+++..+|++.++....+
T Consensus       169 -~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence             1223456788987332    355666778889999876442221     11111 122356799999999888887889


Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE-EEEecCCcEEEEEccc
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLL  328 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~  328 (388)
                      .|.+||...+.....+....     ...++++|.|+++.| ++.+.+|.|+.+++..
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~-----~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPF-----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSS-----SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEeCCCCEEEEEEECCC-----CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            99999988776665554322     247899999999855 4455678888888653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.8e-09  Score=84.76  Aligned_cols=228  Identities=13%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             eeccccccCCeeEEEeCCCCCeEEEEeCCC---cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEE
Q 016522           60 CRTLQGHAGKVYSLDWTSERNRIVSASQDG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSI  135 (388)
Q Consensus        60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v  135 (388)
                      .+.+..+...+..-+|||||+.||-.....   .+.+.+...+.. ..+..+........|+|+|+.++.... ++...+
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            334445677788999999999998665433   466667665554 344556677889999999998887654 333333


Q ss_pred             EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522          136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                      +......      .................+++++...+++...+|.  |...++..+.....      ...........
T Consensus       110 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~------~~~~~~~~~~~  177 (269)
T d2hqsa1         110 YVMDLAS------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------TWEGSQNQDAD  177 (269)
T ss_dssp             EEEETTT------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------CCSSSEEEEEE
T ss_pred             eeccccc------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee------ecccccccccc
Confidence            3322211      0122222333444455677776556666666664  55556655543332      34556677788


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCceeeEeee
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~  290 (388)
                      |+|+...++......+...+|......... ....+........|+|||+.|+..+.   ...|.++++..+.... +..
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~  255 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPA  255 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCC
T ss_pred             cccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeC
Confidence            999444445555555666666554442333 44445666778899999999876554   3468899998765443 322


Q ss_pred             ccCCCCCCCeEEEEecC
Q 016522          291 QHGENEIPHVTSIAFSI  307 (388)
Q Consensus       291 ~~~~~~~~~i~~~~~~~  307 (388)
                      ..     ..+...+|+|
T Consensus       256 ~~-----g~~~~p~WSP  267 (269)
T d2hqsa1         256 TD-----GQVKFPAWSP  267 (269)
T ss_dssp             SS-----SEEEEEEECC
T ss_pred             CC-----CcEEeEEeCC
Confidence            21     2367788988

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.30  E-value=2.6e-08  Score=81.84  Aligned_cols=235  Identities=10%  Similarity=0.042  Sum_probs=151.9

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTD  143 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~  143 (388)
                      ..+-.++|.++|+++++-...+.|..|+..+++....+.........++++++|+++++...+    +.+...+..... 
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~-  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce-
Confidence            345789999999988887788999999988776666665566678999999999988775432    234444443322 


Q ss_pred             CCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522          144 KDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS  215 (388)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (388)
                            ......  .-......+++.++| ++.++...      .+.+..++...+......      ..-...+.++|+
T Consensus       119 ------~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~------~~~~~pnGia~s  185 (319)
T d2dg1a1         119 ------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------QNISVANGIALS  185 (319)
T ss_dssp             ------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------EEESSEEEEEEC
T ss_pred             ------eeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEe------eccceeeeeeec
Confidence                  111111  112346788899987 44444322      234666665443332222      222346789999


Q ss_pred             CCCCcEEEEeeCCCceEEEECCCCCcceEEEe-------cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      |++..++++-+..+.|..||+...........       ........+++.++|++.++....+.|.+||. .++.+..+
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            94444667777788999999875432222111       11123567999999998888888999999995 68877776


Q ss_pred             eeccC-CCCCCCeEEEEecCCCCEEEEEec
Q 016522          289 YQQHG-ENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       289 ~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      ..... ......+++++|.+++..+++...
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            54321 122335789999998876666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=2.4e-08  Score=82.02  Aligned_cols=237  Identities=11%  Similarity=0.029  Sum_probs=149.1

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC----CCeEEEE
Q 016522          111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----DQTCVLW  186 (388)
Q Consensus       111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~i~  186 (388)
                      .+..++|.++|++.++-..++.|..|+.+...       ..............+++.++| .++++...    .+.+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe-------EEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEE
Confidence            45688999999977777788888888877633       333344445567889999987 55554432    3446666


Q ss_pred             ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC------CCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522          187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  260 (388)
Q Consensus       187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  260 (388)
                      +............   .........+++.+ ++++.++...      .+.+..++...  ..+..+...-...+.++|+|
T Consensus       113 ~~~~~~~~~~~~~---~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         113 TENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             CTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECT
T ss_pred             cCCCceeeeeccC---CCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeecc
Confidence            6665554444311   12234577888998 7777665432      12344454432  33444433344568899999


Q ss_pred             CCCEEE-EeeCCCcEEEEECCCCce-eeEee--eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc
Q 016522          261 DGNRFG-TGSDDGTCRLFDIRTGHQ-LQVYY--QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  336 (388)
Q Consensus       261 ~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (388)
                      +++.|+ +-+..+.|..|++..... .....  ...........-.++++++|++.++...++.|.+||. .++.+..+.
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            998664 445678999999864321 11110  0000111123567999999998888888999999995 677776664


Q ss_pred             CCC--CCcCCCeeEEEECCCCCeEEEcc
Q 016522          337 SLQ--NSHEGRITCLGLSADGSALCTGS  362 (388)
Q Consensus       337 ~~~--~~~~~~v~~~~~~~~~~~l~s~~  362 (388)
                      ...  ..+...+++++|.+++..+++..
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            221  13445688999999877676644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.1e-07  Score=78.53  Aligned_cols=303  Identities=10%  Similarity=0.036  Sum_probs=157.6

Q ss_pred             CCCCcccCCCCceeeecccc---ccCCeeEEEeCCCCCeEEEEe---------CCCcEEEEECCCCCeeeEee--eCCcc
Q 016522           46 GRAPVSFGPTDLVCCRTLQG---HAGKVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIK--LPCAW  111 (388)
Q Consensus        46 ~~~~~~~~~~~~~~~~~l~~---h~~~v~~~~~~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~--~~~~~  111 (388)
                      ++....+++...+....+..   ..-.+....||||+++++.+.         ..+.+.++|+.++.......  .....
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~  115 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK  115 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence            33455566665544322322   223677889999999887764         35678999998877543322  23344


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-----------------cceEEEEEEeCCCceE
Q 016522          112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-----------------GYVSCCQYVPDEDTHL  174 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~l  174 (388)
                      +....|||+|+.+|-.. ++.+.+.+...+..      ...+..+..                 +.-..+-|+|+|..++
T Consensus       116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~------~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cceeeeccCCceEEEEe-cceEEEEecCCCce------EEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            66688999999998875 56788887765431      111111111                 1124677999985443


Q ss_pred             EEeeCCCe---------------------------------EEEEecCCCceEEEeec-ccccCCccCeEEEEeeCCCCc
Q 016522          175 ITSSGDQT---------------------------------CVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       175 ~~~~~dg~---------------------------------v~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      +.--.+..                                 +.++|+.++........ ........-+..+.|.| +++
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~  267 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STK  267 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSE
T ss_pred             EEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCe
Confidence            33222332                                 33444443322211100 00011222367788987 666


Q ss_pred             EEEEeeC-C---CceEEEECCCCCcceEEEec-ccCCe----eEEEEccCCCEEEE---eeCCC--cEEEEECCC-----
Q 016522          221 MFVSGSC-D---STARLWDTRVASRAVRTFHG-HEGDV----NTVKFFPDGNRFGT---GSDDG--TCRLFDIRT-----  281 (388)
Q Consensus       221 ~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~~---~~~dg--~i~i~d~~~-----  281 (388)
                      +++.... +   ..+.++|..++ ........ ....|    ....|+|+|+.++.   .-.+|  .+..+++..     
T Consensus       268 ~~~~~~nR~q~~~~i~~~d~~tg-~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~  346 (465)
T d1xfda1         268 VAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS  346 (465)
T ss_dssp             EEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred             EEEEEEccccccceEEEEcCCCC-cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccC
Confidence            6555332 2   25788888876 33333332 22222    34678899885432   22333  344443321     


Q ss_pred             -CceeeEeeeccCCCCCCCeEEE-EecCCCCEEE-EEecCC--cEEEEE--cccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522          282 -GHQLQVYYQQHGENEIPHVTSI-AFSISGRLLF-AGYSNG--DCYVWD--TLLAKVVLNLGSLQNSHEGRITCLGLSAD  354 (388)
Q Consensus       282 -~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-~~~~dg--~i~i~d--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  354 (388)
                       +.....+..     ..-.|..+ .|+++++.|+ ++..++  .-++|.  +..+.....+.. ..........+.|||+
T Consensus       347 ~~~~~~~LT~-----G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~-~~~~~~~~~~~~~S~~  420 (465)
T d1xfda1         347 SNDNIQSITS-----GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC-DLVENCTYFSASFSHS  420 (465)
T ss_dssp             SSCCCCBSCC-----SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST-TSSSSCCCCEEEECTT
T ss_pred             CCceeEEecc-----CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeecc-ccCCCCCEEEEEECCC
Confidence             111222211     11124554 6888877554 444332  334444  433332222210 0123445678999999


Q ss_pred             CCeEEEccC
Q 016522          355 GSALCTGSW  363 (388)
Q Consensus       355 ~~~l~s~~~  363 (388)
                      +++++....
T Consensus       421 ~~y~v~~~s  429 (465)
T d1xfda1         421 MDFFLLKCE  429 (465)
T ss_dssp             SSEEEEECC
T ss_pred             CCEEEEEee
Confidence            999885443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-07  Score=81.60  Aligned_cols=286  Identities=14%  Similarity=0.101  Sum_probs=155.8

Q ss_pred             EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEECCCCCEEEEee---------CCCcEEEEeCCCC
Q 016522           74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSPTGQSVACGG---------LDSVCSIFNLNSP  141 (388)
Q Consensus        74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---------~dg~i~vw~~~~~  141 (388)
                      .|.+++.++.. ..+|.|.+||+.+++....+...   ...+....||||+++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47788766543 55788999999888764444332   23567788999999988764         3567899999875


Q ss_pred             CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc-------------cCCccC
Q 016522          142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-------------SGHTAD  208 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-------------~~~~~~  208 (388)
                      ...     ...........+....|+|+|.. ++-.. ++.|.+.+..++...........             ......
T Consensus       102 ~~~-----~l~~~~~~~~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1         102 DPQ-----SLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             CCE-----ECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             cee-----eccCccCCccccceeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            411     11112223344556789999865 44433 56788888877765554421000             000111


Q ss_pred             eEEEEeeCCCCcEEEEee-CCCce---------------------------------EEEECCCCCcceEEEe-----cc
Q 016522          209 VLSVSISGSNSRMFVSGS-CDSTA---------------------------------RLWDTRVASRAVRTFH-----GH  249 (388)
Q Consensus       209 i~~~~~~~~~~~~l~~~~-~dg~i---------------------------------~i~d~~~~~~~~~~~~-----~~  249 (388)
                      -.++-|+| +++.|+... .+..+                                 .++|+...........     ..
T Consensus       175 ~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~  253 (465)
T d1xfda1         175 HIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (465)
T ss_dssp             SEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             cceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc
Confidence            24677999 666666643 23333                                 3334332211111100     11


Q ss_pred             cCCeeEEEEccCCCEEEEeeC-C---CcEEEEECCCCceeeEeeeccCCCCC-CCeEEEEecCCCCEEE---EEecCC--
Q 016522          250 EGDVNTVKFFPDGNRFGTGSD-D---GTCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLF---AGYSNG--  319 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~---~~~~dg--  319 (388)
                      ...+..+.|+|++++++.... +   ..+.++|..+++......... .... ..-....|+|+|+.++   ..-.+|  
T Consensus       254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceEeccCCceeEccCCCeeEEEEeeeecccC
Confidence            123677899999886665432 2   258889999987765543322 1110 0123457899998432   222333  


Q ss_pred             cEEEEEcc------cceEEeeccCCCCCcCCCeeEE-EECCCCCeEE-EccCC--CeEEEeccc
Q 016522          320 DCYVWDTL------LAKVVLNLGSLQNSHEGRITCL-GLSADGSALC-TGSWD--TNLKVSLHY  373 (388)
Q Consensus       320 ~i~i~d~~------~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-s~~~d--g~v~iw~~~  373 (388)
                      .++.+++.      .++.+..+    ....-.|..+ +|+++++.|. ++..+  +.-.+|...
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~L----T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ceEEEEeccccccCCCceeEEe----ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence            34444332      22222233    2233445554 6887766553 44333  344455543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.95  E-value=3.5e-06  Score=67.86  Aligned_cols=224  Identities=14%  Similarity=0.131  Sum_probs=139.2

