Citrus Sinensis ID: 016542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSKQDNKSYDQDLDATSIAELDSFWDY
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEEEcccccccccccccEEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccccEEEEEcccccccccccccccHcccccEEEccccccEEcccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccHccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
MEEAVVDQhnhrqgvidlppgfrfhptdeEIITHYLTEKvmntsfsacaigevdlnksepwdlpskakmgekEFYFFcqrdrkyptgmrtnrateagywkatgkdkeiykgnkggvgggglvgMKKTLVFykgrapkgektnWVMHEYRLEgkfsyynlpkaakdeWVVCRVFHKnigggikkipipglpmnssfgddffanyaslpplmdppgsssfgngghqnefkpmntastssrsynipadnqnflqphqipiqNQIFSYhqnnnnpnpgylhqgtirssTGAISSlmgagfegngDGQAILRALAStshhhqqhnlesssqckveqfssnqsmisrsqdtglstdmntTTEISSVVskqdnksydqdldatsiaeldsfwdy
Flexible Loop (DISEMBL)
MEEAVvdqhnhrqgvidlppgfrFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYffcqrdrkyptgmrtnrateagywkatgkdkeiykgnkggvgggglvGMKKTLVFYKgrapkgektnwVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNigggikkipipGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSvvskqdnksydqdldatsiaeldsfwdy
Low Complexity Region (SEG)
MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYkgnkggvgggglvgmkkTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNigggikkipipgLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSKQDNKSYDQDLDATSIAELDSFWDY
Disordered region (IsUnstruct)
*************GVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDL****KMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSFGDDFFANYA*************************************************QIPIQNQIFSY***************************************************************************************************************************
Disordered Region (DISOPRED)
********************GFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL****************WVVCRVFH********************************************************************************************************************************************************************************MNT*********************ATSIAELDSFWDY
Disordered Region (DISEMBL)
**********HRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALAS******************************SQDTGLSTDMNTTTEISSVVSKQDNKSYDQDLDATSIAELDSFWDY
Disordered Region (DISPRO)
***************IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFS***LPKAAKDEWVVCRVFHKNI***************************************************************N****NQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESS**************************************************ATSIAELDSFWDY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSKQDNKSYDQDLDATSIAELDSFWDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q9FLJ2	336	NAC domain-containing pro	no	no	0.803	0.925	0.486	5e-84
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.397	0.410	0.729	8e-67
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.397	0.496	0.716	2e-64
Q5CD17	396	NAC domain-containing pro	no	no	0.431	0.421	0.640	1e-61
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.421	0.488	0.622	4e-59
Q84TE6	324	NAC domain-containing pro	no	no	0.664	0.793	0.419	4e-53
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.379	0.431	0.570	4e-47
Q93VY3	297	NAC domain-containing pro	no	no	0.397	0.518	0.552	3e-46
Q84K00	567	NAC domain-containing pro	no	no	0.405	0.276	0.534	5e-46
Q9FWX2	395	NAC domain-containing pro	no	no	0.390	0.382	0.527	7e-46

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  311 bits (797), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 187/384 (48%), Positives = 227/384 (59%), Gaps = 73/384 (19%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           +DLPPGFRFHPTDEE+ITHYL +KV++TSFSA AIGEVDLNKSEPW+LP  AKMGEKE+Y
Sbjct: 14  MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEWY 73

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRA 135
           FFC RDRKYPTG+RTNRATEAGYWKATGKDKEIY+G         LVGMKKTLVFY+GRA
Sbjct: 74  FFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGK-------SLVGMKKTLVFYRGRA 126

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSF 195
           PKG+KTNWVMHEYRLEGKFS +NLPK AK+EWV+CRVF K+ GG  KKIPI  L    S 
Sbjct: 127 PKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGG--KKIPISSLIRIGSL 184

Query: 196 GDDFFANYASLPPLMD-----------PPGSSSFGNGGHQNEFKPMNTASTSSRSYNIPA 244
           G DF  N + LP L D           P     F N   QN+   +N  S+   + +I A
Sbjct: 185 GTDF--NPSLLPSLTDSSPYNDKTKTEPVYVPCFSNQTDQNQGTTLNCFSSPVLN-SIQA 241

Query: 245 DNQNFLQPHQIPI-QNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQ 303
           D       H+IP+ Q Q      N  +P     H            S++ A  E N    
Sbjct: 242 DIF-----HRIPLYQTQSLQVSMNLQSPVLTQEH------------SVLHAMIENN---- 280

Query: 304 AILRALASTSHHHQQHNLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSK 363
                        ++ +L++               +S SQ+TG+STDMNT         K
Sbjct: 281 -------------RRQSLKT---------------MSVSQETGVSTDMNTDISSDFEFGK 312

Query: 364 QDNKSYDQDLDATSIAELDSFWDY 387
           +   S +    +T   +L+ FW+Y
Sbjct: 313 RRFDSQEDPSSSTGPVDLEPFWNY 336

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 132/159 (83%), Gaps = 5/159 (3%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFF 77
           LPPGFRFHPTDEE+ITHYL  KV++  FS+ AI EVDLNK EPW LP +AKMGEKE+YFF
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query: 78  CQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPK 137
             RDRKYPTG+RTNRATEAGYWKATGKD+EI+           LVGMKKTLVFYKGRAPK
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKT-----CALVGMKKTLVFYKGRAPK 131

Query: 138 GEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           GEK+NWVMHEYRLEGKFSY+ + +++KDEWV+ RVF K 
Sbjct: 132 GEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  246 bits (628), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 137/159 (86%), Gaps = 5/159 (3%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFF 77
           +PPGFRFHPTDEE+IT+YL +KV++++FS  AI +VDLNKSEPW+LP KAKMGEKE+YFF
Sbjct: 20  MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEWYFF 79

Query: 78  CQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPK 137
             RDRKYPTG+RTNRATEAGYWKATGKD+EI K +K       L+GMKKTLVFYKGRAPK
Sbjct: 80  TLRDRKYPTGLRTNRATEAGYWKATGKDREI-KSSK----TKSLLGMKKTLVFYKGRAPK 134

Query: 138 GEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           GEK+ WVMHEYRL+GKFSY+ +  +AKDEWV+C+V  K+
Sbjct: 135 GEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKS 173

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 131/178 (73%), Gaps = 11/178 (6%)

Query: 12  RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGE 71
           + G + LPPGFRFHPTD E+I  YL +K++N SF++  IGEVDLNK EPWDLPSKAKMGE
Sbjct: 13  QDGGLFLPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGE 72

Query: 72  KEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKG----NKGGVGGGG-----LV 122
           KE+YFF  +D KYPTGMRTNRAT+ GYWKATGKD+EI++     N    GG       LV
Sbjct: 73  KEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLV 132

Query: 123 GMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYY--NLPKAAKDEWVVCRVFHKNIG 178
           GMKKTLVFY GRAPKG KTNWVMHE+RL      +  NL    KDEWVVC+VFHK  G
Sbjct: 133 GMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKKQG 190

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  228 bits (582), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 129/175 (73%), Gaps = 12/175 (6%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           + E   ++ N R     LPPGFRFHPTDEE+IT YL  K+ +   S   I EVDLN+ EP
Sbjct: 9   LSELAGEERNER----GLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEP 64