Q ss_pred             EEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522          114 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       114 ~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      +..|++.. .+..+=-..+.|.-||..++.        ...+ .....+.++++.+++ .+ +.++.+ .+..+|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~--------~~~~-~~~~~~~~i~~~~dg-~l-~va~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR--------KTVH-ALPFMGSALAKISDS-KQ-LIASDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EEEE-ECSSCEEEEEEEETT-EE-EEEETT-EEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe--------EEEE-ECCCCcEEEEEecCC-CE-EEEEeC-ccEEeecccce
Confidence            44577644 444444456788888887743        1122 234567888998876 44 444555 48899999887


Q ss_pred             eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC----CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE-E
Q 016522          193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-T  267 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~  267 (388)
                      ........ .......++.+.+.| ++++.++...    .+.-.+|.+..+ ...... ..-...+.++|+++++.++ +
T Consensus        90 ~~~l~~~~-~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g-~~~~~~-~~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          90 LTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKG-KVTKLF-ADISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETT-EEEEEE-EEESSEEEEEECTTSCEEEEE
T ss_pred             eeEEeeee-cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCC-cEEEEe-eccCCcceeeecCCCceEEEe
Confidence            65544211 122234578888998 6776665432    234456665544 333333 3344568899999998665 4


Q ss_pred             eeCCCcEEEEECCCCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          268 GSDDGTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       268 ~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                      -+..+.|..|++.....     ...+..  ..........++++.+|++.++....+.|..||. .++.+..+.    -.
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~--~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~----lP  238 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFID--STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE----VP  238 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEE--CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE----CS
T ss_pred             ecccceeeEeeecccccccccceEEEec--cCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec----CC
Confidence            45677898888753211     111111  1122334788999999998887777889999995 677777773    33


Q ss_pred             CCCeeEEEEC-CCCCeEEE
Q 016522          343 EGRITCLGLS-ADGSALCT  360 (388)
Q Consensus       343 ~~~v~~~~~~-~~~~~l~s  360 (388)
                      ...+++++|- +|.+.|+.
T Consensus       239 ~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEE
T ss_pred             CCceEEEEEeCCCCCEEEE
Confidence            4568999995 56665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=6.1e-06  Score=66.40  Aligned_cols=223  Identities=13%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             EEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           72 SLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        72 ~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      +..|.+.. .++.+--..+.|.-||..+++.. .+.. ...+.++++.++|.++++. .+ .+.++|..+++     ...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~-----~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-----LTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-----EEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEEE-eC-ccEEeecccce-----eeE
Confidence            45688744 45555556789999998877543 3333 3458899999998877654 44 58889988754     111


Q ss_pred             eEEec--ccccceEEEEEEeCCCceEEEeeC----CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522          151 SRMLS--GHKGYVSCCQYVPDEDTHLITSSG----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  224 (388)
Q Consensus       151 ~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  224 (388)
                      .....  .....++++.+.|+| ++.++...    .+.-.+|.+..++.....      ..-...+.++|++++..++++
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~------~~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLF------ADISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEE------EEESSEEEEEECTTSCEEEEE
T ss_pred             EeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEe------eccCCcceeeecCCCceEEEe
Confidence            11111  122457888899987 44443321    234456666666554443      223346789999955567777


Q ss_pred             eeCCCceEEEECCCCCc-----c--eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522          225 GSCDSTARLWDTRVASR-----A--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI  297 (388)
Q Consensus       225 ~~~dg~i~i~d~~~~~~-----~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  297 (388)
                      .+..+.|..|++.....     .  .....+..+....+++..+|++.++.-..+.|..||. +++.+..+.....    
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~----  240 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK----  240 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS----
T ss_pred             ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC----
Confidence            77788999998753211     1  1122233455788999999998887777889999995 6788777755332    


Q ss_pred             CCeEEEEec-CCCCEEEEEe
Q 016522          298 PHVTSIAFS-ISGRLLFAGY  316 (388)
Q Consensus       298 ~~i~~~~~~-~~~~~l~~~~  316 (388)
                       .+++++|- ++.+.|++.+
T Consensus       241 -~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         241 -QTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -BEEEEEEESTTSCEEEEEE
T ss_pred             -ceEEEEEeCCCCCEEEEEE
Confidence             38999995 6766665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.70  E-value=6.5e-06  Score=65.63  Aligned_cols=238  Identities=11%  Similarity=0.066  Sum_probs=125.6

Q ss_pred             EeCCC--CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-C-----CcEEEEeCCCCCCCC
Q 016522           74 DWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D-----SVCSIFNLNSPTDKD  145 (388)
Q Consensus        74 ~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~vw~~~~~~~~~  145 (388)
                      ..+|+  |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.|+.... +     ..|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  98888665 467888899887764 55666677899999999999986542 2     236677766644110


Q ss_pred             CCCceeEEecccccceEEEEEEeCCCceEEEeeC-----CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522          146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      -.. ................|+|++..++++...     ...+...+...+.....        .........+.+ +..
T Consensus        83 lt~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~  152 (281)
T d1k32a2          83 ITY-FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--------NLGPATHILFAD-GRR  152 (281)
T ss_dssp             CCC-CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--------CSCSCSEEEEET-TEE
T ss_pred             eee-cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--------cCCccceeeecC-CCe
Confidence            000 000111222345678899998544433222     22355556555443222        122222333332 444


Q ss_pred             EEEEeeCCCc-----------eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC--CCcEEEEECCCCceeeE
Q 016522          221 MFVSGSCDST-----------ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTGHQLQV  287 (388)
Q Consensus       221 ~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  287 (388)
                      .++.......           ........  .................++++. .+.....  ...|.++|+.++.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~l  229 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNS--GAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKH  229 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEET--TEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccc--cceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEe
Confidence            5444333221           11111111  1122222233334445555442 2233333  23577888876654432


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (388)
                      . ... .     .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus       230 t-~~~-~-----~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         230 T-SFT-D-----YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             C-CCC-S-----SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             e-cCC-C-----cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            2 111 1     2234689999987764 568899999988876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=5.1e-05  Score=59.56  Aligned_cols=249  Identities=9%  Similarity=0.041  Sum_probs=150.3

Q ss_pred             CeEEEEeCCCcEEEEECCCCCe-----eeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEE
Q 016522           80 NRIVSASQDGRLIVWNALTSQK-----THAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRM  153 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~  153 (388)
                      .+|+-+.. +.|+-.+++....     ...+..+...+..++|.+..+.++... .++.|...+++...       ....
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-------~~~v   73 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI   73 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-------cEEE
Confidence            34444433 4676666644321     222344445678899998877777654 46778888887643       2222


Q ss_pred             ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      .......+.++++...++++..+-...+.|.+.++.........     ......+..++++|..+.++.+-...+..+|
T Consensus        74 ~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I  148 (263)
T d1npea_          74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI  148 (263)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred             EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-----cccccCCcEEEEecccCcEEEeecCCCCcEE
Confidence            33333567888988766666667777889999998876554443     2334568899999966666655433333344


Q ss_pred             E--ECCCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522          234 W--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  310 (388)
Q Consensus       234 ~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (388)
                      +  ++... .........-....++++++.++.|+.. ...+.|...++......... ....     ....+++.  +.
T Consensus       149 ~r~~~dG~-~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~-~~~~-----~P~~lav~--~~  219 (263)
T d1npea_         149 ETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQ-----YPFAVTSY--GK  219 (263)
T ss_dssp             EEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECCC-----SEEEEEEE--TT
T ss_pred             EEecCCCC-CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE-CCCC-----CcEEEEEE--CC
Confidence            4  55433 2222233333456899999877777555 46678999998754433332 2111     24577775  44


Q ss_pred             EEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522          311 LLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  353 (388)
Q Consensus       311 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  353 (388)
                      .|+... ..+.|...|..+++....+.   .........++..+
T Consensus       220 ~lYwtd~~~~~I~~~~~~~g~~~~~~~---~~~~~~~~gi~v~~  260 (263)
T d1npea_         220 NLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCCccceEEC---CCCCCCcceEEEeC
Confidence            555554 56789999998888776653   22333445555544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.48  E-value=0.00013  Score=60.90  Aligned_cols=294  Identities=10%  Similarity=0.064  Sum_probs=148.1

Q ss_pred             eeEEEeCCCCCeEEEEeCCC-----------cEEEEECCCCCeeeE--eee-CCccEEEEEECCCCCEEEEeeCC-CcEE
Q 016522           70 VYSLDWTSERNRIVSASQDG-----------RLIVWNALTSQKTHA--IKL-PCAWVMTCAFSPTGQSVACGGLD-SVCS  134 (388)
Q Consensus        70 v~~~~~~~~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~  134 (388)
                      +.......+|+.++.|+.+.           .+.+||..++.-...  ... +.......++.++|++++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34444556888888887431           377899988764322  221 22223456788999999998765 5899


Q ss_pred             EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------CeEEEEecCCCceEEEeecccc----cC
Q 016522          135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQ----SG  204 (388)
Q Consensus       135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~----~~  204 (388)
                      +||..+..-.     ....+... ..-...+..+++ .+++.|+.+      ..+.+||+.+.+....-.....    ..
T Consensus       102 ~yd~~~~~w~-----~~~~~~~~-r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~  174 (387)
T d1k3ia3         102 LYDSSSDSWI-----PGPDMQVA-RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  174 (387)
T ss_dssp             EEEGGGTEEE-----ECCCCSSC-CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             EecCccCccc-----cccccccc-ccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCccccccccc
Confidence            9998874311     11111111 112345566666 566666542      3589999988764432110000    00


Q ss_pred             Ccc----CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ec----ccC--CeeEEEEc-cCCCEEEEeeCC
Q 016522          205 HTA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HG----HEG--DVNTVKFF-PDGNRFGTGSDD  271 (388)
Q Consensus       205 ~~~----~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~----~~~--~i~~~~~~-~~~~~l~~~~~d  271 (388)
                      +..    .-....+...++..+..+...+.+.++|..+. ......  ..    +..  .-.++.+. .+++.++.|+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~  253 (387)
T d1k3ia3         175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  253 (387)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC-cEeeccccccCcccCcccccccEEEeeccCCceEEEEecc
Confidence            000    00111122225666777777777777776654 111110  00    000  11222232 356677777642


Q ss_pred             C--------cEEEEECCCCceee-EeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----------cEEEEEcccceE
Q 016522          272 G--------TCRLFDIRTGHQLQ-VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----------DCYVWDTLLAKV  331 (388)
Q Consensus       272 g--------~i~i~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~  331 (388)
                      .        ...+.++....... .............-.+....++|+++++|+.+.           .+.+||..+.+-
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W  333 (387)
T d1k3ia3         254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF  333 (387)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence            1        23333333221111 111111111111123455568999988887531           478999877653


Q ss_pred             Eee--ccCCCCCcCCCeeEEEECCCCCeEEEccC--------CCeEEEecccee
Q 016522          332 VLN--LGSLQNSHEGRITCLGLSADGSALCTGSW--------DTNLKVSLHYYI  375 (388)
Q Consensus       332 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------dg~v~iw~~~~~  375 (388)
                      ...  +......|    ....+.+||++++.|+.        +-.+.+|++.|.
T Consensus       334 ~~~~~~~~~R~~H----s~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl  383 (387)
T d1k3ia3         334 YKQNPNSIVRVYH----SISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL  383 (387)
T ss_dssp             EECCCCSSCCCTT----EEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred             EECCCCCCcccce----EEEEECCCCEEEEEeCCCcCCCCcccceEEEEcchhc
Confidence            221  11111122    22345789999999883        234667766553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=0.00016  Score=56.83  Aligned_cols=237  Identities=11%  Similarity=-0.019  Sum_probs=140.4

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG  159 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
                      +|+.+.. ..|+-.++.+.+....+. ....+.+++|++..+.++-.. .++.|.-.+++.....   ............
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~---~~~~~~~~~~~~   77 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQ   77 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC---cceEEEEeCCCC
Confidence            3444443 358888887655444333 445678999999887777664 4566776666542210   012222333335


Q ss_pred             ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCC
Q 016522          160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRV  238 (388)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  238 (388)
                      .+..+++.+.++++..+-...+.|.+.++.........     .........++++|..+.++.+.. ..+.|.-.++..
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~-----~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE-----cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            56778888777677777777889999999877655544     344566889999996666665532 334566666654


Q ss_pred             CCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-e
Q 016522          239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-Y  316 (388)
Q Consensus       239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  316 (388)
                      . .........-.....+++++.++.|+.+ ...+.|...++............   ........+++.  +.+|+.. .
T Consensus       153 s-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~---~~~~~p~~lav~--~~~ly~td~  226 (266)
T d1ijqa1         153 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---KRLAHPFSLAVF--EDKVFWTDI  226 (266)
T ss_dssp             C-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT---TTTSSEEEEEEE--TTEEEEEET
T ss_pred             C-ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC---CcccccEEEEEE--CCEEEEEEC
Confidence            3 2222233333567899999877766655 55678999998654433332221   112234566665  3444444 3