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           W+LP  AKMGE+E+YF+  RDRKYPTG+RTNRAT AGYWKATGKDKE++ G     GGG 
Sbjct: 65  WELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSG-----GGGQ 119

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK 175
           LVGMKKTLVFYKGRAP+G KT WVMHEYRLE   S+ +     K+EWV+CRVF+K
Sbjct: 120 LVGMKKTLVFYKGRAPRGLKTKWVMHEYRLENDHSHRH---TCKEEWVICRVFNK 171

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 172/305 (56%), Gaps = 48/305 (15%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVM-NTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYF 76
           LPPGFRFHP D+E++  YL  + + N       + +VDLNK EPWD+P  A +G K++YF
Sbjct: 19  LPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKDWYF 78

Query: 77  FCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAP 136
           + QRDRKY TG+RTNRAT  GYWKATGKD+ I +        G LVGM+KTLVFY+GRAP
Sbjct: 79  YSQRDRKYATGLRTNRATATGYWKATGKDRTILR-------KGKLVGMRKTLVFYQGRAP 131

Query: 137 KGEKTNWVMHEYRLEGKFSYYNLPKAA-KDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSF 195
           +G KT+WVMHE+RL+G     N   ++ K++WV+CRVFHKN  G I +       M S F
Sbjct: 132 RGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGVICRD-----NMGSCF 186

Query: 196 GDDFFANYASLPPLMDP-----PGSSSFGNGGHQ---NEFKPMNTASTSSRSYNIPADNQ 247
            +      ASLPPLMDP        SS+ +  H    NE  P  +  + +++ N  ++  
Sbjct: 187 DE---TASASLPPLMDPYINFDQEPSSYLSDDHHYIINEHVPCFSNLSQNQTLN--SNLT 241

Query: 248 NFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEG-NGDGQAIL 306
           N +   +IP +           NPNP +         TG  +S    G +      Q +L
Sbjct: 242 NSVSELKIPCK-----------NPNPLF---------TGGSASATLTGLDSFCSSDQMVL 281

Query: 307 RALAS 311
           RAL S
Sbjct: 282 RALLS 286

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 115/163 (70%), Gaps = 16/163 (9%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMG---EKEF 74
           +PPGFRFHPTDEE++ +YL +K+    F    I EVDLNK EPWDL  + K+G   + E+
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 75  YFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGR 134
           YFF  +DRKYPTG RTNRAT AG+WKATG+DK I    K        +GM+KTLVFYKGR
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKK-------IGMRKTLVFYKGR 121

Query: 135 APKGEKTNWVMHEYRLEGKFSYYNLPKA--AKDEWVVCRVFHK 175
           AP G+KT+W+MHEYRLE      + P+A  ++D WVVCRVF K
Sbjct: 122 APHGQKTDWIMHEYRLEDA----DDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 107/163 (65%), Gaps = 9/163 (5%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           + LPPGFRF+PTDEE++  YL  KV    FS   IG++DL K +PWDLPSKA  GEKE+Y
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWY 71

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRA 135
           FF  RDRKYP G R NR   +GYWKATG DK I          G  VG+KK LVFY G+A
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-------TADGRRVGIKKALVFYAGKA 124

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIG 178
           PKG KTNW+MHEYRL      +   K   D+WV+CR++ K  G
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKL--DDWVLCRIYKKTSG 165

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 118/172 (68%), Gaps = 15/172 (8%)

Query: 12  RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGE 71
           R  V  L PGFRFHPTDEE++ +YL  KV N  F   AI   D+ KSEPWDLP K+K+  
Sbjct: 3   RGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKS 62

Query: 72  K--EFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLV 129
           +  E+YFF   D+KY  G +TNRATE GYWK TGKD+EI  G++       +VGMKKTLV
Sbjct: 63  RDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSR-------VVGMKKTLV 115

Query: 130 FYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAA--KDEWVVCRVFHKNIGG 179
           ++KGRAP+GE+TNWVMHEYRL  +    +L KA   ++ +V+CR+F K+  G
Sbjct: 116 YHKGRAPRGERTNWVMHEYRLSDE----DLKKAGVPQEAYVLCRIFQKSGTG 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  184 bits (468), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 115/165 (69%), Gaps = 14/165 (8%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKE---F 74
           +PPGFRFHPTDEE++ +YL +KV +       I ++DL K EPWDL    K+G +E   +
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDW 66

Query: 75  YFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGR 134
           YFF  +D+KYPTG RTNRAT+AG+WKATG+DK IY  +        L+GM+KTLVFYKGR
Sbjct: 67  YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRH-------SLIGMRKTLVFYKGR 119

Query: 135 APKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGG 179
           AP G+K++W+MHEYRLE   +    P+  ++ WVVCRVF K +  
Sbjct: 120 APNGQKSDWIMHEYRLETDEN--GTPQ--EEGWVVCRVFKKRLAA 160

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
255568990	382	NAC domain-containing protein 21/22, put	0.930	0.942	0.586	1e-113
225441662	403	PREDICTED: NAC domain-containing protein	0.917	0.880	0.551	1e-107
297739735	390	unnamed protein product [Vitis vinifera]	0.883	0.876	0.55	1e-106
224144754	367	NAC domain protein, IPR003441 [Populus t	0.870	0.918	0.551	1e-105
206584341	327	NAC domain protein NAC6 [Gossypium hirsu	0.834	0.987	0.572	1e-104
356571678	405	PREDICTED: NAC domain-containing protein	0.917	0.876	0.526	1e-102
356560987	407	PREDICTED: NAC domain-containing protein	0.922	0.877	0.519	6e-99
351727485	403	NAC domain protein [Glycine max] gi|1879	0.940	0.903	0.494	2e-92
356498721	410	PREDICTED: uncharacterized protein LOC10	0.943	0.890	0.488	3e-92
357508619	383	NAC domain protein [Medicago truncatula]	0.925	0.934	0.516	5e-91

>gi|255568990|ref|XP_002525465.1| NAC domain-containing protein 21/22, putative [Ricinus communis] gi|223535278|gb|EEF36955.1| NAC domain-containing protein 21/22, putative [Ricinus communis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/409 (58%), Positives = 281/409 (68%), Gaps = 49/409 (11%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEEA+V   N  + +IDLPPGFRFHPTDEEIITHYLTEKVMN+ FSACAIGEVDLNK EP
Sbjct: 1   MEEAIV--VNKGEDLIDLPPGFRFHPTDEEIITHYLTEKVMNSGFSACAIGEVDLNKCEP 58

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAKMGEKE+YFFCQRDRKYPTGMRTNRAT++GYWKATGKDKEIYKG         
Sbjct: 59  WDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIYKGK------NC 112

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNL KAAKD+WVVCRVFHK+I  G
Sbjct: 113 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLSKAAKDDWVVCRVFHKSI--G 170

Query: 181 IKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGH--QNEFKPMNTASTSSR 238
           IKK  I  L   +SFGDDF  +Y+SLPPLMDPP SS   +  +   ++FK M + +    
Sbjct: 171 IKKTSIQDLLRVNSFGDDFL-DYSSLPPLMDPPNSSRPSSSFNSGDDDFKAMTSRTM--- 226

Query: 239 SYNIPADNQNFLQPHQIPI---QNQIFSYHQNNNNP---NPGYLHQGTIRSSTGAIS-SL 291
                  + N+L      +    NQ + +HQ +N+     P  +    I S T   + ++
Sbjct: 227 -------DGNYLSQFSTTMVTNHNQNYFHHQPSNSSYQQQPSSIFYPQIPSFTFQTTPNM 279

Query: 292 MGAGFEGN----GDGQAILRALASTSHHHQQHNLESSSQ---CKVEQFSSNQSMISRSQD 344
             AG+  N     + Q +LRALA  +       +E S Q   CKVEQFSSN SM + SQD
Sbjct: 280 SAAGYFQNSTFGANDQTLLRALAGNTR------IEPSRQEKLCKVEQFSSNHSMATLSQD 333

Query: 345 TGLSTDMNTTTEISSVVSKQ-----DNKSY-DQDLDATSIAELDSFWDY 387
           TGLSTD+NT  EISSVV  +     +NK Y D D   +S+A+LDS WDY
Sbjct: 334 TGLSTDVNTAAEISSVVVSEQEIGSNNKVYNDLDQGPSSVADLDSLWDY 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441662|ref|XP_002277068.1| PREDICTED: NAC domain-containing protein 100-like [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/435 (55%), Positives = 280/435 (64%), Gaps = 80/435 (18%)

Query: 1   MEEA-VVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSE 59
           MEEA + DQ +    ++DLPPGFRFHPTDEEII++YLTE+VMN+SFSA AIGEVDLNK E
Sbjct: 1   MEEASLADQGDD---LMDLPPGFRFHPTDEEIISYYLTERVMNSSFSARAIGEVDLNKCE 57

Query: 60  PWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGG 119
           PWDLP KAKMGEKE+YFFCQRDRKYPTGMRTNRATE+GYWKATGKDKEIYKG       G
Sbjct: 58  PWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGK------G 111

Query: 120 GLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGG 179
            LVGMKKTLVFY+GRAPKGEK+NWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK+   
Sbjct: 112 CLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKS--A 169

Query: 180 GIKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGS------SSFGNGGHQNEFK----- 228
           GIK+  IP     +SFGDD   + +SLPPL+DPP S      S F NG  ++EFK     
Sbjct: 170 GIKRSLIPAPIRMNSFGDDLL-DCSSLPPLIDPPYSNPNKNDSCFTNG--EDEFKGSSTR 226

Query: 229 --------PMNTASTSSRSYNIPADNQNF-LQPHQI------------PIQNQIFSYHQN 267
                   P  + + +        D ++F L P+ +            P  N IF    +
Sbjct: 227 FSDGNHHYPYFSPTINGHQLQKQQDQKSFLLSPNNVHTTSNYQATLSNPTPNSIFYPQVS 286

Query: 268 NNN--------PNPGYLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQH 319
            +N        P P Y H     S      S  G+GF+G+ D  + +RA  S        
Sbjct: 287 PSNPLFPFQASPTPSYSHWQMGSS----FPSFPGSGFKGS-DPTSTVRAQTSGVQR---- 337

Query: 320 NLESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSKQ----DNKSYDQDLDA 375
                 QCKVEQFSSNQSM+S SQDTGLSTDMN  TEISSV+SK     +N+SY +DL  
Sbjct: 338 ------QCKVEQFSSNQSMVSLSQDTGLSTDMN--TEISSVLSKHQDTGNNRSY-EDLQG 388

Query: 376 TS---IAELDSFWDY 387
            S   I +LD   DY
Sbjct: 389 PSVGQIGDLDYLLDY 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739735|emb|CBI29917.3| unnamed protein product [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/420 (55%), Positives = 267/420 (63%), Gaps = 78/420 (18%)

Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           +DLPPGFRFHPTDEEII++YLTE+VMN+SFSA AIGEVDLNK EPWDLP KAKMGEKE+Y
Sbjct: 1   MDLPPGFRFHPTDEEIISYYLTERVMNSSFSARAIGEVDLNKCEPWDLPKKAKMGEKEWY 60

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRA 135
           FFCQRDRKYPTGMRTNRATE+GYWKATGKDKEIYKG       G LVGMKKTLVFY+GRA
Sbjct: 61  FFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGK------GCLVGMKKTLVFYRGRA 114

Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGGIKKIPIPGLPMNSSF 195
           PKGEK+NWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK+   GIK+  IP     +SF
Sbjct: 115 PKGEKSNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKS--AGIKRSLIPAPIRMNSF 172

Query: 196 GDDFFANYASLPPLMDPPGS------SSFGNG--------------------------GH 223
           GDD   + +SLPPL+DPP S      S F NG                          GH
Sbjct: 173 GDDLL-DCSSLPPLIDPPYSNPNKNDSCFTNGEDEFKGSSTRFSDGNHHYPYFSPTINGH 231

Query: 224 QNE---------FKPMNTASTSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPG 274
           Q +           P N  +TS+    +     N +   Q+   N +F +     +P P 
Sbjct: 232 QLQKQQDQKSFLLSPNNVHTTSNYQATLSNPTPNSIFYPQVSPSNPLFPFQA---SPTPS 288

Query: 275 YLHQGTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSS 334
           Y H         +  S  G+GF+G+ D  + +RA  S              QCKVEQFSS
Sbjct: 289 YSHW----QMGSSFPSFPGSGFKGS-DPTSTVRAQTSGVQR----------QCKVEQFSS 333

Query: 335 NQSMISRSQDTGLSTDMNTTTEISSVVSKQ----DNKSYDQDLDATS---IAELDSFWDY 387
           NQSM+S SQDTGLSTDMN  TEISSV+SK     +N+SY +DL   S   I +LD   DY
Sbjct: 334 NQSMVSLSQDTGLSTDMN--TEISSVLSKHQDTGNNRSY-EDLQGPSVGQIGDLDYLLDY 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144754|ref|XP_002325402.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222862277|gb|EEE99783.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/415 (55%), Positives = 270/415 (65%), Gaps = 78/415 (18%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEEA+V   N    +IDLPPGFRFHPTDEEIITHYLTEK                     
Sbjct: 3   MEEAIV--VNKGDDLIDLPPGFRFHPTDEEIITHYLTEK--------------------- 39

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
                   MGEKE+YFFCQRDRKYPTGMRTNRATE+GYWKATGKDKEIYKG         
Sbjct: 40  --------MGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKHS------ 85

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFYKGRAPKGEK+NWVMHEYRLEGKFSYY+LPK A+DEWVVCR+FHK+   G
Sbjct: 86  LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYYSLPKVARDEWVVCRIFHKST--G 143

Query: 181 IKKIPIPGLPMNSSFGDDFFANYASLPPLMDP------PGSSSFGNGGHQNEFKPMNTAS 234
           IKK  I  L   +SFGDDF  +Y+SLPP MDP      P +SSF +GG  NEFK M T S
Sbjct: 144 IKKTSIHDLLRVNSFGDDFL-DYSSLPPFMDPLNYNSRPSTSSF-SGGDNNEFKEMATRS 201

Query: 235 TSSRSY---NIPADNQNFLQP-------------HQIPIQNQIFSYHQNNNNPNPGYLHQ 278
           +    +   ++  +NQNF QP              QIP  N ++++  + N   PGYLHQ
Sbjct: 202 SDGNYFSNTSMLNNNQNFAQPPNTNYQAPNSSFHPQIPASNPLYTFQTSPN--MPGYLHQ 259