Q ss_pred             cCCcEEEEEcccceEEe
Q 016522          317 SNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       317 ~dg~i~i~d~~~~~~~~  333 (388)
                      .++.|+..+..++....
T Consensus       227 ~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         227 INEAIFSANRLTGSDVN  243 (266)
T ss_dssp             TTTEEEEEETTTCCCCE
T ss_pred             CCCeEEEEECCCCcceE
Confidence            55677777766654433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=0.00018  Score=56.27  Aligned_cols=213  Identities=8%  Similarity=0.001  Sum_probs=134.6

Q ss_pred             cccccCCeeEEEeCCCCCeEEEE-eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCC
Q 016522           63 LQGHAGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNS  140 (388)
Q Consensus        63 l~~h~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~  140 (388)
                      +..+...+.+++|.+..+.|.-+ ..++.|+..++........+......+..+++..-+..|+.+ ...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33445568899999877766654 456788888887665555454444568899998766666544 5567999999876


Q ss_pred             CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522          141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN  218 (388)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (388)
                      ..       ..............+++.|..+.++.+-..  .+.|..-++.........     ...-.....+++.+.+
T Consensus       111 ~~-------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~-----~~~~~~P~glaiD~~~  178 (263)
T d1npea_         111 TQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTFDAFS  178 (263)
T ss_dssp             CS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEEEEETTT
T ss_pred             ce-------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee-----eecccccceEEEeecC
Confidence            33       122223334567889999986555544332  234555566554443333     2334567899999856


Q ss_pred             CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522          219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ  290 (388)
Q Consensus       219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  290 (388)
                      +.++.+-...+.|...|+... .....+.+.. ...++++. ++.+..+-...+.|...|..+++....+..
T Consensus       179 ~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         179 SQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cEEEEEeCCCCEEEEEECCCC-CeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            656666566788999998754 2222333322 34577775 344444444678899999988887766543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.37  E-value=7.9e-05  Score=61.13  Aligned_cols=264  Identities=11%  Similarity=0.053  Sum_probs=149.5

Q ss_pred             EEEEeCCCcEEEEECCCCCeeeEeeeCC---------------------------------------ccE--EEEEECC-
Q 016522           82 IVSASQDGRLIVWNALTSQKTHAIKLPC---------------------------------------AWV--MTCAFSP-  119 (388)
Q Consensus        82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~v--~~~~~~~-  119 (388)
                      +.+|+..|.|+|+-+.+++.+..+....                                       +..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5688889999999988888776664321                                       000  1333322 


Q ss_pred             --CCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCC-CceEEEeeCC--------------
Q 016522          120 --TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDE-DTHLITSSGD--------------  180 (388)
Q Consensus       120 --~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~d--------------  180 (388)
                        ||+++++.. .+++|.+.|++..+       ..+... .....+..+...++. ..+++.++.+              
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fk-------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccceeEEEEEcCCCceEEEEECccee-------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence              688888765 57899999998744       322222 122334445554332 2345554442              


Q ss_pred             ----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----------------------------
Q 016522          181 ----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------------  228 (388)
Q Consensus       181 ----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------------------  228 (388)
                          +.+.++|..+.+......      -......+.+++ +++++++.+.+                            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~------V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVL------VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEE------ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             hhcceEEEEEecCCceEEEEee------eCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                236678888887766653      223456778888 66676665533                            


Q ss_pred             ----------CceEEEECCCC--CcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCcee--------eE
Q 016522          229 ----------STARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL--------QV  287 (388)
Q Consensus       229 ----------g~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--------~~  287 (388)
                                +.+.+.|.+..  ...+..+. -......+..+|||+++++++ .+.++.++|++.-...        ..
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                      12334444321  11222222 233457789999999987765 6889999998642211        11


Q ss_pred             eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----------eEEeeccC-CCCCcCCCeeEEEECCCCC
Q 016522          288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLGS-LQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~-~~~~~~~~v~~~~~~~~~~  356 (388)
                      ....  ....-....-+|+..|.-..+-.-|..|.-|++...          ..+..+.. ...+|......-...|+|+
T Consensus       321 ~~~e--~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk  398 (459)
T d1fwxa2         321 VVAE--PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND  398 (459)
T ss_dssp             EEEC--CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred             EEee--cccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCC
Confidence            1110  112223567789888865555567999999998533          33333311 1122321111112457888


Q ss_pred             eEEEcc
Q 016522          357 ALCTGS  362 (388)
Q Consensus       357 ~l~s~~  362 (388)
                      +|++..
T Consensus       399 ~l~~~n  404 (459)
T d1fwxa2         399 WLVCLS  404 (459)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=9.3e-05  Score=58.58  Aligned_cols=229  Identities=11%  Similarity=0.066  Sum_probs=115.7

Q ss_pred             ECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecC
Q 016522          117 FSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDIT  189 (388)
Q Consensus       117 ~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~  189 (388)
                      .+|+  |+.++..+ +|.|.+.|+.++.        ...+..+.+.+...+|+|||..+.++...+     ..|.+++..
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~--------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCC--------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            5677  88887764 4578888988754        345566677788899999986554444322     247788887


Q ss_pred             CCceEEEeecc-cccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522          190 TGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  262 (388)
Q Consensus       190 ~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (388)
                      ++......... .............|+| +++.++.....      ..+...+....  ...  ..+........+.+.+
T Consensus        77 ~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~  151 (281)
T d1k32a2          77 NGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGI--NFV--PLNLGPATHILFADGR  151 (281)
T ss_dssp             TTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGT--EEE--ECCSCSCSEEEEETTE
T ss_pred             CCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCc--eeE--EecCCccceeeecCCC
Confidence            77655432110 0012233456788998 66666653322      12334444322  111  1122333333333333


Q ss_pred             CEEEEeeCCC-----------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC--CcEEEEEcccc
Q 016522          263 NRFGTGSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLA  329 (388)
Q Consensus       263 ~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~  329 (388)
                      ..++....+.           ................ ..     ........++++. .+.....+  ..|+++|+.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DM-----STHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CC-----SSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSC
T ss_pred             eEEEeeccccceeeeeccCCcceeeeeccccceeecc-CC-----ccccceeeeeccc-cceecccccccceEEEeCCCC
Confidence            3333332221           1111111111111111 11     1123444455442 22333233  35788888766


Q ss_pred             eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +.....    ......  ...|+|||+.|+.. .++.|.+++..
T Consensus       225 ~~~~lt----~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         225 DLRKHT----SFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             SCEECC----CCCSSC--EEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             ceEEee----cCCCcc--cccCcCCCCEEEEE-eCCEEEEEECC
Confidence            544322    122222  34689999988764 46777777654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=0.00038  Score=53.96  Aligned_cols=258  Identities=9%  Similarity=0.124  Sum_probs=156.6

Q ss_pred             CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522           88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV  167 (388)
Q Consensus        88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (388)
                      ...|.|.|+.++......+...   -+.-.+|..+.|+.-+ ...+.++|+++..       ..+... ...+|.--.|.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~A---dsAIMhP~~~IiALra-g~~LQiFnletK~-------klks~~-~~e~VvfWkWi  111 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHT-MTDDVTFWKWI  111 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTE-------EEEEEE-CSSCCCEEEES
T ss_pred             CceEEEEECCCCCcceecccch---hhhhcCCCCcEEEEec-CCeEEEEehhHhh-------hhceEE-cCCCcEEEEec
Confidence            3478899998766544333222   2344678888888766 5689999999743       222222 23466666777


Q ss_pred             eCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCCC
Q 016522          168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRVA  239 (388)
Q Consensus       168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~  239 (388)
                      .+  +.|+..+. ..|+-|+++.. .+...+...... ....|..-..++ +.++++..+       -.|.+.+|.... 
T Consensus       112 s~--~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L-~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er-  185 (327)
T d1utca2         112 SL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-  185 (327)
T ss_dssp             SS--SEEEEECS-SEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT-
T ss_pred             CC--CEEEEEcC-CceEEEcccCCCCchhhhhhcccc-cCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEecc-
Confidence            64  34554443 56999999543 455555332222 245677777777 555555432       246889999873 


Q ss_pred             CcceEEEecccCCeeEEEEccC--C-CEEEEe---eCCCcEEEEECCCCc---ee---eEeee-ccCCCCCCCeEEEEec
Q 016522          240 SRAVRTFHGHEGDVNTVKFFPD--G-NRFGTG---SDDGTCRLFDIRTGH---QL---QVYYQ-QHGENEIPHVTSIAFS  306 (388)
Q Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~---~~dg~i~i~d~~~~~---~~---~~~~~-~~~~~~~~~i~~~~~~  306 (388)
                       +.-+.+++|...-..+.+..+  . ++++.+   ...+++.|.++....   ..   +.... ...........++..+
T Consensus       186 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs  264 (327)
T d1utca2         186 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  264 (327)
T ss_dssp             -TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred             -CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence             466777887665544444321  1 233322   233689999886532   11   00000 1111223446788889


Q ss_pred             CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEE
Q 016522          307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  368 (388)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~  368 (388)
                      +.-..++.-+.-|.+++||+.++..+..-    +-....|...+-+.+..=++.-..+|.|.
T Consensus       265 ~kygiiyviTK~G~i~lyDleTgt~i~~n----RIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         265 EKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccCCEEEEEecCcEEEEEEcccccEEEEe----ecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            88889999999999999999999998776    34456666555554444455555677664

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.12  E-value=0.0021  Score=56.29  Aligned_cols=262  Identities=15%  Similarity=0.158  Sum_probs=144.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCc----cEEEEEECCCCCEEEEee------CCCcEEEEeCCCCCCCCCCCc
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMTCAFSPTGQSVACGG------LDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      ..++.++.||.+.-.|.++|+..........    .++.--.-.++ .++.+.      .+|.|+-+|..+++.      
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~------  188 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGEL------  188 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCE------
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcE------
Confidence            4677888899999999999998776653221    11110001133 344443      367899999888662      


Q ss_pred             eeEEecc-------------------------------------cccce-EEEEEEeCCCceEEEeeC------------
Q 016522          150 VSRMLSG-------------------------------------HKGYV-SCCQYVPDEDTHLITSSG------------  179 (388)
Q Consensus       150 ~~~~~~~-------------------------------------~~~~v-~~~~~~~~~~~~l~~~~~------------  179 (388)
                       ......                                     ..+.+ ...++.+.. .++..+..            
T Consensus       189 -~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~-g~~y~~tg~~~p~~~~~r~g  266 (571)
T d2ad6a1         189 -KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             -EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred             -EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc-CeeeeecccccCcccccccc
Confidence             111110                                     00111 123445543 23333222            


Q ss_pred             ----CCeEEEEecCCCceEEEeecccccCC----ccCe--EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc
Q 016522          180 ----DQTCVLWDITTGLRTSVFGGEFQSGH----TADV--LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (388)
Q Consensus       180 ----dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~i--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (388)
                          ...+...|+++++....+........    ....  ..+.........++.++.+|.+.++|..++ +++......
T Consensus       267 ~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG-~~i~~~~~~  345 (571)
T d2ad6a1         267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVD  345 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESS
T ss_pred             ccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC-cEeeeeccC
Confidence                35688899999998887743211000    1111  122221111235677888999999998877 333211100


Q ss_pred             -------------------------------------cCC--eeEEEEccCCCEEEEeeCC-------------------
Q 016522          250 -------------------------------------EGD--VNTVKFFPDGNRFGTGSDD-------------------  271 (388)
Q Consensus       250 -------------------------------------~~~--i~~~~~~~~~~~l~~~~~d-------------------  271 (388)
                                                           .+.  -...+++|+..+++....+                   
T Consensus       346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~  425 (571)
T d2ad6a1         346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence                                                 000  0125667766666554332                   


Q ss_pred             ------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe
Q 016522          272 ------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  333 (388)
Q Consensus       272 ------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (388)
                                        |.|.-+|+.+++........... ...     ..+..+.++++|+.||.++.+|.++++.+.
T Consensus       426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~-~~g-----~l~TagglVf~G~~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-WGG-----TLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-CSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCC-Ccc-----eeEecCCEEEEECCCCeEEEEECCCCcEEE
Confidence                              45777888888877766543221 111     122246688889999999999999999998


Q ss_pred             eccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522          334 NLGSLQNSHEGRITCLGLSADGS-ALCT  360 (388)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s  360 (388)
                      ++.........++   .|..||+ |+++
T Consensus       500 ~~~l~~~~~a~P~---ty~~dGkqYi~v  524 (571)
T d2ad6a1         500 NFKMPSGGIGSPM---TYSFKGKQYIGS  524 (571)
T ss_dssp             EEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             EEECCCCceecce---EEEECCEEEEEE
Confidence            8864333333444   3444675 5544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.09  E-value=0.002  Score=56.36  Aligned_cols=263  Identities=13%  Similarity=0.126  Sum_probs=145.5