Query: 279 GTIRSSTGAISSLMGAGFEGNGDGQAILRALASTSHHHQQHNLESSSQCKVEQFSSNQSM 338
           G  +SS+ +  +   + F  N     +LR+LA  S + +   LE   QCKVE+FSSNQSM
Sbjct: 260 G--KSSSNSFQNFQNSIFSDN--EHTLLRSLARNS-YREASGLE--KQCKVERFSSNQSM 312

Query: 339 ISRSQDTGLSTDMNTTTEISSVVSKQDNKSYD---QDLDATS---IAELDSFWDY 387
           +S SQDTGLSTD+NTT EISSVVSKQ+  S+D   +DL+  S   IA+LD  WDY
Sbjct: 313 VSLSQDTGLSTDVNTTAEISSVVSKQEIGSHDKVFEDLEGPSAGPIADLDCLWDY 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206584341|gb|ACI15343.1| NAC domain protein NAC6 [Gossypium hirsutum] gi|206584359|gb|ACI15352.1| NAC domain protein NAC6 [Gossypium hirsutum]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/391 (57%), Positives = 258/391 (65%), Gaps = 68/391 (17%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           ME+A+V  +  +Q +++LPPGFRFHPTDEEIITHYL EKVMN++FSA AIGE DLNKSEP
Sbjct: 1   MEDAIV-VNQRQQELMELPPGFRFHPTDEEIITHYLLEKVMNSNFSAAAIGEADLNKSEP 59

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAKMGEKE+YFFCQRDRKYPTGMRTNRAT+AGYWKATGKDKEI+KG       G 
Sbjct: 60  WDLPDKAKMGEKEWYFFCQRDRKYPTGMRTNRATQAGYWKATGKDKEIFKGK------GC 113

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFYKGRAP+GEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN   G
Sbjct: 114 LVGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNT-AG 172

Query: 181 IKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRSY 240
           I K PI      +S GD+F  +YASLPPLMDP           ++EFK +N    SS  +
Sbjct: 173 INKSPI----AMASLGDEFM-DYASLPPLMDPTFDC-------ESEFKAINKTPVSSSIF 220

Query: 241 NIPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYLHQGTIRSSTGAISSLMGAGFEGNG 300
           N            QIP Q+ +F              H  T  S TG+  +          
Sbjct: 221 N-----------PQIPTQDPVF-------------FHPETSDSGTGSFRT---------- 246

Query: 301 DGQAILRALA---STSHHHQQHNLESSSQC-KVEQFSSNQSMISRSQDTGLSTDMNTTTE 356
           + +A +RALA   S  H  Q+       QC KVEQFSSNQSM+S SQDTG ST++N   E
Sbjct: 247 EDEASIRALAGNYSGDHIGQR-------QCNKVEQFSSNQSMVSPSQDTGHSTEIN-NNE 298

Query: 357 ISSVVSKQDNKSYDQDLDATSIAELDSFWDY 387
           ISSV+SK          D   I +L   W+Y
Sbjct: 299 ISSVISKSFGLGSIDPYD--DIEDLACLWNY 327

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571678|ref|XP_003554001.1| PREDICTED: NAC domain-containing protein 100-like [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/433 (52%), Positives = 277/433 (63%), Gaps = 78/433 (18%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEE +V   N  +  +DLPPGFRFHPTDEEIIT+YLTEKV N+SFSA AIGE DLNK EP
Sbjct: 1   MEEPIV--VNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVRNSSFSAIAIGEADLNKCEP 58

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAK+GEKE+YFFCQ+DRKYPTGMRTNRATE+GYWKATGKDKEIYKG       G 
Sbjct: 59  WDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGK------GN 112

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFY+GRAPKGEKTNWVMHE+RLEGKF+ YNLPKAAKDEWVV RVFHKN    
Sbjct: 113 LVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNT--D 170

Query: 181 IKKIPIPGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTS-SRS 239
           +KK   PGL   +S GDD   +Y+SLPPLMDPP    +GN    N   P+++++ S S  
Sbjct: 171 VKKSSTPGLLRINSIGDDLL-DYSSLPPLMDPP----YGNTNTTNNTNPLSSSTKSQSEG 225

Query: 240 YNIPA------DNQNFLQP---------HQIPIQNQIFSYHQNNNNPNPG---------- 274
           Y +P+        Q  ++P         ++IP  N   +    +NN N            
Sbjct: 226 YYLPSFSINNHQQQLLIKPEDHHHHRSYNEIPTINYTSNQANLSNNVNAMGNNTLSQPLN 285

Query: 275 ------YLHQGTIRSSTGAISSLMGAGFEGNGDG--QAILRALASTSHHHQQHNLESSSQ 326
                 Y+HQ  I+SS   + S+ G+ F  N +   +AILRA A+ ++ H         Q
Sbjct: 286 MFSADYYVHQNRIKSSI--MPSVAGSDFVNNNNNHHEAILRAFAAKNNEH--------IQ 335

Query: 327 CKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVSKQ--------DNKSYDQDLDA-TS 377
           CK+EQFSSN      SQDTGLS D N TT+ SSVVSKQ        +N++  +DL+  +S
Sbjct: 336 CKMEQFSSNH-----SQDTGLSNDRN-TTDTSSVVSKQQDNNMGRNNNRALYEDLEGPSS 389

Query: 378 IAELDSF----WD 386
           +A L       WD
Sbjct: 390 VAPLSDLECLQWD 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560987|ref|XP_003548767.1| PREDICTED: NAC domain-containing protein 100-like [Glycine max]

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 225/433 (51%), Positives = 277/433 (63%), Gaps = 76/433 (17%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEE +V   N  +  +DLPPGFRFHPTDEEIIT+YLTEKV N+ FSA AIGE DLNK EP
Sbjct: 1   MEEPIV--VNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVKNSIFSAIAIGEADLNKCEP 58

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAK+GEKE+YFFCQ+DRKYPTGMRTNRATE+GYWKATGKDKEIYKG       G 
Sbjct: 59  WDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGK------GN 112

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFYKGRAPKGEK+NWVMHE+RLEGKF+ YNLPKAAKDEWVV RVFHKN    
Sbjct: 113 LVGMKKTLVFYKGRAPKGEKSNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNT--D 170

Query: 181 IKKIPIPGLPMNSSFGDDFFANYASLPPLMDPP-GSSSFGNGGHQNEFKPMNTASTS-SR 238
           +KK  IPGL   +S GDD   +Y+SLP LMDPP G+++     + N   P+++   S S 
Sbjct: 171 VKKSSIPGLLRINSIGDDLL-DYSSLPSLMDPPYGNNTNTTNNNNNNANPLSSTKLSQSE 229

Query: 239 SYNIPA------DNQNFLQP--------HQIPIQNQIFSYHQNNNNPNPG---------- 274
            Y +P+       +Q  ++P        ++ P  N  F+ +Q N + N            
Sbjct: 230 GYYLPSFSINNNHHQLLIKPEDHHNHRIYEFPTIN--FTSNQTNLSSNNVNPMGNNNTLS 287

Query: 275 -----------YLHQGTIRSSTGAISSLMGAGF--EGNGDGQAILRALASTSHHHQQHNL 321
                      Y+HQ  I+SS   + S+ G+GF  + N   +AILRA A+ ++ H     
Sbjct: 288 SQPLNMFSADYYVHQNRIKSSI--MPSVAGSGFVSDNNNHDEAILRAFAAKNNEH----- 340

Query: 322 ESSSQCKVEQFSSNQSMISRSQDTGLSTDMNTTTEISSVVS---KQDNKSYDQDLDA-TS 377
               QCK+EQFSSN      SQDTGLS D N TT+ SSVVS     +N++  +DL+  +S
Sbjct: 341 ---IQCKMEQFSSNH-----SQDTGLSNDRN-TTDTSSVVSMGRNNNNRALYEDLEGPSS 391

Query: 378 IAELDSF----WD 386
           +A L       WD
Sbjct: 392 VAPLSDLECLQWD 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727485|ref|NP_001238186.1| NAC domain protein [Glycine max] gi|187940299|gb|ACD39380.1| NAC domain protein [Glycine max]

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 209/423 (49%), Positives = 260/423 (61%), Gaps = 59/423 (13%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEE +V   N  +  +DLPPGFRFHPTDEEIIT+YLTEKV N+SFSA AIGE D NK EP
Sbjct: 1   MEEPIV--VNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVRNSSFSAIAIGEADFNKCEP 58

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAKMGEK++YFFCQRDRKYPTGMRTNRAT++GYWKATGKDKEI+KG         
Sbjct: 59  WDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGK------NN 112

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK----- 175
           LVGMKKTLVFY+GRAPKGEKTNWVMHE+RL+GKF+ YNLPKAAKDEWVVC+VFHK     
Sbjct: 113 LVGMKKTLVFYRGRAPKGEKTNWVMHEFRLDGKFACYNLPKAAKDEWVVCKVFHKSNTTT 172

Query: 176 -NIGGGIKKIPIPG-LPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTA 233
            ++   +  I  PG L MNSS G+D   +++SLPPL+DP    +  N    N+FK  N  
Sbjct: 173 TDVNKRVLPIINPGLLRMNSSNGEDLLFDFSSLPPLVDPLFDQT-SNKHIDNDFKGTNNT 231

Query: 234 -------STSSRSYNIPADNQNFLQPHQI---PIQNQIFSYHQNNNNPNPGYLHQGTIRS 283
                    SS  Y +P  N N      +   P +++++    NN      Y     +  
Sbjct: 232 PSSSSAKLPSSSGYYLPNFNNNNNNQQMLMMKPEEHKMYEIPTNN------YASTSQVNF 285

Query: 284 STGAISSLMGAGFEGNGD--GQAILRALASTS-----HHHQQHNLESSSQCKVEQFSS-- 334
           +T   + +MG     N     Q  +R   STS          + +    QCK+EQFS+  
Sbjct: 286 TTTN-NPIMGISTGNNNTLLSQPQIRTQNSTSVPFNMFQDYYNYMNQGKQCKMEQFSNTK 344

Query: 335 NQSMISRSQDTGLSTDMNTTTEISSVVSKQDNKS------YDQDLD-----ATSIAELDS 383
           NQ ++S SQDT LS D       SSVVSKQDN        Y+ + +     AT++++L+ 
Sbjct: 345 NQPVVSASQDTCLSND------TSSVVSKQDNNIGRNKALYEDNFEAPSSVATTLSDLEC 398

Query: 384 FWD 386
            WD
Sbjct: 399 LWD 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498721|ref|XP_003518198.1| PREDICTED: uncharacterized protein LOC100813376 [Glycine max]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/428 (48%), Positives = 262/428 (61%), Gaps = 63/428 (14%)

Query: 1   MEEAVV----DQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLN 56
           MEE VV    D H+H    +DLPPGFRFHPTDEEIIT YLTEKV+N +FSA AIGE D N
Sbjct: 2   MEEPVVVNKGDDHDHDHEPLDLPPGFRFHPTDEEIITCYLTEKVLNRTFSATAIGEADFN 61

Query: 57  KSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGV 116
           K EPWDLP KAKMGEK++YFFCQRDRKYPTGMRTNRAT++GYWKATGKDKEI+KG     
Sbjct: 62  KCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGK---- 117

Query: 117 GGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK- 175
               LVGMKKTLVFY+GRAPKGEK+NWVMHE+RL+GKF+ YNLPKA+KDEWVVC+VFHK 
Sbjct: 118 --NNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRLDGKFACYNLPKASKDEWVVCKVFHKG 175

Query: 176 --NIGGGIKKIPIP-----GLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFK 228
                  + K  +P      L MNSS G+D F +++SLPPL+DP    +  N    N+FK
Sbjct: 176 NTTTTDVVNKRALPIINPCLLRMNSSIGEDLF-DFSSLPPLVDPLFDQT-SNKHIDNDFK 233

Query: 229 PMNTASTSSRS------YNIPADNQNFLQPHQI----PIQNQIFSYHQNNNNPNPGYLHQ 278
             N   +SS +      Y +P    N    H +    P +++++    NN      Y   
Sbjct: 234 GTNNTPSSSSAKPPSSGYYLPNFINNNNNQHMLMMMKPEEHKMYEIPTNN------YAST 287

Query: 279 GTIRSSTGAISSLMGAGFEGNGD--GQAILRALASTS-----HHHQQHNLESSSQCKVEQ 331
             +  +T   + +MG     N     Q  +R   STS          + +    QCK+EQ
Sbjct: 288 SQVNFTTTN-NPIMGISTGNNNTLLSQPQIRTQNSTSVPFNMFQDYYNYMNQGKQCKMEQ 346

Query: 332 FSS--NQSMISRSQDTGLSTDMNTTTEISSVVSKQDNKS------YDQDLD-----ATSI 378
           FS+  NQ ++S SQDT LS D       SSVVSKQDN        Y+ + +     AT++
Sbjct: 347 FSNTKNQPVVSASQDTCLSND------TSSVVSKQDNNIGRNKALYEDNFEAPSSVATTL 400

Query: 379 AELDSFWD 386
           ++L+  WD
Sbjct: 401 SDLECLWD 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508619|ref|XP_003624598.1| NAC domain protein [Medicago truncatula] gi|355499613|gb|AES80816.1| NAC domain protein [Medicago truncatula]

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 213/412 (51%), Positives = 255/412 (61%), Gaps = 54/412 (13%)

Query: 1   MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
           MEE +V      Q  +DLPPGFRFHPTD EII  YLTEKV N+ FSA AIGE DLNK EP
Sbjct: 1   MEEPIVVNKGEDQ-TLDLPPGFRFHPTDAEIIVCYLTEKVKNSKFSATAIGEADLNKCEP 59

Query: 61  WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGG 120
           WDLP KAKMGEKE+YFFCQ+DRKYPTGMRTNRATE+GYWKATGKDKEIY     G G   
Sbjct: 60  WDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIY---HKGKGIQN 116

Query: 121 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGGG 180
           LVGMKKTLVFYKGRAPKGEKTNWVMHE+RLEGKF+ +NLP   KDEWVV RVFHKN    
Sbjct: 117 LVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFATHNLPNKEKDEWVVSRVFHKNT--D 174