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE-EEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCce
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      ..++.+..|+.|.-.|..+|+.+.......... ..+.-.|  .+..++.+..      .|.|.-+|..+++.       
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~-------  190 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-------  190 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-------
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceE-------
Confidence            467888889999999999999988776432110 0111111  1223344322      35688888877651       


Q ss_pred             eEEecc------------------------------cccce-EEEEEEeCCCceEEEee-------------------CC
Q 016522          151 SRMLSG------------------------------HKGYV-SCCQYVPDEDTHLITSS-------------------GD  180 (388)
Q Consensus       151 ~~~~~~------------------------------~~~~v-~~~~~~~~~~~~l~~~~-------------------~d  180 (388)
                      ...+..                              ....+ ..+++.+.. .++..+.                   ..
T Consensus       191 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~-~l~y~~tgn~~~~~~~~~~~~~g~n~~s  269 (560)
T d1kv9a2         191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYL  269 (560)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EeeeeeccccccCCccccccccccccccccccccccCCCCccccccccccc-CeeeecCCCCcccccccccccCCccccc
Confidence            111100                              01111 123444543 2332211                   13


Q ss_pred             CeEEEEecCCCceEEEeecccccC----Ccc--CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec-cc---
Q 016522          181 QTCVLWDITTGLRTSVFGGEFQSG----HTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HE---  250 (388)
Q Consensus       181 g~v~i~d~~~~~~~~~~~~~~~~~----~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---  250 (388)
                      ..|...|+++++....+.......    ...  ....+.........++.+..+|.+.++|..++ +++..... ..   
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG-~~i~~~~~~~~~~~  348 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWA  348 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCC-cccccccccccccc
Confidence            467888999999887774211000    011  11222222212346778889999999998877 33322110 00   


Q ss_pred             ------------------------------C--CeeEEEEccCCCEEEEeeC----------------------------
Q 016522          251 ------------------------------G--DVNTVKFFPDGNRFGTGSD----------------------------  270 (388)
Q Consensus       251 ------------------------------~--~i~~~~~~~~~~~l~~~~~----------------------------  270 (388)
                                                    +  .-...+++|+..+++....                            
T Consensus       349 ~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (560)
T d1kv9a2         349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (560)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccc
Confidence                                          0  0013556676666665432                            


Q ss_pred             --------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522          271 --------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  342 (388)
Q Consensus       271 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (388)
                              .|.|.-||+.+++...........      ..-.++-.+.++++|+.||.++.+|..+++.+.++......+
T Consensus       429 ~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~------~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~  502 (560)
T d1kv9a2         429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV  502 (560)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cCCCCcccccceEEEeCCCCeEeeeccCCCCC------CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcc
Confidence                    256788899999888776553221      111223356788899999999999999999998886443333


Q ss_pred             CCCeeEEEECCCCC-eEEE
Q 016522          343 EGRITCLGLSADGS-ALCT  360 (388)
Q Consensus       343 ~~~v~~~~~~~~~~-~l~s  360 (388)
                      ..+   +.+..+|+ ||++
T Consensus       503 ~~P---~ty~~dGkqyv~v  518 (560)
T d1kv9a2         503 AAP---MTFELAGRQYVAI  518 (560)
T ss_dssp             SCC---EEEEETTEEEEEE
T ss_pred             ccC---EEEEECCEEEEEE
Confidence            333   33445675 5544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.00  E-value=0.0031  Score=53.14  Aligned_cols=247  Identities=11%  Similarity=0.048  Sum_probs=131.3

Q ss_pred             ccCCeeEEEeCCCCCeEEEE-eCC----CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----------
Q 016522           66 HAGKVYSLDWTSERNRIVSA-SQD----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----------  130 (388)
Q Consensus        66 h~~~v~~~~~~~~~~~l~t~-~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  130 (388)
                      +.-.+..++++|++++++.+ +.+    ..++++|+.+++.+...- .......++|.++++.|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            33345677899999988743 223    379999999998764321 11223568899999988765432          


Q ss_pred             ------CcEEEEeCCCCCCCCCCCceeEEeccc--ccceEEEEEEeCCCceEEEee--CCCe--EEEEecCCCce-----
Q 016522          131 ------SVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSS--GDQT--CVLWDITTGLR-----  193 (388)
Q Consensus       131 ------g~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~--~dg~--v~i~d~~~~~~-----  193 (388)
                            ..|..+.+.++...     -...+...  ...+..+..++++..+++...  .+..  +.+.|+.....     
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~-----d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  276 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             cccCCcceEEEEECCCCccc-----cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccc
Confidence                  25777777664321     12222222  234555667777654443332  2333  44445433211     


Q ss_pred             ---EEEeecccccCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCc-ceEEEe-cccCCeeEEEEccCCCEE
Q 016522          194 ---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR-AVRTFH-GHEGDVNTVKFFPDGNRF  265 (388)
Q Consensus       194 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l  265 (388)
                         ....     ........-+...  ++.+++...   .++.|...++..+.. ....+- .+...+..-.+...+.+|
T Consensus       277 ~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         277 LKWVKLI-----DNFEGEYDYVTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             CCCEEEE-----CSSSSCEEEEEEE--TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cceeEee-----cccccceEEEecC--CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence               1111     2222233333222  334444433   246777777765532 223333 344445444444445566


Q ss_pred             EEee-CCC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec----CCcEEEEEcccce
Q 016522          266 GTGS-DDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAK  330 (388)
Q Consensus       266 ~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  330 (388)
                      +... .++  .|+++++.++.........     ...+..+...++...+....+    -.+++-+|+.+++
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~~~~-----~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEecCCC-----CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            6554 444  5889999887765543222     223555555566554443322    3578889988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.96  E-value=0.0046  Score=54.33  Aligned_cols=263  Identities=14%  Similarity=0.132  Sum_probs=146.1

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEE-EEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCce
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      .+++.++.|+.|.-.|..+|+.+..+........ .+.-.|  .+..++++..      .|.|+-+|..+++.       
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~-------  194 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ-------  194 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-------
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE-------
Confidence            3688899999999999999999887754321100 011111  1344555543      48899999988662       


Q ss_pred             eEEecc-------------------------------------ccc-ceEEEEEEeCCCceEEEeeC-------------
Q 016522          151 SRMLSG-------------------------------------HKG-YVSCCQYVPDEDTHLITSSG-------------  179 (388)
Q Consensus       151 ~~~~~~-------------------------------------~~~-~v~~~~~~~~~~~~l~~~~~-------------  179 (388)
                      .-.+..                                     ... .-..+++.+.. .++..+..             
T Consensus       195 ~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g~  273 (596)
T d1w6sa_         195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGD  273 (596)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCC-Ceeeccccccccccccccccc
Confidence            111110                                     001 11223444543 33333321             


Q ss_pred             ---CCeEEEEecCCCceEEEeecccccC----CccCeEEEEeeCCC---CcEEEEeeCCCceEEEECCCCCcceEEEecc
Q 016522          180 ---DQTCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSN---SRMFVSGSCDSTARLWDTRVASRAVRTFHGH  249 (388)
Q Consensus       180 ---dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  249 (388)
                         ...|...|+++++....+.......    ......-+.....+   ...++....+|.+.++|..++ +.+......
T Consensus       274 n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG-~~i~~~~~~  352 (596)
T d1w6sa_         274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLD  352 (596)
T ss_dssp             CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESS
T ss_pred             ccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCC-ceeeecccc
Confidence               3458889999999888774311000    01112222211112   246777888899999998877 333221100


Q ss_pred             c-------------C--------------------------CeeEEEEccCCCEEEEeeC--------------------
Q 016522          250 E-------------G--------------------------DVNTVKFFPDGNRFGTGSD--------------------  270 (388)
Q Consensus       250 ~-------------~--------------------------~i~~~~~~~~~~~l~~~~~--------------------  270 (388)
                      .             .                          .-...+++|+..+++....                    
T Consensus       353 ~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~  432 (596)
T d1w6sa_         353 DTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFV  432 (596)
T ss_dssp             TTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             ccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccc
Confidence            0             0                          0012355565555444321                    


Q ss_pred             -------------------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522          271 -------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  331 (388)
Q Consensus       271 -------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (388)
                                         -|.|.-||+.+++..........      ...-.++..|.++++|+.||.++.+|..+++.
T Consensus       433 g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~------~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCC------CccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                               14677788888887766543322      11112233567888899999999999999999


Q ss_pred             EeeccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522          332 VLNLGSLQNSHEGRITCLGLSADGS-ALCT  360 (388)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  360 (388)
                      +.++......+..+++   |..||+ |++.
T Consensus       507 LW~~~~~~~~~a~P~t---Y~~dGkQYvav  533 (596)
T d1w6sa_         507 LWKFKIPSGAIGYPMT---YTHKGTQYVAI  533 (596)
T ss_dssp             EEEEECSSCCCSCCEE---EEETTEEEEEE
T ss_pred             eeEEECCCCcccCCeE---EEECCEEEEEE
Confidence            9988654344445544   334665 4443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=0.0027  Score=49.14  Aligned_cols=203  Identities=12%  Similarity=0.138  Sum_probs=128.5

Q ss_pred             EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522           72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS  151 (388)
Q Consensus        72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  151 (388)
                      +.-.+|..+.||.=+ ..++.+||+++.+++..+...+. |.--.|-.+..+-++.  +..|+-|+++...      .+.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~~~L~lVT--~taVYHW~~~g~s------~P~  136 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT--DNAVYHWSMEGES------QPV  136 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESSSSEEEEEC--SSEEEEEESSSSC------CCE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecCCCEEEEEc--CCceEEEcccCCC------Cch
Confidence            344678888777665 45899999999999998887764 7677776555443332  4579999996532      134


Q ss_pred             EEecccc----cceEEEEEEeCCCceEEEe------eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC--CC
Q 016522          152 RMLSGHK----GYVSCCQYVPDEDTHLITS------SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NS  219 (388)
Q Consensus       152 ~~~~~~~----~~v~~~~~~~~~~~~l~~~------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  219 (388)
                      +.+..|.    ..|..-..+++.+-++++|      +-.|.+.+|..+.+.. ..+     .+|......+.+...  ..
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~i-----eGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-----EGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEE-----CCSEEEEEEECCTTCSSCE
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccc-----cceeeeeEEEEcCCCCCCc
Confidence            4444443    4566666666664444443      2246788999876543 333     566655555544321  11


Q ss_pred             cEEEEe---eCCCceEEEECCCCCc---ce--EEE---e---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522          220 RMFVSG---SCDSTARLWDTRVASR---AV--RTF---H---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  285 (388)
Q Consensus       220 ~~l~~~---~~dg~i~i~d~~~~~~---~~--~~~---~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  285 (388)
                      .+|+.+   ...+.+++.++.....   +.  +..   -   ...+-..++..++....++.-+.-|.|.+||+.++.++
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence            233332   2336889998876321   11  111   1   11334567888888889999999999999999999988


Q ss_pred             eEeee
Q 016522          286 QVYYQ  290 (388)
Q Consensus       286 ~~~~~  290 (388)
                      ..-..
T Consensus       291 ~~nRI  295 (327)
T d1utca2         291 YMNRI  295 (327)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            76544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.0032  Score=49.11  Aligned_cols=225  Identities=8%  Similarity=-0.013  Sum_probs=131.7

Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce----EEEeec
Q 016522          124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGG  199 (388)
Q Consensus       124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~  199 (388)
                      |+.+.. ..|+-.++++..       ..... .....+..++|.+..+.++.+-...+.|...++.....    ....  
T Consensus         4 Ll~s~~-~~I~~~~l~~~~-------~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~--   72 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSE-------YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--   72 (266)
T ss_dssp             EEEECB-SSEEEEETTSCC-------CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--
T ss_pred             EEEECC-CeEEEEECCCCc-------ceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE--
Confidence            444333 358888887643       22222 33456678999987655555555667777766653221    1112  


Q ss_pred             ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEEEE
Q 016522          200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF  277 (388)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~  277 (388)
                         ......+..+++.+..+++..+-...+.|.+.++... ...............++++|...+|+...  ..+.|.-.
T Consensus        73 ---~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          73 ---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             ---eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc-eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence               2333556788888767777777777889999998865 33344444456688999999665555443  34467777


Q ss_pred             ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      ++..... ..+...    .......+++++.++.|+.+ ...+.|...++...........  ........+|++. ++.
T Consensus       149 ~~dGs~~-~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~--~~~~~~p~~lav~-~~~  220 (266)
T d1ijqa1         149 GLNGVDI-YSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDK  220 (266)
T ss_dssp             ETTSCCE-EEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTE
T ss_pred             ccCCCce-eccccc----ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC--CCcccccEEEEEE-CCE
Confidence            7654433 333221    12246899999988877666 4467888888865432222210  2223345677776 344