Query: 181 IKKIPI-PGLPMNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTASTSSRS 239
           +KK  I  GL   +S G D   +Y+SLPPLMDP    S+ N   +        +ST S+S
Sbjct: 175 VKKPQISSGLLRINSIGHDDLLDYSSLPPLMDP----SYTNDDFKGITTNQQISSTKSQS 230

Query: 240 --YNIPADNQNFLQPHQIPIQNQIFSYHQNNNNP---NPGYLHQGTIRSSTGAISSLMGA 294
             Y +P+ + N  Q HQ  I+ +  +YH+ N +    NP  ++  +I + +   + +   
Sbjct: 231 DGYYLPSFSINNNQ-HQFLIKPED-NYHRINYDQHEINPTMMNYTSISNQSNLNNPI--- 285

Query: 295 GFEGNGDGQAILRALASTSHHHQQHNLESSS------------QCKVEQFSSNQSMISRS 342
              GN   Q  +R      ++    N   SS            +CKVEQFSSNQ     S
Sbjct: 286 ---GNTLPQPQIRIQNPNLNYFMYQNRMQSSMPTNVYGSGKNNECKVEQFSSNQ-----S 337

Query: 343 QDTGLSTDMNTTTEISSVVSKQD---NKSYDQDLDATS----IAELDSFWDY 387
           QDTGLS D       SS VSK D   N++   DL+  S    +++LDSFWDY
Sbjct: 338 QDTGLSND------TSSAVSKLDMERNRALYDDLEGPSSVAPLSDLDSFWDY 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.689	0.789	0.549	8.3e-81
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.630	0.728	0.577	1.4e-80
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.617	0.711	0.559	5.3e-73
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.488	0.574	0.610	2e-67
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.524	0.712	0.619	4.7e-64
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.395	0.408	0.696	6.1e-62
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.397	0.496	0.672	6.9e-61
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.392	0.477	0.735	8.1e-60
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.571	0.703	0.518	4.2e-56
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.426	0.522	0.594	3.3e-55

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 155/282 (54%), Positives = 180/282 (63%)

Query:     2 EEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPW 61
             E  VV      Q V+DLPPGFRFHPTDEEIITHYL EKV N  F+A AIG+ DLNK+EPW
Sbjct:     4 EGGVVVNQGGDQEVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPW 63

Query:    62 DLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXX 121
             DLP  AKMGEKEFYFFCQRDRKYPTGMRTNRAT +GYWKATGKDKEI+            
Sbjct:    64 DLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCLVGMKK- 122

Query:   122 XXXXXTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXXX 181
                  TLVFY GRAPKGEKTNWVMHEYRL+GK+SY+NLPK A+DEWVVCRVFHKN     
Sbjct:   123 -----TLVFYTGRAPKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNAPSTT 177

Query:   182 XXXXXXXLPMNSSFGDDFFANYASLPPLMDP-----PGSSSFGNGGHQNEFKPMNTASTS 236
                      ++S    D   +++SLPPL+DP     PG S F     Q++ KP+    T+
Sbjct:   178 ITTTKQLSRIDSLDNIDHLLDFSSLPPLIDPGFLGQPGPS-FSGARQQHDLKPVLHHPTT 236

Query:   237 SRSYN--IPADNQNFLQPHQIPIQNQIFSYHQNNNNPNPGYL 276
             +   N  +P    NF   H +      F Y   + N N G +
Sbjct:   237 APVDNTYLPTQALNFPY-HSVHNSGSDFGYGAGSGNNNKGMI 277

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 157/272 (57%), Positives = 185/272 (68%)

Query:     1 MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
             +EE VV  H   + ++DLPPGFRFHPTDEEIIT YL EKV+N+ F+A A+GE DLNK EP
Sbjct:     5 VEEGVVLNHGGEE-LVDLPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEP 63

Query:    61 WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXX 120
             WDLP +AKMGEKEFYFFCQRDRKYPTGMRTNRATE+GYWKATGKDKEI+           
Sbjct:    64 WDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKK 123

Query:   121 XXXXXXTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXX 180
                   TLVFY+GRAPKGEKTNWVMHEYRLEGK+SYYNLPK+A+DEWVVCRVFHKN    
Sbjct:   124 ------TLVFYRGRAPKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNNPST 177

Query:   181 XXXXXXXXLP------MNSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQNEFKPMNTAS 234
                     +P      M+S    D   +++SLPPL+DP    SF +   Q  FKP+N  +
Sbjct:   178 TTQPMTR-IPVEDFTRMDSLENIDHLLDFSSLPPLIDP----SFMSQTEQPNFKPINPPT 232

Query:   235 TSSRSYNIPADNQNFLQPHQIPIQNQIFSYHQ 266
                  Y+I +     +QPH       IF+ HQ
Sbjct:   233 -----YDISSP----IQPHHFNSYQSIFN-HQ 254

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 150/268 (55%), Positives = 174/268 (64%)

Query:    16 IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
             +DLPPGFRFHPTDEE+ITHYL +KV++TSFSA AIGEVDLNKSEPW+LP  AKMGEKE+Y
Sbjct:    14 MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEWY 73

Query:    76 FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
             FFC RDRKYPTG+RTNRATEAGYWKATGKDKEIY                 TLVFY+GRA
Sbjct:    74 FFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKK-------TLVFYRGRA 126

Query:   136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXXXXXXXXXXLPMNSSF 195
             PKG+KTNWVMHEYRLEGKFS +NLPK AK+EWV+CRVF K+            L    S 
Sbjct:   127 PKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPISS--LIRIGSL 184

Query:   196 GDDFFANYASLPPLMD--PPGSSS---------FGNGGHQNEFKPMNTASTSSRSYNIPA 244
             G DF  N + LP L D  P    +         F N   QN+   +N  S+   + +I A
Sbjct:   185 GTDF--NPSLLPSLTDSSPYNDKTKTEPVYVPCFSNQTDQNQGTTLNCFSSPVLN-SIQA 241

Query:   245 DNQNFLQPHQIPI-QNQIFSYHQNNNNP 271
             D   F   H+IP+ Q Q      N  +P
Sbjct:   242 DI--F---HRIPLYQTQSLQVSMNLQSP 264

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 124/203 (61%), Positives = 148/203 (72%)

Query:     9 HNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAK 68
             H      +DLPPGFRFHPTDEE+ITHYL +KV++  FSA AIGEVDLNK+EPW+LP KAK
Sbjct:     8 HKEDDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAK 67

Query:    69 MGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTL 128
             +GEKE+YFFC RDRKYPTG+RTNRAT+AGYWKATGKDKEI+                 TL
Sbjct:    68 IGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKSLVGMKK-------TL 120

Query:   129 VFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXXXXXXXXXX 188
             VFY+GRAPKG+KTNWVMHEYRL+GK S +NLPK AK+EWV+CRVFHK             
Sbjct:   121 VFYRGRAPKGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAGGKK------- 173

Query:   189 LPMNSSFGDDFFANYASLPPLMD 211
             +P+++      +   +SLPPL D
Sbjct:   174 IPISTLIRIGSYGTGSSLPPLTD 196

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 135/218 (61%), Positives = 146/218 (66%)

Query:    16 IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
             IDLPPGFRFHPTDEE+ITHYL  KV NT FSA AIGEVDLNK EPWDLP KAKMGEKE+Y
Sbjct:    18 IDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWY 77

Query:    76 FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
             FFC RDRKYPTG+RTNRATEAGYWKATGKDKEI+                 TLVFYKGRA
Sbjct:    78 FFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKK-------TLVFYKGRA 130

Query:   136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXXXXXXXXXXLPMNSSF 195
             PKG KTNWVMHEYRLEGK+   NLP+ AK+EWV+CRVF K             +PM+   
Sbjct:   131 PKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTK-------VPMSMLD 183

Query:   196 GDDFFANYASLPPLMDPPGSSSF-GNGGHQNEFKPMNT 232
                     A LP LMD     SF G+  H   F    T
Sbjct:   184 PHINRMEPAGLPSLMDCSQRDSFTGSSSHVTCFSDQET 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 110/158 (69%), Positives = 126/158 (79%)

Query:    18 LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFF 77
             LPPGFRFHPTDEE+ITHYL  KV++  FS+ AI EVDLNK EPW LP +AKMGEKE+YFF
Sbjct:    17 LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query:    78 CQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRAPK 137
               RDRKYPTG+RTNRATEAGYWKATGKD+EI+                 TLVFYKGRAPK
Sbjct:    77 SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKK-----TLVFYKGRAPK 131

Query:   138 GEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK 175
             GEK+NWVMHEYRLEGKFSY+ + +++KDEWV+ RVF K
Sbjct:   132 GEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQK 169

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 107/159 (67%), Positives = 128/159 (80%)

Query:    18 LPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFF 77
             +PPGFRFHPTDEE+IT+YL +KV++++FS  AI +VDLNKSEPW+LP KAKMGEKE+YFF
Sbjct:    20 MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEWYFF 79

Query:    78 CQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRAPK 137
               RDRKYPTG+RTNRATEAGYWKATGKD+EI                  TLVFYKGRAPK
Sbjct:    80 TLRDRKYPTGLRTNRATEAGYWKATGKDREI-----KSSKTKSLLGMKKTLVFYKGRAPK 134

Query:   138 GEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
             GEK+ WVMHEYRL+GKFSY+ +  +AKDEWV+C+V  K+
Sbjct:   135 GEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKS 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 117/159 (73%), Positives = 128/159 (80%)

Query:    16 IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
             IDLPPGFRFHPTDEE+ITHYL  KV+N+ FSA AIGEVDLNK EPWDLP KAK+GEKE+Y
Sbjct:    22 IDLPPGFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWKAKLGEKEWY 81

Query:    76 FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
             FFC RDRKYPTG+RTNRAT+AGYWKATGKDKEI+                 TLVFYKGRA
Sbjct:    82 FFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKSLVGMKK-------TLVFYKGRA 134

Query:   136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFH 174
             PKG KTNWVMHEYRLEGKF+  NL K AK+E V+ RVFH
Sbjct:   135 PKGVKTNWVMHEYRLEGKFAIDNLSKTAKNECVISRVFH 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 127/245 (51%), Positives = 150/245 (61%)

Query:    17 DLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYF 76
             +LPPGFRFHPTDEE+ITHYL  KV +  F+  A+ +VDLNK EPWDLP+KA MGEKE+YF
Sbjct:     4 NLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKEWYF 63

Query:    77 FCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRAP 136
             F QRDRKYPTG+RTNRATEAGYWK TGKDKEIY                 TLVFYKGRAP
Sbjct:    64 FSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGVLVGMKK-------TLVFYKGRAP 116

Query:   137 KGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNXXXXXXXXXX--XXLPM--- 191
             KGEK+NWVMHEYRLE K   +N P   K+EWVVCRVF K+               P    
Sbjct:   117 KGEKSNWVMHEYRLESK-QPFN-P-TNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSFGS 173

Query:   192 ----NSSFGDDFFANYASLPPLMDPPGSSSFGNGGHQ----NEFKPMNTASTSSRSYNIP 243
                 NSS  ++F  +   LP L     +  + N  HQ    N +   NT ST+  + N+ 
Sbjct:   174 PCDANSSMANEF-EDIDELPNLNSNSSTIDYNNHIHQYSQRNVYSEDNTTSTAGLNMNMN 232

Query:   244 ADNQN 248
               + N
Sbjct:   233 MASTN 237

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 104/175 (59%), Positives = 123/175 (70%)

Query:     1 MEEAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEP 60
             ME+   D   H++    LPPGFRFHPTDEE+I++YL  K+ + +F+  AI +VDLNKSEP
Sbjct:     1 MEQG--DHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEP 58

Query:    61 WDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXX 120
             W+LP KAKMG KE+YFF  RDRKYPTG+RTNRAT  GYWK TGKDKEI+           
Sbjct:    59 WELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMK 118

Query:   121 XXXXXXTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK 175
                   TLVFY+GRAP+GEKT WVMHEYRL  K SY     + +DEWVVCRVF K
Sbjct:   119 K-----TLVFYRGRAPRGEKTCWVMHEYRLHSKSSYRT---SKQDEWVVCRVFKK 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025499001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (390 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-81

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  242 bits (621), Expect = 9e-81
 Identities = 90/136 (66%), Positives = 102/136 (75%), Gaps = 8/136 (5%)

Query: 18  LPPGFRFHPTDEEIITHYLTEKVMNTSFSAC-AIGEVDLNKSEPWDLP-SKAKMGEKEFY 75
           LPPGFRFHPTDEE++ +YL  KV+         I EVD+ K EPWDLP  KAK G++E+Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRA 135
           FF  RDRKYP G RTNRAT +GYWKATGKDK +         GG +VGMKKTLVFYKGRA
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVL------SKGGEVVGMKKTLVFYKGRA 114

Query: 136 PKGEKTNWVMHEYRLE 151
           PKGEKT+WVMHEYRLE
Sbjct: 115 PKGEKTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=8.5e-44  Score=307.19  Aligned_cols=128  Identities=55%  Similarity=1.096  Sum_probs=97.8

Q ss_pred             CCCCceeCCCHHHHHHHHHHHHHcCCCCCc-cceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCceeecCC
Q 016542           18 LPPGFRFHPTDEEIITHYLTEKVMNTSFSA-CAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEA   96 (387)
Q Consensus        18 LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~-~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~nRat~~   96 (387)
                      |||||||+|||||||.+||++|+.+.+++. .+|+++|||.+|||+||...+.++++||||+++.+++.+|.|++|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999877 7899999999999999965555778999999999999999999999999


Q ss_pred             ceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeC
Q 016542           97 GYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE  151 (387)
Q Consensus        97 GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~  151 (387)
                      |+||++|++++|....      +.+||+||+|+||.++.+++.||+|+||||+|+
T Consensus        81 G~Wk~~g~~~~i~~~~------g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPG------GKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-T------TCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeeccccccccccc------ceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999853      799999999999999889999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		5e-40
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		5e-40
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		5e-39

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW LP+KA  GEKE+Y
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NR   +GYWKATG DK I                   LVFY G+A
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-------STEGQRVGIKKALVFYIGKA 130
Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           PKG KTNW+MHEYRL          K   D+WV+CR++ K 
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKL--DDWVLCRIYKKQ 169

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW LP+KA  GEKE+Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NR   +GYWKATG DK I                   LVFY G+A
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-------STEGQRVGIKKALVFYIGKA 127
Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKN 176
           PKG KTNW+MHEYRL          K   D+WV+CR++ K 
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKL--DDWVLCRIYKKQ 166