Q ss_pred             eEEEccCCCeEEEec
Q 016522          357 ALCTGSWDTNLKVSL  371 (388)
Q Consensus       357 ~l~s~~~dg~v~iw~  371 (388)
                      +..+-..++.|...+
T Consensus       221 ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         221 VFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEE
Confidence            444444566665554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.74  E-value=0.012  Score=51.52  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522          273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  352 (388)
Q Consensus       273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  352 (388)
                      .+.-||+.+++.+.........      ..-..+-.|.++++|+.||.++.+|..+++.+.++......+..++   .|.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~---ty~  528 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS---TYM  528 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEE
T ss_pred             cEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCE---EEE
Confidence            5667777777777665443211      1112233677888999999999999999999988864433344443   344


Q ss_pred             CCCC-eEEE
Q 016522          353 ADGS-ALCT  360 (388)
Q Consensus       353 ~~~~-~l~s  360 (388)
                      .+|+ ||+.
T Consensus       529 ~~GkQYv~v  537 (573)
T d1kb0a2         529 VDGRQYVSV  537 (573)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            4676 4433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.71  E-value=0.0094  Score=51.94  Aligned_cols=276  Identities=15%  Similarity=0.119  Sum_probs=149.5

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------E-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL  148 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  148 (388)
                      ..|+.++.++.|.-.|..+|+.+-.+......          + ..++.  .+..++.+..++.+.-.|..+++      
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~------  138 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK------  138 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC------
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCc------
Confidence            36667778899999999999998876422110          0 00111  14567777888888888877755      


Q ss_pred             ceeEEecc--ccc--ceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccC--------------
Q 016522          149 PVSRMLSG--HKG--YVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG--------------  204 (388)
Q Consensus       149 ~~~~~~~~--~~~--~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~--------------  204 (388)
                       .......  +..  .++.--...+  ..++.+.      ..|.|.-+|.++++.+..+.......              
T Consensus       139 -~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  215 (560)
T d1kv9a2         139 -AIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (560)
T ss_dssp             -EEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             -EEeccCccCcccceeeeeeeeeec--CcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccc
Confidence             2222211  100  1111111111  2334332      24789999999999998885321000              


Q ss_pred             -----------CccCe-EEEEeeCCCCcEEEEeeC-------------------CCceEEEECCCCCcceEEEecccCCe
Q 016522          205 -----------HTADV-LSVSISGSNSRMFVSGSC-------------------DSTARLWDTRVASRAVRTFHGHEGDV  253 (388)
Q Consensus       205 -----------~~~~i-~~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~~~~i  253 (388)
                                 ....+ ..+++.+ ...++..+..                   ...|.-.|++++ +..-.++.....+
T Consensus       216 ~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG-~~~W~~Q~~~~D~  293 (560)
T d1kv9a2         216 TWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDS  293 (560)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCC
T ss_pred             cccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccceeeEEecCCcc-ceeEEEecccccc
Confidence                       01111 1244555 4444443221                   234566677766 3333332211111


Q ss_pred             ---------eEEEEccCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCC---------------------------
Q 016522          254 ---------NTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE---------------------------  294 (388)
Q Consensus       254 ---------~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------------------  294 (388)
                               .-+....++   ..++.++.+|.+.++|..+++.+.........                           
T Consensus       294 wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  373 (560)
T d1kv9a2         294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM  373 (560)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred             ccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceee
Confidence                     112222233   35777889999999999999887554321100                           


Q ss_pred             ----CCCCCeEEEEecCCCCEEEEEec------------------------------------CCcEEEEEcccceEEee
Q 016522          295 ----NEIPHVTSIAFSISGRLLFAGYS------------------------------------NGDCYVWDTLLAKVVLN  334 (388)
Q Consensus       295 ----~~~~~i~~~~~~~~~~~l~~~~~------------------------------------dg~i~i~d~~~~~~~~~  334 (388)
                          .....-...+++|+...+++...                                    .|.|.-||+.+++.+..
T Consensus       374 ~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~  453 (560)
T d1kv9a2         374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK  453 (560)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred             eeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeee
Confidence                00000124566777776665432                                    24678899999998887


Q ss_pred             ccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       335 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ...     ..+...=.+...+.++++|+.||.++.++..
T Consensus       454 ~~~-----~~~~~gg~l~TagglVF~G~~dg~l~A~Da~  487 (560)
T d1kv9a2         454 VPY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (560)
T ss_dssp             EEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccC-----CCCCCCceeEECCCEEEEECCCCcEEEEECC
Confidence            632     1222211223346688889999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.70  E-value=0.0092  Score=49.16  Aligned_cols=263  Identities=11%  Similarity=0.079  Sum_probs=131.8

Q ss_pred             ccCCCCceeee--cc-ccccCCeeEEEeCCCCCeEEEEeCC-CcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEE
Q 016522           51 SFGPTDLVCCR--TL-QGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVA  125 (388)
Q Consensus        51 ~~~~~~~~~~~--~l-~~h~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~  125 (388)
                      .|+|...+-..  .+ ..|.....+.++.+++.+++.|+.+ ..+.+||..+..-...-.... ..-...+..++|+.++
T Consensus        56 ~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v  135 (387)
T d1k3ia3          56 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT  135 (387)
T ss_dssp             EECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE
T ss_pred             EEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceee
Confidence            57776443221  11 2233334466788999998888755 589999987755432211111 1223566778999999


Q ss_pred             EeeCC------CcEEEEeCCCCCCCCC-CCc-eeEEeccccc-----ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522          126 CGGLD------SVCSIFNLNSPTDKDG-NLP-VSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL  192 (388)
Q Consensus       126 ~~~~d------g~i~vw~~~~~~~~~~-~~~-~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  192 (388)
                      .|+.+      ..+.+||..+..-... ... .......+..     .-..+...+++ ..++.++.++.+.++|..+..
T Consensus       136 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         136 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCE
T ss_pred             eccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCc
Confidence            98753      3688999887431000 000 0000000000     00111222333 567777777888888887765


Q ss_pred             eEEEeecccc---cCCccCeEEEEeeCCCCcEEEEeeCCC--------ceEEEECCCCCcceEEEec-----ccCCeeEE
Q 016522          193 RTSVFGGEFQ---SGHTADVLSVSISGSNSRMFVSGSCDS--------TARLWDTRVASRAVRTFHG-----HEGDVNTV  256 (388)
Q Consensus       193 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~-----~~~~i~~~  256 (388)
                      ..........   ......-.++.+...++++++.|+...        ...+.+.............     +...-.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~  294 (387)
T d1k3ia3         215 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS  294 (387)
T ss_dssp             EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE
T ss_pred             EeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccccccee
Confidence            4333211100   111112233444444667777776432        2333443322111111111     11122345


Q ss_pred             EEccCCCEEEEeeCCC-----------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522          257 KFFPDGNRFGTGSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  317 (388)
Q Consensus       257 ~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (388)
                      ...+++++++.|+.+.           .+.+||..+.+-...-.. ... ... =....+.+||++++.|+.
T Consensus       295 ~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~-~~~-R~~-Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         295 VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-SIV-RVY-HSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-SSC-CCT-TEEEEECTTSCEEEEECC
T ss_pred             eeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC-CCc-ccc-eEEEEECCCCEEEEEeCC
Confidence            6668999999988531           478899877643222111 001 000 123446789999988874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.69  E-value=0.013  Score=51.30  Aligned_cols=200  Identities=13%  Similarity=0.057  Sum_probs=108.5

Q ss_pred             CCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCc----------c-EEEEEECCC----CCEEEEeeCCCcEEEEeCCCC
Q 016522           78 ERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCA----------W-VMTCAFSPT----GQSVACGGLDSVCSIFNLNSP  141 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~----------~-v~~~~~~~~----~~~l~~~~~dg~i~vw~~~~~  141 (388)
                      +|..+++++.++.|...|. .+|+.+-.+.....          . -+.+++.++    +..++.++.|+.+.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4444445555677888886 57888877643211          0 123444332    346888889999998898886


Q ss_pred             CCCCCCCceeEEecc---cc-cceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccc---------
Q 016522          142 TDKDGNLPVSRMLSG---HK-GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQ---------  202 (388)
Q Consensus       142 ~~~~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~---------  202 (388)
                      +       ....+..   +. ..++.--..-+  ..++.+..      .|.|+-+|.++++.+..+.....         
T Consensus       142 ~-------~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~  212 (596)
T d1w6sa_         142 E-------TVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (596)
T ss_dssp             C-------EEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             c-------eeccccccccccccccccCCcEEC--CeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccc
Confidence            5       2222211   11 11111111112  23555532      48999999999999988642100         


Q ss_pred             ------------------------cCCccCeEEEEeeCCCCcEEEEeeCC----------------CceEEEECCCCCcc
Q 016522          203 ------------------------SGHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRA  242 (388)
Q Consensus       203 ------------------------~~~~~~i~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~  242 (388)
                                              ......-..+++.+ ...++..+..+                ..|.-.|++++ +.
T Consensus       213 ~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG-~~  290 (596)
T d1w6sa_         213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EA  290 (596)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CE
T ss_pred             cccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccccccccccccccccc-cc
Confidence                                    00011112345555 44444444322                34667788877 44


Q ss_pred             eEEEec--cc-------CCeeEEEE-ccCC---CEEEEeeCCCcEEEEECCCCceeeEe
Q 016522          243 VRTFHG--HE-------GDVNTVKF-FPDG---NRFGTGSDDGTCRLFDIRTGHQLQVY  288 (388)
Q Consensus       243 ~~~~~~--~~-------~~i~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  288 (388)
                      .-.++.  |.       ....-+.. ..++   +.++....+|.+.++|..+++.+...
T Consensus       291 ~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         291 KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            333332  21       11111221 1233   35777889999999999999877543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=0.014  Score=50.98  Aligned_cols=278  Identities=11%  Similarity=0.033  Sum_probs=147.8

Q ss_pred             CCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCc----cE-------EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522           78 ERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCA----WV-------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD  145 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  145 (388)
                      +|..+++.+.++.|...|. ++|+.+-++.....    ..       ..+++.  +..++.++.||.+.-.|.++++   
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~---  136 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGK---  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCC---
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhh---
Confidence            4433343334688988897 47998877643211    00       112222  3567778889988888888865   


Q ss_pred             CCCceeEEec--c--cccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeeccccc------------
Q 016522          146 GNLPVSRMLS--G--HKGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS------------  203 (388)
Q Consensus       146 ~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~------------  203 (388)
                          ......  .  ....++.--...+  ..++.+.      .+|.|.-+|..+++.+..+...-..            
T Consensus       137 ----~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~  210 (571)
T d2ad6a1         137 ----INWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             ----EEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             ----hhccccccccccccceeecCeEeC--CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccc
Confidence                221111  1  1111111111222  2344443      3788999999999998876421000            


Q ss_pred             --------------------CCccCe-EEEEeeCCCCcEEEEeeC----------------CCceEEEECCCCCcceEEE
Q 016522          204 --------------------GHTADV-LSVSISGSNSRMFVSGSC----------------DSTARLWDTRVASRAVRTF  246 (388)
Q Consensus       204 --------------------~~~~~i-~~~~~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~  246 (388)
                                          .....+ ...++.+ ...++..+..                ...+.-.|.+++ +.+-.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG-~~~W~~  288 (571)
T d2ad6a1         211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGY  288 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEE
T ss_pred             ccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCccccccccccccccceeeeeccch-hheecc
Confidence                                000111 2344555 4444444333                235666777777 444333


Q ss_pred             ecccC---------CeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCCC-------------------
Q 016522          247 HGHEG---------DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-------------------  295 (388)
Q Consensus       247 ~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------  295 (388)
                      +....         +........+++   .++.++.+|.+.++|..+++.+..........                   
T Consensus       289 q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  368 (571)
T d2ad6a1         289 QKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA  368 (571)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred             cccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccc
Confidence            32211         111122222443   46778899999999999998775432211000                   


Q ss_pred             ---------------CCCCeEEEEecCCCCEEEEEecC-------------------------------------CcEEE
Q 016522          296 ---------------EIPHVTSIAFSISGRLLFAGYSN-------------------------------------GDCYV  323 (388)
Q Consensus       296 ---------------~~~~i~~~~~~~~~~~l~~~~~d-------------------------------------g~i~i  323 (388)
                                     ....-...+++|+...+++...+                                     |.|.-
T Consensus       369 ~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~A  448 (571)
T d2ad6a1         369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA  448 (571)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred             cccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEE
Confidence                           00001125677777766654432                                     35777