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  158 bits (399), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 96/164 (58%), Gaps = 10/164 (6%)
Query: 16  IDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFY 75
           ++LPPGFRFHPTD+E++ HYL  K          I EVDL K +PWDLP +A  G +E+Y
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 76  FFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYXXXXXXXXXXXXXXXXXTLVFYKGRA 135
           FF  RDRKYP G R NRA   GYWKATG DK +                   LVFY G+A
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-------APRGRTLGIKKALVFYAGKA 125
Query: 136 PKGEKTNWVMHEYRLEGKFSYYNLPKAAK---DEWVVCRVFHKN 176
           P+G KT+W+MHEYRL          K      D+WV+CR+++K 
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-102
1ut7_A	171	No apical meristem protein; transcription regulati	1e-102

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  300 bits (769), Expect = e-102
 Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 12/181 (6%)

Query: 6   VDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPS 65
           + +    +  ++LPPGFRFHPTD+E++ HYL  K          I EVDL K +PWDLP 
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62

Query: 66  KAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMK 125
           +A  G +E+YFF  RDRKYP G R NRA   GYWKATG DK +    +        +G+K
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR-------TLGIK 115

Query: 126 KTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAA---KDEWVVCRVFHKNIGGGIK 182
           K LVFY G+AP+G KT+W+MHEYRL          K      D+WV+CR+++K      +
Sbjct: 116 KALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK--NEWE 173

Query: 183 K 183
           K
Sbjct: 174 K 174

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  299 bits (768), Expect = e-102
 Identities = 85/177 (48%), Positives = 103/177 (58%), Gaps = 9/177 (5%)

Query: 3   EAVVDQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWD 62
             +  Q       + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW 
Sbjct: 2   SHMGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV 61

Query: 63  LPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLV 122
           LP+KA  GEKE+YFF  RDRKYP G R NR   +GYWKATG DK I    +        V
Sbjct: 62  LPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ-------RV 114

Query: 123 GMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHKNIGG 179
           G+KK LVFY G+APKG KTNW+MHEYRL              D+WV+CR++ K    
Sbjct: 115 GIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQSSA 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3.2e-58  Score=418.60  Aligned_cols=159  Identities=50%  Similarity=0.982  Sum_probs=137.8

Q ss_pred             ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542           12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN   91 (387)
Q Consensus        12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n   91 (387)
                      .+..+.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..|+++||||+++++||++|.|++
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence            35778999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccC---CCCCCCCCcEE
Q 016542           92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYY---NLPKAAKDEWV  168 (387)
Q Consensus        92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~---~lp~~~~~e~V  168 (387)
                      |+|++||||+||++++|...       |.+||+||+|+||+|++|+|.||+|+||||+|.+.....   .......++||
T Consensus        89 R~t~~G~WkatG~dk~I~~~-------g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wV  161 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAPR-------GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWV  161 (174)
T ss_dssp             EEETTEEEEECSCCEEECCS-------SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEE
T ss_pred             eecCCceEccCCCCcEEeeC-------CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEE
Confidence            99999999999999999862       689999999999999999999999999999998754321   01123468999


Q ss_pred             EEEEEEecc
Q 016542          169 VCRVFHKNI  177 (387)
Q Consensus       169 LCRIf~K~~  177 (387)
                      |||||+|+.
T Consensus       162 lCrvf~K~~  170 (174)
T 3ulx_A          162 LCRLYNKKN  170 (174)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEEcCC
Confidence            999999986

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.6e-57  Score=411.48  Aligned_cols=157  Identities=54%  Similarity=0.975  Sum_probs=133.9

Q ss_pred             ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542           12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN   91 (387)
Q Consensus        12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n   91 (387)
                      ...++.|||||||||||||||.|||++|+.+.+++..+|+++|||++|||+||+.++.++++||||+++++||++|.|++
T Consensus        11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence            35678999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccCCCCCCCCCcEEEEE
Q 016542           92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCR  171 (387)
Q Consensus        92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCR  171 (387)
                      |+|++||||+||++++|..+       +.+||+||+|+||+|++|++.||+|+||||+|.....  .......++|||||
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~-------~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCr  161 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTE-------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCR  161 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEET-------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEE
T ss_pred             ccCCCCEEeccCCCceEEec-------CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEE
Confidence            99999999999999999973       5899999999999999999999999999999987531  11123568999999


Q ss_pred             EEEecc
Q 016542          172 VFHKNI  177 (387)
Q Consensus       172 If~K~~  177 (387)
                      ||+|+.
T Consensus       162 v~~k~~  167 (171)
T 1ut7_A          162 IYKKQS  167 (171)
T ss_dssp             EEECC-
T ss_pred             EEEcCC
Confidence            999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-71

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  219 bits (559), Expect = 1e-71
 Identities = 87/169 (51%), Positives = 103/169 (60%), Gaps = 9/169 (5%)

Query: 7   DQHNHRQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSK 66
            Q       + LPPGFRF+PTDEE++  YL  K     FS   I E+DL K +PW LP+K
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65

Query: 67  AKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKK 126
           A  GEKE+YFF  RDRKYP G R NR   +GYWKATG DK I          G  VG+KK
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS-------TEGQRVGIKK 118

Query: 127 TLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCRVFHK 175
            LVFY G+APKG KTNW+MHEYRL          K   D+WV+CR++ K
Sbjct: 119 ALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTK--LDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-53  Score=382.07  Aligned_cols=156  Identities=54%  Similarity=0.984  Sum_probs=132.3

Q ss_pred             ccCCCCCCCCceeCCCHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCCcccccCCCceEEEeeccCccCCCCCCce
Q 016542           12 RQGVIDLPPGFRFHPTDEEIITHYLTEKVMNTSFSACAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTN   91 (387)
Q Consensus        12 ~~~~~~LPPGFRF~PTDEELI~~YL~~Ki~g~pl~~~~I~evDVy~~ePWdLP~~~k~gekeWYFFs~r~rKy~~G~R~n   91 (387)
                      ...+++|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.+
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccc
Confidence            35788999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             eecCCceEEeccCCceeeeCCCCCCCCCceeEEEEEEEeeecCCCCCCCcCeEEEEEEeCCCcccCCCCCCCCCcEEEEE
Q 016542           92 RATEAGYWKATGKDKEIYKGNKGGVGGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSYYNLPKAAKDEWVVCR  171 (387)
Q Consensus        92 Rat~~GyWKatGkdk~I~~~~~gg~g~g~lVG~KKtLvFY~GrapkG~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCR  171 (387)
                      |+|++|+||++|+++.|...       |.+||+||+|+||+++++++.+|+|+||||+|.+.....  .....++|||||
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~-------g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~--~~~~~~~~VLCr  161 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTE-------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCR  161 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEET-------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEE
T ss_pred             cccCCCEecccCCCceEecC-------CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc--CccccCCEEEEE
Confidence            99999999999999988762       689999999999999999999999999999998753211  223467999999


Q ss_pred             EEEec
Q 016542          172 VFHKN  176 (387)
Q Consensus       172 If~K~  176 (387)
                      ||+|+
T Consensus       162 I~~Kk  166 (166)
T d1ut7a_         162 IYKKQ  166 (166)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99984