Q ss_pred             EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522          324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~  373 (388)
                      +|+.+++.+.+.........+.+     ...+.++++|+.||.++-++..
T Consensus       449 iD~~TG~~~W~~~~~~~~~~g~l-----~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         449 FDLTTGKAKWTKWEKFAAWGGTL-----YTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             ECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEETT
T ss_pred             eccCCCceeeEcCCCCCCCccee-----EecCCEEEEECCCCeEEEEECC
Confidence            88888888776532111112222     2245578889999999988754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.55  E-value=0.0097  Score=52.02  Aligned_cols=107  Identities=13%  Similarity=0.027  Sum_probs=61.0

Q ss_pred             eEEEEeCCCcEEEEECCCCCeeeEeeeCCc----------cE-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522           81 RIVSASQDGRLIVWNALTSQKTHAIKLPCA----------WV-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP  149 (388)
Q Consensus        81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  149 (388)
                      .|+.++.++.|.-+|..+|+.+-.+.....          .+ ..+.+.  +..++.++.|+.+.-.|..+++       
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~-------  149 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGK-------  149 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCC-------
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccccc-------
Confidence            667778889999999999999877643210          00 111111  3356666777877777777655       


Q ss_pred             eeEEecc--c-ccce--EEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEee
Q 016522          150 VSRMLSG--H-KGYV--SCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       150 ~~~~~~~--~-~~~v--~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~  198 (388)
                      .......  + ...+  +.......  ..++.++      ..|.|..+|.++++.+..+.
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         150 EVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ceecccCccCCcceEEeecceEEEe--ccEEEeeccccccccceEEEEecCCccceeeee
Confidence            2211111  1 1111  11011111  2344443      25789999999999998874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.52  E-value=0.014  Score=46.97  Aligned_cols=180  Identities=11%  Similarity=0.044  Sum_probs=92.5

Q ss_pred             CCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEE--eCCCceEEEe---eCCCeEEEEecCCCceEEEeeccccc
Q 016522          130 DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYV--PDEDTHLITS---SGDQTCVLWDITTGLRTSVFGGEFQS  203 (388)
Q Consensus       130 dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~  203 (388)
                      .|.|.++|+.+.......+..... .....-....+...  +++..+|++.   ....+|.+|++...............
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            478888998764421111100000 00000112334432  3443345544   24567888887655433333323334


Q ss_pred             CCccCeEEEEeeCCCCcEEEEeeC---------------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          204 GHTADVLSVSISGSNSRMFVSGSC---------------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       204 ~~~~~i~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      ......+.+.+.. ++.+++|-..               -+...+|..+.. . .......-...+.|+++|++++|+++
T Consensus       147 ~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-~-~~~~~~~l~~pNGI~~s~d~~~lyVa  223 (340)
T d1v04a_         147 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-D-VRVVAEGFDFANGINISPDGKYVYIA  223 (340)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-C-EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-c-eEEEcCCCCccceeEECCCCCEEEEE
Confidence            4556678888887 6777777311               022334443332 2 22333334567899999999877655


Q ss_pred             -eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEE
Q 016522          269 -SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAG  315 (388)
Q Consensus       269 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~  315 (388)
                       +..+.|+.|++.............   -....-.+.+.+. |.+.+++
T Consensus       224 ~t~~~~i~~y~~~~~~~l~~~~~~~---l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         224 ELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEE
T ss_pred             eCCCCeEEEEEeCCCcccceEEEec---CCCCCCccEEecCCCEEEEEE
Confidence             467789999987654333322211   1123566777764 4444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.51  E-value=0.017  Score=47.28  Aligned_cols=187  Identities=9%  Similarity=-0.025  Sum_probs=115.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC-CCCcEEEEeeCCC------------------
Q 016522          169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDS------------------  229 (388)
Q Consensus       169 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg------------------  229 (388)
                      ||..+++.-..+++|.+.|+.+.+......    ......+..+...+ .+..+++.++...                  
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~----iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILE----IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEE----CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEe----cCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            665556677788999999999998766553    23444556555532 1556676665532                  


Q ss_pred             ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC---------------cE--------------------
Q 016522          230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---------------TC--------------------  274 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i--------------------  274 (388)
                      .+.++|..+. +...... -.+....+.++++|+++++.+.+.               .+                    
T Consensus       174 ~~t~ID~~tm-~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         174 VFTAVDADKW-EVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEETTTT-EEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEEecCCc-eEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            3567888766 3333332 234567899999999998876431               12                    


Q ss_pred             ---EEEECCCC---ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccce------------EEeec
Q 016522          275 ---RLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAK------------VVLNL  335 (388)
Q Consensus       275 ---~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~  335 (388)
                         .+-|.++.   ..+..+....      ....+.++|||+++++++ .+.++.|+|++.-.            ...+.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpK------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CCceeecccccCCcceeEEEecCC------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence               33333221   1111111111      145688999999887765 47899999986321            11111


Q ss_pred             cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522          336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                           ...-.....+|+..|.-..|---|..|.-|+.
T Consensus       326 -----elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         326 -----ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             -----BCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             -----ccCcCccccccCCCceEEEEeeccceEEEEec
Confidence                 12334566789988876666678999999986

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=0.034  Score=48.58  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522          272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  351 (388)
Q Consensus       272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  351 (388)
                      |.|.-+|+.+++..........      +..-..+..+.++++|+.||.++.+|..+++.+.++......+..+   +.|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p------~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty  536 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITW  536 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC------CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEE
Confidence            5688888888888877654332      1111233467788899999999999999999999886433334444   345


Q ss_pred             CCCCC-eEEE
Q 016522          352 SADGS-ALCT  360 (388)
Q Consensus       352 ~~~~~-~l~s  360 (388)
                      ..+|+ |++.
T Consensus       537 ~~~G~qYv~i  546 (582)
T d1flga_         537 EQDGEQYLGV  546 (582)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            56775 4443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.053  Score=42.19  Aligned_cols=217  Identities=15%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             cEEEEECCCCCeee--EeeeCCccEEEEEECCCCCEEEEeeC---------CCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522           90 RLIVWNALTSQKTH--AIKLPCAWVMTCAFSPTGQSVACGGL---------DSVCSIFNLNSPTDKDGNLPVSRMLSGHK  158 (388)
Q Consensus        90 ~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  158 (388)
                      .+.+||..+++-..  .++.+...-..+..  ++..++.|+.         -..+.+||..+..-.     ....+....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~-----~~~~~p~~r   92 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS-----PCAPMSVPR   92 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE-----ECCCCSSCC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccc-----cccccccee
Confidence            57899988765322  22222222222222  5666666653         135677887653311     000001001


Q ss_pred             cceEEEEEEeCCCceEEEeeCCCe-----EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----
Q 016522          159 GYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----  228 (388)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  228 (388)
                      ....+ +. .+ +.+++.++.++.     ...+|..+........    ......-.++...  +..+++.|+.+     
T Consensus        93 ~~~~~-~~-~~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~--~~~~~~~GG~~~~~~~  163 (288)
T d1zgka1          93 NRIGV-GV-ID-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP----MLTRRIGVGVAVL--NRLLYAVGGFDGTNRL  163 (288)
T ss_dssp             BTCEE-EE-ET-TEEEEECCEETTEECCCEEEEETTTTEEEECCC----CSSCCBSCEEEEE--TTEEEEECCBCSSCBC
T ss_pred             cceec-cc-cc-eeeEEecceecccccceeeeeccccCccccccc----cccccccceeeee--eecceEecCccccccc
Confidence            11111 11 23 345555544333     4456666654332211    1111111222233  44566666554     


Q ss_pred             CceEEEECCCCCcceEEEeccc--CCeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522          229 STARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVT  301 (388)
Q Consensus       229 g~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~  301 (388)
                      ..+..||....  .........  ....+.... ++.+++.|+.+     .....+|..+.+.........   ..... 
T Consensus       164 ~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~r~~~-  236 (288)
T d1zgka1         164 NSAECYYPERN--EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH---RRSAL-  236 (288)
T ss_dssp             CCEEEEETTTT--EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS---CCBSC-
T ss_pred             ceEEEeecccc--ccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccC---cccce-
Confidence            34677777644  111111111  111222222 45566666544     346777776654333211111   11111 


Q ss_pred             EEEecCCCCEEEEEecCC-----cEEEEEcccce
Q 016522          302 SIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (388)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (388)
                      +++. .++++++.|+.++     .+.+||+.+.+
T Consensus       237 ~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         237 GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2222 3677778777654     37899988644

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.066  Score=43.44  Aligned_cols=184  Identities=14%  Similarity=0.064  Sum_probs=97.6

Q ss_pred             eEEEEEEeCCCceEEEeeCCCeEEEEecCCC-------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522          161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  233 (388)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  233 (388)
                      ..-++.++.. .+++.|+.++ +.|..+..-       .....+..   ...-..|..++++. +  .+++. .++.+..
T Consensus        39 ~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~---~~~ip~v~~vafs~-d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          39 LQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW---EKEIPDVIFVCFHG-D--QVLVS-TRNALYS  109 (381)
T ss_dssp             CBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE---EEECTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred             cceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCccee---ccCCCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence            4457777764 4677777775 556553210       00000100   01112588888874 3  34443 4567888


Q ss_pred             EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522          234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  313 (388)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  313 (388)
                      ++.... ........-..++..+.++|.  .++....+|.+.++++..++..................+++|++.|..++
T Consensus       110 ~~~~~l-~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         110 LDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             EEeecc-ccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            887765 333344444567788888765  56677778999999998886543322111011112366677776666666


Q ss_pred             EEecCCcEEEE-EcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522          314 AGYSNGDCYVW-DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  361 (388)
Q Consensus       314 ~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  361 (388)
                      ++..+ ...+- ++...   ..+... ......|.+|.|-.+..++++-
T Consensus       187 ~~~g~-~~q~k~~i~~~---~~~~~p-~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AWRNG-EMEKQFEFSLP---SELEEL-PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETT-EEEEEEEECCC---HHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCCC-ceeeccCCCCc---cccCCC-cCCCcceeEEEEecCceEEEEE
Confidence            65322 11111 10000   011000 1234568899998777666644

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.02  E-value=0.26  Score=39.31  Aligned_cols=190  Identities=11%  Similarity=0.119  Sum_probs=109.1

Q ss_pred             ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC-----CCCcEEEEee-C-CC--ceEEEECCCCCcc
Q 016522          172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-----SNSRMFVSGS-C-DS--TARLWDTRVASRA  242 (388)
Q Consensus       172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~l~~~~-~-dg--~i~i~d~~~~~~~  242 (388)
                      .+++.....+-|.+||+. |+.+..+.       .+.++.+..-.     ....-+++++ . ++  .|.+|.+......
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~-------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC-------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc-------cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            466666677779999985 66666552       24555555431     1222244444 2 22  5777877543233


Q ss_pred             eEEEecc-------cCCeeEEEE--ccC-CC-EEEEeeCCCcEEEEECCC---CceeeEeeeccCCCCCCCeEEEEecCC
Q 016522          243 VRTFHGH-------EGDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSIS  308 (388)
Q Consensus       243 ~~~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (388)
                      +..+...       ...+..+|+  +|. +. ++++...+|.+..|.+..   +..........  .....+-.+.++..
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde  190 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDE  190 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCC
Confidence            3333221       123667777  553 44 466677889998887632   22222111111  11234788999999


Q ss_pred             CCEEEEEecCCcEEEEEcc-----cceEEeeccCCCCCcCCCeeEEEECC----CCCeEEEccCCCeEEEeccc
Q 016522          309 GRLLFAGYSNGDCYVWDTL-----LAKVVLNLGSLQNSHEGRITCLGLSA----DGSALCTGSWDTNLKVSLHY  373 (388)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~dg~v~iw~~~  373 (388)
                      ...|+++-++..|+.++..     ....+.....  ......+..|+.-.    +|-+|+|.-.+++..||...
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g--~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSS--SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccC--ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            9999999888777666653     2233322210  12456788887542    34455666678999999754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.97  E-value=0.43  Score=41.33  Aligned_cols=112  Identities=18%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             CeEEEEeCCCcEEEEECCCCCeeeEeeeCCc--------cE-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522           80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA--------WV-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      ..|.+++.++.|.-.|..+|+.+-.+.....        .+ ..+++  .+..++.++.++.+.-.|..+++.     ..
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~-----~W  141 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKV-----VW  141 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCE-----EE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccce-----ee
Confidence            4677788899999999999999887643210        00 11111  245677788888888888887651     01


Q ss_pred             eEEeccccc--ce--EEEEEEe--CCCceEEEe------eCCCeEEEEecCCCceEEEee
Q 016522          151 SRMLSGHKG--YV--SCCQYVP--DEDTHLITS------SGDQTCVLWDITTGLRTSVFG  198 (388)
Q Consensus       151 ~~~~~~~~~--~v--~~~~~~~--~~~~~l~~~------~~dg~v~i~d~~~~~~~~~~~  198 (388)
                      ...+..+..  ..  .-....+  .+...++.+      +..+.|.-+|.++++.+..+.
T Consensus       142 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             eecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence            111111110  00  0011111  011122222      245679999999998887763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.82  E-value=0.33  Score=38.76  Aligned_cols=201  Identities=6%  Similarity=0.130  Sum_probs=111.7

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC------CCCCEEEEeeC--C--CcEEEEeCCCCCCCCC
Q 016522           77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS------PTGQSVACGGL--D--SVCSIFNLNSPTDKDG  146 (388)
Q Consensus        77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--g~i~vw~~~~~~~~~~  146 (388)
                      |+..+++....++-|.+||+ .|+.+..+..  +.+..+..-      ....-+++++.  +  ..|.+|.+.....   
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~---  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT---
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc---
Confidence            34567777777777999997 4887776643  344444432      22333555542  2  3577888764221   


Q ss_pred             CCceeEEecc-------cccceEEEEE--EeCCC-ceEEEeeCCCeEEEEecC---CCceEEEeecccccCCccCeEEEE
Q 016522          147 NLPVSRMLSG-------HKGYVSCCQY--VPDED-THLITSSGDQTCVLWDIT---TGLRTSVFGGEFQSGHTADVLSVS  213 (388)
Q Consensus       147 ~~~~~~~~~~-------~~~~v~~~~~--~~~~~-~~l~~~~~dg~v~i~d~~---~~~~~~~~~~~~~~~~~~~i~~~~  213 (388)
                         ....+..       -...+..+|+  ++..+ .+++....+|.+..|.+.   .+.........  ......+..+.
T Consensus       112 ---~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~--f~~~~q~EGCV  186 (353)
T d1h6la_         112 ---TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA--FKMNSQTEGMA  186 (353)
T ss_dssp             ---EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE--EECSSCEEEEE
T ss_pred             ---ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec--cCCCCccceEE
Confidence               1111111       1123556666  44433 356777889999888763   22222222111  13345788888


Q ss_pred             eeCCCCcEEEEeeCCCceEEEECCCCC----cceEEEec--ccCCeeEEEEcc--CCC-EEE-EeeCCCcEEEEECCCC-
Q 016522          214 ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG--HEGDVNTVKFFP--DGN-RFG-TGSDDGTCRLFDIRTG-  282 (388)
Q Consensus       214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~--~~~~i~~~~~~~--~~~-~l~-~~~~dg~i~i~d~~~~-  282 (388)
                      +.+ ....|+.+-++..+..++.....    ..+....+  ....+..|+.-.  ++. +|+ +.-.+++..+||.... 
T Consensus       187 vDd-e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         187 ADD-EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EET-TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EeC-CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            987 66677777777766666654221    11111111  345677777653  322 444 4446788999998764 


Q ss_pred             ceeeEee
Q 016522          283 HQLQVYY  289 (388)
Q Consensus       283 ~~~~~~~  289 (388)
                      ..+..+.
T Consensus       266 ~~~g~F~  272 (353)
T d1h6la_         266 KYVADFQ  272 (353)
T ss_dssp             CEEEEEE
T ss_pred             cccceEE
Confidence            4555554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.37  Score=38.88  Aligned_cols=183  Identities=13%  Similarity=0.043  Sum_probs=100.6

Q ss_pred             CeeEEEeCCCCCeEEEEeCCCcEEEEECC---------CCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522           69 KVYSLDWTSERNRIVSASQDGRLIVWNAL---------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN  139 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~  139 (388)
                      ...-++.++...+++.|+.++ ++|-...         ...........-..|..++|+.+  .+++. .++.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            456788888777888888775 5666531         11111112222236899999754  45544 45567888877


Q ss_pred             CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522          140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS  219 (388)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (388)
                      ...       .......-..++..+.++|.   .++....+|.+.++++..+.............-...+.+++|++ ++
T Consensus       114 ~l~-------~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kg  182 (381)
T d1xipa_         114 ELS-------EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RS  182 (381)
T ss_dssp             STT-------CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SC
T ss_pred             ccc-------cccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-Cc
Confidence            632       12222223456777777763   46777778999999998886543321111112235577777876 66


Q ss_pred             cEEEEeeCCCceEEE-ECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522          220 RMFVSGSCDSTARLW-DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  268 (388)
Q Consensus       220 ~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  268 (388)
                      ..++++..+ ...+- ++... ..+.........+.+|.|-.+..++++-
T Consensus       183 kq~v~~~g~-~~q~k~~i~~~-~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         183 FQSFAWRNG-EMEKQFEFSLP-SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEETT-EEEEEEEECCC-HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEEeCCC-ceeeccCCCCc-cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            666665322 22211 22111 1111111123457888988666655544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.57  E-value=0.52  Score=39.25  Aligned_cols=54  Identities=15%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee--------CCccEEEEEECCC
Q 016522           67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSPT  120 (388)
Q Consensus        67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~  120 (388)
                      -..-++|+|.|++++|++--.+|.|++++..++........        .......++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34677999999999888775679999998777665432221        1245789999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.34  E-value=0.31  Score=35.28  Aligned_cols=145  Identities=19%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec----------ccCCeeEEEEc-cCCCEEEEeeC-CCcE
Q 016522          207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----------HEGDVNTVKFF-PDGNRFGTGSD-DGTC  274 (388)
Q Consensus       207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~i~~~~~~-~~~~~l~~~~~-dg~i  274 (388)
                      -.|.+++..  +.+..++|+......+|-+..+ + ++.+..          ...-|..+.+- ++..-++++.- .|.+
T Consensus       104 vRI~S~~yd--dk~vvF~Gased~~~LYviegG-k-lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         104 MRILSGVDT--GEAVVFTGATEDRVALYALDGG-G-LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             BEEEEEEEC--SSCEEEEEECSSCEEEEEEETT-E-EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             EEEEEeeec--CceEEEecccCCceEEEEEeCC-c-eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            456676665  7788889988888888887765 2 222211          11223333332 22223444443 5666


Q ss_pred             EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-C--cEEEEEcccceEEe-eccCC--CCCcCCCeeE
Q 016522          275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVL-NLGSL--QNSHEGRITC  348 (388)
Q Consensus       275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~-~~~~~--~~~~~~~v~~  348 (388)
                      ++++...|.                ++...+.++.+. +++..+ |  ...-+|+++++... .+...  .....-.|+-
T Consensus       180 ri~tpkeGS----------------~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~  242 (313)
T d2hu7a1         180 RVFDSGEGS----------------FSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITW  242 (313)
T ss_dssp             EEECCSSEE----------------EEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEE
T ss_pred             EEecCCCCc----------------ccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEe
Confidence            666654432                444445555444 333321 1  22244666554322 11100  0011234555


Q ss_pred             EEECCCCCeEEEccCCCeEEEecc
Q 016522          349 LGLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       349 ~~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +-+.|++++++.+-.||.=++|.-
T Consensus       243 ~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         243 LGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             EEECTTSCEEEEEEETTEEEEEET
T ss_pred             eeeCCCCcEEEEEecCCchheeec
Confidence            668899988888888888888763

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.66  Score=35.52  Aligned_cols=104  Identities=9%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             CCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccce
Q 016522          261 DGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK  330 (388)
Q Consensus       261 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  330 (388)
                      ++.+++.|+.+     ..+..||..+.+......... .   ....+.+. .++.+++.|+.++     ....+|..+.+
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~---~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~  222 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-I---RSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET  222 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-C---CBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccccc-c---cccccccc-eeeeEEEecCccccccccceeeeeeccee
Confidence            44555566543     347788877654332211111 1   11122222 2455666665443     56788877765


Q ss_pred             EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe-----EEEeccc
Q 016522          331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN-----LKVSLHY  373 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----v~iw~~~  373 (388)
                      ....-. .... ......+.  .++++++.||.++.     |.+|++.
T Consensus       223 ~~~~~~-~p~~-r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         223 WTFVAP-MKHR-RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             EEECCC-CSSC-CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             eecccC-ccCc-ccceEEEE--ECCEEEEEecCCCCeecceEEEEECC
Confidence            543221 1011 11112222  26788888876554     4555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.37  E-value=1.1  Score=37.08  Aligned_cols=112  Identities=12%  Similarity=0.064  Sum_probs=64.2

Q ss_pred             cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc---CCCCCCCeEEEEecCC---CCEEEEEec------
Q 016522          250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSIS---GRLLFAGYS------  317 (388)
Q Consensus       250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~---~~~l~~~~~------  317 (388)
                      -...++|+|.|+++++++--..|.|++++..++..........   ..........++|+|+   ..++.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3467899999999988877567999999987766543332211   1122346789999985   334444321      


Q ss_pred             -C----Cc--EEEEEcccc-------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522          318 -N----GD--CYVWDTLLA-------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  363 (388)
Q Consensus       318 -d----g~--i~i~d~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  363 (388)
                       +    ..  +..+.....       +.+.........|.  -..|+|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence             1    11  223322211       11111111112343  578999999987777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.29  E-value=1.1  Score=36.78  Aligned_cols=224  Identities=14%  Similarity=0.128  Sum_probs=109.0

Q ss_pred             EEEEEECCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee--------
Q 016522          112 VMTCAFSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--------  178 (388)
Q Consensus       112 v~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------  178 (388)
                      +..+.++|++++++.+-.     ...++++|+.+++.      ....+.  ......++|.+++..++.+.-        
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~------~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE------LPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE------EEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCccee------cccccc--cccccceEEcCCCCEEEEEEeccccCccc
Confidence            455678999999886432     34799999998651      111121  112245789998765555432        


Q ss_pred             -------CCCeEEEEecCCCceE--EEeecccccCCccCeEEEEeeCCCCcEEEEee---CCCceEE--EECCCCCcc--
Q 016522          179 -------GDQTCVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARL--WDTRVASRA--  242 (388)
Q Consensus       179 -------~dg~v~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i--~d~~~~~~~--  242 (388)
                             ....|..+.+.+....  ..+..   ......+..+..++ ++++++...   .++...+  .|+......  
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccCCcceEEEEECCCCcccccccccc---ccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                   1235778887776332  33310   12223455666676 656655332   2333344  454432111  


Q ss_pred             -----eEEEecccCCeeEEEEccCCCEEEEee---CCCcEEEEECCCCcee--eEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522          243 -----VRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLL  312 (388)
Q Consensus       243 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (388)
                           ............-+. +.++.+++...   .++.|...++......  ..+....    ...+..-.+...+.+|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~----~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH----EKDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC----SSCEEEEEEEETTTEE
T ss_pred             cccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEeccc----CcceeeeEEEEECCEE
Confidence                 122222222222222 22233333322   2456766776654321  2222111    1123333344445566


Q ss_pred             EEEe-cCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522          313 FAGY-SNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  356 (388)
Q Consensus       313 ~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  356 (388)
                      +... .++  .|++++..+++.....    ....+.|..+...++..
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~----~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCS
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEec----CCCCceEeeccCCCCCC
Confidence            5554 554  6889998877765443    22334555555444443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.22  E-value=0.64  Score=33.63  Aligned_cols=231  Identities=12%  Similarity=0.081  Sum_probs=118.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE-ECCCCCEEEEe------eCCCcEEEEeCCCCCCCCCCCce
Q 016522           78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA-FSPTGQSVACG------GLDSVCSIFNLNSPTDKDGNLPV  150 (388)
Q Consensus        78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~------~~dg~i~vw~~~~~~~~~~~~~~  150 (388)
                      +.++|+++...|.+.++-+..++.+.-.+.+   |.... -.+.-.++..+      -.-..+.+-++..+.       .
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkeP---I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G-------E   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREP---INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG-------E   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSC---CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTT-------C
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEeccc---ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCC-------e
Confidence            3457888888999999988777665433322   22211 11111222211      112234444444322       1


Q ss_pred             eEEecccc-cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc----ccCCccCeEEEEeeCCCCcEEEEe
Q 016522          151 SRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF----QSGHTADVLSVSISGSNSRMFVSG  225 (388)
Q Consensus       151 ~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~  225 (388)
                      ...+.... -.|.++++  ++.+.+++|+......+|-++.++.......+-    ..-...-|..+.+...+..-|+++
T Consensus        95 E~~i~spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             EEECTTSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             eeEecCCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence            12222222 34444444  556788999998889999998886544321100    001122333443332233334444


Q ss_pred             eC-CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCceeeEeeeccC--CCCCCC
Q 016522          226 SC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHG--ENEIPH  299 (388)
Q Consensus       226 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~  299 (388)
                      .. .|.+++++...            +.++.....+..+. +++-.   .....-+|+++++....-.....  .-....
T Consensus       173 dl~SG~lri~tpke------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~  239 (313)
T d2hu7a1         173 NLSSGGLRVFDSGE------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA  239 (313)
T ss_dssp             ETTTEEEEEECCSS------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSE
T ss_pred             ecccCCEEEecCCC------------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceE
Confidence            44 66666666543            34555555555443 33321   11222457776553332211100  000113


Q ss_pred             eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522          300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  335 (388)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (388)
                      |+-+-+.|++++++.+-.||.-.+|.  +++.+...
T Consensus       240 I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         240 ITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             EEeeeeCCCCcEEEEEecCCchheee--cceEecCC
Confidence            56677999999999999999999997  67766544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.53  E-value=1.4  Score=34.98  Aligned_cols=188  Identities=9%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             CeeEEEeCCCCCeEEEEeC------------CCcEEEEECCCCCee-eEeeeCC-------ccEEEEEE--CCCCC-EEE
Q 016522           69 KVYSLDWTSERNRIVSASQ------------DGRLIVWNALTSQKT-HAIKLPC-------AWVMTCAF--SPTGQ-SVA  125 (388)
Q Consensus        69 ~v~~~~~~~~~~~l~t~~~------------dg~v~iwd~~~~~~~-~~~~~~~-------~~v~~~~~--~~~~~-~l~  125 (388)
                      .--+|+..|+|..+++++.            .|.|.++|+.+.+.. ..+....       -....+..  .++|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3446888899877666542            489999998765432 2222111       12333333  44555 344


Q ss_pred             Ee---eCCCcEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEee-----------------CCCeEE
Q 016522          126 CG---GLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSS-----------------GDQTCV  184 (388)
Q Consensus       126 ~~---~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~  184 (388)
                      +.   ....+|.+|++....   ..+........ .....++++...++ .+++|-.                 .-+.|.
T Consensus       116 vvnH~~~~~~ieif~~~~~~---~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEE---KSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTT---TEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEeccCCCceeEEEEEeCCC---CeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            43   245678888876532   12222333322 23456888888886 5666621                 123444


Q ss_pred             EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEcc-CC
Q 016522          185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFP-DG  262 (388)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~-~~  262 (388)
                      -||.  +......      ..-...+.++++|++..++++-+..+.|+.|++........ ....-.+..-.+.+.+ ++
T Consensus       192 ~~~~--~~~~~~~------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g  263 (340)
T d1v04a_         192 YYSP--NDVRVVA------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG  263 (340)
T ss_dssp             EECS--SCEEEEE------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred             EEcC--CceEEEc------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCC
Confidence            4554  3322222      22356789999995556677777888999999875522211 1112234456788876 44


Q ss_pred             CEEEEe
Q 016522          263 NRFGTG  268 (388)
Q Consensus       263 ~~l~~~  268 (388)
                      .+.+.+
T Consensus       264 ~lwva~  269 (340)
T d1v04a_         264 DLWVGC  269 (340)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            444443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.35  E-value=1.7  Score=33.01  Aligned_cols=221  Identities=11%  Similarity=-0.010  Sum_probs=103.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522          110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT  189 (388)
Q Consensus       110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~  189 (388)
                      ..|..++--  ..+.++-. ||.|..|-........    .   -......|..+..-   ..+.+. -.||.+..|...
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG----~---~~~~~~~v~~v~~G---~~~~~a-l~dg~v~~wG~~   91 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLT----M---PAATQSGVDAIAAG---NYHSLA-LKDGEVIAWGGN   91 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTS----C---CGGGGSCCCEEEEC---SSEEEE-EETTEEEEEECC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCcee----e---eecccccceEEecC---CCceee-eeeeeeeccCCC
Confidence            347776652  22333333 8999999766533111    0   11122334444432   222222 248999999764


Q ss_pred             CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522          190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  269 (388)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  269 (388)
                      ..-.....     ......+..++...  ...++  ..|+.+..|........ .........|..++-  ... .+...
T Consensus        92 ~~gq~~~~-----~~~~~~~~~i~~~~--~~~~~--~~dg~v~~~g~~~~~~~-~~~~~~~~~v~~~~~--~~~-~~~~~  158 (273)
T d1jtdb_          92 EDGQTTVP-----AEARSGVDAIAAGA--WASYA--LKDGKVIAWGDDSDGQT-TVPAEAQSGVTALDG--GVY-TALAV  158 (273)
T ss_dssp             TTSTTCCC-----GGGGSSCCEEEEET--TEEEE--EETTEEEEEECCTTSTT-SCCGGGGSSEEEEEE--CSS-EEEEE
T ss_pred             cceeeccc-----cccccceeEEeeec--ccccc--cccccceecccCCCCce-eeeccCCceEEEEec--cce-eeeee
Confidence            33211111     12233455555443  22222  24888999975443221 111112234444433  222 23333


Q ss_pred             CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEE
Q 016522          270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  349 (388)
Q Consensus       270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  349 (388)
                      .++.+..|-............     ....|..++...  .+.+.- .||.|+-|=....-.+...    ......|..|
T Consensus       159 ~~g~~~~~G~~~~g~~~~~~~-----~~~~v~~Is~G~--~h~~~l-~dG~v~~WG~n~~Gql~~~----~~~~~~v~~I  226 (273)
T d1jtdb_         159 KNGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVP----TEALSGVSAI  226 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGG-----GSSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCC----GGGGSSCCEE
T ss_pred             cccceeEeecccCCccccccc-----ccCCccceeccc--eeeEEE-ecCcEEEcCCCCCCccCCC----ccCCCCcEEE
Confidence            577888887654332211111     122467766532  333332 3799999954322111110    1223457777


Q ss_pred             EECCCCCeEEEccCCCeEEEecc
Q 016522          350 GLSADGSALCTGSWDTNLKVSLH  372 (388)
Q Consensus       350 ~~~~~~~~l~s~~~dg~v~iw~~  372 (388)
                      +-.... .++.  .||.|..|=.
T Consensus       227 ~~G~~~-~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         227 ASGEWY-SLAL--KNGKVIAWGS  246 (273)
T ss_dssp             EECSSC-EEEE--ETTEEEEEST
T ss_pred             EeCcce-EEEE--ECCEEEEECC
Confidence            765433 3444  3899999943

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.36  E-value=4.6  Score=32.78  Aligned_cols=165  Identities=12%  Similarity=0.109  Sum_probs=85.8

Q ss_pred             ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec--ccccCCccCeEEEEeeCCCCcEEEEeeCC----C
Q 016522          156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCD----S  229 (388)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g  229 (388)
                      +-.+.|.+|+++|..+.++.+++..|-|..-+ ..++.-..+..  .........+.+|+++|.+.+.+..+..+    .
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            34678999999999888888888776654332 22333222211  00112334688999999777777665422    1


Q ss_pred             ceEEEECCCCCcceEEEec---------ccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeee-ccCCCCCC
Q 016522          230 TARLWDTRVASRAVRTFHG---------HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHGENEIP  298 (388)
Q Consensus       230 ~i~i~d~~~~~~~~~~~~~---------~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~  298 (388)
                      ...+|--....+.-..+..         .......+.++| +...+.+++.++-|.. ....++.-..... ........
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSCCCCSSS
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcccccCCc
Confidence            2345544333233332221         112355688998 4556666666554432 3333333222211 11112223


Q ss_pred             CeEEEEecCCCC-EE-EEEecCCcEE
Q 016522          299 HVTSIAFSISGR-LL-FAGYSNGDCY  322 (388)
Q Consensus       299 ~i~~~~~~~~~~-~l-~~~~~dg~i~  322 (388)
                      .+..+.++|... .| +.+...+.|+
T Consensus       167 ~~~~i~~~p~~~~~~y~~~~~~~giy  192 (427)
T d2ebsa1         167 GYTSVIFDPERNGTIYASATAPQGMY  192 (427)
T ss_dssp             CEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred             cceEEEecccccceeeeeeeecccce
Confidence            478889988644 33 3333333443

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.71  E-value=4.3  Score=31.63  Aligned_cols=243  Identities=7%  Similarity=0.024  Sum_probs=127.6

Q ss_pred             CCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe---CCCCCCCCCCCc
Q 016522           77 SERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNLP  149 (388)
Q Consensus        77 ~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~~  149 (388)
                      |+...+++-+.+|.|+--++.+    +..-..++ ....+..+........|+.-+..|.++...   +........-.+
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            5677888999999998655421    11111122 233455555555555566666777655544   433221111111


Q ss_pred             eeEEec-ccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCce------EEEeecccccCCccCeEEEEeeCCCCc
Q 016522          150 VSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR------TSVFGGEFQSGHTADVLSVSISGSNSR  220 (388)
Q Consensus       150 ~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (388)
                      +...+. .....+..+...++  .+.+++..+..|.++..++..-..      ...+    .......+..+.... +..
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i----~L~~~D~l~~v~~~~-~~~  156 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGI----NLKNDDQVVDVHLTD-GMN  156 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECS----CCCTTCCEEEEEEEC-SCS
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhc----cccccccccceeccC-CCe
Confidence            111111 12333433333322  245788999999999988754211      1111    134556677777765 556


Q ss_pred             EEEEeeCCCceEEEECCCCC------cceEEEec-ccCCeeE-EEEccCCCEEEEeeCCCcEEEEECCCCce-------e
Q 016522          221 MFVSGSCDSTARLWDTRVAS------RAVRTFHG-HEGDVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------L  285 (388)
Q Consensus       221 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~  285 (388)
                      .++.++..|.+..|+...-.      .-+.-+.- ....+.+ ....+++..|++.+..|..+.-.+.....       .
T Consensus       157 ~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv  236 (323)
T d1wp5a_         157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV  236 (323)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred             EEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhcccccccccc
Confidence            67778899999999875431      11111111 1233443 34445667888888888877766543211       1


Q ss_pred             eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522          286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  327 (388)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (388)
                      ..+..  .......+..+....+...|+..+..|.+.-.++.
T Consensus       237 ~~~k~--~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         237 VILRE--LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             ECSCC--CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             ccccc--cccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            11111  01112235555555555667677777777666654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.35  E-value=4  Score=30.80  Aligned_cols=221  Identities=14%  Similarity=0.046  Sum_probs=103.4

Q ss_pred             CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522           68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN  147 (388)
Q Consensus        68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  147 (388)
                      ..|..|+....  ..+.-. ||.|..|-......+-.-......+..++-- +...++  -.||.+..|........   
T Consensus        26 ~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~a--l~dg~v~~wG~~~~gq~---   96 (273)
T d1jtdb_          26 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLA--LKDGEVIAWGGNEDGQT---   96 (273)
T ss_dssp             SSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEE--EETTEEEEEECCTTSTT---
T ss_pred             CCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceee--eeeeeeeccCCCcceee---
Confidence            35888876332  333334 8999999765433322112222334444331 112222  24889999986542211   


Q ss_pred             CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522          148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  227 (388)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  227 (388)
                       ..   .......+..++...   ...+. -.|+.+..|.-.........     ......|..++-.  . ..++ ...
T Consensus        97 -~~---~~~~~~~~~~i~~~~---~~~~~-~~dg~v~~~g~~~~~~~~~~-----~~~~~~v~~~~~~--~-~~~~-~~~  159 (273)
T d1jtdb_          97 -TV---PAEARSGVDAIAAGA---WASYA-LKDGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGG--V-YTAL-AVK  159 (273)
T ss_dssp             -CC---CGGGGSSCCEEEEET---TEEEE-EETTEEEEEECCTTSTTSCC-----GGGGSSEEEEEEC--S-SEEE-EEE
T ss_pred             -cc---ccccccceeEEeeec---ccccc-cccccceecccCCCCceeee-----ccCCceEEEEecc--c-eeee-eec
Confidence             00   011122333343332   22222 34788888874433221111     1222344444432  2 2233 334


Q ss_pred             CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522          228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  307 (388)
Q Consensus       228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (388)
                      ++.+..|-...... ..........|..|+...  ...+.-. ||.|+.|=......+.....     ....|..++-..
T Consensus       160 ~g~~~~~G~~~~g~-~~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~-----~~~~v~~I~~G~  230 (273)
T d1jtdb_         160 NGGVIAWGDNYFGQ-TTVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTE-----ALSGVSAIASGE  230 (273)
T ss_dssp             TTEEEEEECCTTST-TSCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGG-----GGSSCCEEEECS
T ss_pred             ccceeEeecccCCc-ccccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCcc-----CCCCcEEEEeCc
Confidence            78888887654422 212222345677776542  2333333 79999996543322221111     112366665443


Q ss_pred             CCCEEEEEecCCcEEEEEc
Q 016522          308 SGRLLFAGYSNGDCYVWDT  326 (388)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~  326 (388)
                      . ..++.  .||.|+.|-.
T Consensus       231 ~-~~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         231 W-YSLAL--KNGKVIAWGS  246 (273)
T ss_dssp             S-CEEEE--ETTEEEEEST
T ss_pred             c-eEEEE--ECCEEEEECC
Confidence            2 23333  4899999953